BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0182 (PAB0182) DE:Hypothetical protein
         (213 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75218 hypothetical protein PAB0182 - Pyrococcus abyssi (st...   439  e-123

>pir||A75218 hypothetical protein PAB0182 - Pyrococcus abyssi (strain Orsay)
           >gi|5457701|emb|CAB49192.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 213
           
 Score =  439 bits (1118), Expect = e-123
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 1   MRKIITLGVVLVIFLIGYSTLSLNSSLEERKPTIDQIVSEISSYSSFCWIVNGTSLSVPL 60
           MRKIITLGVVLVIFLIGYSTLSLNSSLEERKPTIDQIVSEISSYSSFCWIVNGTSLSVPL
Sbjct: 1   MRKIITLGVVLVIFLIGYSTLSLNSSLEERKPTIDQIVSEISSYSSFCWIVNGTSLSVPL 60

Query: 61  FRARAKSVKACINYSNGSAIYWVRDEGGKDFSYQINMDELDWDIVVHSVWPELNIMNFLK 120
           FRARAKSVKACINYSNGSAIYWVRDEGGKDFSYQINMDELDWDIVVHSVWPELNIMNFLK
Sbjct: 61  FRARAKSVKACINYSNGSAIYWVRDEGGKDFSYQINMDELDWDIVVHSVWPELNIMNFLK 120

Query: 121 WILENGNVTEVKRVDEGYEFHVLHEYKEESNAGTLENPRVVEITIVWNVTLVVNDNGKLV 180
           WILENGNVTEVKRVDEGYEFHVLHEYKEESNAGTLENPRVVEITIVWNVTLVVNDNGKLV
Sbjct: 121 WILENGNVTEVKRVDEGYEFHVLHEYKEESNAGTLENPRVVEITIVWNVTLVVNDNGKLV 180

Query: 181 GGHFIGKSIGPSNVNTANWVQEGNFSILRTNEH 213
           GGHFIGKSIGPSNVNTANWVQEGNFSILRTNEH
Sbjct: 181 GGHFIGKSIGPSNVNTANWVQEGNFSILRTNEH 213


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.136    0.410 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84879582
Number of Sequences: 2977
Number of extensions: 3633254
Number of successful extensions: 7640
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7639
Number of HSP's gapped (non-prelim): 1
length of query: 213
length of database: 189,106,746
effective HSP length: 53
effective length of query: 160
effective length of database: 157,386,935
effective search space: 25181909600
effective search space used: 25181909600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)