BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0183 (glpA) DE:glycerol-3-phosphate dehydrogenase (glpA)
(497 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75218 glycerol-3-phosphate dehydrogenase (glpa) PAB0183 - ... 1019 0.0
pir||E72254 conserved hypothetical protein - Thermotoga maritima... 410 e-113
emb|CAB88982.1| (AL353864) putative oxidoreductase. [Streptomyce... 243 3e-63
gi|11498926 glycerol-3-phosphate dehydrogenase (glpA) [Archaeogl... 207 3e-52
sp|P47285|Y039_MYCGE HYPOTHETICAL PROTEIN MG039 >gi|1361521|pir|... 185 1e-45
pir||B83461 hypothetical protein PA1489 [imported] - Pseudomonas... 178 2e-43
sp|P75063|Y039_MYCPN HYPOTHETICAL PROTEIN MG039 HOMOLOG (D09_ORF... 161 1e-38
emb|CAC12250.1| (AL445066) conserved hypothetical protein [Therm... 160 3e-38
pir||T51272 hypothetical protein T8M16_170 - Arabidopsis thalian... 120 5e-26
pir||G75122 sarcosine oxidase, chain beta (soxb) PAB1843 - Pyroc... 108 2e-22
pir||E83003 hypothetical protein PA5145 [imported] - Pseudomonas... 107 4e-22
dbj|BAB14174.1| (AK022680) unnamed protein product [Homo sapiens] 106 5e-22
sp|P43799|GLPA_HAEIN ANAEROBIC GLYCEROL-3-PHOSPHATE DEHYDROGENAS... 105 1e-21
pir||F71008 probable sarcosine oxidase - Pyrococcus horikoshii >... 102 1e-20
sp|P37339|YGAF_ECOLI HYPOTHETICAL 48.6 KD PROTEIN IN ALPA-GABP I... 99 1e-19
dbj|BAA16521.1| (D90890) similar to [SwissProt Accession Number ... 99 1e-19
gb|AAA83864.1| (M20938) glycerol-3-phosphate dehydrogenase subun... 98 3e-19
sp|P13032|GLPA_ECOLI ANAEROBIC GLYCEROL-3-PHOSPHATE DEHYDROGENAS... 98 3e-19
gb|AAK42656.1| Glycerol-3-phosphate dehydrogenase chain A (glpA)... 96 1e-18
gb|AAF60576.1| (AC006768) contains similarity to Mycoplasma geni... 95 2e-18
emb|CAC08409.1| (AL392177) SCD17A.05c, conserved hypothetical pr... 90 7e-17
pir||E82422 anaerobic glycerol-3-phosphate dehydrogenase, chain ... 87 3e-16
pir||S76786 hypothetical protein - Synechocystis sp. (strain PCC... 87 6e-16
pir||D72721 hypothetical protein APE0309 - Aeropyrum pernix (str... 86 1e-15
gb|AAF53729.1| (AE003661) CG10639 gene product [Drosophila melan... 85 2e-15
pir||E82496 probable transcription regulator VCA0147 [imported] ... 81 3e-14
gb|AAC48785.1| (AF026954) pyruvate dehydrogenase phosphatase reg... 80 4e-14
pir||H83370 hydrogen cyanide synthase HcnC PA2195 [imported] - P... 78 2e-13
pir||F75144 sarcosine oxidase, chain beta (soxb) PAB0214 - Pyroc... 75 1e-12
gb|AAG09254.1|AF176664_3 (AF176664) iminodiacetate oxidase [EDTA... 74 4e-12
pir||B71184 probable sarcosine oxidase - Pyrococcus horikoshii >... 73 8e-12
gb|AAC38596.1| (AF053760) hydrogen cyanide synthase HcnC [Pseudo... 72 1e-11
>pir||B75218 glycerol-3-phosphate dehydrogenase (glpa) PAB0183 - Pyrococcus
abyssi (strain Orsay) >gi|5457702|emb|CAB49193.1|
(AJ248283) glycerol-3-phosphate dehydrogenase (glpA)
[Pyrococcus abyssi]
Length = 497
Score = 1019 bits (2605), Expect = 0.0
Identities = 497/497 (100%), Positives = 497/497 (100%)
Query: 1 MGTRTKVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDP 60
MGTRTKVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDP
Sbjct: 1 MGTRTKVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDP 60
Query: 61 EKYPMRARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPE 120
EKYPMRARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPE
Sbjct: 61 EKYPMRARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPE 120
Query: 121 MRIVDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKG 180
MRIVDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKG
Sbjct: 121 MRIVDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKG 180
Query: 181 IKVKRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDEGIP 240
IKVKRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDEGIP
Sbjct: 181 IKVKRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDEGIP 240
Query: 241 GPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKK 300
GPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKK
Sbjct: 241 GPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKK 300
Query: 301 LWPNLPPRSKVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYYVA 360
LWPNLPPRSKVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYYVA
Sbjct: 301 LWPNLPPRSKVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYYVA 360
Query: 361 ELIERELDVKLIEKKNWNPYRRDFPRIAMLPPEKANELIRRNPLYGKIVCRCNTVSEGEI 420
ELIERELDVKLIEKKNWNPYRRDFPRIAMLPPEKANELIRRNPLYGKIVCRCNTVSEGEI
Sbjct: 361 ELIERELDVKLIEKKNWNPYRRDFPRIAMLPPEKANELIRRNPLYGKIVCRCNTVSEGEI 420
Query: 421 VEAINRMKFIGVKSPSIDSVKFRTKATTGTCQGAFCRPRIIQILAREYKLPPWKIRLNVP 480
VEAINRMKFIGVKSPSIDSVKFRTKATTGTCQGAFCRPRIIQILAREYKLPPWKIRLNVP
Sbjct: 421 VEAINRMKFIGVKSPSIDSVKFRTKATTGTCQGAFCRPRIIQILAREYKLPPWKIRLNVP 480
Query: 481 GSEIGIGDVKVLTRGEN 497
GSEIGIGDVKVLTRGEN
Sbjct: 481 GSEIGIGDVKVLTRGEN 497
>pir||E72254 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981997|gb|AAD36502.1|AE001795_5 (AE001795)
conserved hypothetical protein [Thermotoga maritima]
Length = 479
Score = 410 bits (1042), Expect = e-113
Identities = 223/487 (45%), Positives = 315/487 (63%), Gaps = 12/487 (2%)
Query: 6 KVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPM 65
K +IG G+ G+ IAR L+KY+ LEV LIEKN DVGWGV+KAN+A++H GYDD PE +
Sbjct: 2 KAVVIGGGVFGSLIARELTKYD-LEVTLIEKNLDVGWGVTKANSAVVHAGYDDPPES--V 58
Query: 66 RARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVD 125
RA+FC GN ++ + K+L+ G+ VVA +E+ ELE+LL++G +NGVP + I++
Sbjct: 59 RAQFCASGNAMYEDLSKELDFDFKRIGSFVVAFNDEELKELERLLKQGEENGVPGLTILE 118
Query: 126 KEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKVKR 185
++E+ +EP LN AL+ P G P IA VENAV NG+K L V G +
Sbjct: 119 RDEVLSMEPNLNPEVKYALYAPTAGITEPWMVAIAAVENAVQNGLKLVLGESVVGFEKVN 178
Query: 186 GEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDEGIPG-PKR 244
G VR + T+ G EADI+IN AGL+ADEI+++ G +Y + PRKGEY + D+ + G KR
Sbjct: 179 GRVRKVHTSRGEYEADIVINCAGLHADEIAKLAGAEYVPLHPRKGEYILLDKKLQGLVKR 238
Query: 245 VLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKKLWPN 304
V+FPTPT ISKGI+V + G +++GP A+DL E K+ TTREGL++V E ++L P+
Sbjct: 239 VIFPTPTKISKGILVLPTVDGGILLGPTAEDLPEEMKDRPITTREGLEKVREFTRRLVPS 298
Query: 305 LPPRSKVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIA-YYVAELI 363
L S V++TF+GLRPE DF I+ E V F+NV RSPGLT+APA+A Y V ELI
Sbjct: 299 L-DFSLVVKTFSGLRPESPQKDFFIKVSETVKNFVNVMATRSPGLTAAPAVAKYVVEELI 357
Query: 364 ERELDVKLIEKKNWNPYRRDFPRIAMLPPEKANELIRRNPLYGKIVCRCNTVSEGEIVEA 423
+ ++ + L +KK++ P R+ + LP E+ I R+P G++VC CN V+E EIVEA
Sbjct: 358 QEKMRIPLEKKKDFKPERKRIVHYSELPLEEWRREIERDPRAGRLVCFCNEVTEKEIVEA 417
Query: 424 INRMKFIGVKSPSIDSVKFRTKATTGTCQGAFCRPRIIQILAREYKLPPWKIRLNVPGSE 483
I R + +++ VKFRT+A G CQG FC RI++IL RE + +I++ S
Sbjct: 418 IRR------GARTLNGVKFRTRAMFGRCQGGFCMARILKILERELGVDMSEIKMKSENSW 471
Query: 484 IGIGDVK 490
+ G V+
Sbjct: 472 VVNGKVR 478
>emb|CAB88982.1| (AL353864) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 467
Score = 243 bits (614), Expect = 3e-63
Identities = 162/451 (35%), Positives = 242/451 (52%), Gaps = 13/451 (2%)
Query: 7 VAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPMR 66
VAI+GAG+ G +IAR L+ + L V L+E DVG G SKANTAI+H G+D P +
Sbjct: 16 VAIVGAGVVGCAIARRLAHHPGLRVALVEAQDDVGQGTSKANTAILHTGFDAVPGS--LE 73
Query: 67 ARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVDK 126
AR +G+R + + IP GAL+VA +EE L +L E+ +N + R++
Sbjct: 74 ARLVREGSRELAAYAAESGIPVERVGALLVAWDEEQLAALPRLAEKARRNEYHDTRVLGA 133
Query: 127 EELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKVKRG 186
+L+ EP L ALGAL VP I +A AV GV +LE + G
Sbjct: 134 ADLYAREPRLGPGALGALHVPGESIICSWTTTLAYATQAVRAGVDLYLEAPITHAGHADG 193
Query: 187 EVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDEGIPG-PKRV 245
V L+T G + A ++NAAGL+AD + R +G D F + PR+G+ + D + +
Sbjct: 194 -VHRLDTPRGPLHARRLVNAAGLHADTLDRSLGHDDFTVTPRRGQLVVHDTFARALVRHI 252
Query: 246 LFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKKLWPNL 305
L P PT + KG++V + G++++GP A+DL ++K +T +T EGL + E +++ P L
Sbjct: 253 LLPVPTALGKGVLVAPTVYGNVLLGPTAEDL--DDKGDTGSTAEGLRRLREQGRRILPAL 310
Query: 306 PPRSKVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYYVAELIER 365
+V +AGLR TG D A G++ V GIRS GLT++ AIA +V L+
Sbjct: 311 -LEEEVTAVYAGLR-AATGHDDYRIAAHPGQGYVTVGGIRSTGLTASLAIAAHVTGLL-A 367
Query: 366 ELDVKLIEKKNWNPYRRDFPRIAMLPPEKANELIRRNPLYGKIVCRCNTVSEGEIVEAIN 425
+ + L ++ P R A P + +L+ +P YG +VC C VS GEI +A+
Sbjct: 368 DTGLDLGARRPLEPVRMPNLGEAFPRPHQRPDLVAADPEYGTLVCHCERVSRGEIRDALA 427
Query: 426 RMKFIGVKSPSIDSVKFRTKATTGTCQGAFC 456
V S+D ++ RT+A G CQG +C
Sbjct: 428 G----PVPPRSLDGLRRRTRARAGRCQGFYC 454
>gi|11498926 glycerol-3-phosphate dehydrogenase (glpA) [Archaeoglobus fulgidus]
>gi|7483310|pir||G69415 glycerol-3-phosphate
dehydrogenase (glpA) homolog - Archaeoglobus fulgidus
>gi|2649249|gb|AAB89918.1| (AE001012)
glycerol-3-phosphate dehydrogenase (glpA) [Archaeoglobus
fulgidus]
Length = 453
Score = 207 bits (521), Expect = 3e-52
Identities = 158/483 (32%), Positives = 252/483 (51%), Gaps = 40/483 (8%)
Query: 7 VAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYP-- 64
V I+GAG+TG+ IA+ LSKY +L+V ++E+ G +K + IIH P + P
Sbjct: 4 VLIVGAGVTGSFIAKELSKY-HLDVVVVERKSGPGLDQTKGCSGIIH------PLQLPFG 56
Query: 65 -MRARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRI 123
++++ C+KGN + ++L G ++VA F + + NGV R+
Sbjct: 57 SLKSKLCLKGNAMMDAEAEELGFTFKRVGLILVATNIITFLAIPLIQLYFRLNGVVSKRL 116
Query: 124 VDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKV 183
K+++ ++ P L + G L++P G + P+ + + A ANGV+ H + +V GI+
Sbjct: 117 -GKKKVLEMVPNLREDIWGGLFLPTAGVVNPVEMTASAIRFAKANGVEVHYDCEVVGIE- 174
Query: 184 KRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDE-GIPGP 242
++GE ++T G EA +IN AGLYADEI++MVG + I P KG + +F E G
Sbjct: 175 RKGEGFIVKTTKGDFEARCVINCAGLYADEIAKMVGYE-MTITPGKGTHIVFAERGFSNH 233
Query: 243 KRVLFPT-PTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKKL 301
V P P +KG G + GPN D+ E KE+T+ +E ++ + E L
Sbjct: 234 LTVAIPLKPNKRTKGGGALIGFDGKPLWGPNLIDV--ESKEDTSVKKEEIEGIIEKFSPL 291
Query: 302 WPNLPPRSKVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYYVAE 361
+ P V+ +AGLR G DF+I + V GFINVAGI+SPGLT+APAIA V E
Sbjct: 292 FTRKP--EGVVAFYAGLR-SIAGTDFVIN--QPVEGFINVAGIQSPGLTAAPAIAEMVIE 346
Query: 362 LIERELDVKLIEKKNWNPYRRDFPRIAMLPPEKANELIRRNPLYGKIVCRCNTVSEGEIV 421
++ +++ E+ R ++ R+A L ++ + I N +G+IVC CN VS+ EI+
Sbjct: 347 MLSSRFELRRKEEIK----RPEWIRLAELDEDEVRKAIEENEDFGEIVCLCNMVSKAEIL 402
Query: 422 EAINRMKFIGVKSPSIDSVKFRTKATTGTCQGAFCRPRIIQILAREYKLPPWKIRLNVPG 481
A+ + D+V+ T A C+ C I+Q++ + K R + G
Sbjct: 403 RAVE-------EGECFDTVRHLTWAGMDCCK---CHAEIMQLIEEK----TGKARKEIEG 448
Query: 482 SEI 484
S+I
Sbjct: 449 SDI 451
>sp|P47285|Y039_MYCGE HYPOTHETICAL PROTEIN MG039 >gi|1361521|pir||C64204
glycerol-3-phosphate dehydrogenase GUT2 homolog -
Mycoplasma genitalium >gi|3844649|gb|AAC71255.1|
(U39683) conserved hypothetical protein [Mycoplasma
genitalium]
Length = 384
Score = 185 bits (464), Expect = 1e-45
Identities = 129/382 (33%), Positives = 209/382 (53%), Gaps = 19/382 (4%)
Query: 7 VAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPMR 66
V I+G G+ G S A LS+Y+ L+V L+EKN +G S+AN+ +IH G D +P K +
Sbjct: 6 VLIVGGGVIGTSCAYELSQYK-LKVALLEKNAFLGCETSQANSGVIHSGIDPNPNK--LT 62
Query: 67 ARFCVKGNRIWHE-WVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVP--EMRI 123
A++ + G +IW E W K+L P L+VA E+ +L L ERGIKN +P ++I
Sbjct: 63 AKYNILGRKIWIEDWFKKLIFPRKKIATLIVAFNNEEKLQLNLLKERGIKNSIPVENIQI 122
Query: 124 VDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKV 183
+D+++ EP +N N + +L V I P+ A L ++ N V + KV I++
Sbjct: 123 LDQQQTLLQEPFINPNVVASLKVEGSWLIDPLIATKCLALASLQNNVAIYSNKKVTKIEI 182
Query: 184 KRGE----VRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIF-DEG 238
+ ET F + +I+AAG YAD ++ +D F+ RKG+Y + ++
Sbjct: 183 DSDDDFLVFINNETTPQF-KTKKLIDAAGHYADWLAETTQVDNFKQTTRKGQYLVLKNQN 241
Query: 239 IPGPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGA 298
++F PT KG+VV + G++++GPNA + E+ + + + ++++
Sbjct: 242 NLKINTIIFMVPTIHGKGVVVAEMLDGNILVGPNAVE-GIEKNKTRSIDLDSINQIKTIG 300
Query: 299 KKLWPNLPPRSKVIRTFAGLRP-EPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAY 357
KK+ P+L + + +FAG R + DF+IR + FI + G++SPGLTS+PAIA
Sbjct: 301 KKMVPSLQFENSIY-SFAGSRAIDIETNDFVIRTAKSNPNFIILGGMKSPGLTSSPAIAK 359
Query: 358 YVAELIERELDVKLIEKKNWNP 379
EL L++KL +K NWNP
Sbjct: 360 RAVEL----LNLKLKKKINWNP 377
>pir||B83461 hypothetical protein PA1489 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947443|gb|AAG04878.1|AE004577_13
(AE004577) hypothetical protein [Pseudomonas aeruginosa]
Length = 396
Score = 178 bits (446), Expect = 2e-43
Identities = 128/404 (31%), Positives = 207/404 (50%), Gaps = 24/404 (5%)
Query: 72 KGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVDKEELFQ 131
+G R + + +L +P + GALV A +ED L ++E+ NGV ++R V ++E+
Sbjct: 3 EGYREYRDIHARLNLPLLETGALVAAWSDEDLARLPAIVEQAHGNGVDDVRQVGRDEVLA 62
Query: 132 LEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKVKRGEVRGL 191
LEP L N LGA+ VP + P A +A ++ A+A+G + + +V GE L
Sbjct: 63 LEPQLAGNVLGAVRVPGEHLVDPWSAPLAYLQQALAHGAEACFDVEVLDGAFDGGEWL-L 121
Query: 192 ETNDGFIEADIIINAAGLYADEI-SRMVGLDYFEIRPRKGEYWIFDEGIPGPKR-VLFPT 249
T G + A +IN AGL+ D++ R++G F I PRKG++ +FD+ R +L P
Sbjct: 122 HTRRGDLRASQVINCAGLFGDQLEQRLLGAASFAIHPRKGQFVVFDKAAAALLRHILLPV 181
Query: 250 PTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKKLWPNLPPRS 309
P +KG+V T + G+L+ GP A++ +++E + L + + A + P L
Sbjct: 182 PNERTKGVVFTRTVFGNLLAGPTAEE--QDDREQARVDSDTLQRLIDAAVERIPGL-RGM 238
Query: 310 KVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYYVAELIERELDV 369
V T+AGLRP ++ IR + + +I+V GIRS GLT+A IA +V L + E
Sbjct: 239 PVTATYAGLRPASEKKEYRIR-QVDGRNWISVGGIRSTGLTAALGIARHVYRLYQGERFH 297
Query: 370 KLIEKKNWNPYRRDFPRIAMLPPEKANELIR--RNPLYGKIVCRCNTVSEGEIVEAINRM 427
+ + + W P++ P A L R + P Y +IVC C V+ EI+ A+
Sbjct: 298 EAVREPLW-------PQV----PNLAEHLPRDWQRPGYDEIVCHCEMVTRREILAALEG- 345
Query: 428 KFIGVKSPSIDSVKFRTKATTGTCQGAFCRPRIIQILAREYKLP 471
+ + +K RT+A G CQG +C R+ ++ A P
Sbjct: 346 ---PLPAGDFGGLKRRTRACMGRCQGFYCNARVAELSAGRLAQP 386
>sp|P75063|Y039_MYCPN HYPOTHETICAL PROTEIN MG039 HOMOLOG (D09_ORF384)
>gi|2146139|pir||S73429 glycerol-3-phospate
dehydrogenase glpD, aerob induced - Mycoplasma
pneumoniae (strain ATCC 29342)
>gi|1673759|gb|AAB95751.1| (AE000012)
glycerol-3-phospate dehydrogenase [Mycoplasma
pneumoniae]
Length = 384
Score = 161 bits (404), Expect = 1e-38
Identities = 122/380 (32%), Positives = 204/380 (53%), Gaps = 17/380 (4%)
Query: 7 VAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPMR 66
V I+G G+ G + A LS+Y+ L+V L+EK+ + S AN+ +IH G D +P K +
Sbjct: 6 VLIVGGGVIGCATAYELSQYK-LKVTLVEKHHYLAQETSHANSGVIHTGIDPNPHK--LT 62
Query: 67 ARFCVKGNRIW-HEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGV--PEMRI 123
A++ + G ++W + + K+L P L+VA E + ++LE L +RGI N + ++++
Sbjct: 63 AKYNILGKKLWLNTYFKRLGFPRQKIRTLIVAFNEMEREQLEVLKQRGIANQINLEDIQM 122
Query: 124 VDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKV 183
+ KEE +LEP +N + L + I P+ A L A N V+ T+V I
Sbjct: 123 LSKEETLKLEPYVNPEIVAGLKIEGSWAIDPVLASKCLALAAQQNKVQICTNTEVTNISK 182
Query: 184 KRGEVRGLETNDGF---IEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIF-DEGI 239
+ + TN+ + II+AAG YAD ++ + D FE R+G+Y + ++G
Sbjct: 183 QVDGTYLVWTNNETTPSFKVKKIIDAAGHYADYLAHLAKADDFEQTTRRGQYVVVTNQGE 242
Query: 240 PGPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAK 299
++F PT KG++V+ + G+ ++GP A D +++ T++ + + K
Sbjct: 243 LHLNSMVFMVPTIHGKGVIVSPMLDGNFLVGPTALD-GVDKEATRYITKDAPCMLTKIGK 301
Query: 300 KLWPNLPPRSKVIRTFAGLRP-EPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYY 358
+ P+L + +I +FAG RP + DFIIR F+ + G++SPGLT+APAI
Sbjct: 302 HMVPSLNINNALI-SFAGSRPIDKATNDFIIRVAHNDPDFVILGGMKSPGLTAAPAI--- 357
Query: 359 VAELIERELDVKLIEKKNWN 378
V E + R L+ KL +K NWN
Sbjct: 358 VREAV-RLLNWKLTKKPNWN 376
>emb|CAC12250.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 377
Score = 160 bits (401), Expect = 3e-38
Identities = 116/381 (30%), Positives = 199/381 (51%), Gaps = 31/381 (8%)
Query: 4 RTKVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKY 63
R + +IGAG+ G ++A LSKY + V++ EKN +G S N+ ++H G Y
Sbjct: 9 RANIVVIGAGVVGLAVAFELSKYSD-SVYVFEKNKIIGAETSSHNSGVVHSGI-----YY 62
Query: 64 P---MRARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPE 120
P ++A +KGN + ++ ++ IP G L+VA + + ELE L+ G NG+
Sbjct: 63 PKGSLKAELSIKGNAMLYQLCREHGIPCKRLGKLIVANGDRELRELEGLMRNGNNNGIEG 122
Query: 121 MRIVDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKG 180
+ ++D + + ++EP + A A++VP G I P + NG L T+V G
Sbjct: 123 LEMLDGDGVKRMEPSIKAEA--AIYVPSTGIIEPTELMNYFHAGFTKNGGIVALNTEVTG 180
Query: 181 IKVKRGE--VRGLETNDGF-IEADIIINAAGLYADEISRMVGLDY----FEIRPRKGEYW 233
I+ + + G+ F + + IIN+AGL++D I+ M GLD + + KG+Y+
Sbjct: 181 IRQSKEGYIIDGISAGQKFSVACNTIINSAGLHSDRIAEMAGLDVDALGYRLNYVKGDYF 240
Query: 234 IFDEGIPGPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDE 293
G P + +++P P GI +T ++SG + +GPNA + + + + +
Sbjct: 241 RI-SGKPPVRMLVYPIPEASGLGIHLTPDLSGSVRLGPNAYHVVRLDYRVQSDVMDFIAS 299
Query: 294 VWEGAKKLWPNLPPRSKVIRTFAGLRP---EPTGG--DFIIR--AEEEVWGFINVAGIRS 346
V ++ P++ + + +G+RP E +G DFIIR A+ + FIN+ GI S
Sbjct: 300 V----RRFLPSISDYN-IHEDSSGIRPQLKEQSGSYRDFIIRNEADHGLPNFINLIGIES 354
Query: 347 PGLTSAPAIAYYVAELIEREL 367
PGLT++PAIA +V+E+ E+
Sbjct: 355 PGLTASPAIAEFVSEMYRDEI 375
>pir||T51272 hypothetical protein T8M16_170 - Arabidopsis thaliana
>gi|9663003|emb|CAC00747.1| (AL390921) putative protein
[Arabidopsis thaliana]
Length = 483
Score = 120 bits (297), Expect = 5e-26
Identities = 105/407 (25%), Positives = 195/407 (47%), Gaps = 57/407 (14%)
Query: 4 RTKVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKY 63
R +IGAG+ G ++AR LS EV +++ G S N+ ++H G P
Sbjct: 79 RVDTVVIGAGVVGLAVARELS-LRGREVLILDAASSFGTVTSSRNSEVVHAGIYYPPNS- 136
Query: 64 PMRARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRI 123
++A+FCV+G + +++ + EIPH G L+VA + +L+ L+ G +N V +R+
Sbjct: 137 -LKAKFCVRGRELLYKYCSEYEIPHKKIGKLIVATGSSEIPKLDLLMHLGTQNRVSGLRM 195
Query: 124 VDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVE------------------NA 165
++ E ++EP L + AL P G + +++LVE A
Sbjct: 196 LEGFEAMRMEPQL--RCVKALLSPESGILDTHSFMLSLVEKSFDFMVYRDNNNLRLQGEA 253
Query: 166 VANGVKTHLETKVKGIKVKRGEVRGLETNDGFIEA------------DIIINAAGLYADE 213
N T V +V+ ++ + F E+ ++++N+AGL A
Sbjct: 254 QNNHATFSYNTVVLNGRVEEKKMHLYVADTRFSESRCEAEAQLELIPNLVVNSAGLGAQA 313
Query: 214 IS-RMVGLDYFEI---RPRKGEYWIFDEGIPGP--KRVLFPTPTPISKGIVVTTEISGHL 267
++ R+ GLD+ + +G Y+ GI P ++++P P G+ VT +++G +
Sbjct: 314 LAKRLHGLDHRFVPSSHYARGCYFTL-SGIKAPPFNKLVYPIPEEGGLGVHVTVDLNGLV 372
Query: 268 MIGPNAKDLSPEEKENTATTR-------EGLDEVWEGAKKLWPNLPPRSKVIRTFAGLRP 320
GP+ + + + ++ + + ++ + +K +P+L S + ++G+RP
Sbjct: 373 KFGPDVEWIECTDDTSSFLNKFDYRVNPQRSEKFYPEIRKYYPDLKDGS-LEPGYSGIRP 431
Query: 321 EPTG-----GDFIIRAEEE--VWGFINVAGIRSPGLTSAPAIAYYVA 360
+ +G DF+I+ EE V G +N+ GI SPGLTS+ AIA ++A
Sbjct: 432 KLSGPKQSPADFVIQGEETHGVPGLVNLFGIESPGLTSSLAIAEHIA 478
>pir||G75122 sarcosine oxidase, chain beta (soxb) PAB1843 - Pyrococcus abyssi
(strain Orsay) >gi|5458207|emb|CAB49696.1| (AJ248285)
sarcosine oxidase, subunit beta (soxB) [Pyrococcus
abyssi]
Length = 382
Score = 108 bits (266), Expect = 2e-22
Identities = 103/380 (27%), Positives = 172/380 (45%), Gaps = 18/380 (4%)
Query: 4 RTKVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKY 63
R++V +IG GI G SIA L+K ++V ++EK +G G + I ++D+
Sbjct: 5 RSEVVVIGGGIVGVSIAHELAK-RGVDVTVLEKR-FIGSGSTFRCGTGIRQQFNDEANVR 62
Query: 64 PMRARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRI 123
M+ + +W ++ ++ G L + +EE+ + ++ +E K GVP R+
Sbjct: 63 VMK-----RSVELWKKYSEEYNFSFKQTGYLFLLYDEEEVETFKRNIEIQNKFGVPT-RL 116
Query: 124 VDKEELFQLEPGLN-RNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIK 182
+ EE ++ P L+ + A W P G+ P A A A G K T+VKG
Sbjct: 117 ITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAIKAREYGAKLLEYTEVKGFI 176
Query: 183 VKRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDY-FEIRPRKGEYWIFDEGIPG 241
++ GE++G++TN G I+ I++NA +A I+ M G+ I P K + I P
Sbjct: 177 IENGEIKGVKTNRGTIKTGIVVNATNAWAKLINAMAGIKVKIPIEPYKHQAVITQ---PI 233
Query: 242 PKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKKL 301
+ + P G T+ +IG ++ P + T E L EV K+
Sbjct: 234 KRGTINPMVISFKYGHAYLTQTFHGGIIGGIGYEIGP--TYDLTPTYEFLREVSYYFTKI 291
Query: 302 WPNLPPRSKVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYYVAE 361
P L V+RT+AG + + I EE+ + AG G APA+ +A+
Sbjct: 292 IPAL-KNLLVLRTWAGYYAKTPDSNPAIGKIEELSDYYIAAGFSGHGFMMAPAVGEMIAD 350
Query: 362 LIERELDVKLIEKKNWNPYR 381
LI + +E ++PYR
Sbjct: 351 LITKGKSKLPVEW--YDPYR 368
>pir||E83003 hypothetical protein PA5145 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951445|gb|AAG08530.1|AE004927_8
(AE004927) hypothetical protein [Pseudomonas aeruginosa]
Length = 368
Score = 107 bits (264), Expect = 4e-22
Identities = 103/378 (27%), Positives = 178/378 (46%), Gaps = 36/378 (9%)
Query: 7 VAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPMR 66
V ++GAG G + A L++ + V + E+ VG S N+ +IH G P ++
Sbjct: 6 VLVVGAGALGLACAARLAEAGH-GVLVAERERLVGSHTSSRNSEVIHAGLYYPPGS--LK 62
Query: 67 ARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVDK 126
A C++G + W + + H G L+VA+EE + + L+ L GV ++ +D
Sbjct: 63 ADLCLEGRERLYAWCARHGVGHRRIGKLLVAVEENERERLQALAANARACGVDDLMPLDG 122
Query: 127 EELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKVKRG 186
L LEP + + AL P G I + +L A +G + L+T+V ++ G
Sbjct: 123 TTLRALEPQV--RGVAALLSPSTGIIDSHAYLQSLQAVAERHGAQLALDTRVDRLERHAG 180
Query: 187 --EVRGLETNDGF-IEADIIINAAGLYADEIS-RMVGLDYFEIRPR--------KGEYWI 234
G + F + A ++NA GL+A ++ R GLD PR +G Y+
Sbjct: 181 GWRAEGQSVGEAFRLRAGWVVNAGGLFAQALAQRTEGLD-----PRLVPALHLCQGRYFS 235
Query: 235 FDEGIPGPKRVLFPTPTPISKGIVV--TTEISGHLMIGPNAKDLSPEEKENTATTREGLD 292
+ P + +++P P + G+ + T ++ G L GP+ + + + R
Sbjct: 236 YSGRSPF-RHLVYPMPEARTAGLGIHATLDLGGQLRFGPDVNYVDNLDYRVDESLRPAFA 294
Query: 293 EVWEGAKKLWPNLPPRSKVIRTFAGLRPEPTG-----GDFIIR--AEEEVWGFINVAGIR 345
+V + +P + PR ++ +AG+RP+ G DFII+ AE + G +N+ GI
Sbjct: 295 QV---ISRYFPGIDPR-RLAAGYAGIRPKLGGPGEPAADFIIQTPAEHGLPGLVNLFGIE 350
Query: 346 SPGLTSAPAIAYYVAELI 363
SPGLT++ A+A VA +
Sbjct: 351 SPGLTASLALAERVARAL 368
>dbj|BAB14174.1| (AK022680) unnamed protein product [Homo sapiens]
Length = 463
Score = 106 bits (263), Expect = 5e-22
Identities = 79/283 (27%), Positives = 140/283 (48%), Gaps = 20/283 (7%)
Query: 7 VAIIGAGITGASIARVLS-KYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPM 65
+ I+G GI G + AR L ++ +L + ++EK D+ + N+ +IH G PE +
Sbjct: 51 IVIVGGGIVGLASARALILRHPSLSIGVLEKEKDLAVHQTGHNSGVIHSGIYYKPES--L 108
Query: 66 RARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVD 125
+A+ CV+G + +E+ +Q I + G L+VA+E+E+ L+ L E+G++NGVP +R++
Sbjct: 109 KAKLCVQGAALLYEYCQQKGISYKQCGKLIVAVEQEEIPRLQALYEKGLQNGVPGLRLIQ 168
Query: 126 KEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKV-K 184
+E++ + EP L A+ P G + ++ ++ G +VKGI++ K
Sbjct: 169 QEDIKKKEPYC--RGLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSVLTNFEVKGIEMAK 226
Query: 185 RGEVRGLE----------TNDGFIEADIIINAAGLYADEISRMVGLDYF-EIRPRKGEYW 233
R ++ T I ++ AGLY+D IS + G I P +G+Y
Sbjct: 227 ESPSRSIDGMQYPIVIKNTKGEEIRCQYVVTCAGLYSDRISELSGCTPDPRIVPFRGDYL 286
Query: 234 IF-DEGIPGPKRVLFPTPTPISK--GIVVTTEISGHLMIGPNA 273
+ E K ++P P G+ T + G + +GPNA
Sbjct: 287 LLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPRMDGSIWLGPNA 329
>sp|P43799|GLPA_HAEIN ANAEROBIC GLYCEROL-3-PHOSPHATE DEHYDROGENASE SUBUNIT A (G-3-P
DEHYDROGENASE) >gi|1074156|pir||E64086
glycerol-3-phosphate dehydrogenase (EC 1.1.99.5) chain
A, anaerobic - Haemophilus influenzae (strain Rd KW20)
>gi|1573687|gb|AAC22345.1| (U32751) anaerobic
glycerol-3-phosphate dehydrogenase, subunit A (glpA)
[Haemophilus influenzae Rd]
Length = 563
Score = 105 bits (259), Expect = 1e-21
Identities = 121/502 (24%), Positives = 222/502 (44%), Gaps = 65/502 (12%)
Query: 5 TKVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYD---DDPE 61
T V IIG G TGA IAR + ++ L+E+ D+ G + N ++H G +D E
Sbjct: 19 TDVIIIGGGATGAGIARDCA-LRGIDCILLERR-DIATGATGRNHGLLHSGARYAVNDQE 76
Query: 62 KYPMRARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEM 121
A C+K NRI + + L + L E+ D + LE K+G+ +
Sbjct: 77 S----AEECIKENRILRKIARHCVDE---TEGLFITLPEDSLDYQKTFLESCAKSGI-DA 128
Query: 122 RIVDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGI 181
+ +D E +EP +N + +GA+ VP G I P + + +A NG K +VK +
Sbjct: 129 QAIDPELAKIMEPSVNPDLVGAVVVP-DGSIDPFRLTASNMMDATENGAKMFTYCEVKNL 187
Query: 182 KVKRGEVRGLETND------GFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIF 235
+ G+V G+ D A +++NA G++ I+ L ++ P KG +
Sbjct: 188 IREGGKVIGVNAYDHKNRRERQFFAPLVVNAGGIWGQGIAEYADLK-IKMFPAKGALLVM 246
Query: 236 DEGIPGPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVW 295
I K V+ P I+V + +IG + + ++ +N T E +D ++
Sbjct: 247 GHRI--NKLVINRCRKPADADILVPGDTI--CVIGTTSSRIPYDQIDNMEVTPEEVDILF 302
Query: 296 EGAKKLWPNLPPRSKVIRTFAGLRP------EPTGGD------FIIRAEEE-VWGFINVA 342
+KL P+L ++V+R +AG+RP +P+G + + AE + + GFI +
Sbjct: 303 REGEKLAPSL-RHTRVLRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITIT 361
Query: 343 GIRSPGLTSAPAIAYYVAELIERELD--VKLIEKKNWNP-----YRRDFPRIAMLPP--- 392
G + L + +A + +L+ ++L+ + + + P + ++ LP
Sbjct: 362 GGK---LMTYRLMAEWATDLVCKKLNKTARCVTAEQPLPGSTESRQETNQKVISLPSTIR 418
Query: 393 --------EKANELIRRNPLYGKIVCRCNTVSEGEIVEAINRMKFIGVKSPSIDSVKFRT 444
+A L+ + L +VC C V+ GE+ A++ + ++ ++ R+
Sbjct: 419 YSAVYRHGSRATRLLEKERLDRSMVCECEAVTAGEVRYAVDELDV-----NNLVDLRRRS 473
Query: 445 KATTGTCQGAFCRPRIIQILAR 466
+ GTCQ C R ++ R
Sbjct: 474 RVGMGTCQAELCACRAAGLMNR 495
>pir||F71008 probable sarcosine oxidase - Pyrococcus horikoshii
>gi|3257787|dbj|BAA30470.1| (AP000006) 382aa long
hypothetical sarcosine oxidase [Pyrococcus horikoshii]
Length = 382
Score = 102 bits (251), Expect = 1e-20
Identities = 100/380 (26%), Positives = 170/380 (44%), Gaps = 18/380 (4%)
Query: 4 RTKVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKY 63
++++ +IG GI G +IA L+K EV +IEK +G G + I ++D+
Sbjct: 5 KSEIVVIGGGIVGVTIAHELAK-RGEEVTVIEKR-FIGSGSTFRCGTGIRQQFNDEANVR 62
Query: 64 PMRARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRI 123
M+ + +W ++ ++ G L + ++E+ ++ +E K GVP ++
Sbjct: 63 VMK-----RSVELWKKYSEEYGFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPT-KL 116
Query: 124 VDKEELFQLEPGLN-RNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIK 182
+ EE ++ P L+ + A W P G+ P A A A G K T+VKG
Sbjct: 117 ITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFL 176
Query: 183 VKRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGL-DYFEIRPRKGEYWIFDEGIPG 241
++ E++G++TN G I+ I++NA +A+ I+ M G+ I P K + I P
Sbjct: 177 IENNEIKGVKTNKGIIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQ---PI 233
Query: 242 PKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKKL 301
+ + P G T+ +IG ++ P + T E L EV K+
Sbjct: 234 KRGTINPMVISFKYGHAYLTQTFHGGIIGGIGYEIGP--TYDLTPTYEFLREVSYYFTKI 291
Query: 302 WPNLPPRSKVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYYVAE 361
P L ++RT+AG + + I EE+ + AG G APA+ VAE
Sbjct: 292 IPAL-KNLLILRTWAGYYAKTPDSNPAIGRIEELNDYYIAAGFSGHGFMMAPAVGEMVAE 350
Query: 362 LIERELDVKLIEKKNWNPYR 381
LI + +E ++PYR
Sbjct: 351 LITKGKTKLPVEW--YDPYR 368
>sp|P37339|YGAF_ECOLI HYPOTHETICAL 48.6 KD PROTEIN IN ALPA-GABP INTERGENIC REGION
>gi|7449338|pir||E65045 hypothetical protein in gabP
3'region - Escherichia coli (strain K-12)
>gi|1789014|gb|AAC75707.1| (AE000351) orf, hypothetical
protein [Escherichia coli K12]
Length = 444
Score = 98.7 bits (242), Expect = 1e-19
Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 10/270 (3%)
Query: 9 IIGAGITGASIA-RVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPMRA 67
IIG GI G S A +++ Y + + L+EK + N+ +IH G P ++A
Sbjct: 28 IIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGS--LKA 85
Query: 68 RFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVDKE 127
+FC+ GNR + Q I + G ++VA + + + + L ER NG+ E ++ +
Sbjct: 86 QFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGI-EREWLNAD 144
Query: 128 ELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKVKRGE 187
EL + EP N LG ++VP G ++ A+ + + G + +V G+ +
Sbjct: 145 ELREREP--NITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNG 202
Query: 188 VRGLETNDGFIEADIIINAAGLYADEISRMVGLD-YFEIRPRKGEYW-IFDEGIPGPKRV 245
V G EA +I+ +GL AD + +M+GL+ F I P +GEY+ + E +
Sbjct: 203 VVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHL 262
Query: 246 LFPTPTPISK--GIVVTTEISGHLMIGPNA 273
++P P P G+ +T I G + +GPNA
Sbjct: 263 IYPIPDPAMPFLGVHLTRMIDGSVTVGPNA 292
>dbj|BAA16521.1| (D90890) similar to [SwissProt Accession Number P37339]
[Escherichia coli]
Length = 422
Score = 98.7 bits (242), Expect = 1e-19
Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 10/270 (3%)
Query: 9 IIGAGITGASIA-RVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPMRA 67
IIG GI G S A +++ Y + + L+EK + N+ +IH G P ++A
Sbjct: 6 IIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGS--LKA 63
Query: 68 RFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVDKE 127
+FC+ GNR + Q I + G ++VA + + + + L ER NG+ E ++ +
Sbjct: 64 QFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGI-EREWLNAD 122
Query: 128 ELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKVKRGE 187
EL + EP N LG ++VP G ++ A+ + + G + +V G+ +
Sbjct: 123 ELREREP--NITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNG 180
Query: 188 VRGLETNDGFIEADIIINAAGLYADEISRMVGLD-YFEIRPRKGEYW-IFDEGIPGPKRV 245
V G EA +I+ +GL AD + +M+GL+ F I P +GEY+ + E +
Sbjct: 181 VVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHL 240
Query: 246 LFPTPTPISK--GIVVTTEISGHLMIGPNA 273
++P P P G+ +T I G + +GPNA
Sbjct: 241 IYPIPDPAMPFLGVHLTRMIDGSVTVGPNA 270
>gb|AAA83864.1| (M20938) glycerol-3-phosphate dehydrogenase subunit A [Escherichia
coli]
Length = 542
Score = 97.5 bits (239), Expect = 3e-19
Identities = 120/500 (24%), Positives = 212/500 (42%), Gaps = 65/500 (13%)
Query: 7 VAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYD---DDPEKY 63
V IIG G TGA IAR + L V L+E++ D+ G + N ++H G D E
Sbjct: 11 VIIIGGGATGAGIARDCA-LRGLRVILVERH-DIATGATGRNHGLLHSGARYAVTDAES- 67
Query: 64 PMRARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRI 123
AR C+ N+I + P L + L E+D + + G+
Sbjct: 68 ---ARECISENQILKRIARHCVEP---TNGLFITLPEDDLSFQATFIRACEEAGI-SAEA 120
Query: 124 VDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKV 183
+D ++ +EP +N +GA+ VP G + P A + +A +G +V G+
Sbjct: 121 IDPQQARIIEPAVNPALIGAVKVPD-GTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIR 179
Query: 184 KRGEVRGLETNDGF------IEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDE 237
+ V G+ + + A +++NAAG++ I+ L + P KG I D
Sbjct: 180 EGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLR-IRMFPAKGSLLIMDH 238
Query: 238 GIPGPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEG 297
I + V+ P I+V + +IG + + E ++ T E +D +
Sbjct: 239 RIN--QHVINRCRKPSDADILVPGDTIS--LIGTTSLRIDYNEIDDNRVTAEEVDILLRE 294
Query: 298 AKKLWPNLPPRSKVIRTFAGLRP------EPTGGDF------IIRAEEE-VWGFINVAGI 344
+KL P + +++++R ++G+RP +P+G + + AE + + GFI + G
Sbjct: 295 GEKLAPVMA-KTRILRAYSGVRPLVASDDDPSGRNLSRGIVLLDHAERDGLDGFITITGG 353
Query: 345 RSPGLTSAPAIAYYVAELIERELD-------VKLIEKKNWNPYRRDFPRIAMLP-PEKAN 396
+ L + +A + + + R+L L + P ++ LP P + +
Sbjct: 354 K---LMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGS 410
Query: 397 ELIR---RNP-------LYGKIVCRCNTVSEGEIVEAINRMKFIGVKSPSIDSVKFRTKA 446
+ R R P L+ +VC C V+ GE+ A+ + S+ ++ RT+
Sbjct: 411 AVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNV-----NSLLDLRRRTRV 465
Query: 447 TTGTCQGAFCRPRIIQILAR 466
GTCQG C R +L R
Sbjct: 466 GMGTCQGELCACRAAGLLQR 485
>sp|P13032|GLPA_ECOLI ANAEROBIC GLYCEROL-3-PHOSPHATE DEHYDROGENASE SUBUNIT A (G-3-P
DEHYDROGENASE) >gi|65976|pir||DEECNA
glycerol-3-phosphate dehydrogenase (EC 1.1.99.5) chain
A, anaerobic [validated] - Escherichia coli
>gi|1788574|gb|AAC75301.1| (AE000314)
sn-glycerol-3-phosphate dehydrogenase (anaerobic), large
subunit [Escherichia coli K12]
>gi|1799588|dbj|BAA16060.1| (D90855)
glycerol-3-phosphate dehydrogenase (EC 1.1.99.5) chain
A, anaerobic [Escherichia coli]
Length = 542
Score = 97.5 bits (239), Expect = 3e-19
Identities = 120/500 (24%), Positives = 212/500 (42%), Gaps = 65/500 (13%)
Query: 7 VAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYD---DDPEKY 63
V IIG G TGA IAR + L V L+E++ D+ G + N ++H G D E
Sbjct: 11 VIIIGGGATGAGIARDCA-LRGLRVILVERH-DIATGATGRNHGLLHSGARYAVTDAES- 67
Query: 64 PMRARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRI 123
AR C+ N+I + P L + L E+D + + G+
Sbjct: 68 ---ARECISENQILKRIARHCVEP---TNGLFITLPEDDLSFQATFIRACEEAGI-SAEA 120
Query: 124 VDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKV 183
+D ++ +EP +N +GA+ VP G + P A + +A +G +V G+
Sbjct: 121 IDPQQARIIEPAVNPALIGAVKVPD-GTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIR 179
Query: 184 KRGEVRGLETNDGF------IEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDE 237
+ V G+ + + A +++NAAG++ I+ L + P KG I D
Sbjct: 180 EGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLR-IRMFPAKGSLLIMDH 238
Query: 238 GIPGPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEG 297
I + V+ P I+V + +IG + + E ++ T E +D +
Sbjct: 239 RIN--QHVINRCRKPSDADILVPGDTIS--LIGTTSLRIDYNEIDDNRVTAEEVDILLRE 294
Query: 298 AKKLWPNLPPRSKVIRTFAGLRP------EPTGGD------FIIRAEEE-VWGFINVAGI 344
+KL P + +++++R ++G+RP +P+G + + AE + + GFI + G
Sbjct: 295 GEKLAPVMA-KTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGG 353
Query: 345 RSPGLTSAPAIAYYVAELIERELD-------VKLIEKKNWNPYRRDFPRIAMLP-PEKAN 396
+ L + +A + + + R+L L + P ++ LP P + +
Sbjct: 354 K---LMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGS 410
Query: 397 ELIR---RNP-------LYGKIVCRCNTVSEGEIVEAINRMKFIGVKSPSIDSVKFRTKA 446
+ R R P L+ +VC C V+ GE+ A+ + S+ ++ RT+
Sbjct: 411 AVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNV-----NSLLDLRRRTRV 465
Query: 447 TTGTCQGAFCRPRIIQILAR 466
GTCQG C R +L R
Sbjct: 466 GMGTCQGELCACRAAGLLQR 485
>gb|AAK42656.1| Glycerol-3-phosphate dehydrogenase chain A (glpA) [Sulfolobus
solfataricus]
Length = 445
Score = 95.6 bits (234), Expect = 1e-18
Identities = 97/398 (24%), Positives = 175/398 (43%), Gaps = 49/398 (12%)
Query: 1 MGTRTKVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYD--- 57
M ++ V +IG G++G A L+ ++V L+++ D+G+G S ++H G
Sbjct: 14 MEIKSTVTVIGGGVSGLFTALDLA-LRGIDVTLVDRG-DIGYGTSGKFHGLLHSGARYAV 71
Query: 58 DDPEKYPMRARFCVKGNRIWHEWVKQLEIPHVWN--GALVVALEEEDFDELEKLLERGIK 115
DP+ AR C++ N+I + PH G + + + ++D E ++ K
Sbjct: 72 TDPDS----ARECIQENKIISKIA-----PHTVKDTGGVFLGITDDDLQFSETFIKALNK 122
Query: 116 NGVPEMRIVDKEELFQLEPGLNRNALGALWVP-----------IVGQIAPIPAVIALVEN 164
G+ E +++D +E+ Q EP +NR+ A+WVP V A + L N
Sbjct: 123 VGI-ESKVIDVKEVLQKEPFINRDTKMAIWVPDKVVYGYDLLASVAITASLNGAKILTYN 181
Query: 165 AVANGVKTHLETKVKGIKVKRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFE 224
V ++ + VKG+KV + + N I++DII+N AG ++ I +M GL+
Sbjct: 182 EVVEIIREN--NNVKGVKV----LDKINNNTNVIKSDIIVNTAGPWSFNIIKMAGLEEIP 235
Query: 225 IRPRKGEYWIFDEGIPGPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENT 284
I P G +FD+ + ++ P S G ++ + +G A + E+ +N
Sbjct: 236 IMPTAGIIVVFDKRV---NNMVINRLRPPSDGDIIVPYADSSI-LGTTATII--EDPDNF 289
Query: 285 ATTREGLDEVWEGAKKLWPNLPPRSKVIRTFAGLRP--------EPTGGDFIIRAEEEVW 336
+ E + + L P L +V+R++A +RP DF I E+
Sbjct: 290 TISDEDIAMLVNEGAYLIPKL-KNMRVVRSYASVRPLIKSEVSAREASRDFRIIDHEKEN 348
Query: 337 GFINVAGIRSPGLTSAPAIAYYVAELIERELDVKLIEK 374
G + + T+ VA+L+ +L +K K
Sbjct: 349 GLSGLVSVIGGKFTTGRLAGERVADLVSSKLGIKSASK 386
>gb|AAF60576.1| (AC006768) contains similarity to Mycoplasma genitalium
glycerol-3-phospate dehydrogenase (SW:P47285)
[Caenorhabditis elegans]
Length = 441
Score = 94.8 bits (232), Expect = 2e-18
Identities = 76/276 (27%), Positives = 131/276 (46%), Gaps = 13/276 (4%)
Query: 7 VAIIGAGITGASIAR-VLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPM 65
+ I+G GI G + AR +L + L+V LIEK ++ S N+ +IH G P +
Sbjct: 36 LVIVGGGIVGCATARQLLIEKPQLKVALIEKEKELAVHQSGHNSGVIHAGIYYTPGS--L 93
Query: 66 RARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVD 125
+A+ CV+G + +E+ + ++P+ G L+VA+E E+ L+ L R NG ++ ++D
Sbjct: 94 KAKLCVEGLDLSYEFFDKEKVPYKKTGKLIVAVEPEEVPRLDALFSRAQTNGCRDIEMID 153
Query: 126 KEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKVKR 185
++ +LEP + L ALW P G + E+ G K + ++ I
Sbjct: 154 SSKITELEP--HCRGLKALWSPHTGIVDWGYVTKRFGEDFEKRGGKIYTSYPLEKISDNH 211
Query: 186 GEVRGLETNDG----FIEADIIINAAGLYADEISRMVGLDYF-EIRPRKGEYWIF-DEGI 239
+ + G E +I AGL +D ++ + G +I P +GEY + E
Sbjct: 212 DPGYPIRVSSGPALAEFETKNLITCAGLQSDRVAALSGCSTDPKIVPFRGEYLLLKPEKR 271
Query: 240 PGPKRVLFPTPTPISK--GIVVTTEISGHLMIGPNA 273
K ++P P P G+ T ++G + +GPNA
Sbjct: 272 HLVKTNIYPVPDPRFPFLGVHFTPRMNGDIWLGPNA 307
>emb|CAC08409.1| (AL392177) SCD17A.05c, conserved hypothetical protein, len: 426 aa;
similar to TR:P74590 (EMBL:D90916) Synechocystis sp.
hypothetical 43.5 kDa protein SLL1495, 397 aa; fasta
scores: opt: 1264 z-score: 1402.4 E(): 0; 49.1% identity
in 401 aa overlap [St>
Length = 426
Score = 89.7 bits (219), Expect = 7e-17
Identities = 83/305 (27%), Positives = 140/305 (45%), Gaps = 21/305 (6%)
Query: 7 VAIIGAGITGASIARVLSKYE-NLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPM 65
V +IG GI G S A +++ V ++EK P + N+ +IH G P +
Sbjct: 22 VLVIGGGIVGLSTAYAITRAAPGTRVTVLEKEPGPARHQTGRNSGVIHSGVYYRPGS--L 79
Query: 66 RARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVD 125
+AR+ V+G ++ + I H G L+VA + + L L++RG +NG+P +R +
Sbjct: 80 KARYAVRGAAEMVKFCAEYGIDHAVTGKLIVATDRAELPRLHALVQRGRENGIP-VRELS 138
Query: 126 KEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKVKR 185
++ + EP + L A+ V G I AV + A A+G + +V + +
Sbjct: 139 GAQIQEYEPEV--RGLAAIHVGTTG-ICDYVAVAR--QLARASGAEIRYGAEVHRVDRRP 193
Query: 186 GEVRGLETNDG-FIEADIIINAAGLYADEISRMVGLDY-FEIRPRKGEYWIF--DEGIPG 241
G + T G + A +++N GL+ D I+R+ G D I P +GEY+ E + G
Sbjct: 194 GLGVAVRTRTGDVLRARVLVNCGGLHCDRIARLTGDDTGMRIVPFRGEYYELARPELVRG 253
Query: 242 PKRVLFPTPTPISK--GIVVTTEISGHLMIGPNAKDLSPEEKENTATTRE---GLDEVWE 296
+++P P P G+ +T I G + +GPNA E R G W
Sbjct: 254 ---LVYPVPDPAFPFLGVHLTRGIDGGVHVGPNAVPALAREGYGWGVVRPRELGATLAWP 310
Query: 297 GAKKL 301
G+ ++
Sbjct: 311 GSWRI 315
>pir||E82422 anaerobic glycerol-3-phosphate dehydrogenase, chain A VCA0747
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9658168|gb|AAF96645.1| (AE004403) anaerobic
glycerol-3-phosphate dehydrogenase, subunit A [Vibrio
cholerae]
Length = 547
Score = 87.4 bits (213), Expect = 3e-16
Identities = 118/503 (23%), Positives = 199/503 (39%), Gaps = 70/503 (13%)
Query: 5 TKVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYP 64
T V IIG G TG I R + L L+EK+ D+ G + N ++H G +Y
Sbjct: 9 TDVVIIGGGATGTGILRDCA-LRGLRCILVEKD-DIAAGTTGRNHGLLHSG-----ARYA 61
Query: 65 M----RARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPE 120
+ AR C++ N+I ++ L + L E+D E + G+
Sbjct: 62 VTDSESARECIQENKILKSIARRCVEA---TDGLFITLPEDDLGFQESFIHACSDAGIET 118
Query: 121 MRIVDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKG 180
R+ KE L LEP +N +GA+ VP G + P A V +A +G + T V
Sbjct: 119 QRLTPKEALL-LEPNVNPALIGAVKVP-DGTLDPFRLCAANVLDAKEHGARMFNRTIVTQ 176
Query: 181 IKVKRGE----VRGLETNDGF---IEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYW 233
+ ++ G+ VR G I A +INAAG++ I L+ ++ P KG
Sbjct: 177 L-IREGDTVLGVRCQHLGSGAKFDIFAQQVINAAGIWGQNICEYADLN-IKMFPAKGSLL 234
Query: 234 IFDEGIPGPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDE 293
I D I V+ P I+V + +IG ++ + ++ +N T +D
Sbjct: 235 ILDYRI--NNLVINRCRKPSDADILVPGDTIS--LIGTTSEHIDYDQIDNLHVTEREVDI 290
Query: 294 VWEGAKKLWPNLPPRSKVIRTFAGLRPEPTGGD----------FIIRAEEEVWGFINVAG 343
+ KL P + ++V+R +AG+RP D ++ E+ G
Sbjct: 291 LLAEGAKLAP-IMANTRVLRAYAGVRPLVAVDDDGSGRNISRGIVLLDHEQRDGLKGFTT 349
Query: 344 IRSPGLTSAPAIAYYVAELIERELDVKLIEKKNWNPYRRDFPRIAMLPP----------- 392
I L + +A + +L+ + KL ++ + R P P
Sbjct: 350 ITGGKLMTYRLMAEWATDLVAK----KLGNTQSCQTHLRPLPGSQQAPKALKKTASIAKP 405
Query: 393 ----------EKANELIRRNPLYGKIVCRCNTVSEGEIVEAINRMKFIGVKSPSIDSVKF 442
E+A + + ++C C V+ GEI AI ++ ++ ++
Sbjct: 406 VYESAIYRHGERAANFLADDAKSQAVICECEMVTAGEIEYAIKQLDV-----NNLVDLRR 460
Query: 443 RTKATTGTCQGAFCRPRIIQILA 465
RT+ G CQG C R + +
Sbjct: 461 RTRLGMGPCQGELCSYRAASLFS 483
>pir||S76786 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653787|dbj|BAA18698.1| (D90916) hypothetical
protein [Synechocystis sp.]
Length = 397
Score = 86.6 bits (211), Expect = 6e-16
Identities = 96/370 (25%), Positives = 161/370 (42%), Gaps = 39/370 (10%)
Query: 7 VAIIGAGITGASIARVLSK-YENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPM 65
+ IIG GI G + + + + ++ ++EK D + N+ +IH G P +
Sbjct: 6 ITIIGGGIVGLATGLFIGRRFPQYKLLILEKEADPAHHQTGHNSGVIHSGIYYKPGSF-- 63
Query: 66 RARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVD 125
+A+F GN+ E+ ++ +P+ G ++VA + E+ LE L RG NG+ +++ +
Sbjct: 64 KAQFTKAGNQSMVEFCQEHALPYEVCGKVIVATKPEELPLLENLFNRGQANGL-KVKKLS 122
Query: 126 KEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKVKR 185
E++ + EP + LG + V G + E G + +V GI V +
Sbjct: 123 AEQVKEYEPHV--QCLGGIHVFTSGIVNYKLVCQKYAELIQVQGGEIKFNHRVNGI-VTQ 179
Query: 186 GEVRGLETNDGFIEADIIINAAGLYADEISRMVGLD-YFEIRPRKGEYW-IFDEGIPGPK 243
L TN G + +IN GL +D +++M G++ +I P +GEY+ + E K
Sbjct: 180 ANGHSLITNQGNFFSRFLINCGGLQSDRLAKMAGINPDAKIVPFRGEYYELKPEKRYLVK 239
Query: 244 RVLFPTPTPISK--GIVVTTEISGHLMIGPNA-KDLSPEEKENTATTREGLDEV------ 294
+++P P P G+ T I G + GPNA L E T EV
Sbjct: 240 GLIYPVPNPAFPFLGVHFTRMIDGSIHAGPNAVLSLKREGYRKTDFDWGDFTEVMAYAGF 299
Query: 295 WEGAKKLWPNLPPRSKVIRTFA---------GLRPEPTGGDFIIRAEEEVWGFINVAGIR 345
W+ K W +VIR+F+ L PE T D + N AG+R
Sbjct: 300 WKLVGKHWQE--GLQEVIRSFSKAAFVRSLQELIPEVTADDIL----------PNPAGVR 347
Query: 346 SPGLTSAPAI 355
+ L + A+
Sbjct: 348 AQALKNDGAL 357
>pir||D72721 hypothetical protein APE0309 - Aeropyrum pernix (strain K1)
>gi|5103948|dbj|BAA79264.1| (AP000059) 361aa long
hypothetical protein [Aeropyrum pernix]
Length = 361
Score = 85.8 bits (209), Expect = 1e-15
Identities = 97/378 (25%), Positives = 166/378 (43%), Gaps = 34/378 (8%)
Query: 9 IIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPMRAR 68
++GAG+ G A L+ + V ++E+ V GVS + +IH +++R
Sbjct: 2 VVGAGVVGLFTAIQLA-WRGYSVAVVEELDRVMGGVSSRSANVIHVLQTPFSS---LKSR 57
Query: 69 FCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVDK-- 126
CV+GNR+ ++L V L++A EE L + R + VP+ D
Sbjct: 58 LCVEGNRLHFVLSRELGYSIV-EAPLILAYSEEYKAPLAATVSRLLPRLVPKPSADDAGP 116
Query: 127 ---------EELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETK 177
L LEPGL+ G + V G + ++ + +E V + L +
Sbjct: 117 EIRFEHLRGPRLRDLEPGLSDRVKGGVVVYGYG-VVDYRSLASSLERRVKRLGELFLSSP 175
Query: 178 VKGIKVKRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDE 237
++ ++ + G + L + + A ++NAAGL + ++R+ P KG I
Sbjct: 176 LRRVEERGGYIL-LHAGEATLAAKAVVNAAGLMSHVVARLFADKVPSQTPLKGVMSIHR- 233
Query: 238 GIPGPKRVLFPTPTPI----SKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDE 293
GP+ P + +KG + G L++GPN + P + + + T+E LD
Sbjct: 234 ---GPRLRSIVAPLELRRGETKGGGAIPQSDGSLLLGPN--NAGPTKLGDESYTKEDLDG 288
Query: 294 VWEGAKKLWPNLPPRSKVIRTFAGLRPEPTGGDF-IIRAEEEVWGFINVAGIRSPGLTSA 352
+ + L P + R GLRP G DF + R + V +++ GI SPGLT+A
Sbjct: 289 LRSRFQPLLAE--PVGEPYRVVVGLRPVAPGRDFKVARGKGSV---VHMVGIESPGLTAA 343
Query: 353 PAIAYYVAELIERELDVK 370
P++A A +I+ L K
Sbjct: 344 PSLAAVAASMIDSILRSK 361
>gb|AAF53729.1| (AE003661) CG10639 gene product [Drosophila melanogaster]
Length = 455
Score = 85.0 bits (207), Expect = 2e-15
Identities = 73/278 (26%), Positives = 135/278 (48%), Gaps = 16/278 (5%)
Query: 7 VAIIGAGITGASIAR-VLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPM 65
+ ++G GI GA+ AR ++ ++ +L+V ++EK + S N+ +IH G P +
Sbjct: 45 LVVVGGGIVGAASAREIVLRHPSLKVAVLEKECKLAKHQSGHNSGVIHAGIYYKPGT--L 102
Query: 66 RARFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVD 125
+AR CV+G + + ++ + +IP+ G L+VA +E++ L+ L +RGI N VP++R+++
Sbjct: 103 KARLCVEGMHLAYAYLDEKKIPYKKTGKLIVATDEKEVKLLKDLEKRGIANNVPDLRMIE 162
Query: 126 KEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKV-KGIKVK 184
E+ ++EP + AL P G + ++ G +L+ V K + K
Sbjct: 163 GSEIQEIEPYC--QGVMALHSPHTGIVDWGLVTEHYGQDFKQCGGDIYLDFNVSKFTETK 220
Query: 185 RG-----EVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYF-EIRPRKGEYWIF-DE 237
G + G + + ++ GL +D ++ G I P +GEY + E
Sbjct: 221 EGTDYPVTIHGAKPGQ-TVRTKNVLTCGGLQSDLLAEKTGCPRDPRIVPFRGEYLLLTKE 279
Query: 238 GIPGPKRVLFPTPTPISK--GIVVTTEISGHLMIGPNA 273
K ++P P P G+ T + G + +GPNA
Sbjct: 280 KQHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNA 317
>pir||E82496 probable transcription regulator VCA0147 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657535|gb|AAF96060.1| (AE004355) transcriptional
regulator, putative [Vibrio cholerae]
Length = 403
Score = 80.8 bits (196), Expect = 3e-14
Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 15/296 (5%)
Query: 9 IIGAGITGASIARVLSK-YENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPMRA 67
I+G GI G S L + Y V LIEK + N+ +IH G P ++A
Sbjct: 7 IVGGGIVGVSTGWQLKRRYPEKSVLLIEKEAGFSRHQTGHNSGVIHAGVYYAPGS--LKA 64
Query: 68 RFCVKGNRIWHEWVKQLEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIVDKE 127
FC +G + Q IP G L+VA E++ + + L +R ++N + ++ +D
Sbjct: 65 DFCKRGVERTLAFCAQHNIPVENCGKLLVATNEQELERMHALYDRCLQNQI-DVEKLDAA 123
Query: 128 ELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKVKRGE 187
+L EP N LGA+ V + + E + G + T+V G++
Sbjct: 124 QLKLAEP--NIRGLGAILVKATSIVNYRLVTEKMAEAFMQLGGDVKIGTEVVGLEETPSS 181
Query: 188 VR---GLETNDGFIEADIIINAAGLYADEISRMVGLDY-FEIRPRKGEYW-IFDEGIPGP 242
+ + +A ++ +GL AD +++M+GL F+I P +GEY+ + +
Sbjct: 182 ITLTCQQKNQRVSYQAKFLVTCSGLMADRLTKMLGLPTDFQIIPYRGEYYRLAPKHNQVV 241
Query: 243 KRVLFPTPTPISK--GIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWE 296
+ +++P P P G+ +T I G + +GPNA + ++E L +VWE
Sbjct: 242 RHLIYPIPDPELPFLGVHLTRMIDGCVTVGPNA--VQGFKREGYGKWNVSLRDVWE 295
>gb|AAC48785.1| (AF026954) pyruvate dehydrogenase phosphatase regulatory subunit
precursor; PDPr [Bos taurus]
Length = 878
Score = 80.4 bits (195), Expect = 4e-14
Identities = 86/373 (23%), Positives = 162/373 (43%), Gaps = 28/373 (7%)
Query: 4 RTKVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKY 63
+ +V + G GI G S+A LSK +V L+E+ G A + G
Sbjct: 41 QAQVVVCGGGIMGTSVAYHLSKMGWKDVVLLEQ------GRLAAGSTRFCAGILSTARHL 94
Query: 64 PMRARFCVKGNRIWHEWVKQ--LEIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEM 121
+ + N+++H+ ++ ++ + G++ +A ++ L+++ R G+P
Sbjct: 95 AIEQKMADYSNKLYHQLEQETGIQTGYTRTGSIFLAQTQDRLISLKRINSRLNVIGIP-C 153
Query: 122 RIVDKEELFQLEPGLN-RNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKG 180
I+ +++ +L P LN + +GA+ VP ++ +AL A +GV+ + T +
Sbjct: 154 EIISPKKVAELHPLLNVHDLVGAMHVPEDAVVSSADVALALASAASQSGVQIYDRTSILH 213
Query: 181 IKVKRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDEGIP 240
+ VK+G+V G+ET+ G I+ +N AG +A E+ + + I E++ +
Sbjct: 214 VMVKKGQVAGVETDKGQIQCQYFVNCAGQWAYELG-LCSEEPVSIPLHACEHFYL---LT 269
Query: 241 GPKRVLFPTPTPI---SKGIVVTTEISGHLMIG---PNAKDLSPEEKENTATTREGLDEV 294
P P+ TP + G + G ++ G N K + E K + L E
Sbjct: 270 RPWETPLPSSTPTVVDADGRIYIRNWQGGILSGGFEKNPKPIFTEGKNQLEI--QNLQED 327
Query: 295 WEGAKKLWPNLPPRSKVIRTFAGLR----PEPTGGDF--IIRAEEEVWGFINVAGIRSPG 348
W+ + L +L R + T ++ PE D I+ V G+ + G+ S G
Sbjct: 328 WDHFEPLLSSLLRRMPQLETLEIVKLVNCPETFTPDMRCIMGESPSVRGYFVLVGMNSAG 387
Query: 349 LTSAPAIAYYVAE 361
L+ Y+AE
Sbjct: 388 LSFGGGAGKYLAE 400
>pir||H83370 hydrogen cyanide synthase HcnC PA2195 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|6644364|gb|AAF21030.1|AF208523_3 (AF208523) HcnC
[Pseudomonas aeruginosa]
>gi|9948217|gb|AAG05583.1|AE004646_4 (AE004646) hydrogen
cyanide synthase HcnC [Pseudomonas aeruginosa]
Length = 417
Score = 78.4 bits (190), Expect = 2e-13
Identities = 100/397 (25%), Positives = 169/397 (42%), Gaps = 49/397 (12%)
Query: 7 VAIIGAGITGASIARVLSKYENLEVHLIE-KNPD------------------VGWGV--- 44
+ I G G+ GAS A LS+ NL + +++ K P +G GV
Sbjct: 7 IVIAGGGVIGASCAYQLSRRGNLRIAVVDDKRPGNATRASAGGLWAIGESVGLGCGVIFF 66
Query: 45 --------SKANTAIIHGGYDDDPEKYPMRARFCVKGNRIWHEWVKQLEIPHVWN----- 91
+A A + P ++ N ++ E ++L H +
Sbjct: 67 RMMSSRNRREAQGAAVAVDASTPHILPPAFFDLALQSNALYPELHRELIERHGMDFKFER 126
Query: 92 -GALVVALEEEDFDELEKLLERGIKNGVPEMRIVDKEELFQLEPGLNRNALGALWVPIVG 150
G V ++ED E ++ + I + ++R +D+EEL + EP ++ A GAL
Sbjct: 127 TGLKYVIQDDEDRQYAEHIVAQ-IPHLAEQVRWLDREELRRAEPAVSHAAHGALEFLCDH 185
Query: 151 QIAPIPAVIALVENAVANGVKTHLETKVKGIKVKRGEVRGLET-NDGFIEADIIINAAGL 209
Q++P A +E A NGV+ T V G+ + + G+ T N G + +INAAG
Sbjct: 186 QVSPFRLADAYLEAARQNGVELLPGTNVTGVLRQGRRISGVRTDNAGVLHCRTLINAAGA 245
Query: 210 YADEISRMVGLDYFEIRPRKGEYWIFDEGIPGPKRVLFPTPTPISKGIVVTTEISGHLMI 269
+A E+S M ++P KG+ + E +P R+L T + + + +G ++I
Sbjct: 246 WAAELSEMATGRRIPVKPVKGQI-VLTERMP---RLLNGCLT--TSDCYMAQKDNGEILI 299
Query: 270 GPNAKDLSPEEKENTATTREGLDEVWEGAKKLWPNLPPRSKVIRTFAGLRPEPTGGDFII 329
G +D + NT GL +GA + P L + + RT+AGLRP I+
Sbjct: 300 GSTTED-KGFDVSNTFPEIAGL---VQGAVRCVPEL-QQVNLKRTWAGLRPGSPDELPIL 354
Query: 330 RAEEEVWGFINVAGIRSPGLTSAPAIAYYVAELIERE 366
EV G++N G G+ ++ + L+ E
Sbjct: 355 GPVAEVEGYLNACGHFRTGILTSAITGVLLDRLVHEE 391
>pir||F75144 sarcosine oxidase, chain beta (soxb) PAB0214 - Pyrococcus abyssi
(strain Orsay) >gi|5457747|emb|CAB49237.1| (AJ248284)
sarcosine oxidase, subunit beta (soxB) [Pyrococcus
abyssi]
Length = 379
Score = 75.3 bits (182), Expect = 1e-12
Identities = 95/378 (25%), Positives = 160/378 (42%), Gaps = 17/378 (4%)
Query: 7 VAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPMR 66
+ +IG GI G + A L+K EV + EK G G + + I + D+ M+
Sbjct: 2 IGVIGGGIIGVATAYELAKLGE-EVVVFEKRY-FGSGSTFRCASGIRAQFTDEANIKLMK 59
Query: 67 ARFCVKGNRIWHEWVKQL--EIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIV 124
W E ++L I G L +A EE+ + +K ++ + GVP +++
Sbjct: 60 YSI-----ERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPT-KLI 113
Query: 125 DKEELFQLEPGLN-RNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKV 183
EE ++ P LN L W P G+ +P + A + GVK + T+V I
Sbjct: 114 TPEEAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDG 173
Query: 184 KRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDEGIPGPK 243
R ++T G E D+I+NA + I+ M+G D I P K + + E + +
Sbjct: 174 GREHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQL-VKTEPLERGQ 232
Query: 244 RVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKKLWP 303
P + V+ G ++ G + S + ++ T + + EV + A K+ P
Sbjct: 233 IEPLVCPPAWNDSYVIQDGEDGGVICGTALEYKS--DPDDVTPTYDFVKEVLKWAVKIIP 290
Query: 304 NLPPRSKVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYYVAELI 363
L V+R +AG + + I E V F G G APA+A +AE I
Sbjct: 291 AL-RHVHVVRQWAGHYAKTPDNNPAI--GELVEDFYVAIGFSGHGFMMAPAVAQALAERI 347
Query: 364 ERELDVKLIEKKNWNPYR 381
+ ++ + ++PYR
Sbjct: 348 VKGRTKVPLDWEWYDPYR 365
>gb|AAG09254.1|AF176664_3 (AF176664) iminodiacetate oxidase [EDTA-degrading bacterium BNC1]
Length = 371
Score = 73.7 bits (178), Expect = 4e-12
Identities = 96/370 (25%), Positives = 170/370 (45%), Gaps = 26/370 (7%)
Query: 6 KVAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPM 65
+V IIGAGI GAS A L++ +V +I++N ++ A DDP+ Y +
Sbjct: 2 RVLIIGAGILGASAAYHLARL-GAQVEIIDQNHPGKATLAGAGVVCPWATEADDPDWYLL 60
Query: 66 RARFCVKGNRIWHEWVKQL------EIPHVWNGALVVALEEEDFDELEKLLERGIKNGVP 119
AR G R + +++L E+ + GALV+A + D +E + R IK+ P
Sbjct: 61 YAR----GARYYGTLIEELRGQGETELGYSRVGALVLAEDRARLDTIEGRISRRIKD-AP 115
Query: 120 E---MRIVDKEELFQLEPGLNRNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLET 176
E +R + E +L P L R+ L A+ +P ++ +++ A+++G L
Sbjct: 116 EAGTVRRLGAGEAKRLFPPL-RDDLEAIHIPGGARVDGRLLAASMLRVAISSGAT--LRN 172
Query: 177 KVKGIKVKRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFD 236
+++ G L ++ I AD II AG +A +I ++GL + + P+KG+ I
Sbjct: 173 DYVSLRLNDGRAECLGSDGRPIPADEIIVTAGAWAAQILALLGLRH-PVVPQKGQ--IIH 229
Query: 237 EGIPGPKRVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWE 296
+PG +P P++ ++ + S +++G +D S + TA G EV +
Sbjct: 230 LHLPGVATSGWPVVLPMNSYYMLAFDDS-RVVVGATREDGSGFDYRVTA---RGQLEVLQ 285
Query: 297 GAKKLWPNLPPRSKVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIA 356
+ P L + I T G RP + I+ ++ G G+ + GLT P
Sbjct: 286 AGLGIAPGLADATH-IETRVGFRPAGSAMRPILGRVPQIAGLTIGNGLGASGLTVGPFAG 344
Query: 357 YYVAELIERE 366
+ +A ++ E
Sbjct: 345 HLLAGVVMGE 354
>pir||B71184 probable sarcosine oxidase - Pyrococcus horikoshii
>gi|3258182|dbj|BAA30865.1| (AP000007) 377aa long
hypothetical sarcosine oxidase [Pyrococcus horikoshii]
Length = 377
Score = 73.0 bits (176), Expect = 8e-12
Identities = 97/385 (25%), Positives = 164/385 (42%), Gaps = 33/385 (8%)
Query: 7 VAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPMR 66
+ IIG GI G + A L+K EV + EK G G + + I + D+ M+
Sbjct: 2 IGIIGGGIIGIATAYELAKLGE-EVIVFEKRY-FGSGSTFRCASGIRAQFTDEANIRLMK 59
Query: 67 ARFCVKGNRIWHEWVKQLEIPHVWN--GALVVALEEEDFDELEKLLERGIKNGVPEMRIV 124
W + ++LE ++ G L +A EE+ ++ ++ K GVP +++
Sbjct: 60 YSIDK-----WKKLSEELEYEVMFQQTGYLFLATSEEEVKAFKRNIKLQNKFGVPT-KLI 113
Query: 125 DKEELFQLEPGLNRNA-LGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKV 183
EE ++ P LN +A L W P G+ +P + GV+ + T+V GIK
Sbjct: 114 TPEEAKEIVPPLNADAFLAGAWNPEDGKASPFHTLYGYKRAGEKLGVRFYPYTEVIGIK- 172
Query: 184 KRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDEGIPGPK 243
+ + ++T G D+I+NA + I+ M+G D I+P K + + E I +
Sbjct: 173 -KNDKWIIKTTRGEFRVDVIVNATNAWGRRINSMIGKDIVPIKPFKHQL-VKTEPIERGQ 230
Query: 244 RVLFPTPTPISKGIVVTTEISGHLMIGP------NAKDLSPEEKENTATTREGLDEVWEG 297
P S V+ G ++ G N D++P T + + E +
Sbjct: 231 IEPLVCPPAWSDSYVIQDGEDGGVICGTALEYKGNPDDVTP--------TYDFVKEALKW 282
Query: 298 AKKLWPNLPPRSKVIRTFAGLRPE-PTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIA 356
A K+ P L +IR +AG + P I EE+ F G G APA++
Sbjct: 283 AVKIVPAL-KHVHIIRQWAGYYAKTPDNNPAIGELEED---FYVAIGFSGHGFMMAPAVS 338
Query: 357 YYVAELIERELDVKLIEKKNWNPYR 381
+AE I + ++ + ++PYR
Sbjct: 339 QALAEKIVKGKTKVPLDWEWFDPYR 363
>gb|AAC38596.1| (AF053760) hydrogen cyanide synthase HcnC [Pseudomonas fluorescens]
Length = 417
Score = 72.2 bits (174), Expect = 1e-11
Identities = 95/405 (23%), Positives = 166/405 (40%), Gaps = 65/405 (16%)
Query: 7 VAIIGAGITGASIARVLSKYENLEVHLIE-KNPD------------------VGWGV--- 44
V I G G+ GAS A LSK ++L+V LI+ K P +G GV
Sbjct: 7 VVIAGGGVIGASCAYQLSKRKDLKVALIDAKRPGNASRASAGGLWAIGESVGLGCGVIFF 66
Query: 45 ----------SKANTAIIHGGYDDDPEKYPMRA-RFCVKGNRIWHEWVKQLEIPHVWNGA 93
++ + ++ P P F ++ N ++ ++L H +
Sbjct: 67 RMMSANRKREAQGSAVVVDSS---TPHILPQSFFDFALQSNELYPRLHRELMGLHNMDFK 123
Query: 94 LV-VALEEEDFDELEKLLERGIKNGVP----EMRIVDKEELFQLEPGLNRNALGALWVPI 148
L+ +DE ++L I +P ++R +D+ L EP ++ A GAL
Sbjct: 124 FEQTGLKFVIYDEEDRLYAEHIVGCIPHLSDQVRWLDQAALRASEPNVSHEAQGALEFLC 183
Query: 149 VGQIAPIPAVIALVENAVANGVKTHLETKVKGIKVKRGEVRGLETN-DGFIEADIIINAA 207
Q+ P A E A NGV + T V G+ + V G++T+ G +INAA
Sbjct: 184 DHQVNPFRLTDAYTEGARQNGVDVYFNTNVTGVLHQGNRVSGVKTDVAGLFRCTTLINAA 243
Query: 208 GLYADEISRMVGLDYFEIRPRKGEYWIFDEGIPGPKRVLFPTPTPISKGIVVTTEI---- 263
G +A E+S ++P KG+ + E +P + G + T++
Sbjct: 244 GAWAAELSLQATGIEIPVKPVKGQI-LLTERMP-----------KLLNGCLTTSDCYMAQ 291
Query: 264 --SGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKKLWPNLPPRSKVIRTFAGLRPE 321
+G ++IG +D + + TT ++ + +GA + P L + R +AGLRP
Sbjct: 292 KDNGEILIGSTTED----KGFDVTTTYPEINGLVQGAVRCVPEL-AHVNLKRCWAGLRPG 346
Query: 322 PTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYYVAELIERE 366
I+ + V G++N G G+ ++ + +L+ E
Sbjct: 347 SPDELPILGPMDGVEGYLNACGHFRTGILTSAITGVLLDKLVNEE 391
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.422
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199726020
Number of Sequences: 2977
Number of extensions: 9002032
Number of successful extensions: 27475
Number of sequences better than 1.0e-10: 32
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 27372
Number of HSP's gapped (non-prelim): 42
length of query: 497
length of database: 189,106,746
effective HSP length: 54
effective length of query: 443
effective length of database: 156,788,448
effective search space: 69457282464
effective search space used: 69457282464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)