BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0184 (PAB0184) DE:PROBABLE MONOOXYGENASE
(407 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75218 probable monooxygenase PAB0184 - Pyrococcus abyssi (... 806 0.0
pir||F72254 hypothetical protein TM1433 - Thermotoga maritima (s... 328 5e-89
pir||C75144 sarcosine oxidase, chain alpha (soxa) PAB0212 - Pyro... 190 2e-47
pir||H71183 probable D-nopaline dehydrogenase - Pyrococcus horik... 183 3e-45
gi|11497889 sarcosine oxidase, subunit alpha (soxA) [Archaeoglob... 173 4e-42
emb|CAB88983.1| (AL353864) putative oxidoreductase. [Streptomyce... 142 8e-33
pir||A83461 hypothetical protein PA1488 [imported] - Pseudomonas... 125 7e-28
pir||D71016 probable thioredoxin reductase - Pyrococcus horikosh... 94 2e-18
sp|O18480|DLHD_MANSE DIHYDROLIPOAMIDE DEHYDROGENASE (E3) >gi|226... 94 3e-18
pir||D75116 thioredoxin reductase (trxb) PAB0500 - Pyrococcus ab... 92 8e-18
pir||B82969 sarcosine oxidase alpha subunit PA5418 [imported] - ... 91 2e-17
pir||H72322 thioredoxin reductase - Thermotoga maritima (strain ... 87 4e-16
pir||D83627 alkyl hydroperoxide reductase subunit F PA0140 [impo... 85 1e-15
emb|CAC11966.1| (AL445065) NADH peroxidase related protein [Ther... 83 7e-15
sp|P80880|TRXB_BACSU THIOREDOXIN REDUCTASE (TRXR) (GENERAL STRES... 82 1e-14
pir||T34868 probable glutamate synthase small chain - Streptomyc... 82 1e-14
emb|CAC12113.1| (AL445066) probable thioredoxin reductase [Therm... 80 5e-14
sp|O32823|TRXB_LISMO THIOREDOXIN REDUCTASE (TRXR) >gi|2246749|gb... 79 1e-13
pir||F72705 probable thioredoxin reductase APE1061 - Aeropyrum p... 78 2e-13
dbj|BAB07290.1| (AP001519) thioredoxin reductase (NADPH) [Bacill... 78 2e-13
gi|11499149 thioredoxin reductase (trxB) [Archaeoglobus fulgidus... 78 2e-13
gi|11498012 NADH oxidase (noxA-3) [Archaeoglobus fulgidus] >gi|7... 77 3e-13
emb|CAA11554.1| (AJ223804) 2-oxoglutarate dehydrogenase, E3 subu... 77 4e-13
pir||B75551 glutamate synthase, small subunit - Deinococcus radi... 77 4e-13
gb|AAF34796.1|AF228640_1 (AF228640) lipoamide dehydrogenase prec... 77 4e-13
sp|O06465|AHPF_XANCH ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi... 76 7e-13
pir||B75024 glutamate synthase small chain. PAB1214 - Pyrococcus... 76 9e-13
emb|CAB60740.1| (Y18636) thioredoxine reductase [Staphylococcus ... 76 9e-13
pir||F82936 thioredoxin reductase UU074 [imported] - Ureaplasma ... 75 1e-12
pir||H82668 subunit F of alkyl hydroperoxide reductase XF1531 [i... 75 1e-12
gb|AAG17888.1| (AF295339) dihydrolipoamide dehydrogenase precurs... 75 2e-12
pir||G70655 probable small subunit of NADH-dependent glutamate s... 74 3e-12
sp|O05204|AHPF_STAAU ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi... 74 3e-12
pir||D71076 probable glutamate synthase small chain - Pyrococcus... 74 3e-12
sp|P09832|GLTD_ECOLI GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN (GLU... 74 3e-12
dbj|BAA21091.1| (D86223) glutamate synthase [Pyrococcus sp.] 73 5e-12
gi|11497870 NADH oxidase (noxA-1) [Archaeoglobus fulgidus] >gi|7... 73 5e-12
dbj|BAB05342.1| (AP001512) unknown conserved protein [Bacillus h... 73 5e-12
pir||A49911 NADH oxidase (hydrogen peroxide-forming) (EC 1.6.-.-... 73 6e-12
sp|O82864|AHPF_PSEPU ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi... 73 6e-12
pir||H75052 NADH oxidase (noxa-1) PAB0936 - Pyrococcus abyssi (s... 73 6e-12
pir||G64491 thioredoxin reductase (NADPH) (EC 1.6.4.5) - Methano... 72 1e-11
gi|4557525 dihydrolipoamide dehydrogenase precursor; E3 componen... 72 1e-11
gb|AAB01381.1| (L13761) dihydrolipoamide dehydrogenase [Homo sap... 72 1e-11
emb|CAB57297.1| (AJ243598) NADH oxidase [Sulfolobus solfataricus] 72 1e-11
gb|AAF21029.1|AF208523_2 (AF208523) HcnB [Pseudomonas aeruginosa] 72 1e-11
gb|AAF34795.1|AF228639_1 (AF228639) lipoamide dehydrogenase prec... 72 1e-11
gb|AAF79529.1|AC023673_17 (AC023673) F21D18.28 [Arabidopsis thal... 72 1e-11
pir||G83370 hydrogen cyanide synthase HcnB PA2194 [imported] - P... 72 1e-11
gb|AAG21579.1|AC051631_2 (AC051631) lipoamide dehydrogenase, put... 72 1e-11
sp|P09623|DLDH_PIG DIHYDROLIPOAMIDE DEHYDROGENASE, MITOCHONDRIAL... 71 2e-11
gb|AAA35764.1| (J03620) dihydrolipoamide dehydrogenase precursor... 71 2e-11
pir||E69194 thioredoxin reductase (NADPH) (EC 1.6.4.5) - Methano... 71 2e-11
pir||H71171 probable NADH oxidase - Pyrococcus horikoshii >gi|32... 71 2e-11
sp|P50970|DLDH_ZYMMO DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 71 2e-11
gi|11498007 NADH oxidase (noxA-2) [Archaeoglobus fulgidus] >gi|7... 71 2e-11
emb|CAA11546.1| (AJ223781) thioredoxin reductase [Staphylococcus... 71 2e-11
pir||D72382 hypothetical protein TM0395 - Thermotoga maritima (s... 71 2e-11
gb|AAD52148.1|AF129406_2 (AF129406) alkyl hydroperoxide reductas... 71 2e-11
gb|AAK42391.1| Thioredoxin reductase (trxB-1) [Sulfolobus solfat... 71 3e-11
pir||D71200 probable glutamate synthase small chain - Pyrococcus... 71 3e-11
sp|P75531|TRXB_MYCPN THIOREDOXIN REDUCTASE (TRXR) >gi|2146661|pi... 70 5e-11
pir||D35156 thioredoxin reductase (NADPH) (EC 1.6.4.5) - Eubacte... 70 5e-11
gb|AAK42805.1| Mercuric reductase (Hg(II) reductase) (merA) [Sul... 70 5e-11
gb|AAA19188.1| (U10552) acetoin dehydrogenase [Klebsiella pneumo... 70 5e-11
pir||JC4793 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Klebsi... 70 5e-11
sp|P50971|TRXB_EUBAC THIOREDOXIN REDUCTASE (TRXR) >gi|1353197|gb... 70 5e-11
sp|O66790|TRXB_AQUAE THIOREDOXIN REDUCTASE (TRXR) >gi|7427756|pi... 69 7e-11
pir||T06332 ferric leghemoglobin reductase isoenzyme 2 precursor... 69 9e-11
>pir||C75218 probable monooxygenase PAB0184 - Pyrococcus abyssi (strain Orsay)
>gi|5457703|emb|CAB49194.1| (AJ248283) PROBABLE
MONOOXYGENASE [Pyrococcus abyssi]
Length = 407
Score = 806 bits (2059), Expect = 0.0
Identities = 407/407 (100%), Positives = 407/407 (100%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGP 60
MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGP
Sbjct: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGP 60
Query: 61 EFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERH 120
EFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERH
Sbjct: 61 EFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERH 120
Query: 121 AFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVKA 180
AFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVKA
Sbjct: 121 AFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVKA 180
Query: 181 VIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEF 240
VIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEF
Sbjct: 181 VIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEF 240
Query: 241 WVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLV 300
WVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLV
Sbjct: 241 WVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLV 300
Query: 301 DYVVEQGELAAEGAKEFIDNDGIRSRKWTRLIKGENVRFVVPHYLSGDRDVWIYLRVSRP 360
DYVVEQGELAAEGAKEFIDNDGIRSRKWTRLIKGENVRFVVPHYLSGDRDVWIYLRVSRP
Sbjct: 301 DYVVEQGELAAEGAKEFIDNDGIRSRKWTRLIKGENVRFVVPHYLSGDRDVWIYLRVSRP 360
Query: 361 MEDVRLEMPEIGKRMRLPIVKPSEMIRIKLRGKDVKGVDKITVRVVK 407
MEDVRLEMPEIGKRMRLPIVKPSEMIRIKLRGKDVKGVDKITVRVVK
Sbjct: 361 MEDVRLEMPEIGKRMRLPIVKPSEMIRIKLRGKDVKGVDKITVRVVK 407
>pir||F72254 hypothetical protein TM1433 - Thermotoga maritima (strain MSB8)
>gi|4981998|gb|AAD36503.1|AE001795_6 (AE001795)
oxidoreductase, putative [Thermotoga maritima]
Length = 403
Score = 328 bits (833), Expect = 5e-89
Identities = 184/406 (45%), Positives = 263/406 (64%), Gaps = 13/406 (3%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEF 62
DV VIG G AGMAAA+KA+E G V+L++ ++ GGIL QCIH GFG+HYF++ELTGPE+
Sbjct: 4 DVMVIGAGAAGMAAALKAKEEGAEVLLVERDERTGGILNQCIHNGFGLHYFRQELTGPEY 63
Query: 63 AYKLMNRLRDVEVR--TSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERH 120
A + ++ + +R T+A V + ++R+ +++ GIEE+ ++YA GARER
Sbjct: 64 AERFQEKMEKMGIRALTNAYVKRVE-----DRRVILVTEQGIEEVEVGALVYATGARERP 118
Query: 121 AFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVKA 180
+ I GDR +GIFTAG AQ L++I +PG+ LI+GSGD+GLIMARR LEG V
Sbjct: 119 FGSLMIPGDRPSGIFTAGVAQRLINIENRLPGKRALILGSGDIGLIMARRLTLEGMEVVG 178
Query: 181 VIELMPYPGGLARNVM-ILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTE 239
V+E +PY GGL RNV+ L D+NIPLYLS VVE+RG+ R++ V + KVDE R IP TE
Sbjct: 179 VVERLPYAGGLLRNVIQCLEDYNIPLYLSSTVVEVRGRERLEEVVVAKVDEQFRPIPRTE 238
Query: 240 FWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDL 299
VDT+++S GLIP V+L+ + V +P++ G V++ +T+ IF AGN VI DL
Sbjct: 239 RVFKVDTLVLSVGLIPQVELIENL-VVKNPTSRGVGVSNIGQTSRDWIFSAGNCTVIFDL 297
Query: 300 VDYVVEQGELAAEGAKEFIDNDGIRSRKWTRLIKGENVRFVVPHYLSGDRDVWIYLRVSR 359
VDYV +GE A A +F+ + R + R G+NV V P + + + +YLRV +
Sbjct: 298 VDYVSYEGETAGRYAAKFVKGEIPREKIPVR--PGKNVMVVHPIWYTPAEPLTLYLRVKK 355
Query: 360 PMEDVRLEMPEIGKRMRLPIVKPSEMIRIKLRGKDVKGVDKITVRV 405
PME RL + + + PSEM+R+K+ +D++G+D+I V V
Sbjct: 356 PMEKGRLVVGRFAREFE--DLVPSEMLRVKISDRDLEGLDEIVVSV 399
>pir||C75144 sarcosine oxidase, chain alpha (soxa) PAB0212 - Pyrococcus abyssi
(strain Orsay) >gi|5457744|emb|CAB49234.1| (AJ248284)
sarcosine oxidase, subunit alpha (soxA) [Pyrococcus
abyssi]
Length = 481
Score = 190 bits (479), Expect = 2e-47
Identities = 119/318 (37%), Positives = 177/318 (55%), Gaps = 10/318 (3%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEF 62
D+ VIGGGPAGM AAI A + G V+LIDEN LGG L + H FG + G +
Sbjct: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKI 180
Query: 63 AYKLMNRL--RDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERH 120
A L N + R++EV V I + + + + S + E+ + II A GA E+
Sbjct: 181 AEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEK- 239
Query: 121 AFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVKA 180
+ + + GI+ AG QTLM+ YG+ PG + LIVG+G+VGLI+A + G +V+A
Sbjct: 240 --SVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEA 297
Query: 181 VIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEF 240
++E MP GG + + +P+ H ++ GK +V+R + ++DEN R IPGTE
Sbjct: 298 IVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEK 357
Query: 241 WVDVDTVIISAGLIPNVKLLTKVGVAID--PSTGGPIV--NDRLETTVPGIFVAGNALVI 296
DVD + I+ GL P+++LL + G I GG + ++ LETTV GIFVAG+ I
Sbjct: 358 IFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGI 417
Query: 297 NDLVDYVVEQGELAAEGA 314
+ ++E G++A A
Sbjct: 418 EEATTAMLE-GKIAGIAA 434
>pir||H71183 probable D-nopaline dehydrogenase - Pyrococcus horikoshii
>gi|3258180|dbj|BAA30863.1| (AP000007) 482aa long
hypothetical D-nopaline dehydrogenase [Pyrococcus
horikoshii]
Length = 482
Score = 183 bits (460), Expect = 3e-45
Identities = 122/338 (36%), Positives = 185/338 (54%), Gaps = 14/338 (4%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEF 62
D+ V+GGGPAGM AAI A + G VILIDE+ LGG L + H FG + G +
Sbjct: 122 DIIVVGGGPAGMMAAISASDTGAKVILIDESPMLGGQLVKQTHKFFGKRDQFAGIRGIKI 181
Query: 63 AYKLMNRLRDVE-VRTSARVVEIINYSDIEKRLK--VISPSGIEEIRAKTIIYAAGARER 119
A L + E ++ R + + D E++L V + + E + K +I A GA E+
Sbjct: 182 AEILRREIEKRENIKAYLRTSAVGIFQDGEEKLVIGVRKENELIEFKGKAVIVATGAMEK 241
Query: 120 HAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVK 179
I + + GI+ AG QTLM+ YGI PG + LIVG+G+VGLI+A + +V+
Sbjct: 242 ---TIPFENNDLPGIYGAGAIQTLMNTYGIKPGEKALIVGAGNVGLILAYQLLQANVQVQ 298
Query: 180 AVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTE 239
A++E MP GG + + +P+ H +++ G+ +V+R + ++DEN IPGTE
Sbjct: 299 AIVEAMPKIGGYFVHAAKVRRLGVPILTRHTILKAEGEEKVERAIVAEIDENWNPIPGTE 358
Query: 240 FWVDVDTVIISAGLIPNVKLLTKVGVAID--PSTGGPI-VNDR-LETTVPGIFVAGNALV 295
DVD + I+ GL P+++LL + G I GG + V DR +ETTV GIFVAG+
Sbjct: 359 KIFDVDLIAIAVGLRPSIELLQQAGCQIKYVRELGGHVPVRDRWMETTVKGIFVAGDTAG 418
Query: 296 INDLVDYVVEQGELAAEGAKEFIDNDGIRSRKWTRLIK 333
I + ++E G++A A + GI +W + I+
Sbjct: 419 IEEATTAMLE-GKIAGLAAALRL---GIAGEEWVKEIE 452
>gi|11497889 sarcosine oxidase, subunit alpha (soxA) [Archaeoglobus fulgidus]
>gi|7482953|pir||A69284 coenzyme F420--quinone
oxidoreductase (EC 1.6.5.-) 56K chain - Archaeoglobus
fulgidus >gi|2650363|gb|AAB90959.1| (AE001086) sarcosine
oxidase, subunit alpha (soxA) [Archaeoglobus fulgidus]
Length = 534
Score = 173 bits (433), Expect = 4e-42
Identities = 115/332 (34%), Positives = 174/332 (51%), Gaps = 11/332 (3%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEF 62
DV VIGGGP GM+AAI A + G V+L+DEN +LGG L + H FG + G +
Sbjct: 171 DVLVIGGGPGGMSAAINAGKYGAKVLLVDENPFLGGQLVKQTHRFFGSAKERAGTRGIKI 230
Query: 63 AYKL---MNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARER 119
A L +N + +VEVR RV I N + + I+AK I+ A GA ER
Sbjct: 231 AGILEEELNSIENVEVRRETRVFGIYNGEAGAYQRLNDDEGKLLRIKAKKIVVATGAYER 290
Query: 120 HAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVK 179
+ + G++ AG QTLM++YGI PG LIVGSG+VGLI+ + G V
Sbjct: 291 TLI---FENNDLPGVYGAGGVQTLMNVYGIKPGNMGLIVGSGNVGLILTYQLMQAGVNVA 347
Query: 180 AVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTE 239
A++E MP GG + + +P+Y+ H +++ G+ V+ I ++D+ + IPGTE
Sbjct: 348 AIVEAMPRIGGYFVHAAKVRRLGVPIYVRHTILKAIGRKSVEGAVIAQLDDRWQPIPGTE 407
Query: 240 FWVDVDTVIISAGLIPNVKLLTKVGVAID--PSTGG--PIVNDRLETTVPGIFVAGNALV 295
+ D + ++ GL P +LL + G + P GG P+ ET+V G++VAG+
Sbjct: 408 KEIKCDFICVAVGLSPTHELLYQAGCEMKFVPELGGIVPLRTRFNETSVKGLYVAGDVAG 467
Query: 296 INDLVDYVVEQGELAAEGAKEFIDNDGIRSRK 327
I + ++E G +A A + G ++K
Sbjct: 468 IEEATAAIME-GRIAGIHAAVTLGYGGEEAKK 498
>emb|CAB88983.1| (AL353864) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 416
Score = 142 bits (354), Expect = 8e-33
Identities = 111/401 (27%), Positives = 175/401 (42%), Gaps = 25/401 (6%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEF 62
DV V+G GPAG+ AA + G V+L++ GG+ C H GFG LTGP
Sbjct: 7 DVLVVGAGPAGLTAAARLARTGARVVLLEREQSPGGVPRHCAHRGFGDR--PHALTGPAH 64
Query: 63 AYKLMNRLRDVEVRTSARVVEIINYSDIE--KRLKVISPSGIEEIRAKTIIYAAGARERH 120
A L D R A + + D + L + P G E + A+ ++ A GARER
Sbjct: 65 A----RLLADAAARAGADLRTGVTALDWAGPRALTTVGPRGAETLAARAVVLATGARERP 120
Query: 121 AFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVKA 180
+ G R AG++T GE Q + +YG G +IVG+ V A GA V A
Sbjct: 121 RAARLVPGTRPAGVYTTGELQQAVHLYGQHIGTRAVIVGAEGVSHAAADTVRAAGADVLA 180
Query: 181 VI-ELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTE 239
++ EL P A + P+ KV E+ G+GR+ V++ R G
Sbjct: 181 LVTELPQAPAAPAWALAARLRHRTPVLTGTKVTELLGRGRLSGVRV-------RHRDGRS 233
Query: 240 FWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDL 299
+ DTV+ + +P+ +L + + +DP T GP V+ L T+ PG+F G+ L +
Sbjct: 234 TVLACDTVVFTGDFVPDHELARRGALTLDPGTRGPAVDGALRTSRPGVFAVGSVLHAVES 293
Query: 300 VDYVVEQGELAAEGAKEFI-DNDGIRSRKW---TRLIKGENVRFVVPHYLSGDRDVWIYL 355
+G AA + ++ D W L+ G + + P+ ++ D + L
Sbjct: 294 AATAAREGAHAATAVRRWLQDGTDPGDPYWPGGVPLLAGPPLLRIAPNRVTPDDRLPYLL 353
Query: 356 RVSRPMEDVRLEMPEIGK-----RMRLPIVKPSEMIRIKLR 391
R + P+ L + + G+ R L P +++ R
Sbjct: 354 RTAVPLSHPALYVTQDGRPLHRERFHLGTAVPHRPLKLTAR 394
>pir||A83461 hypothetical protein PA1488 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947442|gb|AAG04877.1|AE004577_12
(AE004577) hypothetical protein [Pseudomonas aeruginosa]
Length = 412
Score = 125 bits (312), Expect = 7e-28
Identities = 86/295 (29%), Positives = 140/295 (47%), Gaps = 14/295 (4%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDEND-YLGGILPQCIHPGFGIHYFKEELTGPE 61
DVA++G GPAG+AAAI+ R G++ + + E D GGI C HP FG+ LTGP
Sbjct: 8 DVAIVGSGPAGLAAAIELRRQGVARVCVLERDGEAGGIPRHCAHPPFGLREHGRLLTGPA 67
Query: 62 FAYKLMNRLR--DVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARER 119
+A + + + V++R VV + L++ +P G +RA ++ A GARE
Sbjct: 68 YAQRNVEQAERAGVDIRLRHSVVALAAAG----LLQLATPEGPRSLRATRVLLATGARET 123
Query: 120 HAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVK 179
+ GDR G+ G Q + + G+ P LIVG+ V L G R
Sbjct: 124 PRSARLLGGDRPLGVINTGALQAYLYLQGLKPFERPLIVGTELVSLSAVMSCRRAGIRPV 183
Query: 180 AVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTE 239
A++E + +P++ S +++EI G+GRV+ ++ D + I
Sbjct: 184 AMLERNARATARWPLSLFPRLCGVPMHFSSELLEIEGRGRVEAARVRLGDGRVERIA--- 240
Query: 240 FWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNAL 294
D +++S +P L+ + +DP++GGP ++ + P F AGN L
Sbjct: 241 ----CDGILLSGRFVPESSLVRLSHLELDPASGGPRIDQFGRCSDPAYFAAGNLL 291
>pir||D71016 probable thioredoxin reductase - Pyrococcus horikoshii
>gi|3257849|dbj|BAA30532.1| (AP000006) 336aa long
hypothetical thioredoxin reductase [Pyrococcus
horikoshii]
Length = 336
Score = 94.4 bits (231), Expect = 2e-18
Identities = 100/337 (29%), Positives = 153/337 (44%), Gaps = 47/337 (13%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGG--ILPQCI--HPGFGIHYFKEE 56
++DV +IG GPAG AAI A GL I+I ++ LGG + I +PGF E
Sbjct: 23 VWDVIIIGAGPAGYTAAIYAARFGLDTIIITKD--LGGNMAITDLIENYPGF-----PEG 75
Query: 57 LTGPEFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLK------VISPSGIEEIRAKTI 110
++G E + K+ ++++ V + E+I E V+ + +E +AKTI
Sbjct: 76 ISGSELSKKMYDQVKKYGVEVI--IDEVIRIDPAECAYYEGPCNFVVKTANGKEYKAKTI 133
Query: 111 IYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYG-IMPGREILIVGSGDVGLIMAR 169
I A GA R ++ + G++ FT G + G+E+++VG G+ L A
Sbjct: 134 IIAVGAEPR---KLNVPGEKE---FTGRGVSYCATCDGPLFVGKEVIVVGGGNTALQEAL 187
Query: 170 RFALEGARVKAVIELMPYPGGLARNVMILND----FNIPLYLSHKVVEIRGKGRVQRV-- 223
G +V V + R IL D IP L+ V EI+G +V+ V
Sbjct: 188 YLHSIGVKVTLVHRRDKF-----RADKILQDRFKQAGIPAILNTVVTEIKGTNKVESVVL 242
Query: 224 KIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETT 283
K VK E + + VD V I G P + +G+ + G V+ + T
Sbjct: 243 KNVKTGETVEK--------KVDGVFIFIGYEPKTDFVKHLGITDE--YGYIPVDMYMRTK 292
Query: 284 VPGIFVAGNALVINDLVDYVVEQGELAAEGAKEFIDN 320
VPGIF AG+ + + V QG +AA AKEFI++
Sbjct: 293 VPGIFAAGDITNVFKQIAVAVGQGAIAANSAKEFIES 329
>sp|O18480|DLHD_MANSE DIHYDROLIPOAMIDE DEHYDROGENASE (E3) >gi|2267131|gb|AAB88282.1|
(AF008586) dihydrolipoamide dehydrogenase [Manduca
sexta]
Length = 497
Score = 94.0 bits (230), Expect = 3e-18
Identities = 96/351 (27%), Positives = 164/351 (46%), Gaps = 54/351 (15%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPG--------------- 47
D+ VIG GP G AAIKA +LG+ V+ +++ LGG C++ G
Sbjct: 32 DLVVIGAGPGGYVAAIKAAQLGMKVVSVEKEPSLGG---TCLNVGCIPSKALLHNTHLYH 88
Query: 48 FGIHYFKE---ELTGPEFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLK----VISPS 100
H FK E +F +K M + V+ + ++ + K ++ +++P+
Sbjct: 89 MAKHDFKHRGIETGEVKFNFKAMMDYKVNAVKALTGGIAMLFQKNKVKLVRGAGTIVAPN 148
Query: 101 --------GIEEIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPG 152
G+E + K I+ A G+ E F G+T D I T+ A +L +
Sbjct: 149 KVEVKGEKGVETVNTKNILIATGS-EVTPFP-GVTFDE-KQIITSTGALSLESV-----P 200
Query: 153 REILIVGSGDVGLIMARRFALEGARVKAVIELMPYPGGLARNVMILNDFNI------PLY 206
+++L++G+G +GL + + GA V A IE + GG+ ++ + D+ I
Sbjct: 201 KKMLVIGAGVIGLELGSVYQRLGADVTA-IEFLGSIGGIGIDMEVSKDYRILAKQGMKFK 259
Query: 207 LSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVK--LLTKVG 264
L KV+ ++ +G +V+ V ++ G + +D D V+IS G P K L KVG
Sbjct: 260 LETKVLGVKKEGSTVKVEDVSIE---GAKGGNKETMDCDVVLISIGRRPYTKDLGLDKVG 316
Query: 265 VAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEGAK 315
+A+D G VN++ +TTVPGI+ G+ + L ++G + EG K
Sbjct: 317 IALD-DRGRVPVNNKFQTTVPGIYAIGDVIHGPMLAHKAEDEGIVCVEGIK 366
>pir||D75116 thioredoxin reductase (trxb) PAB0500 - Pyrococcus abyssi (strain
Orsay) >gi|5458156|emb|CAB49645.1| (AJ248285)
thioredoxin reductase (trxB) [Pyrococcus abyssi]
Length = 345
Score = 92.4 bits (226), Expect = 8e-18
Identities = 100/334 (29%), Positives = 151/334 (44%), Gaps = 41/334 (12%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGG--ILPQCI--HPGFGIHYFKEE 56
++DV +IG GPAG AAI A GL I+I ++ LGG + I +PGF E
Sbjct: 32 VWDVIIIGAGPAGYTAAIYAARFGLDTIIITKD--LGGNMAITDLIENYPGF-----PEG 84
Query: 57 LTGPEFAYKLMNRLRDVEVRTSARVVEIIN-----YSDIEKRLKVISPSGIEEIRAKTII 111
++G E A ++ ++ V V I+ Y + + +V + +G +E + KTII
Sbjct: 85 ISGSELAKRMYEHVKKYGVDVIFDEVVRIDPAECAYYEGPCQFEVKTANG-KEYKGKTII 143
Query: 112 YAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYG-IMPGREILIVGSGDVGLIMARR 170
A GA R ++ + G++ FT G + G+E+++VG G+ L A
Sbjct: 144 IAVGAEPR---KLHVPGEKE---FTGRGVSYCATCDGPLFVGKEVIVVGGGNTALQEALY 197
Query: 171 FALEGARVKAVIELMPYPGGLARNVMILND----FNIPLYLSHKVVEIRGKGRVQRVKIV 226
G +V V + R IL D IP L+ V EIRG +V+ V +
Sbjct: 198 LHSIGVKVTLVHRRDKF-----RADKILQDRLKQAGIPTILNTVVTEIRGTNKVESVVLK 252
Query: 227 KVDENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPG 286
V G F VD V I G P + +G+ + G V+ + T VPG
Sbjct: 253 NVKT------GETFEKKVDGVFIFIGYEPKTDFVKHLGITDE--YGYIKVDMYMRTKVPG 304
Query: 287 IFVAGNALVINDLVDYVVEQGELAAEGAKEFIDN 320
IF AG+ + + V QG +AA AKEFI++
Sbjct: 305 IFAAGDITNVFKQIAVAVGQGAIAANSAKEFIES 338
>pir||B82969 sarcosine oxidase alpha subunit PA5418 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951745|gb|AAG08803.1|AE004954_5 (AE004954)
sarcosine oxidase alpha subunit [Pseudomonas aeruginosa]
Length = 1005
Score = 91.3 bits (223), Expect = 2e-17
Identities = 81/301 (26%), Positives = 130/301 (42%), Gaps = 40/301 (13%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEF 62
DV V+G GPAG+AAA+ A G VIL DE + GG L +E L G
Sbjct: 172 DVLVVGAGPAGLAAALAAARSGARVILADEQEEFGGSLLDT----------RETLDGKPA 221
Query: 63 AYKLMNRLRDVE--------VRTSARVVEIINYSDIEKR----LKVISPSG-----IEEI 105
A + + + +++ R++ N+ I +R L ++P G + +
Sbjct: 222 AEWVADAVAELQGLPEVILLPRSTVNGYHDHNFLTIHERRTDHLGEVAPLGQVRQRVHRV 281
Query: 106 RAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGL 165
RAK ++ AAGA ER + + + G AG T + YG+ PG+++++ + D
Sbjct: 282 RAKRVVLAAGAHER---PLVYGNNDLPGNMLAGAVSTYVRRYGVAPGKKLVLATNNDYAY 338
Query: 166 IMARRFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKI 225
+A + G +V A+ + P G V + + V+E RG RV K+
Sbjct: 339 RVALDWQEAGLQVVAIADARANPRG--EWVEEARQRGMRVITGSSVIEARGGKRVSGAKV 396
Query: 226 VKVDENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVP 285
++D G E W+D D + S G P V L + +G G P + + VP
Sbjct: 397 ARIDLQAMRASGGE-WLDCDLIASSGGYSPVVHLASHLG-------GKPEWREEILAFVP 448
Query: 286 G 286
G
Sbjct: 449 G 449
>pir||H72322 thioredoxin reductase - Thermotoga maritima (strain MSB8)
>gi|4981404|gb|AAD35951.1|AE001753_7 (AE001753)
thioredoxin reductase [Thermotoga maritima]
Length = 317
Score = 87.0 bits (212), Expect = 4e-16
Identities = 88/318 (27%), Positives = 146/318 (45%), Gaps = 28/318 (8%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILID---ENDYLGGILPQCIHPGFGIHYFKEELT 58
YD+ V+GGGPAG+ +AI AR GLSV++++ E Y+ +PGF ++
Sbjct: 18 YDIVVVGGGPAGLTSAIYARRAGLSVLVVEKAIEGGYVNLTHLVENYPGF------PAIS 71
Query: 59 GPEFAYKLMNRLRDVEVRT-SARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGAR 117
G E A K +A VV++ +++ KV+ + I A +I A GA
Sbjct: 72 GEELASKFKEHAEKFGADIYNAEVVKL----EVQGDKKVVELDDGKRIEAPVVIVATGAN 127
Query: 118 ERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGAR 177
+ ++ + G++ F G + + G+++++VG GD + + +
Sbjct: 128 PK---KLNVPGEK--EFFGKGVSYCATCDGYLFAGKDVIVVGGGDSACDESIFLSNIVNK 182
Query: 178 VKAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPG 237
+ + L +LN+ I + + V EIRGK +V+ V I EN++ G
Sbjct: 183 ITMIQLLETLTAAKVLQERVLNNPKIEVIYNSTVREIRGKDKVEEVVI----ENVK--TG 236
Query: 238 TEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVIN 297
+ D V I GL PN KLL + V +DP G I ++ +ET+V GI+ G+ N
Sbjct: 237 ETKVLKADGVFIFIGLDPNSKLLEGL-VELDP-YGYVITDENMETSVKGIYAVGDVRKKN 294
Query: 298 -DLVDYVVEQGELAAEGA 314
+ V G +A E A
Sbjct: 295 LRQIVTAVADGAIAVEHA 312
>pir||D83627 alkyl hydroperoxide reductase subunit F PA0140 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9945970|gb|AAG03530.1|AE004452_2 (AE004452) alkyl
hydroperoxide reductase subunit F [Pseudomonas
aeruginosa]
Length = 521
Score = 85.0 bits (207), Expect = 1e-15
Identities = 81/304 (26%), Positives = 144/304 (46%), Gaps = 33/304 (10%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
+DV V+GGGPAG AAAI A G+ + E + G +L F +E GP+
Sbjct: 212 FDVLVVGGGPAGAAAAIYAARKGIRTGVAAER-FGGQVLDTMAIENF---ISVQETEGPK 267
Query: 62 FAYKLMNRLR--DVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARER 119
A L +R +V++ R +++ + + +V SG ++AKT+I A GAR R
Sbjct: 268 LARALEEHVRHYEVDIMNLQRASKLVPAKNAGELHEVRFESG-GSLKAKTLILATGARWR 326
Query: 120 HAFEIGITGD---RVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGA 176
E+G+ G+ + G+ + G+ + ++G G+ G+ A++ A
Sbjct: 327 ---EMGVPGEQEYKAKGVCFCPHCDG-----PLFKGKRVAVIGGGNSGV----EAAIDLA 374
Query: 177 RVKAVIELMPYPGGLARNVMILNDF----NIPLYLSHKVVEIRGKGRVQRVKIVKVDENL 232
+ A + L+ + L + ++ N+ + S E++G G+ + +V D N
Sbjct: 375 GIVAHVTLLEFDSKLRADAVLQRKLYSLPNVEVITSALTSEVKGDGQ-KVTGLVYKDRNS 433
Query: 233 REIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGN 292
E ++++ + + GL+PN + L K V + P G IV+ R ET++PGIF AG+
Sbjct: 434 EEFKS----IELEGIFVQIGLLPNTEWL-KGSVELSP-RGEIIVDARGETSLPGIFAAGD 487
Query: 293 ALVI 296
+
Sbjct: 488 VTTV 491
>emb|CAC11966.1| (AL445065) NADH peroxidase related protein [Thermoplasma
acidophilum]
Length = 435
Score = 82.7 bits (201), Expect = 7e-15
Identities = 81/309 (26%), Positives = 147/309 (47%), Gaps = 42/309 (13%)
Query: 3 DVAVIGGGPAGMAAAIKARELG--LSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGP 60
D+ VIGGG AGMAAA KA+ + +V +I+ ++ +C GI YF + + G
Sbjct: 2 DIVVIGGGAAGMAAASKAKRVNKDANVTVIESGSFVS--YAEC-----GIPYFLQGIVGK 54
Query: 61 EFAYKLMNRLRDVEVRTSARVVEIINYSDIEK----RLKVISPSGIEEIRAKTIIYAAGA 116
A L++ +E T R +++I ++K L ++ +G ++ +I A G+
Sbjct: 55 --AEDLLH--YPLEEFTEKRGIKVITGRVVKKIDTASLSLVLDNG-SAVKFDRLIIATGS 109
Query: 117 RERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPG-REILIVGSGDVGLIMARRFALEG 175
R R I +G+F ++ + + + G R I I+G+G +G+ +A G
Sbjct: 110 RPR------IPDGIASGVFGLRSLESAIRLKEAIDGSRTITIIGAGVLGVELASTLTEAG 163
Query: 176 ARVKAVIELMPYPGGLARNV-MILNDF---NIPLYLSHKVVEIRGKGRVQRVKIVKVDEN 231
RVK + + L ++ ILND+ + + S VEI+ KG VD++
Sbjct: 164 KRVKVISKYDRVMPQLDPDMGKILNDYFSSKVEVEFSSTPVEIK-KGEDGFAVKTTVDDH 222
Query: 232 LREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAG 291
+ D VI + G++PN + G+ +D G I ++ +ET++PGI+ AG
Sbjct: 223 VS-----------DVVIAAVGIVPNSNIAVDAGIKVD-QRGAIITDEHMETSIPGIYAAG 270
Query: 292 NALVINDLV 300
+ + +++
Sbjct: 271 DVATVKNII 279
>sp|P80880|TRXB_BACSU THIOREDOXIN REDUCTASE (TRXR) (GENERAL STRESS PROTEIN 35) (GSP35)
>gi|7427754|pir||A69727 thioredoxin reductase (NADPH)
(EC 1.6.4.5) - Bacillus subtilis
>gi|1945648|emb|CAB08055.1| (Z94043) hypothetical
protein [Bacillus subtilis] >gi|2635992|emb|CAB15484.1|
(Z99121) thioredoxin reductase [Bacillus subtilis]
Length = 316
Score = 81.9 bits (199), Expect = 1e-14
Identities = 89/333 (26%), Positives = 151/333 (44%), Gaps = 46/333 (13%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQC----IHPGFGIHYFKEE 56
+YDV +IG GPAGM AA+ LS ++I E GG + +PGF E
Sbjct: 6 IYDVIIIGAGPAGMTAAVYTSRANLSTLMI-ERGIPGGQMANTEDVENYPGF------ES 58
Query: 57 LTGPEFAYKLMNRLRDVEVRTS-ARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAG 115
+ GPE + K+ + + + E+I+ K KV+ +G +E +A+ +I AAG
Sbjct: 59 ILGPELSNKMFEHAKKFGAEYAYGDIKEVID----GKEYKVVK-AGSKEYKARAVIIAAG 113
Query: 116 ARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGL---IMARRFA 172
A + +IG+ G++ G G + + G+E+++VG GD + + RFA
Sbjct: 114 AEYK---KIGVPGEKELG--GRGVSYCAVCDGAFFKGKELVVVGGGDSAVEEGVYLTRFA 168
Query: 173 LEGARVKAVIELMPYPGGLARNVMILNDFN---IPLYLSHKVVEIRGK-GRVQRVKIVKV 228
+ V +L A++++ F+ + + V EI + G+V V +V
Sbjct: 169 SKVTIVHRRDKLR------AQSILQARAFDNEKVDFLWNKTVKEIHEENGKVGNVTLVDT 222
Query: 229 DENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIF 288
+ G E D V I G++P K +G+ + G NDR+ET V GIF
Sbjct: 223 ------VTGEESEFKTDGVFIYIGMLPLSKPFENLGITNE--EGYIETNDRMETKVEGIF 274
Query: 289 VAGN--ALVINDLVDYVVEQGELAAEGAKEFID 319
AG+ + +V G +AA+ + +++
Sbjct: 275 AAGDIREKSLRQIVT-ATGDGSIAAQSVQHYVE 306
>pir||T34868 probable glutamate synthase small chain - Streptomyces coelicolor
>gi|5738513|emb|CAB52860.1| (AL109849) putative
glutamate synthase small subunit [Streptomyces
coelicolor A3(2)]
Length = 487
Score = 81.9 bits (199), Expect = 1e-14
Identities = 91/347 (26%), Positives = 143/347 (40%), Gaps = 57/347 (16%)
Query: 4 VAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEFA 63
VAVIG GPAG+AAA + G +V + + D +GG+L +GI FK E
Sbjct: 147 VAVIGSGPAGLAAAQQLTRAGHTVAVYERADRVGGLLR------YGIPEFKMEKRHINRR 200
Query: 64 YKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERHAFE 123
+ M R RT + + +D++KR + + AAG+ A +
Sbjct: 201 IEQM-RAEGTRFRTGVEIGRDLKATDLKKRYDAV-------------VIAAGSTT--ARD 244
Query: 124 IGITGDRVAGIFTAGE----AQTLMDIYGIMP-----GREILIVGSGDVGLIMARRFALE 174
+ + G + GI A E A + + + P G+ ++++G GD G +
Sbjct: 245 LPVPGRELNGIHQAMEYLPLANKVQEGDYVAPPITAEGKHVVVIGGGDTGADCVGTAHRQ 304
Query: 175 GARVKAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRV----------- 223
GA +E+MP PG R+ + P+ G RV V
Sbjct: 305 GAASVTQLEIMPRPGE-ERDAVRQPWPTFPMLYKVTSAHEEGGERVYAVSTTHFEGDEDG 363
Query: 224 --------KIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVK---LLTKVGVAIDPSTG 272
++ VD L PGTE + V ++ G K L+ + G+ +D
Sbjct: 364 NVQWLHMSEVEFVDGKLTSKPGTERKIPAQLVTLAMGFTGTDKDNGLVDQFGLELDER-- 421
Query: 273 GPIVNDR-LETTVPGIFVAGNALVINDLVDYVVEQGELAAEGAKEFI 318
G I D +T VPG+FVAG+A L+ + + +G AA GA F+
Sbjct: 422 GNIARDADFQTNVPGVFVAGDAGRGQSLIVWAIAEGRSAARGADRFL 468
>emb|CAC12113.1| (AL445066) probable thioredoxin reductase [Thermoplasma
acidophilum]
Length = 319
Score = 80.0 bits (194), Expect = 5e-14
Identities = 78/292 (26%), Positives = 130/292 (43%), Gaps = 21/292 (7%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
+DV ++G G AG +AA+ A G SV ++D+ GG+ + P + + + G E
Sbjct: 17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEA--PLVENYLGFKSIVGSE 73
Query: 62 FAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVIS-PSGIEEIRAKTIIYAAGARERH 120
A +L A++ E + I+K + + AK +I G +H
Sbjct: 74 LA-----KLFADHAANYAKIREGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKH 128
Query: 121 AFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVKA 180
+G+ G+ + F G + + G+ ++ +G G+ G I A + E +
Sbjct: 129 ---LGVKGE--SEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMS-EYVKNVT 182
Query: 181 VIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEF 240
+IE MP V + NIP ++ +V EI G G+ +V VK + G E
Sbjct: 183 IIEYMPKYMCENAYVQEIKKRNIPYIMNAQVTEIVGDGK--KVTGVKYKD---RTTGEEK 237
Query: 241 WVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGN 292
++ D V I GLIP L GV +D G +V+ R T+VPG++ AG+
Sbjct: 238 LIETDGVFIYVGLIPQTSFLKDSGVKLD-ERGYIVVDSRQRTSVPGVYAAGD 288
>sp|O32823|TRXB_LISMO THIOREDOXIN REDUCTASE (TRXR) >gi|2246749|gb|AAB63804.1| (AF009622)
thioredoxin reductase [Listeria monocytogenes]
Length = 319
Score = 78.8 bits (191), Expect = 1e-13
Identities = 82/331 (24%), Positives = 140/331 (41%), Gaps = 42/331 (12%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCI----HPGFGIHYFKEE 56
+YDV +IG GPAGM AA+ L ++I E GG + +PGF +
Sbjct: 7 IYDVIIIGAGPAGMTAALYTSRADLDTLMI-ERGVPGGQMVNTAEVENYPGF------DS 59
Query: 57 LTGPEFAYKLMNRLRDVEVRTSARVVEIINYSDIE-----KRLKVISPSGIEEIRAKTII 111
+ GP+ + K+++ + + Y DI+ K K ++ +G + +A+ II
Sbjct: 60 ILGPDLSDKMLSGAKQFGAEYA--------YGDIKEVVDGKEFKTVT-AGSKTYKARAII 110
Query: 112 YAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRF 171
A GA R ++G G+ + G + + RE+++VG GD +
Sbjct: 111 IATGAEHR---KLGAAGEE--ELSGRGVSYCAVCDGAFFKNRELIVVGGGDSAVEEGTYL 165
Query: 172 ALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKG-RVQRVKIVKVDE 230
+V V D + + V EI G G +V K+V
Sbjct: 166 TRYADKVTIVHRRDKLRAQQILQDRAFKDEKVDFIWNSTVEEIVGDGKKVTGAKLVST-- 223
Query: 231 NLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVA 290
+ G+E + VD V I GL+P K +G+ D G + ++ + T +PGIF A
Sbjct: 224 ----VDGSESIMPVDGVFIYVGLVPLTKAFLNLGITDD--EGYIVTDEEMRTNLPGIFAA 277
Query: 291 GN--ALVINDLVDYVVEQGELAAEGAKEFID 319
G+ A + +V G LA + A+++++
Sbjct: 278 GDVRAKSLRQIVT-ATGDGGLAGQNAQKYVE 307
>pir||F72705 probable thioredoxin reductase APE1061 - Aeropyrum pernix (strain
K1) >gi|5104731|dbj|BAA80046.1| (AP000060) 343aa long
hypothetical thioredoxin reductase [Aeropyrum pernix]
Length = 343
Score = 78.0 bits (189), Expect = 2e-13
Identities = 91/346 (26%), Positives = 157/346 (45%), Gaps = 53/346 (15%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQC----IHPGFGIHYFKEEL 57
YD ++G GPAG++AAI +S +++ + +GG L +PG G
Sbjct: 25 YDTVIVGAGPAGLSAAIYTTRFLMSTLIVSMD--VGGQLNLTNWIDDYPGMG-------- 74
Query: 58 TGPEFAYKLMNRLRDVEVRTSARVVEIINYSDIEKR----LKVISPSGIEEIRAKTIIYA 113
G E A KL+ + A++V + +++ V G+ E++A+T+I A
Sbjct: 75 -GLE-ASKLVESFKSHAEMFGAKIVTGVQVKTVDRLDDGWFLVRGSRGL-EVKARTVILA 131
Query: 114 AGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGRE-ILIVGSGDVGLIMARRFA 172
G+R R ++G+ G+ A + G + + + G++ +++VG GD A
Sbjct: 132 VGSRRR---KLGVPGE--AELAGRGVSYCSVCDAPLFKGKDAVVVVGGGD--------SA 178
Query: 173 LEGARVKA----VIELMPYPGGLARNVMILNDF----NIPLYLSHKVVEIRGKGRVQRVK 224
LEGA + + + L+ G + + NI L V EIRG+ RV+ V
Sbjct: 179 LEGALLLSGYVGKVYLVHRRQGFRAKPFYVEEARKKPNIEFILDSIVTEIRGRDRVESV- 237
Query: 225 IVKVDENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTV 284
+VK ++ G E + VD + I G P +L +G+ D S G +V++ + T++
Sbjct: 238 VVK-----NKVTGEEKELRVDGIFIEIGSEPPKELFEAIGLETD-SMGNVVVDEWMRTSI 291
Query: 285 PGIFVAGNALVINDLVDYVV---EQGELAAEGAKEFIDNDGIRSRK 327
PGIF AG+ + VV G +AA A ++ G+ K
Sbjct: 292 PGIFAAGDCTSMWPGFRQVVTAAAMGAVAAYSAYTYLQEKGLYKPK 337
>dbj|BAB07290.1| (AP001519) thioredoxin reductase (NADPH) [Bacillus halodurans]
Length = 315
Score = 78.0 bits (189), Expect = 2e-13
Identities = 79/327 (24%), Positives = 144/327 (43%), Gaps = 34/327 (10%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQC----IHPGFGIHYFKEE 56
+YDV + G GPAGM AA+ LS +++ E GG + +PGF +
Sbjct: 7 VYDVVIAGAGPAGMTAAVYTSRANLSTVMV-ERGVPGGQMANTEDVENYPGF------DH 59
Query: 57 LTGPEFAYKLMNRLRDVEVRTS-ARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAG 115
+ GPE + K+ + + + EII+ D++ + +G +E +A+ +I A G
Sbjct: 60 ILGPELSTKMFEHAKKFGAEYAYGDIKEIIDQGDLK-----LVKAGNKEYKARAVIVATG 114
Query: 116 ARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEG 175
A + ++G+ G++ + G + + G+E+++VG GD + A
Sbjct: 115 AEYK---KLGVPGEK--ELSGRGVSYCAVCDGAFFKGKELVVVGGGDSAVEEAVYLTRFA 169
Query: 176 ARVKAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRG-KGRVQRVKIVKVDENLRE 234
++V + ++ I H V +I G G+V V I E+ +
Sbjct: 170 SKVTIIHRRDQLRAQKILQQRAFDNDKIEFIWDHVVKQINGTDGKVSSVTI----EHAKT 225
Query: 235 IPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNA- 293
+F D V I G++P + + + + D G + N+ +ET+VPGIF AG+
Sbjct: 226 GEQQDF--KTDGVFIYIGMLPLNEAVKNLNILND--EGYIVTNEEMETSVPGIFAAGDVR 281
Query: 294 -LVINDLVDYVVEQGELAAEGAKEFID 319
+ +V G LAA+ + +I+
Sbjct: 282 EKSLRQIVT-ATGDGSLAAQNVQHYIE 307
>gi|11499149 thioredoxin reductase (trxB) [Archaeoglobus fulgidus]
>gi|7427758|pir||A69444 thioredoxin reductase (NADPH)
(EC 1.6.4.5) - Archaeoglobus fulgidus
>gi|2649006|gb|AAB89692.1| (AE000995) thioredoxin
reductase (trxB) [Archaeoglobus fulgidus]
Length = 300
Score = 77.6 bits (188), Expect = 2e-13
Identities = 80/299 (26%), Positives = 138/299 (45%), Gaps = 35/299 (11%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGI-LPQCI--HPGFGIHYFKEEL 57
MYDVA+IGGGPAG+ AA+ + GL + + D + + L I +PGF E
Sbjct: 1 MYDVAIIGGGPAGLTAALYSARYGLKTVFFETVDPVSQLSLAAKIENYPGF-------EG 53
Query: 58 TGPEFAYKLMNRLRDVEVRTSA--RVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAG 115
+G E L+ ++++ V+ A ++ ++ + VI+ G E AK II A G
Sbjct: 54 SGME----LLEKMKEQAVKAGAEWKLEKVERVERNGETFTVIAEGG--EYEAKAIIVATG 107
Query: 116 ARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEG 175
+ + E GI G+ + G + G+++++ GSG + A G
Sbjct: 108 GKHK---EAGIEGE--SAFIGRGVSYCATCDGNFFRGKKVIVYGSGKEAIEDAIYLHDIG 162
Query: 176 ARVKAVIELMPYPGGLARNVMI--LNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLR 233
V V P A ++ + IP++ S + +I G G+V+ K+V + +
Sbjct: 163 CEVTIVSRT---PSFRAEKALVEEVEKRGIPVHYSTTIRKIIGSGKVE--KVVAYNREKK 217
Query: 234 EIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGN 292
E EF ++ D + ++ G+ P ++ ++GV D S G V+ T V G+F AG+
Sbjct: 218 E----EFEIEADGIFVAIGMRPATDVVAELGVERD-SMGYIKVDKEQRTNVEGVFAAGD 271
>gi|11498012 NADH oxidase (noxA-3) [Archaeoglobus fulgidus]
>gi|7483900|pir||H69299 NADH oxidase (noxA-3) homolog -
Archaeoglobus fulgidus >gi|2650233|gb|AAB90837.1|
(AE001077) NADH oxidase (noxA-3) [Archaeoglobus
fulgidus]
Length = 551
Score = 77.3 bits (187), Expect = 3e-13
Identities = 78/309 (25%), Positives = 145/309 (46%), Gaps = 26/309 (8%)
Query: 3 DVAVIGGGPAGMAAA--IKARELGLSVILIDENDYLGGILPQCIHPGF------GIHYFK 54
+V VIGGG AG+ AA I+ ++ S+ +++ Y+ L +C P + + +
Sbjct: 2 NVVVIGGGAAGLKAASRIRRKDGDASITVVEAGKYVS--LGRCGLPYYVGGLVHEVDNLR 59
Query: 55 EELTGPEFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAA 114
E G +L++++V T EI K +K++ +E+ ++ A
Sbjct: 60 ETTYGAVRDEAYFKKLKNIDVLTETVATEI---DRSRKTVKIVRNGSEDELNYDYLVIAT 116
Query: 115 GARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALE 174
GAR GI + V + +A EA+ +++++ + +++G+G +GL A AL+
Sbjct: 117 GARPAKPPIEGIEAEGVVTLTSAEEAEKIIEMWE-EGAEKAVVIGAGFIGLESAE--ALK 173
Query: 175 GARVKA-VIELMPY--PGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDEN 231
++ VIE+M P L R + +L + +L K V + RV+ KIV D+
Sbjct: 174 NLDMEVTVIEMMDRVAPAMLDREMAVL----VENHLREKGVNVVTSTRVE--KIVSQDDK 227
Query: 232 LREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAG 291
+R + D V+++ G+ PN +L K G+ I TG V++ + T+ I+ G
Sbjct: 228 VRAVIANGKEYPADVVVVATGIKPNSELAEKAGLKIG-ETGAIWVDEYMRTSDESIYAGG 286
Query: 292 NALVINDLV 300
+ + LV
Sbjct: 287 DCVETTCLV 295
>emb|CAA11554.1| (AJ223804) 2-oxoglutarate dehydrogenase, E3 subunit [Arabidopsis
thaliana]
Length = 472
Score = 76.9 bits (186), Expect = 4e-13
Identities = 95/363 (26%), Positives = 153/363 (41%), Gaps = 61/363 (16%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPG--------FGIHYFK 54
DV +IGGGP G AAIKA +LGL I++ LGG C++ G H +
Sbjct: 10 DVVIIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG---TCLNVGCIPSKALLHSSHMYH 66
Query: 55 E----------ELTGPEFAYKLMNRLRDVEVRTSARVVE------IINYSDIEKRLKVIS 98
E +++ E M +D V+ R VE +NY ++ K +S
Sbjct: 67 EAKHVFANHGVKVSSVEVDLPAMLAQKDTAVKNLTRGVEGLFKKNKVNY--VKGYGKFLS 124
Query: 99 PSGIE---------EIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGI 149
PS + ++ K II A G+ + GIT D + + G A +L +I
Sbjct: 125 PSEVSVDTIDGENVVVKGKHIIVATGSDVKSL--PGITIDEKKIVSSTG-ALSLTEI--- 178
Query: 150 MPGREILIVGSGDVGLIMARRFALEGARVKAV---IELMPYPGGLARNVM--ILNDFNIP 204
++++++G+G +GL M + G+ V V +++P G R L +
Sbjct: 179 --PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQFQRSLEKQKMK 236
Query: 205 LYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVG 264
L KVV + G ++ IV+ E G + ++ D V++SAG P L
Sbjct: 237 FMLKTKVVGVDSSGDGVKL-IVEPAEG-----GEQTTLEADVVLVSAGRTPFTSGLDLEK 290
Query: 265 VAIDPSTGGPI-VNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAE---GAKEFIDN 320
+ ++ GG I VN+R T V G++ G+ + L E G E G +D
Sbjct: 291 IGVETDKGGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDY 350
Query: 321 DGI 323
D +
Sbjct: 351 DKV 353
>pir||B75551 glutamate synthase, small subunit - Deinococcus radiodurans
(strain R1) >gi|6457850|gb|AAF09769.1|AE001880_6
(AE001880) glutamate synthase, small subunit
[Deinococcus radiodurans]
Length = 488
Score = 76.9 bits (186), Expect = 4e-13
Identities = 91/353 (25%), Positives = 149/353 (41%), Gaps = 40/353 (11%)
Query: 4 VAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEFA 63
VAV+G GPAG+AAA + G V + ++ND +GG++ +GI FK + + +
Sbjct: 146 VAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGGLV------RYGIPDFKLDKSHIDRR 199
Query: 64 YKLMNRLRDVEVRTSARVVEIINYSDIEKRLKV-ISPSGIEEIRAKTIIYAAGARERHAF 122
+ M + V RT V + S I K ++P+ + E + ++ A G+
Sbjct: 200 IEQM-QAEGVTFRTGVLVGDWDENSKITNLSKERVTPAELRE-QFDAVVLAGGSETPR-- 255
Query: 123 EIGITGDRVAGIFTAGEAQTLMDIYGI---------MPGREILIVGSGDVGLIMARRFAL 173
++ G + GI A E + G+ ++++G GD G
Sbjct: 256 DLPAPGRELNGIHYAMEFLPQQNRVNAGDKFKGQIRADGKHVVVIGGGDTGSDCVGTSNR 315
Query: 174 EGARVKAVIELMPYPGGLARNVMILNDFNIPL--YLSHKVVEIR----------GK-GRV 220
GA E+MP P + + + L SH+ +R GK G+V
Sbjct: 316 HGAAGVTQFEVMPQPPEQENKPLTWPYWPMKLRTSTSHEEGAVREFAIATKEFIGKGGKV 375
Query: 221 QRVKIVKV---DENLREIPGTEFWVDVDTVIISAGLI-PNVKLLTKVGVAIDPS---TGG 273
V+ V+V D L EIPG+E D V+++ G P +L GV DP G
Sbjct: 376 TGVRTVRVEMKDGKLEEIPGSEETHKADLVLLAMGFTNPMQSVLDAFGVDKDPRGNVLAG 435
Query: 274 PIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEGAKEFIDNDGIRSR 326
+ T+VPG+F AG+ LV + + +G AA +F+ + + R
Sbjct: 436 TEEHGGYLTSVPGVFAAGDMRRGQSLVVWAIREGRQAARAVDQFLMGESVLPR 488
>gb|AAF34796.1|AF228640_1 (AF228640) lipoamide dehydrogenase precursor [Arabidopsis thaliana]
Length = 507
Score = 76.9 bits (186), Expect = 4e-13
Identities = 95/363 (26%), Positives = 153/363 (41%), Gaps = 61/363 (16%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPG--------FGIHYFK 54
DV +IGGGP G AAIKA +LGL I++ LGG C++ G H +
Sbjct: 45 DVVIIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG---TCLNVGCIPSKALLHSSHMYH 101
Query: 55 E----------ELTGPEFAYKLMNRLRDVEVRTSARVVE------IINYSDIEKRLKVIS 98
E +++ E M +D V+ R VE +NY ++ K +S
Sbjct: 102 EAKHVFANHGVKVSSVEVDLPAMLAQKDTAVKNLTRGVEGLFKKNKVNY--VKGYGKFLS 159
Query: 99 PSGIE---------EIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGI 149
PS + ++ K II A G+ + GIT D + + G A +L +I
Sbjct: 160 PSEVSVDTIDGENVVVKGKHIIVATGSDVKSL--PGITIDEKKIVSSTG-ALSLTEI--- 213
Query: 150 MPGREILIVGSGDVGLIMARRFALEGARVKAV---IELMPYPGGLARNVM--ILNDFNIP 204
++++++G+G +GL M + G+ V V +++P G R L +
Sbjct: 214 --PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQFQRSLEKQKMK 271
Query: 205 LYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVG 264
L KVV + G ++ IV+ E G + ++ D V++SAG P L
Sbjct: 272 FMLKTKVVGVDSSGDGVKL-IVEPAEG-----GEQTTLEADVVLVSAGRTPFTSGLDLEK 325
Query: 265 VAIDPSTGGPI-VNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAE---GAKEFIDN 320
+ ++ GG I VN+R T V G++ G+ + L E G E G +D
Sbjct: 326 IGVETDKGGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDY 385
Query: 321 DGI 323
D +
Sbjct: 386 DKV 388
>sp|O06465|AHPF_XANCH ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi|2098747|gb|AAC45426.1|
(U94336) alkyl hydroperoxide reductase subunit F
[Xanthomonas campestris]
Length = 530
Score = 76.1 bits (184), Expect = 7e-13
Identities = 77/301 (25%), Positives = 141/301 (46%), Gaps = 28/301 (9%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
+DV V+GGGPAG AAA+ A G+ + E + G +L F E GP+
Sbjct: 213 FDVLVVGGGPAGSAAAVYAARKGIRTGVAAER-FGGQVLDTMSIENF---ISVPETEGPK 268
Query: 62 FAYKLMNRLR--DVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARER 119
A L +R DV++ R ++I + + +++ +G +++KT+I + GAR R
Sbjct: 269 MAAALEQHVRQYDVDIMNLQRAEQLIP-AGADGLIEIKLANG-ASLKSKTVILSTGARWR 326
Query: 120 HAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVK 179
G + G+ + G+ + ++G G+ G+ A++ A +
Sbjct: 327 QMNVPGEDQYKNKGVAYCPHCDG-----PLFKGKRVAVIGGGNSGV----EAAIDLAGIV 377
Query: 180 AVIELMPYPGGLARNVMILNDF----NIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREI 235
A + L+ + L + ++ N+ + S + E+ G G+ + +V D +I
Sbjct: 378 AHVTLVEFDDKLRADEVLQRKLRSLHNVRIITSAQTTEVLGDGQ-KVTGLVYKDRTGGDI 436
Query: 236 PGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALV 295
++++ V + GL+PN + L + VA+ P G IV+DR +T VPG+F AG+A
Sbjct: 437 Q----HIELEGVFVQIGLLPNTEFL-RGTVALSP-RGEIIVDDRGQTDVPGVFAAGDATT 490
Query: 296 I 296
+
Sbjct: 491 V 491
>pir||B75024 glutamate synthase small chain. PAB1214 - Pyrococcus abyssi
(strain Orsay) >gi|5459146|emb|CAB50632.1| (AJ248288)
GLUTAMATE SYNTHASE SMALL CHAIN. [Pyrococcus abyssi]
Length = 475
Score = 75.7 bits (183), Expect = 9e-13
Identities = 93/345 (26%), Positives = 148/345 (41%), Gaps = 60/345 (17%)
Query: 4 VAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEFA 63
VAVIG GPAG+ A + ++G V + + GG+L +GI F+ E
Sbjct: 157 VAVIGAGPAGLTCAAELAKMGYEVTIFEALHEPGGVL------AYGIPEFR---LPKEIL 207
Query: 64 YKLMNRLR--DVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERHA 121
K + +L+ VE++T V + P +EE A I AG +
Sbjct: 208 RKELKKLKFLGVEIKTDHIVGRTVTI-----------PELLEEYDAIFISTGAGTPKL-- 254
Query: 122 FEIGITGDRVAGIFTAGEAQT---LMDIY-------GIMPGREILIVGSGDVGLIMARRF 171
+ I G + GI++A E T LM Y I+ G+ ++++G+G+ + AR
Sbjct: 255 --LKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIVVGKRVIVIGAGNTAMDAARSA 312
Query: 172 ALEGARVKAVIELMPYPGG------LARNVMILNDFNIPLYLSHKVVEIRG--KGRVQRV 223
GA V ++ Y G V + + VE G +GRV+ V
Sbjct: 313 LRLGAEV-----IIAYRRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAV 367
Query: 224 KIVKV-------DENLREIPGTEFW--VDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGP 274
K K+ R+I GT + V+ DTVII+ G PN K+L + + G
Sbjct: 368 KFEKMKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPN-KILWRTTPGLKVREDGT 426
Query: 275 -IVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEGAKEFI 318
IV++ L T++PG+F G+A+ V + G AA+ E++
Sbjct: 427 IIVDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
>emb|CAB60740.1| (Y18636) thioredoxine reductase [Staphylococcus aureus]
Length = 311
Score = 75.7 bits (183), Expect = 9e-13
Identities = 88/334 (26%), Positives = 144/334 (42%), Gaps = 48/334 (14%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIH----PGFGIHYFKEEL 57
+D+A+IG GPAGM AA+ A L ++I E GG + PGF E +
Sbjct: 6 FDIAIIGAGPAGMTAAVYASRANLKTVMI-ERGIPGGQMANTEEVENFPGF------EMI 58
Query: 58 TGPEFAYKLMNRLRDVEVRTSARVVEIINYSDIEK-----RLKVISPSGIEEIRAKTIIY 112
TGP+ + K+ + + + Y DI+ KVI+ G +E+ AK +I
Sbjct: 59 TGPDLSTKMFEHAK--------KFGAVYQYGDIKSVEDKGEYKVIN-FGNKELTAKAVII 109
Query: 113 AAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGL---IMAR 169
A GA + +IG+ G++ G G + + + + ++G GD +
Sbjct: 110 ATGAEYK---KIGVPGEQELG--GRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLT 164
Query: 170 RFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGK-GRVQRVKIVKV 228
+FA + V EL + ++ ND I SH + I K G+V V +
Sbjct: 165 KFADKVTIVHRRDELRAQ--RILQDRAFKND-KIDFIWSHTLKSINEKDGKVGSVTLTST 221
Query: 229 DENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIF 288
+ G+E + D V I G+ P +G+ D G + D + T+VPGIF
Sbjct: 222 KD------GSEETHEADGVFIYIGMKPLTAPFKDLGITND--VGYIVTKDDMTTSVPGIF 273
Query: 289 VAGNA--LVINDLVDYVVEQGELAAEGAKEFIDN 320
AG+ + +V G +AA+ A E+I++
Sbjct: 274 AAGDVRDKGLRQIVT-ATGDGSIAAQSAAEYIEH 306
>pir||F82936 thioredoxin reductase UU074 [imported] - Ureaplasma urealyticum
>gi|6899025|gb|AAF30479.1|AE002107_3 (AE002107)
thioredoxin reductase [Ureaplasma urealyticum]
Length = 309
Score = 75.3 bits (182), Expect = 1e-12
Identities = 85/333 (25%), Positives = 144/333 (42%), Gaps = 48/333 (14%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGG--ILPQCIHPGFGIHYFKEELT 58
+YD+ +IG GPAG+AAA+ A+ GL+VI++ E + GG L + GI+ +
Sbjct: 5 VYDLVIIGAGPAGLAAAVYAKRSGLNVIIV-EKQFPGGKIALTSNVENYLGIN----SIP 59
Query: 59 GPEFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARE 118
GPE AYK+ ++ ++ V + I+ + K++K+ + + + KT+I A G
Sbjct: 60 GPELAYKMYEQVLNLNVSIIYEAADEISLKEKYKKIKLTT----QTLITKTVIIATGTEN 115
Query: 119 RHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARV 178
R +G GI + + + ++GSG+ + A A V
Sbjct: 116 RRLNILGELEFENKGISYCAICDG-----PLYKNKAVSVIGSGNSAVEEAIYLATIAKEV 170
Query: 179 KAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGT 238
+ + + N NI +Y + + E G ++ +K + N
Sbjct: 171 HLIANKPQFKAEQQLVQIANNTPNIKIYYNKQTFEFFGHQFLEGLKFRDLITN------- 223
Query: 239 EFWVDVDTVIISA-----GLIPNVKLLTKVGVAIDPSTGGPIVNDR-LETTVPGIFVAGN 292
+V T+ I A GL+P+ + + I G I D+ ++T+V GIF AG
Sbjct: 224 ----EVTTLNIEANFTFIGLLPS--RINTNNLCIFNEVNGFITTDKNMQTSVCGIFAAG- 276
Query: 293 ALVINDLVDYVVEQ-------GELAAEGAKEFI 318
D+VD V Q G +AA AKE+I
Sbjct: 277 -----DIVDKNVRQIATATNDGVIAALYAKEYI 304
>pir||H82668 subunit F of alkyl hydroperoxide reductase XF1531 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9106569|gb|AAF84340.1|AE003983_2 (AE003983) subunit
F of alkyl hydroperoxide reductase [Xylella fastidiosa]
Length = 571
Score = 75.3 bits (182), Expect = 1e-12
Identities = 78/307 (25%), Positives = 136/307 (43%), Gaps = 40/307 (13%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
+DV V+G GPAG AAA+ A G+ L+ E + G +L F E GP
Sbjct: 254 FDVLVVGAGPAGTAAAVYAARKGVRTGLVAER-FGGQVLDTMTIENF---ISVPETDGPR 309
Query: 62 FAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIR--------AKTIIYA 113
L LR E V+I+N +E L +G E+R ++T+I +
Sbjct: 310 MVAALEQHLRQYE-------VDIMNLQRVE-TLVPAGENGFIEVRLASGASLSSRTVILS 361
Query: 114 AGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFAL 173
GAR R G R G+ + G+ + ++G G+ G+ A+
Sbjct: 362 TGARWRQMNVPGEDEYRNKGVAYCPHCDG-----PLFKGKRVAVIGGGNSGV----EAAI 412
Query: 174 EGARVKAVIELMPYPGGLARNVMILNDF----NIPLYLSHKVVEIRGKGRVQRVKIVKVD 229
+ A + + + L+ + L + ++ N+ + + + E+RG G+ + +V VD
Sbjct: 413 DLAGIASYVTLLEFDTKLRADEVLQRKLRSMSNVEVIMGAQTTEVRGDGK-KVTGLVYVD 471
Query: 230 ENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFV 289
+ G F + ++ V + GL+PN + L K V + P G +V++ T++PG+F
Sbjct: 472 RS----TGGSFTLALEGVFVQIGLLPNTEWL-KGRVELSP-RGEIVVDECGHTSLPGVFA 525
Query: 290 AGNALVI 296
AG+A +
Sbjct: 526 AGDATTV 532
>gb|AAG17888.1| (AF295339) dihydrolipoamide dehydrogenase precursor [Solanum
tuberosum]
Length = 504
Score = 74.9 bits (181), Expect = 2e-12
Identities = 96/362 (26%), Positives = 148/362 (40%), Gaps = 63/362 (17%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPG--------FGIHYFK 54
DV VIGGGP G AAIKA +LGL I++ LGG C++ G H F
Sbjct: 42 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGTLGG---TCLNVGCIPSKALLHSSHMFH 98
Query: 55 E----------ELTGPEFAYKLMNRLRDVEVRTSARVVE------IINYSDIEKRLKVIS 98
E + + E M +D V R +E +NY ++ K +S
Sbjct: 99 EAQHSFANHGVKFSSVEVDLPAMMGQKDKAVSNLTRGIEGLFKKNKVNY--VKGYGKFLS 156
Query: 99 PS---------GIEEIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGI 149
PS G ++ K II A G+ + GIT D + + G A L +I
Sbjct: 157 PSEISVDTVEGGNSVVKGKNIIIATGSDVKGL--PGITIDEKKIVSSTG-ALALTEI--- 210
Query: 150 MPGREILIVGSGDVGLIMARRFALEGARVKAV---IELMPYPGGLARNVM--ILNDFNIP 204
+ ++++G+G +GL M + G+ V V +++P G R L +
Sbjct: 211 --PKRLVVIGAGYIGLEMGSVWGRLGSEVTVVEFASDIVPTMDGEVRKQFQRALEKQKMK 268
Query: 205 LYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVK--LLTK 262
L+ KVV + G ++ + G + ++ D V++SAG +P L
Sbjct: 269 FMLNTKVVSVDATGDGVKLTLEP------SAGGDQTILEADVVLVSAGRVPFTSGLGLDT 322
Query: 263 VGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAE---GAKEFID 319
+GV D G +VN+R T VPG+ G+ + L E G E G + +D
Sbjct: 323 IGVETD-KAGRILVNERFATNVPGVHAIGDVIPGPMLAHKAEEDGVACVEFIAGKEGHVD 381
Query: 320 ND 321
D
Sbjct: 382 YD 383
>pir||G70655 probable small subunit of NADH-dependent glutamate synthase -
Mycobacterium tuberculosis (strain H37RV)
>gi|1781098|emb|CAB06232.1| (Z83864) gltD [Mycobacterium
tuberculosis]
Length = 488
Score = 74.1 bits (179), Expect = 3e-12
Identities = 85/349 (24%), Positives = 143/349 (40%), Gaps = 59/349 (16%)
Query: 4 VAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEFA 63
VAV+G GPAG+AAA + G +V + + D +GG+L +GI FK E +
Sbjct: 147 VAVVGSGPAGLAAAQQLTRAGHTVTVFEREDRIGGLLR------YGIPEFKMEKRHLDRR 200
Query: 64 YKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAK--TIIYAAGARERHA 121
M R E R V I+ E++RA ++ A GA
Sbjct: 201 LDQM-RSEGTEFRPGVNVGVDIS---------------AEKLRADFDAVVLAGGATAWR- 243
Query: 122 FEIGITGDRVAGIFTA----------GEAQTLMDIYGIMP----GREILIVGSGDVGLIM 167
E+ I G + G+ A E ++D G P G++++I+G GD G
Sbjct: 244 -ELPIPGRELEGVHQAMEFLPWANRVQEGDDVLDEDGQPPITAKGKKVVIIGGGDTGADC 302
Query: 168 ARRFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYLS-------HKVVEIRGK--- 217
+GA E+MP P + + +S +V + +
Sbjct: 303 LGTVHRQGAIAVHQFEIMPRPPDARAESTPWPTYPLMYRVSAAHEEGGERVFSVNTEAFV 362
Query: 218 ---GRVQRVK---IVKVDENLREIPGTEFWVDVDTVIISAGLI--PNVKLLTKVGVAIDP 269
GRV ++ + +D ++ G++F ++ D V+++ G + LLT +GV
Sbjct: 363 GTDGRVSALRAHEVTMLDGKFVKVEGSDFELEADLVLLAMGFVGPERAGLLTDLGVKFT- 421
Query: 270 STGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEGAKEFI 318
G D +T+VPG+FVAG+ L+ + + +G AA ++
Sbjct: 422 ERGNVARGDDFDTSVPGVFVAGDMGRGQSLIVWAIAEGRAAAAAVDRYL 470
>sp|O05204|AHPF_STAAU ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi|1916317|gb|AAB51152.1|
(U92441) alkyl hydroperoxide reductase subunit F
[Staphylococcus aureus]
Length = 507
Score = 74.1 bits (179), Expect = 3e-12
Identities = 80/300 (26%), Positives = 140/300 (46%), Gaps = 37/300 (12%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYF--KEELTG 59
YDV ++GGGPA +AAI GL ++ D +GG ++ GI F +E TG
Sbjct: 206 YDVLIVGGGPASGSAAIYTARKGLRTGIV--ADRIGG----QVNDTAGIENFITVKETTG 259
Query: 60 PEFAYKLMNRL--RDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGAR 117
EF+ L + D++ T R +I ++ +KV +G + +KT+I A GA
Sbjct: 260 SEFSSNLAAHIDQYDIDAMTGIRATDI---EKTDEAIKVTLENG-AVLESKTVIIATGAG 315
Query: 118 ERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGAR 177
R ++ I G+ + G A + +++ ++G G+ G+ A++ A
Sbjct: 316 WR---KLNIPGEE--QLINKGVAFCPHCDGPLFENKDVAVIGGGNSGV----EAAIDLAG 366
Query: 178 VKAVIELMPYPGGL-ARNVM---ILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLR 233
+ + L + L A NV+ + + N+ + + K E+ G+ V ++ ++
Sbjct: 367 IVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMN---- 422
Query: 234 EIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDR-LETTVPGIFVAGN 292
G E +++D + + GL+PN L A++ + G IV DR T VPGIF AG+
Sbjct: 423 --TGEEHLLNLDGIFVQIGLLPNTSWLND---AVELNERGEIVIDRNNNTNVPGIFAAGD 477
>pir||D71076 probable glutamate synthase small chain - Pyrococcus horikoshii
>gi|3257287|dbj|BAA29970.1| (AP000004) 472aa long
hypothetical glutamate synthase small chain [Pyrococcus
horikoshii]
Length = 472
Score = 74.1 bits (179), Expect = 3e-12
Identities = 92/342 (26%), Positives = 152/342 (43%), Gaps = 55/342 (16%)
Query: 4 VAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEFA 63
VAV+G GPAG+ A + ++G V + + GG+L +GI F+ +
Sbjct: 151 VAVVGAGPAGLTCAGELAKMGYKVTIFEALHKPGGVL------AYGIPEFRLPKEILDHE 204
Query: 64 YKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERHAFE 123
K + L VE+RT V + + ++ ++E A I AG +
Sbjct: 205 LKKLKML-GVEIRTDHVVGKTVTLDEL-----------LQEYDAVFIGTGAGTPKL---- 248
Query: 124 IGITGDRVAGIFTAGEAQT---LMDIYG-------IMPGREILIVGSGDVGLIMARRFAL 173
+ I G + I++A E T LM Y I G++++++G+G+ + AR
Sbjct: 249 LNIPGILLDRIYSANEFLTRINLMKAYEFPEYDTPIAVGKKVIVIGAGNTAMDAARSALR 308
Query: 174 EGARVKAVIELMPYPGG----LARNVMILN--DFNIPLYLSHKVVEIRG--KGRVQRVKI 225
GA V + Y G AR I + + + + VE G GRV+ VK
Sbjct: 309 LGAEVT-----IAYRRGREDMTAREEEIKHAEEEGVKFEFFLQPVEFIGDENGRVKAVKF 363
Query: 226 VKV-------DENLREIPGTEFWV--DVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIV 276
+ + R+I GT +V + DTVII+ GL PN K++T+ G G +V
Sbjct: 364 ERTKPLEERDSKGKRKIVGTGEYVTLEADTVIIAIGLEPN-KIITEDGRLKTNPDGTIVV 422
Query: 277 NDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEGAKEFI 318
++ L T++PG+F G+A+ V + G+ AA+ E+I
Sbjct: 423 DENLMTSIPGVFAGGDAIRGEATVILAMGDGKRAAKAIDEYI 464
>sp|P09832|GLTD_ECOLI GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN (GLUTAMATE SYNTHASE BETA
SUBUNIT) (NADPH-GOGAT) (GLTS BETA CHAIN)
>gi|7448188|pir||G65112 glutamate synthase (NADPH) (EC
1.4.1.13) small chain - Escherichia coli
>gi|606152|gb|AAA58015.1| (U18997) glutamate synthase,
small subunit [Escherichia coli]
>gi|1789606|gb|AAC76245.1| (AE000400) glutamate
synthase, small subunit [Escherichia coli K12]
Length = 472
Score = 73.7 bits (178), Expect = 3e-12
Identities = 85/352 (24%), Positives = 149/352 (42%), Gaps = 65/352 (18%)
Query: 4 VAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEFA 63
VA+IG GPAG+A A G+ ++ D + +GG+L FGI FK E
Sbjct: 149 VAIIGAGPAGLACADVLTRNGVKAVVFDRHPEIGGLLT------FGIPAFKLE------- 195
Query: 64 YKLMNRLRDVEVRTSARVVEIINYSDIEKRL--KVISPSGIEEIRAKTIIYAAGARERHA 121
EV T R EI IE +L +V ++++ + G +
Sbjct: 196 ---------KEVMTRRR--EIFTGMGIEFKLNTEVGRDVQLDDLLSDYDAVFLGVGTYQS 244
Query: 122 FEIGITGDRVAGIFTA------------GEAQTLMDIYGIMPGREILIVGSGDVGLIMAR 169
G+ + G++ A G +T + + M G+ ++++G GD + R
Sbjct: 245 MRGGLENEDADGVYAALPFLIANTKQLMGFGETRDEPFVSMEGKRVVVLGGGDTAMDCVR 304
Query: 170 RFALEGAR-----VKAVIELMPYPGGLARNVMILNDFNIPLYLSHKV--VEIRGKGRVQR 222
+GA+ + E MP G R V + + + + +E+ G G+V
Sbjct: 305 TSVRQGAKHVTCAYRRDEENMP---GSRREVKNAREEGVEFKFNVQPLGIEVNGNGKVSG 361
Query: 223 VKIVKVD---------ENLREIPGTEFWVDVDTVIISAGLIP-NVKLLTKVGVAIDPSTG 272
VK+V+ + + G+E V D VI++ G P N++ L K V +D +
Sbjct: 362 VKMVRTEMGEPDAKGRRRAEIVAGSEHIVPADAVIMAFGFRPHNMEWLAKHSVELD--SQ 419
Query: 273 GPIV-----NDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEGAKEFID 319
G I+ ++ +T+ P IF G+ + +DLV + +G AA+G +++
Sbjct: 420 GRIIAPEGSDNAFQTSNPKIFAGGDIVRGSDLVVTAIAEGRKAADGIMNWLE 471
>dbj|BAA21091.1| (D86223) glutamate synthase [Pyrococcus sp.]
Length = 481
Score = 73.4 bits (177), Expect = 5e-12
Identities = 91/339 (26%), Positives = 145/339 (41%), Gaps = 50/339 (14%)
Query: 4 VAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEFA 63
VA+IG GPAG+ AA + +LG V + + GG+L +GI F+ E
Sbjct: 159 VAIIGAGPAGLTAAGELAKLGYDVTIYEALHEPGGVLM------YGIPEFR---LPKEIV 209
Query: 64 YKLMNRLR--DVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERHA 121
K + +LR V++ T V + ++ ++E A I AG
Sbjct: 210 NKEIEKLRKLGVKILTDHVVGRTVTIEEL-----------LQEYDAVFIGSGAGTPRL-- 256
Query: 122 FEIGITGDRVAGIFTAGEAQT---LMDIY-------GIMPGREILIVGSGDVGLIMARRF 171
I G + GI+TA E T LM Y + G++++++G+G+ + AR
Sbjct: 257 --INAPGINLNGIYTANEFLTRVNLMKAYLFPEYDTPVYVGKKVIVIGAGNTAMDAARSA 314
Query: 172 ALEGARVKAVIELMPYP-GGLARNVMILNDFNIPLYLSHKVVEIRG--KGRVQRVKIVK- 227
GA V V + I VE G GRV+ VK K
Sbjct: 315 RRFGAEVTIAYRRGEEDVSAREEEVEHAKEEGIKFVYFVNPVEFIGDENGRVKAVKFEKM 374
Query: 228 --VDE----NLREIPGTEFWV--DVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDR 279
+DE R+I GT +V + DTVII+ G PN ++ G+ ++ G +V++
Sbjct: 375 KALDERDARGKRKIVGTGEYVTLEADTVIIAIGKHPNRLIINTPGLKVE--RGKIVVDEN 432
Query: 280 LETTVPGIFVAGNALVINDLVDYVVEQGELAAEGAKEFI 318
L T++PG+F G+A+ V + G AA+ E++
Sbjct: 433 LMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
>gi|11497870 NADH oxidase (noxA-1) [Archaeoglobus fulgidus]
>gi|7447165|pir||F69281 NADH oxidase (noxA-1) homolog -
Archaeoglobus fulgidus >gi|2650383|gb|AAB90976.1|
(AE001088) NADH oxidase (noxA-1) [Archaeoglobus
fulgidus]
Length = 439
Score = 73.4 bits (177), Expect = 5e-12
Identities = 85/307 (27%), Positives = 134/307 (42%), Gaps = 53/307 (17%)
Query: 4 VAVIGGGPAGMAAA--IKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFK------- 54
VA+IGGG AGM+AA +KA V + +++ ++ H GI +F
Sbjct: 3 VAIIGGGAAGMSAASRVKALRPNWDVKVFEKSRWVS-------HAPCGIPFFVGGAVEKF 55
Query: 55 EELTGPEFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAA 114
+EL + Y R R ++V T+ARVVEI E RL V +++A
Sbjct: 56 DELCAYDIDY--FKRERGIDVHTNARVVEI-----EEGRLTVDEGGKEASYEWDKLLFAT 108
Query: 115 GARERHAFEIGITGDRVAGIFTAGEAQTLMDI-YGIMPGREILIVGSGDVGLIMARRFAL 173
G++ A + + G+ + G+ + + + M +++VGSG +G+ MA
Sbjct: 109 GSK---AVRLNVEGENLEGVIYVDDIENAERVKIEAMKVDNVVVVGSGYIGVEMADAITR 165
Query: 174 EGARVKAVIELM-----PYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKV 228
G V VIE+M Y +A + + + L LS KV GK RV+ KV
Sbjct: 166 LGKNV-TVIEVMERPLPEYDAEIAAIIKSEMEKYVNLRLSEKVTAFEGKDRVE-----KV 219
Query: 229 DENLREIPGTEFWVDVDTVIISAGLIPNVKL---LTKVGVAIDPSTGGPIVNDRLETTVP 285
N E P + II+ G+ PN L ++GV G N R+ET+
Sbjct: 220 VTNKGEYP-------CELAIIAVGVAPNTDLAKGFVELGV-----KGAIRTNSRMETSRE 267
Query: 286 GIFVAGN 292
++ AG+
Sbjct: 268 NVYAAGD 274
>dbj|BAB05342.1| (AP001512) unknown conserved protein [Bacillus halodurans]
Length = 322
Score = 73.4 bits (177), Expect = 5e-12
Identities = 78/325 (24%), Positives = 138/325 (42%), Gaps = 35/325 (10%)
Query: 4 VAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEFA 63
V ++GGGP G+AAAI + GL ++I++++ + I H F K E+ F
Sbjct: 6 VIIVGGGPCGLAAAIALQNEGLKPLVIEKDNIVSAIHRYPTHQTFFSTSEKLEIGQVPFL 65
Query: 64 --------------YKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKT 109
Y+ + + + + V RV+++ D V++ K
Sbjct: 66 TEERKPKRSQALVYYREVVKRKQIRVNPFERVIKVTKQED--GTFYVVTSK--RTYHCKQ 121
Query: 110 IIYAAGARERHAFEIGITGDRVAGIF-TAGEAQTLMDIYGIMPGREILIVGSGDVGLIMA 168
++ A G + H +G+ G+ + +F EA D ++++++G + + A
Sbjct: 122 VVIATGYYD-HPNSLGVPGEDLPHVFHYFKEAHPYFD-------QDVVVIGGKNSAVDAA 173
Query: 169 RRFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKV 228
GARV + Y + IL +F ++H V++ + +V+R+ +V
Sbjct: 174 LELEKAGARVTVLYRGDTYSDSV--KPWILPEF--VSLVNHDKVKMVFRAQVKRITASEV 229
Query: 229 DENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVN-DRLETTVPGI 287
+ E G D V G P+ L +GVAID TG PI + + +ET V GI
Sbjct: 230 E---YETQGERKAARADFVFAMIGYHPDHNFLKTMGVAIDHDTGRPIHDPETMETNVEGI 286
Query: 288 FVAGNALVINDLVDYVVEQGELAAE 312
F+AG N+ + +E G E
Sbjct: 287 FIAGVIAAGNNANEIFIENGRFHGE 311
>pir||A49911 NADH oxidase (hydrogen peroxide-forming) (EC 1.6.-.-) -
Amphibacillus xylanus >gi|216220|dbj|BAA33809.1|
(AB018435) NADH oxidase [Amphibacillus xylanus]
Length = 509
Score = 73.0 bits (176), Expect = 6e-12
Identities = 80/299 (26%), Positives = 138/299 (45%), Gaps = 36/299 (12%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYF--KEELTG 59
+DV VIGGGPAG ++AI A G+ V +I D GG + + GI F + G
Sbjct: 209 FDVLVIGGGPAGASSAIYAARKGIRVGII--ADRFGGQVMDTL----GIENFIGTKYTEG 262
Query: 60 PEFAYKLMNRLRDVEVRTSARVVEIINYSDIEKR-LKVISPSGIEEIRAKTIIYAAGARE 118
P+ ++ + + + V++ + +IEK+ L + +++KTII A GAR
Sbjct: 263 PKLISEIEQHVNEYNI----DVMKGLRAHNIEKKDLFEVQLDNGAVLKSKTIILATGARW 318
Query: 119 RHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARV 178
R +IG+ G++ G A + G+ + +VG G+ G+ AL+ A +
Sbjct: 319 R---DIGVPGEK--EYKNKGVAYCTHCDAPLFEGKHVAVVGGGNSGI----ESALDLAGI 369
Query: 179 KAVIELMPYPGGLARNVMILNDF----NIPLYLSHKVVEIRGKGRVQRVKIVKVDENLRE 234
+ + + L + ++ N+ + L+ + EI G V+ + + N
Sbjct: 370 VKHVTVFEFMSELKADAVLQERLRSLPNVDVILNAQTTEITGDETVKGISYIDRTTN--- 426
Query: 235 IPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRL-ETTVPGIFVAGN 292
E V++ I GL PN + L G ++ + G IV D+ +T+VPGIF AG+
Sbjct: 427 ---EEKHVELQGAFIQIGLAPNTEWL---GDTVERNQIGEIVIDKKGQTSVPGIFAAGD 479
>sp|O82864|AHPF_PSEPU ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F >gi|3298356|dbj|BAA31469.1|
(AB010689) AhpF [Pseudomonas putida]
Length = 520
Score = 73.0 bits (176), Expect = 6e-12
Identities = 76/301 (25%), Positives = 136/301 (44%), Gaps = 28/301 (9%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
+DV V+GGGPAG AAAI A G+ + E + G +L F +E GP+
Sbjct: 212 FDVLVVGGGPAGAAAAIYAARKGIRTGVAAER-FGGQVLDTLAIENF---ISVQETEGPK 267
Query: 62 FAYKLMNRLR--DVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARER 119
A L ++ DV++ R +I + E L + +G ++AKT+I A GAR R
Sbjct: 268 LATALEEHVKQYDVDIMNLQRGEALIPAA--EGGLHEVRLAGGASLKAKTVILATGARWR 325
Query: 120 HAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVK 179
G R G+ + G+ + ++G G+ G+ A++ A +
Sbjct: 326 EMNVPGEQEYRGRGVAYCPHCDG-----PLFKGKRVAVIGGGNSGV----EAAIDLAGIV 376
Query: 180 AVIELMPYPGGLARNVMILNDF----NIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREI 235
A + L+ + L + ++ N+ + S E+ G G ++V ++ + +
Sbjct: 377 AQVTLIEFDSQLRADAVLQRKLRSLPNVNVITSALTTEVLGNG--EKVTGLRYKDRSTD- 433
Query: 236 PGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALV 295
+ V ++ + + GL+PN L K V + P G IV+ + +T++PG+F AG+
Sbjct: 434 --EQHEVALEGIFVQIGLLPNTDWL-KGTVELSP-RGEIIVDAKGQTSIPGVFAAGDVTT 489
Query: 296 I 296
+
Sbjct: 490 V 490
>pir||H75052 NADH oxidase (noxa-1) PAB0936 - Pyrococcus abyssi (strain Orsay)
>gi|5458830|emb|CAB50317.1| (AJ248287) NADH oxidase
(noxA-1) [Pyrococcus abyssi]
Length = 446
Score = 73.0 bits (176), Expect = 6e-12
Identities = 77/306 (25%), Positives = 137/306 (44%), Gaps = 48/306 (15%)
Query: 4 VAVIGGGPAGMAAAIKARELG--LSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
V +IGGG AGM+AA + + L V + + +++ H GI Y E ++ E
Sbjct: 10 VVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVS-------HAPCGIPYVVEGISPTE 62
Query: 62 FAYKLMN-------RLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAA 114
KLM+ + R +++ +A V+E+ ++V G + +++A
Sbjct: 63 ---KLMHYPPEVFIKKRGIDLHLNAEVIEVDT-----GYVRVREKDGEKSYEWDYLVFAN 114
Query: 115 GARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGR---EILIVGSGDVGLIMARRF 171
GA + I G + G+FTA + I M +++IVG G +GL MA F
Sbjct: 115 GASPQVP---AIEGVDLKGVFTADLPPDAVAIREYMEKNRVEDVVIVGGGYIGLEMAEAF 171
Query: 172 ALEGARVKAVIE-----LMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIV 226
+G RV ++ + + + ++ L L V+ I GK RV++V +
Sbjct: 172 VAQGKRVTMIVRGERILRRSFDKEVTDIIEEKLKQHVNLRLQEIVLRIEGKDRVEKV-VT 230
Query: 227 KVDENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPG 286
E D VI++ G+ PN++L ++GV I TG N++++T+V
Sbjct: 231 DAGE-----------YRADLVILATGIKPNIELARQLGVRIG-ETGAIWTNEKMQTSVEN 278
Query: 287 IFVAGN 292
++ AG+
Sbjct: 279 VYAAGD 284
>pir||G64491 thioredoxin reductase (NADPH) (EC 1.6.4.5) - Methanococcus
jannaschii >gi|1592167|gb|AAB99556.1| (U67594)
thioredoxin reductase (trxB) [Methanococcus jannaschii]
Length = 301
Score = 72.2 bits (174), Expect = 1e-11
Identities = 73/298 (24%), Positives = 131/298 (43%), Gaps = 33/298 (11%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCI---HPGFGIHYFKEEL 57
++D +IG GP G+ A I A L+ + I++ + G I I +PGF EE+
Sbjct: 2 IHDTIIIGAGPGGLTAGIYAMRGKLNALCIEKENAGGRIAEAGIVENYPGF------EEI 55
Query: 58 TGPEFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGAR 117
G E A K N + + E+I E+ KVI+ + E KTI+ A G +
Sbjct: 56 RGYELAEKFKNHAE--KFKLPIIYDEVIKIETKERPFKVITKN--SEYLTKTIVIATGTK 111
Query: 118 ERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGAR 177
+ ++G+ D+ G T+ D + + +E++++G ++ A L+
Sbjct: 112 PK---KLGLNEDKFIG--RGISYCTMCDAFFYL-NKEVIVIGRDTPAIMSA--INLKDIA 163
Query: 178 VKAVIELMPYPGGLARNVM---ILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLRE 234
K ++ A ++M + N+ + + K +EI G+ R + VKI
Sbjct: 164 KKVIVITDKSELKAAESIMLDKLKEANNVEIIYNAKPLEIVGEERAEGVKI--------S 215
Query: 235 IPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGN 292
+ G E + D + IS G +PN + L G+ +D G ++ T + GI+ G+
Sbjct: 216 VNGKEEIIKADGIFISLGHVPNTEFLKDSGIELD-KKGFIKTDENCRTNIDGIYAVGD 272
>gi|4557525 dihydrolipoamide dehydrogenase precursor; E3 component of pyruvate
dehydrogenase [Homo sapiens]
>gi|118674|sp|P09622|DLDH_HUMAN DIHYDROLIPOAMIDE
DEHYDROGENASE, MITOCHONDRIAL PRECURSOR
>gi|66123|pir||DEHULP dihydrolipoamide dehydrogenase (EC
1.8.1.4) precursor - human >gi|307137|gb|AAA59527.1|
(J03490) lipoamide dehydrogenase precursor old gene name
'LAD' [Homo sapiens]
Length = 509
Score = 71.8 bits (173), Expect = 1e-11
Identities = 89/355 (25%), Positives = 158/355 (44%), Gaps = 65/355 (18%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGF--------GIHYFK 54
DV VIG GP G AAIKA +LG + I++N+ LGG C++ G HY+
Sbjct: 43 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG---TCLNVGCIPSKALLNNSHYY- 98
Query: 55 EELTGPEFAYK-------LMNRLRDVEVRTSA---------------RVVEIINYSDIEK 92
G +FA + +N + +E +++A +VV + Y I
Sbjct: 99 HMAHGTDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITG 158
Query: 93 RLKVI---SPSGIEEIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGI 149
+ +V + G + I K I+ A G+ E F GIT D + + G A +L +
Sbjct: 159 KNQVTATKADGGTQVIDTKNILIATGS-EVTPFP-GITIDEDTIVSSTG-ALSLKKV--- 212
Query: 150 MPGREILIVGSGDVGLIMARRFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYLSH 209
+++++G+G +G+ + + GA V AV E + + GG+ ++ I +F
Sbjct: 213 --PEKMVVIGAGVIGVELGSVWQRLGADVTAV-EFLGHVGGVGIDMEISKNF-------Q 262
Query: 210 KVVEIRGKGRVQRVKIV--------KVDENLREIPGTEFWV-DVDTVIISAGLIPNVKL- 259
++++ +G K+ K+D ++ G + V D +++ G P K
Sbjct: 263 RILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNL 322
Query: 260 -LTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEG 313
L ++G+ +DP P VN R +T +P I+ G+ + L ++G + EG
Sbjct: 323 GLEELGIELDPRGRIP-VNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEG 376
>gb|AAB01381.1| (L13761) dihydrolipoamide dehydrogenase [Homo sapiens]
Length = 511
Score = 71.8 bits (173), Expect = 1e-11
Identities = 89/355 (25%), Positives = 158/355 (44%), Gaps = 65/355 (18%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGF--------GIHYFK 54
DV VIG GP G AAIKA +LG + I++N+ LGG C++ G HY+
Sbjct: 43 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG---TCLNVGCIPSKALLNNSHYY- 98
Query: 55 EELTGPEFAYK-------LMNRLRDVEVRTSA---------------RVVEIINYSDIEK 92
G +FA + +N + +E +++A +VV + Y I
Sbjct: 99 HMAHGTDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITG 158
Query: 93 RLKVI---SPSGIEEIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGI 149
+ +V + G + I K I+ A G+ E F GIT D + + G A +L +
Sbjct: 159 KNQVTATKADGGTQVIDTKNILIATGS-EVTPFP-GITIDEDTIVSSTG-ALSLKKV--- 212
Query: 150 MPGREILIVGSGDVGLIMARRFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYLSH 209
+++++G+G +G+ + + GA V AV E + + GG+ ++ I +F
Sbjct: 213 --PEKMVVIGAGVIGVELGSVWQRLGADVTAV-EFLGHVGGVGIDMEISKNF-------Q 262
Query: 210 KVVEIRGKGRVQRVKIV--------KVDENLREIPGTEFWV-DVDTVIISAGLIPNVKL- 259
++++ +G K+ K+D ++ G + V D +++ G P K
Sbjct: 263 RILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNL 322
Query: 260 -LTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEG 313
L ++G+ +DP P VN R +T +P I+ G+ + L ++G + EG
Sbjct: 323 GLEELGIELDPRGRIP-VNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEG 376
>emb|CAB57297.1| (AJ243598) NADH oxidase [Sulfolobus solfataricus]
Length = 332
Score = 71.8 bits (173), Expect = 1e-11
Identities = 87/304 (28%), Positives = 136/304 (44%), Gaps = 39/304 (12%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
YD+ VIGGGP G+ A + +LID D LGG L ++P I Y L G +
Sbjct: 4 YDIVVIGGGPVGLFGTFYAGLRDMKTLLIDAQDELGGQLVS-LYPE-KIVYDVGGLAGIQ 61
Query: 62 FAYKLMNRL--------RDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYA 113
AY+L RL D++V A ++E N + I + + KTI A
Sbjct: 62 -AYELAQRLIEQAKMFGPDIKVNELADMIEKTNDN------MWIVKTDKATYKTKTIFIA 114
Query: 114 AGARERHAFEIGITGD---RVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARR 170
AG + +G G+ G++ + + G+ +LIVG GD A
Sbjct: 115 AGIGKIVPSRLGAKGEIEYENRGVYYTVRRKKDFE------GKRVLIVGGGD----SAVD 164
Query: 171 FALEGARVKAVIELMPYPGGL-ARNVMILNDFNIP-LYLSHKVVEIRGKGRVQRVKIVKV 228
+AL A V + L+ L A + F + +Y+ H++ E++G G I+
Sbjct: 165 WALTLAPVAKSVTLIHRRDQLRAHERSVKELFRVANVYVWHELKEVKGDGNKVTQAII-F 223
Query: 229 DENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIF 288
D +E E +DVD+VIIS G ++ + K GV + +VN R+ET +PG++
Sbjct: 224 DNRTKE----EKVLDVDSVIISIGYKGDLGNIPKWGVTM--KGRDIVVNGRMETNLPGVY 277
Query: 289 VAGN 292
G+
Sbjct: 278 AGGD 281
>gb|AAF21029.1|AF208523_2 (AF208523) HcnB [Pseudomonas aeruginosa]
Length = 464
Score = 71.8 bits (173), Expect = 1e-11
Identities = 77/316 (24%), Positives = 132/316 (41%), Gaps = 43/316 (13%)
Query: 6 VIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQ-CIHPGFGIHYFKEELTGPEFAY 64
++GGG AGMAAAI+ G+ +L DE GG++ + + G Y T
Sbjct: 7 IVGGGSAGMAAAIELARRGVPCVLFDEASRPGGVVYRGPLRAGVDPAYLGARYT------ 60
Query: 65 KLMNRLR--------DVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGA 116
+++ +LR +++R ++RVV D ++ + + + E+ ++ A G
Sbjct: 61 RMLEKLRRDFSACAGHIDLRLNSRVVG----GDGQRLMVLDEAERLHEVEYSHLLLATGC 116
Query: 117 RERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGA 176
ER + G + G+ G Q + + P + LI GSG + ++A + G
Sbjct: 117 HER---SVRFPGWTLPGVMLLGGLQLQIKSGVVKPLGDTLIAGSGPLLPLVACQLHAAGV 173
Query: 177 RVKAVIELMPYPGGLARNVMILND-----------------FNIPLYLSHKVVEIRGKGR 219
RV V E + G +AR + L + IPL+ VVE G G
Sbjct: 174 RVAGVYEACAF-GRMARESLALLNKPQLFLDGLSMLGYLKLNGIPLHYGWGVVEASGDGE 232
Query: 220 VQRVKIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPI---V 276
+ V + DE R V T+ + G IP +L ++G+ S G +
Sbjct: 233 LTEVTVAPYDEEWRPDLENARPVKASTLAVGYGFIPRTQLSQQLGLEHGFSDDGYLRAEC 292
Query: 277 NDRLETTVPGIFVAGN 292
N +++ P I +AG+
Sbjct: 293 NVWQQSSQPHIHLAGD 308
>gb|AAF34795.1|AF228639_1 (AF228639) lipoamide dehydrogenase precursor [Arabidopsis thaliana]
Length = 497
Score = 71.8 bits (173), Expect = 1e-11
Identities = 91/362 (25%), Positives = 151/362 (41%), Gaps = 59/362 (16%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPG--------FGIHYFK 54
DV +IGGGP G AAIKA +LGL I++ LGG C++ G H +
Sbjct: 35 DVVIIGGGPGGYVAAIKASQLGLKTTCIEKRGALGG---TCLNVGCIPSKALLHSSHMYH 91
Query: 55 E----------ELTGPEFAYKLMNRLRDVEVRTSARVVEII----NYSDIEKRLKVISPS 100
E +++ E M +D V+ R +E + + ++ K ISP+
Sbjct: 92 EAKHSFANHGIKVSSVEVDLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPN 151
Query: 101 ---------GIEEIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMP 151
G ++ K II A G+ + GIT D + + G A +L ++
Sbjct: 152 EVSVETIDGGNTIVKGKHIIVATGSDVKSL--PGITIDEKKIVSSTG-ALSLSEV----- 203
Query: 152 GREILIVGSGDVGLIMARRFALEGARVKAVI---ELMPYPGGLARNVM--ILNDFNIPLY 206
++++++G+G +GL M + G+ V V +++P G R L +
Sbjct: 204 PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFM 263
Query: 207 LSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVK--LLTKVG 264
L KVV + ++ + + G + ++ D V++SAG P L K+G
Sbjct: 264 LKTKVVSVDSSSDGVKLTVEPAE------GGEQSILEADVVLVSAGRTPFTSGLDLEKIG 317
Query: 265 VAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAE---GAKEFIDND 321
V D G +VNDR + VPG++ G+ + L E G E G +D D
Sbjct: 318 VETD-KAGRILVNDRFLSNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYD 376
Query: 322 GI 323
+
Sbjct: 377 KV 378
>gb|AAF79529.1|AC023673_17 (AC023673) F21D18.28 [Arabidopsis thaliana]
Length = 505
Score = 71.8 bits (173), Expect = 1e-11
Identities = 91/362 (25%), Positives = 151/362 (41%), Gaps = 59/362 (16%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPG--------FGIHYFK 54
DV +IGGGP G AAIKA +LGL I++ LGG C++ G H +
Sbjct: 43 DVVIIGGGPGGYVAAIKASQLGLKTTCIEKRGALGG---TCLNVGCIPSKALLHSSHMYH 99
Query: 55 E----------ELTGPEFAYKLMNRLRDVEVRTSARVVEII----NYSDIEKRLKVISPS 100
E +++ E M +D V+ R +E + + ++ K ISP+
Sbjct: 100 EAKHSFANHGIKVSSVEVDLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPN 159
Query: 101 ---------GIEEIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMP 151
G ++ K II A G+ + GIT D + + G A +L ++
Sbjct: 160 EVSVETIDGGNTIVKGKHIIVATGSDVKSL--PGITIDEKKIVSSTG-ALSLSEV----- 211
Query: 152 GREILIVGSGDVGLIMARRFALEGARVKAVI---ELMPYPGGLARNVM--ILNDFNIPLY 206
++++++G+G +GL M + G+ V V +++P G R L +
Sbjct: 212 PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFM 271
Query: 207 LSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVK--LLTKVG 264
L KVV + ++ + + G + ++ D V++SAG P L K+G
Sbjct: 272 LKTKVVSVDSSSDGVKLTVEPAE------GGEQSILEADVVLVSAGRTPFTSGLDLEKIG 325
Query: 265 VAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAE---GAKEFIDND 321
V D G +VNDR + VPG++ G+ + L E G E G +D D
Sbjct: 326 VETD-KAGRILVNDRFLSNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYD 384
Query: 322 GI 323
+
Sbjct: 385 KV 386
>pir||G83370 hydrogen cyanide synthase HcnB PA2194 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948216|gb|AAG05582.1|AE004646_3 (AE004646) hydrogen
cyanide synthase HcnB [Pseudomonas aeruginosa]
Length = 464
Score = 71.8 bits (173), Expect = 1e-11
Identities = 77/316 (24%), Positives = 132/316 (41%), Gaps = 43/316 (13%)
Query: 6 VIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQ-CIHPGFGIHYFKEELTGPEFAY 64
++GGG AGMAAAI+ G+ +L DE GG++ + + G Y T
Sbjct: 7 IVGGGSAGMAAAIELARRGVPCVLFDEASRPGGVVYRGPLRAGVDPAYLGARYT------ 60
Query: 65 KLMNRLR--------DVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGA 116
+++ +LR +++R ++RVV D ++ + + + E+ ++ A G
Sbjct: 61 RMLEKLRRDFSACAGHIDLRLNSRVVG----GDGQRLMVLDEAERLHEVEYSHLLLATGC 116
Query: 117 RERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGA 176
ER + G + G+ G Q + + P + LI GSG + ++A + G
Sbjct: 117 HER---SVPFPGWTLPGVMLLGGLQLQIKSGVVKPLGDTLIAGSGPLLPLVACQLHAAGV 173
Query: 177 RVKAVIELMPYPGGLARNVMILND-----------------FNIPLYLSHKVVEIRGKGR 219
RV V E + G +AR + L + IPL+ VVE G G
Sbjct: 174 RVAGVYEACAF-GRMARESLALLNKPQLFLDGLSMLGYLKLNGIPLHYGWGVVEASGDGE 232
Query: 220 VQRVKIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPI---V 276
+ V + DE R V T+ + G IP +L ++G+ S G +
Sbjct: 233 LTEVTVAPYDEEWRPDLENARPVKASTLAVGYGFIPRTQLSQQLGLEHGFSDDGYLRAEC 292
Query: 277 NDRLETTVPGIFVAGN 292
N +++ P I +AG+
Sbjct: 293 NVWQQSSQPHIHLAGD 308
>gb|AAG21579.1|AC051631_2 (AC051631) lipoamide dehydrogenase, putative; 44693-46402
[Arabidopsis thaliana]
Length = 507
Score = 71.8 bits (173), Expect = 1e-11
Identities = 91/362 (25%), Positives = 151/362 (41%), Gaps = 59/362 (16%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPG--------FGIHYFK 54
DV +IGGGP G AAIKA +LGL I++ LGG C++ G H +
Sbjct: 45 DVVIIGGGPGGYVAAIKASQLGLKTTCIEKRGALGG---TCLNVGCIPSKALLHSSHMYH 101
Query: 55 E----------ELTGPEFAYKLMNRLRDVEVRTSARVVEII----NYSDIEKRLKVISPS 100
E +++ E M +D V+ R +E + + ++ K ISP+
Sbjct: 102 EAKHSFANHGIKVSSVEVDLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPN 161
Query: 101 ---------GIEEIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMP 151
G ++ K II A G+ + GIT D + + G A +L ++
Sbjct: 162 EVSVETIDGGNTIVKGKHIIVATGSDVKSL--PGITIDEKKIVSSTG-ALSLSEV----- 213
Query: 152 GREILIVGSGDVGLIMARRFALEGARVKAVI---ELMPYPGGLARNVM--ILNDFNIPLY 206
++++++G+G +GL M + G+ V V +++P G R L +
Sbjct: 214 PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFM 273
Query: 207 LSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVK--LLTKVG 264
L KVV + ++ + + G + ++ D V++SAG P L K+G
Sbjct: 274 LKTKVVSVDSSSDGVKLTVEPAE------GGEQSILEADVVLVSAGRTPFTSGLDLEKIG 327
Query: 265 VAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAE---GAKEFIDND 321
V D G +VNDR + VPG++ G+ + L E G E G +D D
Sbjct: 328 VETD-KAGRILVNDRFLSNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYD 386
Query: 322 GI 323
+
Sbjct: 387 KV 388
>sp|P09623|DLDH_PIG DIHYDROLIPOAMIDE DEHYDROGENASE, MITOCHONDRIAL PRECURSOR
>gi|66122|pir||DEPGLP dihydrolipoamide dehydrogenase (EC
1.8.1.4) precursor - pig >gi|164539|gb|AAA31069.1|
(J03489) lipoamide dehydrogenase precursor [Sus scrofa]
Length = 509
Score = 71.4 bits (172), Expect = 2e-11
Identities = 87/355 (24%), Positives = 158/355 (44%), Gaps = 65/355 (18%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGF--------GIHYFK 54
DV VIG GP G AAIKA +LG + I++N+ LGG C++ G HY+
Sbjct: 43 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG---TCLNVGCIPSKALLNNSHYY- 98
Query: 55 EELTGPEFAYK-------LMNRLRDVEVRTSA---------------RVVEIINYSDIEK 92
G +FA + +N + +E +++A +VV + Y I
Sbjct: 99 HMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITG 158
Query: 93 RLKVI---SPSGIEEIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGI 149
+ +V + E I K I+ A G+ E F GIT D + + G A +L +
Sbjct: 159 KNQVTATKADGSTEVINTKNILIATGS-EVTPFP-GITIDEDTVVSSTG-ALSLKKV--- 212
Query: 150 MPGREILIVGSGDVGLIMARRFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYLSH 209
+++++G+G +G+ + + GA V AV EL+ + GG+ ++ + +F
Sbjct: 213 --PEKMVVIGAGVIGVELGSVWQRLGADVTAV-ELLGHVGGIGIDMEVSKNF-------Q 262
Query: 210 KVVEIRGKGRVQRVKIV--------KVDENLREIPGTEFWV-DVDTVIISAGLIPNVKL- 259
++++ +G K++ +D ++ G + V D +++ G P +
Sbjct: 263 RILQKQGFKFKLNTKVIGATKKSDGNIDVSIEAASGGKAEVITCDVLLVCIGRRPFTQNL 322
Query: 260 -LTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEG 313
L ++G+ +DP P VN R +T +P I+ G+ + L ++G + EG
Sbjct: 323 GLEELGIELDPRGRIP-VNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEG 376
>gb|AAA35764.1| (J03620) dihydrolipoamide dehydrogenase precursor [Homo sapiens]
Length = 509
Score = 71.4 bits (172), Expect = 2e-11
Identities = 89/355 (25%), Positives = 158/355 (44%), Gaps = 65/355 (18%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGF--------GIHYFK 54
DV VIG GP G AAIKA +LG + I++N+ LGG C++ G HY+
Sbjct: 43 DVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG---TCLNVGCIPSKALLNNSHYY- 98
Query: 55 EELTGPEFAYK-------LMNRLRDVEVRTSA---------------RVVEIINYSDIEK 92
G +FA + +N + +E +++A +VV + Y I
Sbjct: 99 HMAHGKDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYRKITG 158
Query: 93 RLKVI---SPSGIEEIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGI 149
+ +V + G + I K I+ A G+ E F GIT D + + G A +L +
Sbjct: 159 KNQVTATKADGGTQVIDTKNILIATGS-EVTPFP-GITIDEDTIVSSTG-ALSLKKV--- 212
Query: 150 MPGREILIVGSGDVGLIMARRFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYLSH 209
+++++G+G +G+ + + GA V AV E + + GG+ ++ I +F
Sbjct: 213 --PEKMVVIGAGVIGVELGSVWQRLGADVTAV-EFLGHVGGVGIDMEISKNF-------Q 262
Query: 210 KVVEIRGKGRVQRVKIV--------KVDENLREIPGTEFWV-DVDTVIISAGLIPNVKL- 259
++++ +G K+ K+D ++ G + V D +++ G P K
Sbjct: 263 RILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNL 322
Query: 260 -LTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEG 313
L ++G+ +DP P VN R +T +P I+ G+ + L ++G + EG
Sbjct: 323 GLEELGIELDPRGRIP-VNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEG 376
>pir||E69194 thioredoxin reductase (NADPH) (EC 1.6.4.5) - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621795|gb|AAB85213.1| (AE000850) thioredoxin
reductase [Methanobacterium thermoautotrophicum]
Length = 303
Score = 71.4 bits (172), Expect = 2e-11
Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 35/298 (11%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDY--LGGILPQC-IHPGFGIHYFKEELT 58
YD+ VIG GPAG+ A I G SV+++D+ LG +P +PGF E +
Sbjct: 5 YDMIVIGAGPAGLTAGIYGGRQGSSVLMLDKGPAGGLGLEVPMMENYPGF------EMIA 58
Query: 59 GPEFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARE 118
G K+ + V A + E+ +IEK + + A II+A G++
Sbjct: 59 GMSLVTKMKKQATAV-----AELREMEEVKEIEKGDVFTVKTSRDTYTASAIIFATGSKH 113
Query: 119 RHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARV 178
R ++G+ G+ + G + GR++L+VG G+ A + A+ +
Sbjct: 114 R---QLGVPGEN--DLLGRGVCYCATCDGPLYKGRKVLMVGGGN----SAAQEAVFLKNI 164
Query: 179 KAVIELMPYPGGLARNVMI---LNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREI 235
+ ++ L + + L + IP+ + V EI G RV+ V I +
Sbjct: 165 GCDVSIVHRRDELRADKYLQDKLREMEIPVIWNSVVKEIGGDERVEEVII------HNRV 218
Query: 236 PGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLE-TTVPGIFVAGN 292
G + + VD V I+ G P +L +GV +D GG I+ D+ + T VP ++ AG+
Sbjct: 219 TGRDETLKVDGVFIAIGEEPLNQLAVDLGVEVD--KGGYIITDKFQRTNVPLVYAAGD 274
>pir||H71171 probable NADH oxidase - Pyrococcus horikoshii
>gi|3256978|dbj|BAA29661.1| (AP000002) 445aa long
hypothetical NADH oxidase [Pyrococcus horikoshii]
Length = 445
Score = 71.4 bits (172), Expect = 2e-11
Identities = 73/303 (24%), Positives = 140/303 (46%), Gaps = 42/303 (13%)
Query: 4 VAVIGGGPAGMAAAIKARELG--LSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
V +IGGG AGM+AA + + L V + + +++ H GI Y E L+ P+
Sbjct: 9 VVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVS-------HAPCGIPYVVEGLSTPD 61
Query: 62 ----FAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGAR 117
+ ++ + R +++ +A V+E+ ++V G + +++A GA
Sbjct: 62 KLMYYPPEVFIKKRGIDLHLNAEVIEVDT-----GYVRVRENGGEKSYEWDYLVFANGAS 116
Query: 118 ERHAFEIGITGDRVAGIFTAG---EAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALE 174
+ I G + G+FTA +A + + ++I+G G +G+ MA FA +
Sbjct: 117 PQVP---AIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQ 173
Query: 175 GARVKAVI--ELMPYPGGLARNVMILND---FNIPLYLSHKVVEIRGKGRVQRVKIVKVD 229
G V ++ E + IL + ++ L L ++I G+ RV++V +
Sbjct: 174 GKNVTMIVRGERVLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERVEKV-VTDAG 232
Query: 230 ENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFV 289
E E+ VI++ G+ PN++L ++GV I TG N++++T+V ++
Sbjct: 233 EYKAEL-----------VILATGIKPNIELAKQLGVRIG-ETGAIWTNEKMQTSVENVYA 280
Query: 290 AGN 292
AG+
Sbjct: 281 AGD 283
>sp|P50970|DLDH_ZYMMO DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE AND
2-OXOGLUTARATE DEHYDROGENASES COMPLEXES)
>gi|1747421|emb|CAA57734.1| (X82291) dihydrolipoamide
dehydrogenase [Zymomonas mobilis]
>gi|2995393|emb|CAA63810.1| (X93605) dihydrolipoamide
dehydrogenase [Zymomonas mobilis]
Length = 466
Score = 71.0 bits (171), Expect = 2e-11
Identities = 93/355 (26%), Positives = 161/355 (45%), Gaps = 72/355 (20%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPG-------------- 47
+D+ V+GGGP G AAI+A +L L V L+ E +LGGI C++ G
Sbjct: 5 FDLIVLGGGPGGYVAAIRAAQLNLKVALV-ERVHLGGI---CLNWGCIPTKSLLRSAEVY 60
Query: 48 --------FGIHYFKEELTGPEFAY-KLMNRLRDVEVRTSARVVEIINYSDIE------- 91
+G+ FK P+F K++ R R+V R ++ V ++ + +E
Sbjct: 61 HEMQNAEAYGLTSFK-----PDFDLDKIIARSREVAARLASGVKTLLRKNKVEVISGVGQ 115
Query: 92 ----KRLKVISPSGIEEI-RAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDI 146
++++V + G E+I AK II A GAR R + G + A +
Sbjct: 116 LTGNQQMRVETTEGEEKILEAKDIIIATGARARQLPNVHSDGKHIWTYHHALKPPA---- 171
Query: 147 YGIMPGREILIVGSGDVGLIMARRFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLY 206
MP +++L++GSG +G+ A +A GA V +++E P ++ + D + Y
Sbjct: 172 ---MP-KKLLVIGSGAIGIEFASLYADFGAEV-SIVEHAP-------QILPMEDAEVSAY 219
Query: 207 LSHKVVEIRGKGRVQRVKIVKV---DENL-REIPGTEFWVDVDT---VIISAGLIPNVKL 259
++ K + RG + + + + DE + EI G + V + I++ G++ NV+
Sbjct: 220 VA-KAFKKRGIRILTQSALQNLTPDDEGVTAEIAGADGKVTKERFSHAIVAIGVVANVEN 278
Query: 260 --LTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAE 312
L K+G+ +D G V+ T V ++ G+ L QG +AAE
Sbjct: 279 IGLDKLGIKLD--RGFIAVDGFGRTNVDHVWAIGDVAGAPCLAHKASHQGVIAAE 331
>gi|11498007 NADH oxidase (noxA-2) [Archaeoglobus fulgidus]
>gi|7447164|pir||C69299 NADH oxidase (noxA-2) homolog -
Archaeoglobus fulgidus >gi|2650234|gb|AAB90838.1|
(AE001077) NADH oxidase (noxA-2) [Archaeoglobus
fulgidus]
Length = 436
Score = 71.0 bits (171), Expect = 2e-11
Identities = 75/296 (25%), Positives = 134/296 (44%), Gaps = 31/296 (10%)
Query: 4 VAVIGGGPAGMAAA--IKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
V VIGGG AGM+AA +KA + V + +E +++ H GI Y E L+ P
Sbjct: 3 VVVIGGGAAGMSAASRVKALQPEWEVTVFEETNFVS-------HAPCGIPYVVEGLSDPS 55
Query: 62 ----FAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGAR 117
+ + R +++ +A+VVE + ++VI + ++ A GA
Sbjct: 56 HLMYYPPEFFREKRGIDLHINAKVVEA-----GDGFVRVIEDGQEKTYEWDKLVIATGAL 110
Query: 118 ERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGAR 177
+ G+ + V + +A L + + ++IVG+G VG+ MA A G +
Sbjct: 111 PKTPPFEGLELENVFTVRHPVQAAELRE--AVEKAENVVIVGAGYVGVEMAEAAAARGKK 168
Query: 178 VKAVIELMPYP-GGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIP 236
V V+E + P L R+V L + HK+ E ++V+ + D +R++
Sbjct: 169 V-TVVEFLDQPLPNLDRDVADL--------VKHKLEEKVNLRLGEKVEAFEGDGAVRKVV 219
Query: 237 GTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGN 292
+ D VI++ G+ N + ++G I TG + R++T+V +F AG+
Sbjct: 220 TDKGEYPADVVIVATGVKANTAIAEQIGCKIG-ETGAIWTDSRMQTSVENVFAAGD 274
>emb|CAA11546.1| (AJ223781) thioredoxin reductase [Staphylococcus aureus]
Length = 311
Score = 71.0 bits (171), Expect = 2e-11
Identities = 86/334 (25%), Positives = 142/334 (41%), Gaps = 48/334 (14%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIH----PGFGIHYFKEEL 57
+D+A+IG GPAGM AA+ A L ++I E GG + PGF E +
Sbjct: 6 FDIAIIGAGPAGMTAAVYASRANLKTVMI-ERGIPGGQMANTEEVENFPGF------EMI 58
Query: 58 TGPEFAYKLMNRLRDVEVRTSARVVEIINYSDIEK-----RLKVISPSGIEEIRAKTIIY 112
TGP+ + K+ + + + Y DI+ KVI+ G +E+ AK +I
Sbjct: 59 TGPDLSTKMFEHAK--------KFGAVYQYGDIKSVEDKGEYKVIN-FGNKELTAKAVII 109
Query: 113 AAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGL---IMAR 169
A GA + +IG+ G++ G G + + + + ++G GD +
Sbjct: 110 ATGAGYK---KIGVPGEQELG--GRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLT 164
Query: 170 RFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGK-GRVQRVKIVKV 228
+FA + V EL + ++ ND I SH + I K G+V V +
Sbjct: 165 KFADKVTIVHRRDELRAQ--RILQDRAFKND-KIDFIWSHTLKSINEKDGKVGSVTLTST 221
Query: 229 DENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIF 288
+ G+E + D V I G+ P +G+ D G + D + T+VPGIF
Sbjct: 222 KD------GSEETHEADGVFIYIGMKPLTAPFKDLGITND--VGYIVTKDDMTTSVPGIF 273
Query: 289 VAGNA--LVINDLVDYVVEQGELAAEGAKEFIDN 320
AG+ + +V G +AA+ +I++
Sbjct: 274 AAGDVRDKGLRQIVT-ATGDGSIAAQSTSGYIEH 306
>pir||D72382 hypothetical protein TM0395 - Thermotoga maritima (strain MSB8)
>gi|4980899|gb|AAD35480.1|AE001719_6 (AE001719) NADH
oxidase, putative [Thermotoga maritima]
Length = 425
Score = 71.0 bits (171), Expect = 2e-11
Identities = 78/313 (24%), Positives = 143/313 (44%), Gaps = 49/313 (15%)
Query: 6 VIGGGPAGMAAAIKARELGLS--VILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEFA 63
++G GPAG+ A RE+ ++LI Y+G P + ++T +
Sbjct: 5 IVGSGPAGLNAIEAIREVDKEGEILLITAEKYVGYSRPLITY------LLGRKVTEEKMY 58
Query: 64 YKLMNRLRD--VEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERHA 121
Y+ + LR+ V+++ + RV ++I + V++ SG EEIR ++ A G +
Sbjct: 59 YRTEDYLREMRVDIKPATRVEKVI-----PEEKTVVTDSG-EEIRYDKLLIATGGKPFVP 112
Query: 122 FEIGITGDRVAGIFTAGEAQTLMDIY-GIMPGREILIVGSGDVGLIMARRFALEGARVKA 180
G+TG + FT E + ++ Y +E +++G G +GL +A
Sbjct: 113 NIEGLTGKKGVFTFTTWEDEEKVEKYIEENDVKEAVVLGGGLIGL----------KTTEA 162
Query: 181 VIELMPYPGGLARNVMILNDFNIPLYLSHKVVEI-------RGKGRVQRVKIVKV--DEN 231
++EL G+ ++ L D + + K EI G + +VKV D+
Sbjct: 163 LMEL-----GVKVTIVELADRILSVTFDRKASEIITEALKKEGCSVITNDTVVKVNGDDT 217
Query: 232 LREI---PGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIF 288
+ + G E + ++I+ G+ PNV+ L G+ I+ G +VN+++ET V G++
Sbjct: 218 VSSVVLKSGKE--IPTKLLVIAIGVKPNVEFLKDSGIEINR---GIVVNEKMETNVEGVY 272
Query: 289 VAGNALVINDLVD 301
AG+ DL+D
Sbjct: 273 AAGDCTEFYDLID 285
>gb|AAD52148.1|AF129406_2 (AF129406) alkyl hydroperoxide reductase subunit F [Bacteroides
fragilis]
Length = 516
Score = 71.0 bits (171), Expect = 2e-11
Identities = 81/328 (24%), Positives = 143/328 (42%), Gaps = 39/328 (11%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
YDV V GGGPAG AAAI + GL+V +I E +GG + + + G TG +
Sbjct: 212 YDVIVAGGGPAGSAAAIYSARKGLNVAVIAER--IGGQVKETV--GIENLISVPSTTGSQ 267
Query: 62 FAYKLMNRLRDVEVRTSARVVEIINYSDIEK-----RLKVISPSGIEEIRAKTIIYAAGA 116
A L + S ++++ + IEK + KV++ G E A +I A GA
Sbjct: 268 LADNLKTHM-------SQYPIDLLEHRQIEKIELDGKDKVLTAKGGERFSAPAVIVATGA 320
Query: 117 RERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGA 176
R ++ + G+ A G A G+++ +VG G+ G+ A++ A
Sbjct: 321 SWR---KLNVPGE--AEYIGRGVAFCPHCDGPFYKGKQVAVVGGGNSGI----EAAIDLA 371
Query: 177 RVKAVIELMPYPGGLARNVMILNDF----NIPLYLSHKVVEIRGKGRVQRVKIVKVDENL 232
+ + + ++ + L + ++ N+ + + + E+ G G +V ++V +
Sbjct: 372 GICSKVTVLEFMDELKADQVLQEKLKSLPNVEVLVHSQTTEVVGNG--DKVTGIRVKDRK 429
Query: 233 REIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVND-RLETTVPGIFVAG 291
E E + +D + + GL+ N + V ++ + G IV D T VPGI+ AG
Sbjct: 430 TE---EERVISLDGIFVQIGLVANSGIFRDV---VEVNRPGEIVIDAHCRTNVPGIYAAG 483
Query: 292 NALVINDLVDYVVEQGELAAEGAKEFID 319
+ + ++ GE A F D
Sbjct: 484 DVSTV-PYKQIIIAMGEGAKAALAAFED 510
>gb|AAK42391.1| Thioredoxin reductase (trxB-1) [Sulfolobus solfataricus]
Length = 332
Score = 70.6 bits (170), Expect = 3e-11
Identities = 84/303 (27%), Positives = 133/303 (43%), Gaps = 37/303 (12%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
YD+ VIGGGP G+ A + +LID D LGG L ++P I Y L G +
Sbjct: 4 YDIVVIGGGPVGLFGTFYAGLRDMKTLLIDAQDELGGQLVS-LYPE-KIVYDVGGLAGIQ 61
Query: 62 FAYKLMNRL--------RDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYA 113
AY+L RL D++V A ++E N + I + + KTI A
Sbjct: 62 -AYELAQRLIEQAKMFGPDIKVNELADMIEKTNDN------MWIVKTDKATYKTKTIFIA 114
Query: 114 AGARERHAFEIGITGD---RVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARR 170
AG + +G G+ G++ + + G+ +LIVG GD + A
Sbjct: 115 AGIGKIVPSRLGAKGEIEYENRGVYYTVRRKKDFE------GKRVLIVGGGDSAVDWALT 168
Query: 171 FALEGARVKAVIELMPYPGGLARNVMILNDFNIP-LYLSHKVVEIRGKGRVQRVKIVKVD 229
A K+V + A + F + +Y+ H++ E++G G I+ D
Sbjct: 169 LA---PVAKSVTLIHRRDQFRAHERSVKELFRVANVYVWHELKEVKGDGNKVTQAII-FD 224
Query: 230 ENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFV 289
+E E +DVD+VIIS G ++ + K GV + +VN R+ET +PG++
Sbjct: 225 NRTKE----EKVLDVDSVIISIGYKGDLGNIPKWGVTM--KGRDIVVNGRMETNLPGVYA 278
Query: 290 AGN 292
G+
Sbjct: 279 GGD 281
>pir||D71200 probable glutamate synthase small chain - Pyrococcus horikoshii
>gi|3258312|dbj|BAA30995.1| (AP000007) 476aa long
hypothetical glutamate synthase small chain [Pyrococcus
horikoshii]
Length = 476
Score = 70.6 bits (170), Expect = 3e-11
Identities = 92/343 (26%), Positives = 147/343 (42%), Gaps = 56/343 (16%)
Query: 4 VAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEFA 63
VAVIG GPAG+ A + ++G V + + GG+L +GI PEF
Sbjct: 157 VAVIGAGPAGLTCAAELAKMGYDVTIYEALHEPGGVL------AYGI---------PEF- 200
Query: 64 YKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERHAFE 123
+L + E++ + + I I R I P ++E A I AG +
Sbjct: 201 -RLPKEILRKELKKLSILGVKIKTDHIVGRTVTI-PELLKEYDAIFIGTGAGTPKL---- 254
Query: 124 IGITGDRVAGIFTAGEAQT---LMDIY-------GIMPGREILIVGSGDVGLIMARRFAL 173
+ I G + GI++A E T LM Y I+ G+ ++++G+G+ + AR
Sbjct: 255 LKIPGINLNGIYSANEFLTRINLMKAYKFPEYDTPIIVGKRVIVIGAGNTAMDAARSALR 314
Query: 174 EGARVKAVIELMPYPGG------LARNVMILNDFNIPLYLSHKVVEIRG--KGRVQRVKI 225
GA V ++ Y G V + + VE G GRV+ VK
Sbjct: 315 LGAEV-----IIAYRRGEEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDENGRVKAVKF 369
Query: 226 VKV-------DENLREIPGTEFWVDV--DTVIISAGLIPNVKLLTKVGVAIDPSTGGPI- 275
K+ R+I GT +V V DTV+I+ G PN +++ K + G I
Sbjct: 370 EKMKPLEERDSRGKRKIIGTGEYVTVETDTVVIAIGQTPN-RIIWKTTPGLKVRENGTIV 428
Query: 276 VNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEGAKEFI 318
V++ L T++PG+F G+A+ V + G AA+ E++
Sbjct: 429 VDENLMTSIPGVFAGGDAIRGEATVILAMGDGRKAAKAIHEYL 471
>sp|P75531|TRXB_MYCPN THIOREDOXIN REDUCTASE (TRXR) >gi|2146661|pir||S73917 thioredoxin
reductase (NADPH) (EC 1.6.4.5) - Mycoplasma pneumoniae
(strain ATCC 29342) >gi|1674293|gb|AAB96239.1|
(AE000058) thioredoxin reductase [Mycoplasma pneumoniae]
>gi|2231181|gb|AAC45451.1| (U51988) thioredoxin
reductase K04_orf315 [Mycoplasma pneumoniae]
Length = 315
Score = 69.9 bits (168), Expect = 5e-11
Identities = 71/301 (23%), Positives = 142/301 (46%), Gaps = 36/301 (11%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCI---HPGFGIHYFKEEL 57
+YDVA++G GPAG+AA I + L++ +I+ + G ++ I +PG+ + +
Sbjct: 15 IYDVAIVGAGPAGIAAGIYGKRANLNLAIIEGSTPGGKVVKTNIVENYPGY------KSI 68
Query: 58 TGPEFAYKLMNRLRDVE-VRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGA 116
TGP+ ++ N L D+E A ++++ +D ++ + AKT+IYA G
Sbjct: 69 TGPDLGLEMYNHLIDLEPTFFYANLIKLDKAAD----TFILYLDDKTVVFAKTVIYATGM 124
Query: 117 RERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGA 176
ER ++G+ + + G + + + + + +VG G+ A + AL A
Sbjct: 125 LER---KLGVA--KEDHFYGKGISYCAICDGSLYKDQVVGVVGGGN----SAIQEALYLA 175
Query: 177 RVKAVIELMPYPGGLARNVMILNDF----NIPLYLSHKVVEIRGKGRVQRVKIVK-VDEN 231
+ + L+ G + LN N+ +L++ V E+ G + + + +D +
Sbjct: 176 SMAKTVHLIHRREGFRADETALNKLRNLPNVVFHLNYTVKELLGNNTLNGIVLQNTLDHS 235
Query: 232 LREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAG 291
++I D++ V G K + + + +DP G I N+++ET++ G+F AG
Sbjct: 236 TKQI-------DLNCVFPYIGFESITKPVEHLNLKLDPQ-GFLITNEQMETSLKGLFAAG 287
Query: 292 N 292
+
Sbjct: 288 D 288
>pir||D35156 thioredoxin reductase (NADPH) (EC 1.6.4.5) - Eubacterium
acidaminophilum
Length = 315
Score = 69.9 bits (168), Expect = 5e-11
Identities = 82/328 (25%), Positives = 145/328 (44%), Gaps = 30/328 (9%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGP 60
+YD+A+IG GPAG+AAA+ + I+I+ G I+ H E TGP
Sbjct: 4 VYDLAIIGSGPAGLAAALYGARAKMKTIMIEGQKVGGQIV--ITHEVANYPGSVREATGP 61
Query: 61 EFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERH 120
++ + + + +V++ I D++ ++KVI E +AK++I A GA R
Sbjct: 62 SLIERMEEQANEF---GAEKVMDKIVDVDLDGKIKVIKGEK-AEYKAKSVILATGAAPRL 117
Query: 121 A---FEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGAR 177
A E +TG V+ T +A D+ E+ +VG GD + A A +
Sbjct: 118 AGCPGEQELTGKGVSYCATC-DADFFEDM-------EVFVVGGGDTAVEEAMYLAKFARK 169
Query: 178 VKAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPG 237
V V + + + + + EI+G G V+ V +NL
Sbjct: 170 VTIVHRRDELRAAKSIQEKAFKNPKLDFMWNSAIEEIKGDGIVESA----VFKNLVTGET 225
Query: 238 TEFWVDVDT----VIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNA 293
TE++ + + + + G IP + K + +D G I +D ++T V G+F AG+
Sbjct: 226 TEYFANEEDGTFGIFVFIGYIPKSDVF-KGKITLD-DAGYIITDDNMKTNVDGVFAAGDI 283
Query: 294 LV--INDLVDYVVEQGELAAEGAKEFID 319
V + +V + G +AA A+++++
Sbjct: 284 RVKSLRQVVTACAD-GAIAATQAEKYVE 310
>gb|AAK42805.1| Mercuric reductase (Hg(II) reductase) (merA) [Sulfolobus
solfataricus]
Length = 453
Score = 69.9 bits (168), Expect = 5e-11
Identities = 87/346 (25%), Positives = 149/346 (42%), Gaps = 61/346 (17%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGF----------GI 50
M D+ +IG G AG AA I+A ELG+ +++ + +GG C++ G +
Sbjct: 1 MEDLVIIGYGAAGFAALIRANELGIKPVVVGYGE-IGG---TCVNVGCVPSKRMLRIGEL 56
Query: 51 HYFKEELTG----PEFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRL---KVISPSGI- 102
+ + ++ G PEF ++ V + ++IN DI+ ++ SP+ +
Sbjct: 57 YNYSSKVIGKKLFPEFFQAFQDKAEIVNSLRKEKYEDVINSYDIKLKIGKAYFTSPNAVK 116
Query: 103 ---EEIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREI---L 156
E I AK I A G+ I G G +T EA + P + I
Sbjct: 117 VNGEIIEAKKFIIATGSSPNIP---NIKGLTEVGFWTNVEA--------LSPDKTISSLA 165
Query: 157 IVGSGDVGLIMARRFALEGARV-------KAVIELMPYPGGLARNVMILNDFNIPLYLSH 209
I+G + L A+ + G + + + P +N + ND +IP++ +
Sbjct: 166 IIGGRALALEFAQMYKRLGVDTTILQRSGRILPDWEPEISLSVKNYLEEND-SIPIFTNV 224
Query: 210 KVVEIRGKGRVQRVKIVKVDENLREIPGTEFWVDVDTVIISAGLIPNVKL-LTKVGVAID 268
+V E+R KG ++ + E V+ D ++++ G PNV L L G+ ++
Sbjct: 225 RVKEVR-KGNGGKIIVTDKGE-----------VEADEILLATGRKPNVDLNLDAAGIELN 272
Query: 269 PSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAEGA 314
GG VN+ L T+ P +F AG+ + L QG +AAE A
Sbjct: 273 -DKGGIKVNEELRTSNPNVFAAGDVIGGPMLEALAGRQGSIAAENA 317
>gb|AAA19188.1| (U10552) acetoin dehydrogenase [Klebsiella pneumoniae]
Length = 439
Score = 69.9 bits (168), Expect = 5e-11
Identities = 87/350 (24%), Positives = 147/350 (41%), Gaps = 63/350 (18%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
YDV +IGGGP G AAI+A +LGL +L+ E +LGGI C++ +G K L G E
Sbjct: 5 YDVLIIGGGPGGYVAAIRAGQLGLRTVLV-EKQHLGGI---CLN--WGCIPTKALLHGAE 58
Query: 62 FAY--------------------KLMNRLRDVEVRTSARVVEIINYSDIE-----KRLKV 96
A+ KL+ R V + +A V ++ + + RL+
Sbjct: 59 VAHTITHASQLGISVGEVNVDLQKLVQFSRTVSQQLTAGVAYLLKKNGVRVIDGTARLRG 118
Query: 97 ISPSGIE-------EIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGI 149
+E + RA +I A GAR R I G+ + F A + L
Sbjct: 119 KGQITVEDARGEARDYRADHVILATGARPRALPGIAPDGEHIWTYFEALRPKLL------ 172
Query: 150 MPGREILIVGSGDVGLIMARRFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYL-- 207
+ +LI+GSG +G+ A + G +V V LA ++ + D + +
Sbjct: 173 --PKSLLIIGSGAIGVEFASLYNDLGCKVTLV--------ELASQILPVEDAEVSAAVRK 222
Query: 208 --SHKVVEIRGKGRVQRVKIVKVDENLR---EIPGTEFWVDVDTVIISAGLIPNVKLLTK 262
+ ++I + V +V++ D +R G E+ DV+ V+++ G+ PN++ L
Sbjct: 223 SFEKRGIQIHTQTLVTQVQL--TDTGVRCTLNNTGGEYSQDVERVLLAVGVQPNIEDLGL 280
Query: 263 VGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAE 312
+ ++ G + T V G++ G+ L +G L E
Sbjct: 281 ETLGVELDRGFIKTDAACRTNVFGLYAIGDVAGPPCLAHKASHEGVLCVE 330
>pir||JC4793 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Klebsiella pneumoniae
>gi|945058|gb|AAB40885.1| (U30887) dihydrolipoamide
dehydrogenase [Klebsiella pneumoniae]
Length = 465
Score = 69.9 bits (168), Expect = 5e-11
Identities = 87/350 (24%), Positives = 147/350 (41%), Gaps = 63/350 (18%)
Query: 2 YDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPE 61
YDV +IGGGP G AAI+A +LGL +L+ E +LGGI C++ +G K L G E
Sbjct: 5 YDVLIIGGGPGGYVAAIRAGQLGLRTVLV-EKQHLGGI---CLN--WGCIPTKALLHGAE 58
Query: 62 FAY--------------------KLMNRLRDVEVRTSARVVEIINYSDIE-----KRLKV 96
A+ KL+ R V + +A V ++ + + RL+
Sbjct: 59 VAHTITHASQLGISVGEVNVDLQKLVQFSRTVSQQLTAGVAYLLKKNGVRVIDGTARLRG 118
Query: 97 ISPSGIE-------EIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGI 149
+E + RA +I A GAR R I G+ + F A + L
Sbjct: 119 KGQITVEDARGEARDYRADHVILATGARPRALPGIAPDGEHIWTYFEALRPKLL------ 172
Query: 150 MPGREILIVGSGDVGLIMARRFALEGARVKAVIELMPYPGGLARNVMILNDFNIPLYL-- 207
+ +LI+GSG +G+ A + G +V V LA ++ + D + +
Sbjct: 173 --PKSLLIIGSGAIGVEFASLYNDLGCKVTLV--------ELASQILPVEDAEVSAAVRK 222
Query: 208 --SHKVVEIRGKGRVQRVKIVKVDENLR---EIPGTEFWVDVDTVIISAGLIPNVKLLTK 262
+ ++I + V +V++ D +R G E+ DV+ V+++ G+ PN++ L
Sbjct: 223 SFEKRGIQIHTQTLVTQVQL--TDTGVRCTLNNTGGEYSQDVERVLLAVGVQPNIEDLGL 280
Query: 263 VGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAE 312
+ ++ G + T V G++ G+ L +G L E
Sbjct: 281 ETLGVELDRGFIKTDAACRTNVFGLYAIGDVAGPPCLAHKASHEGVLCVE 330
>sp|P50971|TRXB_EUBAC THIOREDOXIN REDUCTASE (TRXR) >gi|1353197|gb|AAB93303.1| (L04500)
thioredoxin reductase [Eubacterium acidaminophilum]
Length = 315
Score = 69.9 bits (168), Expect = 5e-11
Identities = 82/328 (25%), Positives = 145/328 (44%), Gaps = 30/328 (9%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGP 60
+YD+A+IG GPAG+AAA+ + I+I+ G I+ H E TGP
Sbjct: 4 VYDLAIIGSGPAGLAAALYGARAKMKTIMIEGQKVGGQIV--ITHEVANYPGSVREATGP 61
Query: 61 EFAYKLMNRLRDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERH 120
++ + + + +V++ I D++ ++KVI E +AK++I A GA R
Sbjct: 62 SLIERMEEQANEF---GAEKVMDKIVDVDLDGKIKVIKGEK-AEYKAKSVILATGAAPRL 117
Query: 121 A---FEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGAR 177
A E +TG V+ T +A D+ E+ +VG GD + A A +
Sbjct: 118 AGCPGEQELTGKGVSYCATC-DADFFEDM-------EVFVVGGGDTAVEEAMYLAKFARK 169
Query: 178 VKAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPG 237
V V + + + + + EI+G G V+ V +NL
Sbjct: 170 VTIVHRRDELRAAKSIQEKAFKNPKLDFMWNSAIEEIKGDGIVESA----VFKNLVTGET 225
Query: 238 TEFWVDVDT----VIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTVPGIFVAGNA 293
TE++ + + + + G IP + K + +D G I +D ++T V G+F AG+
Sbjct: 226 TEYFANEEDGTFGIFVFIGYIPKSDVF-KGKITLD-DAGYIITDDNMKTNVEGVFAAGDI 283
Query: 294 LV--INDLVDYVVEQGELAAEGAKEFID 319
V + +V + G +AA A+++++
Sbjct: 284 RVKSLRQVVTACAD-GAIAATQAEKYVE 310
>sp|O66790|TRXB_AQUAE THIOREDOXIN REDUCTASE (TRXR) >gi|7427756|pir||B70345 thioredoxin
reductase (NADPH) (EC 1.6.4.5) - Aquifex aeolicus
>gi|2983154|gb|AAC06756.1| (AE000693) thioredoxin
reductase [Aquifex aeolicus]
Length = 323
Score = 69.5 bits (167), Expect = 7e-11
Identities = 91/343 (26%), Positives = 143/343 (41%), Gaps = 54/343 (15%)
Query: 1 MYDVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGI-LPQCI--HPGFGIHYFKEEL 57
+YDV +IG GPAG AAI G +++ + G + + Q I +PG +
Sbjct: 12 VYDVIIIGAGPAGTTAAIYTARAGWKTLVLYRAEADGALGVTQKIENYPG---------V 62
Query: 58 TGPEFAYKLMNRLRDVEVRTSARVVE-IINYSDIEKRLKVISPSGIEEIRAKTIIYAAGA 116
GP Y+L+ +R+ A V + +D+ K + E R KTII A+GA
Sbjct: 63 PGPLSGYELLKIMREQAKSFGAEFVRGKVIATDLNSDPKKVYTIDGREFRGKTIIVASGA 122
Query: 117 RERHAFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMAR---RFA- 172
ER G G+ G + + ++G D + A RFA
Sbjct: 123 MERANKFKGEEEFLGRGVSYCGVCDA-----AFFKDQPVAVIGDDDYAIEEAEFIARFAN 177
Query: 173 -----LEGARVKAVIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVK--- 224
+ G+++KA E++ + L N+ + L H+ +EI G V+ +K
Sbjct: 178 KVFFVVPGSKIKAPPEVIEHFEKLP---------NVEILLRHRPIEIVGDQVVKGIKLKD 228
Query: 225 IVKVDENLREIPGTEFWVDVDTVIISAGLIPNVKLLTKVGVAIDPSTGGPIVNDRLETTV 284
+ K +E L E+ G I G P+V L +G +VN+ + T+V
Sbjct: 229 LEKKEEKLLEVNG--------VFIFLGGTKPSVDFL--MGQVEMTEGDCIVVNEEMMTSV 278
Query: 285 PGIFVAGNALVINDLVDYVVEQGELAAEGAKEFIDNDGIRSRK 327
PG+F AG+ L N++ VV AA G K + D S K
Sbjct: 279 PGVFAAGDVL-CNEVKQAVV----AAAMGCKAALAVDKFLSGK 316
>pir||T06332 ferric leghemoglobin reductase isoenzyme 2 precursor - soybean
>gi|3309269|gb|AAC26053.1| (AF074940) ferric
leghemoglobin reductase-2 precursor [Glycine max]
Length = 500
Score = 69.1 bits (166), Expect = 9e-11
Identities = 91/350 (26%), Positives = 144/350 (41%), Gaps = 60/350 (17%)
Query: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPG--------FGIHYFK 54
DV VIGGGP G AAIKA +LGL I++ LGG C++ G H +
Sbjct: 38 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGTLGG---TCLNVGCIPSKALLHSSHMYH 94
Query: 55 E----------ELTGPEFAYKLMNRLRDVEVRTSARVVE------IINYSDIEKRLKVIS 98
E + + E M +D V + +E +NY ++ K++S
Sbjct: 95 EAKHAFANHGVKFSSVEVDLPAMMAQKDKAVSNLTKGIEGLFKKNKVNY--VKGYGKLVS 152
Query: 99 PS---------GIEEIRAKTIIYAAGARERHAFEIGITGDRVAGIFTAGEAQTLMDIYGI 149
PS G ++ K II A G+ + GIT D + + G A L +I
Sbjct: 153 PSEVSVDTTEGGNTVVKGKHIIIATGSDVKSL--PGITIDEKKVVSSTG-ALALTEI--- 206
Query: 150 MPGREILIVGSGDVGLIMARRFALEGARVKAV---IELMPYPGGLARNVM--ILNDFNIP 204
+ ++++G+G +GL M + G+ + V E++P R L +
Sbjct: 207 --PKRLIVIGAGYIGLEMGSVWGRLGSEITVVEFASEIVPTMDAEVRKQFQRSLEKQGMK 264
Query: 205 LYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEFWVDVDTVIISAGLIP-NVKL-LTK 262
L KVV + G ++ + G + ++ D V++SAG P +L L K
Sbjct: 265 FKLKTKVVGVDTSGDGVKLTLEPA------AGGDQTTLEADVVLVSAGRTPFTAELGLDK 318
Query: 263 VGVAIDPSTGGPIVNDRLETTVPGIFVAGNALVINDLVDYVVEQGELAAE 312
+GV D G +VN+R T V G++ G+ + L E G E
Sbjct: 319 IGVETD-KIGRILVNERFATNVSGVYAIGDVIPGPMLAHKAEEDGVACVE 367
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.144 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150757199
Number of Sequences: 2977
Number of extensions: 6597085
Number of successful extensions: 19328
Number of sequences better than 1.0e-10: 69
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 19141
Number of HSP's gapped (non-prelim): 76
length of query: 407
length of database: 189,106,746
effective HSP length: 55
effective length of query: 352
effective length of database: 156,189,961
effective search space: 54978866272
effective search space used: 54978866272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)