BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0185 (PAB0185) DE:Hypothetical protein
         (115 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75218 hypothetical protein PAB0185 - Pyrococcus abyssi (st...   234  3e-61
pir||G72254 hypothetical protein - Thermotoga maritima (strain M...   108  2e-23

>pir||D75218 hypothetical protein PAB0185 - Pyrococcus abyssi (strain Orsay)
           >gi|5457704|emb|CAB49195.1| (AJ248283) hypothetical
           protein [Pyrococcus abyssi]
           Length = 115
           
 Score =  234 bits (590), Expect = 3e-61
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MKVYRFTCIVCPLSCTIEVEVEGNSVKSVKGYTCPRGKEWAIEEVLHPKRVVMSVVPVEN 60
           MKVYRFTCIVCPLSCTIEVEVEGNSVKSVKGYTCPRGKEWAIEEVLHPKRVVMSVVPVEN
Sbjct: 1   MKVYRFTCIVCPLSCTIEVEVEGNSVKSVKGYTCPRGKEWAIEEVLHPKRVVMSVVPVEN 60

Query: 61  GKLPTVSVKTEKPIPKEKIPELMKFLSTLKLKAPVRIGDVVAEFEGVKIVATREA 115
           GKLPTVSVKTEKPIPKEKIPELMKFLSTLKLKAPVRIGDVVAEFEGVKIVATREA
Sbjct: 61  GKLPTVSVKTEKPIPKEKIPELMKFLSTLKLKAPVRIGDVVAEFEGVKIVATREA 115


>pir||G72254 hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981999|gb|AAD36504.1|AE001795_7 (AE001795)
           hypothetical protein [Thermotoga maritima]
           Length = 138
           
 Score =  108 bits (268), Expect = 2e-23
 Identities = 55/110 (50%), Positives = 74/110 (67%), Gaps = 4/110 (3%)

Query: 8   CIVCPLSCTIEVEV-EGNSVKSVKGYTCPRGKEWAIEEVLHPKRVVMSVVPVENGKLPTV 66
           C+ CP+ C I+VE+ E   +KS+ G  CPRG E+A +E+  PKRVV + + V NG+LP  
Sbjct: 7   CVQCPIGCKIKVELTEDGHIKSITGNRCPRGVEYAKDEIKDPKRVVPTSIRVLNGELPLA 66

Query: 67  SVKTEKPIPKEKIPELMKFLSTLKLKAPVRIGDVVAE---FEGVKIVATR 113
           SVKT+KPIPK  IPELMK +  +K++APV+ GDVV       G  +V TR
Sbjct: 67  SVKTDKPIPKRFIPELMKIVREIKVEAPVKAGDVVLRDLFGTGANLVVTR 116


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.136    0.395 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42335220
Number of Sequences: 2977
Number of extensions: 1642881
Number of successful extensions: 4231
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4228
Number of HSP's gapped (non-prelim): 2
length of query: 115
length of database: 189,106,746
effective HSP length: 53
effective length of query: 62
effective length of database: 157,386,935
effective search space: 9757989970
effective search space used: 9757989970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)