BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0188 (PAB0188) DE:Hypothetical protein
(267 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75219 hypothetical protein PAB0188 - Pyrococcus abyssi (st... 536 e-152
pir||F71203 hypothetical protein PH1898 - Pyrococcus horikoshii ... 456 e-127
gi|11498074 conserved hypothetical transmembrane protein [Archae... 153 2e-36
pir||C69064 conserved hypothetical protein MTH1480 - Methanobact... 151 8e-36
sp|P29085|YFUS_PYRWO HYPOTHETICAL 12.3 KD PROTEIN IN FUS 3'REGIO... 141 1e-32
sp|Q57882|Y440_METJA HYPOTHETICAL PROTEIN MJ0440 >gi|2128325|pir... 140 2e-32
pir||D75200 hypothetical protein PAB0078 - Pyrococcus abyssi (st... 132 3e-30
pir||G71233 hypothetical protein PH0129 - Pyrococcus horikoshii ... 131 1e-29
>pir||B75219 hypothetical protein PAB0188 - Pyrococcus abyssi (strain Orsay)
>gi|5457710|emb|CAB49201.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 267
Score = 536 bits (1367), Expect = e-152
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MLGDFFRKYFVNPIKYNTGYNPVNTLTYAVILGLATILVYKVLKRLRIKIDNAFFRALIP 60
MLGDFFRKYFVNPIKYNTGYNPVNTLTYAVILGLATILVYKVLKRLRIKIDNAFFRALIP
Sbjct: 1 MLGDFFRKYFVNPIKYNTGYNPVNTLTYAVILGLATILVYKVLKRLRIKIDNAFFRALIP 60
Query: 61 YMIFGAFTRALTDAGVFPRTYITVSPGIYFLVFSIAFPALLISHRFFKDWRGVFLSFGWG 120
YMIFGAFTRALTDAGVFPRTYITVSPGIYFLVFSIAFPALLISHRFFKDWRGVFLSFGWG
Sbjct: 61 YMIFGAFTRALTDAGVFPRTYITVSPGIYFLVFSIAFPALLISHRFFKDWRGVFLSFGWG 120
Query: 121 LVLVDVAALSANIGKVSFRLEVLKYFIPFVIIAELVIYLLSRRVYLIRKNSYLFYVHFYD 180
LVLVDVAALSANIGKVSFRLEVLKYFIPFVIIAELVIYLLSRRVYLIRKNSYLFYVHFYD
Sbjct: 121 LVLVDVAALSANIGKVSFRLEVLKYFIPFVIIAELVIYLLSRRVYLIRKNSYLFYVHFYD 180
Query: 181 ATTTFVGVDFMGYWEQHVVPRLLIGLTGTAAVMYVLKFSILFIALWIMEKLEKEGEDKEL 240
ATTTFVGVDFMGYWEQHVVPRLLIGLTGTAAVMYVLKFSILFIALWIMEKLEKEGEDKEL
Sbjct: 181 ATTTFVGVDFMGYWEQHVVPRLLIGLTGTAAVMYVLKFSILFIALWIMEKLEKEGEDKEL 240
Query: 241 LDFIRMVIFILGFAPGTRNLLRMLMGV 267
LDFIRMVIFILGFAPGTRNLLRMLMGV
Sbjct: 241 LDFIRMVIFILGFAPGTRNLLRMLMGV 267
>pir||F71203 hypothetical protein PH1898 - Pyrococcus horikoshii
>gi|3258338|dbj|BAA31021.1| (AP000007) 267aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 267
Score = 456 bits (1160), Expect = e-127
Identities = 220/267 (82%), Positives = 244/267 (90%)
Query: 1 MLGDFFRKYFVNPIKYNTGYNPVNTLTYAVILGLATILVYKVLKRLRIKIDNAFFRALIP 60
ML DFF KYFVNPIKYNTGYNPVNTLTYA+ILG+ATILVYK LK+L+IKIDNAFFRAL+P
Sbjct: 1 MLRDFFEKYFVNPIKYNTGYNPVNTLTYAIILGIATILVYKGLKKLKIKIDNAFFRALVP 60
Query: 61 YMIFGAFTRALTDAGVFPRTYITVSPGIYFLVFSIAFPALLISHRFFKDWRGVFLSFGWG 120
YMIFGAFTRALTDA VFPRTYITVSPGIYFLV IA PALLI ++FFKDWR VF FGWG
Sbjct: 61 YMIFGAFTRALTDASVFPRTYITVSPGIYFLVSLIATPALLIPYKFFKDWRRVFSLFGWG 120
Query: 121 LVLVDVAALSANIGKVSFRLEVLKYFIPFVIIAELVIYLLSRRVYLIRKNSYLFYVHFYD 180
LVL+DVAAL N+ KV+F +VLKYFIPFV IAE+VIYLL++++ ++R NSYLFYVHFYD
Sbjct: 121 LVLIDVAALLVNLQKVTFNFQVLKYFIPFVTIAEVVIYLLTKKLSIVRDNSYLFYVHFYD 180
Query: 181 ATTTFVGVDFMGYWEQHVVPRLLIGLTGTAAVMYVLKFSILFIALWIMEKLEKEGEDKEL 240
ATTTFVGVDFMGYWEQHVVPR LIGLTGTAAVMYVLKF +L+ ALWIM KLE+EGE++EL
Sbjct: 181 ATTTFVGVDFMGYWEQHVVPRFLIGLTGTAAVMYVLKFVVLYTALWIMVKLEEEGEEEEL 240
Query: 241 LDFIRMVIFILGFAPGTRNLLRMLMGV 267
LDFI+MVIFILGFAPGTRNLLRMLMGV
Sbjct: 241 LDFIKMVIFILGFAPGTRNLLRMLMGV 267
>gi|11498074 conserved hypothetical transmembrane protein [Archaeoglobus
fulgidus] >gi|7483261|pir||F69307 conserved hypothetical
transmembrane protein AF0462 - Archaeoglobus fulgidus
>gi|2650167|gb|AAB90775.1| (AE001073) conserved
hypothetical transmembrane protein [Archaeoglobus
fulgidus]
Length = 276
Score = 153 bits (383), Expect = 2e-36
Identities = 92/268 (34%), Positives = 151/268 (56%), Gaps = 10/268 (3%)
Query: 2 LGDFFRKYFVNPIKYNTGYNPVNTLTYAVILGLATILVYKVLKRLRIKIDNAFFRALIPY 61
L +F ++Y+++ I Y GYN VNTLT+A IL +A +Y+ L + R+ D F A IPY
Sbjct: 15 LWEFIKEYYIDSIVYKEGYNIVNTLTWAAILIVAVYALYRFLGK-RLDFDEKFVYANIPY 73
Query: 62 MIFGAFTRALTDAGVF--PRTYITVSPGIYFLVFSIAFPALLISHRFF-KDWRGVFLSFG 118
++ G+ R + DAG P +YI ++P IY L+F+IAFP LL+S RF+ + + V+ G
Sbjct: 74 ILLGSSVRVVEDAGFLTPPISYIFMTPFIYILIFAIAFPTLLLSLRFYGEKYYRVYAVVG 133
Query: 119 WGLVLVDVAALSANIGKVSFRLEVLKYFIPFVIIAELVIYLLSRRVYLIRKNSYLFYVHF 178
+ + L AN+ V++ V+ + V Y +S + + + H
Sbjct: 134 LVPAVGVLILLFANLPVVNW--WVIPAGVGLAAAFTAVFYAISLKPMKNELSLLTMFSHM 191
Query: 179 YDATTTFVGVDFMGYWEQHVVPRLLIGLTGTAAVMYVLKFSILFIALWIMEKLEKEGEDK 238
D TF G+ ++GYWE HV+PR LI G + + KF + + L++++ E EDK
Sbjct: 192 LDGFETFFGISYLGYWELHVLPRYLIDKFGPIS-LPAAKFLVFYAILYLLDTSE---EDK 247
Query: 239 ELLDFIRMVIFILGFAPGTRNLLRMLMG 266
+L ++++ V+ +LG APG R+ +RM+ G
Sbjct: 248 KLRNYVKFVLVVLGLAPGLRDGIRMMFG 275
>pir||C69064 conserved hypothetical protein MTH1480 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622595|gb|AAB85955.1| (AE000908) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 263
Score = 151 bits (378), Expect = 8e-36
Identities = 94/254 (37%), Positives = 142/254 (55%), Gaps = 14/254 (5%)
Query: 19 GYNPVNTLTYAVILGLATILVYKVLKRLRIKIDNAFFRALIPYMIFGAFTRALTDAGVFP 78
GY P+NT+ + ++LG+A +++ ++ + L+ K L+P++ G+ RAL D G++P
Sbjct: 19 GYTPLNTVVFGIVLGIAVLIILRMFRWLK-KDPGELLVPLLPFIFLGSGARALVDNGIYP 77
Query: 79 RTYITVSPGIYFLVFSIAFPALLISHRF--FKDWRGVFLSFGWGLVLVDVAALSA-NIGK 135
T++ V+PGIY LV L+ + + + W L F G VL +S +I
Sbjct: 78 LTHLLVTPGIYILVGLTTIATLIAAVKLEETRGWDYRKLIFATGSVLAAPNLISIRHIDP 137
Query: 136 VSFRLEVLKYFIPFVIIAELVIYLLSRRVYLIR--KNSYLFYVHFYDATTTFVGVDFMGY 193
V F L VL F F Y LS R +R N + Y H +DA++T+V VD+ GY
Sbjct: 138 VPF-LSVLGVFSVF----SAAFYALSLRWEFLRGRMNLPVIYAHLFDASSTYVAVDWYGY 192
Query: 194 WEQHVVPRLLIGLTGTAAVMYVLKFSILFIALWIMEKLEKEGEDKELLDFIRMVIFILGF 253
EQHV+P L GLTGTA VM+ LK +++ AL+ +++ + D E L ++VIFILG
Sbjct: 193 IEQHVLPSALTGLTGTAMVMFPLKMAVILTALYAIDRYVESDMDSEAL---KLVIFILGL 249
Query: 254 APGTRNLLRMLMGV 267
APG RN L + M V
Sbjct: 250 APGLRNFLSLSMAV 263
>sp|P29085|YFUS_PYRWO HYPOTHETICAL 12.3 KD PROTEIN IN FUS 3'REGION
>gi|99236|pir||S23865 hypothetical protein (fus 3'
region) - Pyrococcus woesei >gi|45951|emb|CAA47642.1|
(X67205) ORF [Pyrococcus woesei]
Length = 106
Score = 141 bits (351), Expect = 1e-32
Identities = 67/86 (77%), Positives = 80/86 (92%), Gaps = 1/86 (1%)
Query: 1 MLGDFFRKYFVNPIKYNTGYNPVNTLTYAVILGLATILVYKVLKRLRIKIDNAFFRALIP 60
M+ +FF+KYF++PIKYNTGYNPVNTL YA+ILG+AT+LVYKVLKRL+I+I+NAFFRALIP
Sbjct: 4 MIREFFQKYFIDPIKYNTGYNPVNTLVYAIILGIATLLVYKVLKRLKIEINNAFFRALIP 63
Query: 61 YMIFGAFTRALTDAGVFPRTYITVSP 86
YMIFGAFTRALTDAGVF R I++ P
Sbjct: 64 YMIFGAFTRALTDAGVF-RELISLFP 88
>sp|Q57882|Y440_METJA HYPOTHETICAL PROTEIN MJ0440 >gi|2128325|pir||H64354 hypothetical
protein MJ0440 - Methanococcus jannaschii
>gi|1591144|gb|AAB98427.1| (U67495) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 299
Score = 140 bits (350), Expect = 2e-32
Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 5/265 (1%)
Query: 4 DFFRKYFVNPIKYNTGYNPVNTLTYAVILGLATILVYKVLKRLRIKIDNAFFRALIPYMI 63
+F KY++ P + TGYN V +TY +IL LA L YK L++L I ID F I + +
Sbjct: 39 NFIYKYYIEPAEKGTGYNIVQEITYGIILALALYLFYKALRKLNINIDEKFAIPGIVFTV 98
Query: 64 FGAFTRALTDAGVFPRTYITVSPGIYFLVFSIAFPALLISHRFFKD-WRGVFLSFGWGLV 122
A RAL D G R+++T++PGI FL+ +L + FK+ + G L+
Sbjct: 99 LIALMRALVDCGYIERSFLTITPGIVFLIGGFFILTILTTGLVFKEKYYKASAVIGLILL 158
Query: 123 LVDVAALSANIGKVSFRLEVLKYFIPFVIIAELVIYLLSRRVYLIRKNSYLFYVHFYDAT 182
L + +I + L V F + + + L + + + Y+ DA+
Sbjct: 159 LYFLFVFLQHITHLEAILYVGILVGIFYYLVKFLDKTLKLNIIQSKIDDYVVIGQLIDAS 218
Query: 183 TTFVGVDFMGYWEQHVVPRLLIGLTGTAAVMYVLKFSILFIALWIMEKLEKEGEDKELLD 242
T +G+ GYWEQH +PR L+ G A + K I+ +AL+I L KE ED+ + +
Sbjct: 219 ATTIGIGVYGYWEQHPIPRFLMETFGVYAFI-PFKLLIILLALYI---LNKEVEDENIKN 274
Query: 243 FIRMVIFILGFAPGTRNLLRMLMGV 267
I++ I LG APG R+L R +MGV
Sbjct: 275 IIKLCIMALGLAPGLRDLFRTVMGV 299
>pir||D75200 hypothetical protein PAB0078 - Pyrococcus abyssi (strain Orsay)
>gi|5457560|emb|CAB49051.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 263
Score = 132 bits (330), Expect = 3e-30
Identities = 84/268 (31%), Positives = 136/268 (50%), Gaps = 18/268 (6%)
Query: 5 FFRKYFVNPIKYNTGYNPVNTLTYAVILGLATILVYK-VLKRLRIKIDNAFFRALIPYMI 63
F +YF+ P+ GYNP+NT+ YA+I G A I YK V+K L+IK+D F A+ P +I
Sbjct: 6 FLWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYVIKPLKIKVDERLFLAVTPMVI 65
Query: 64 FGAFTRALTDAGVFPRTYITVSPGIYFLVFSIAFPALLISHRFFKDWRGVFLSFGWGLVL 123
FG+ RAL D G+ ++PGI+F F + PAL + + + L+ WG +L
Sbjct: 66 FGSTVRALVDGGILKPNPWILTPGIFFTAFFLILPALFLDVKLKLYPK---LTIAWGTLL 122
Query: 124 VDVA----ALSANIGKVSFRLEVLKYFIPFVIIAELVIYLLSRRVYLIRKNSYLFYVHFY 179
A ++A K + L +L + FV++ R+YL Y H++
Sbjct: 123 AGYANYLLIINAKCWK-PYELTLLHTLVSFVVVFAFYKVRPFERLYL-----YPVLAHYF 176
Query: 180 DATTTFVGVDFMGYWEQHVVPRLLIGLTGTAAVMYVLKFSILFIALWIMEKLEKEGEDKE 239
D +T V + F Y E H V R L+ G A Y ILF+ +I+ + +G+++
Sbjct: 177 DIASTVVAIHFYSYMEVHWVERHLVNAFG-AYAYYPWITVILFLVYYILRNMVPDGDER- 234
Query: 240 LLDFIRMVIFILGFAPGTRNLLRMLMGV 267
++ + I+ILG P R+ +M++ +
Sbjct: 235 --NYWYLAIYILGLGPAIRDPAQMVLQI 260
>pir||G71233 hypothetical protein PH0129 - Pyrococcus horikoshii
>gi|3256515|dbj|BAA29198.1| (AP000001) 267aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 267
Score = 131 bits (326), Expect = 1e-29
Identities = 84/272 (30%), Positives = 139/272 (50%), Gaps = 20/272 (7%)
Query: 2 LGDFFRKYFVNPIKYNTGYNPVNTLTYAVILGLATILVYK-VLKRLRIKIDNAFFRALIP 60
L FF +YF+ P+ GYNP+NT+ YA+I G A I YK ++K L+IK+D F A+ P
Sbjct: 7 LHQFFWEYFIRPMYTREGYNPINTVVYALIFGFAVIYTYKYIIKPLKIKVDERLFLAVTP 66
Query: 61 YMIFGAFTRALTDAGVFPRTYITVSPGIYFLVFSIAFPALL--ISHRFFKDWRGVFLSFG 118
+IFG+ RAL D GV ++PGI+F F + P L + + + L+
Sbjct: 67 MVIFGSTIRALVDGGVLAPNPWILTPGIFFTAFFLILPVLFADVKLKLYPK-----LTIA 121
Query: 119 WGLVLVDVA--ALSANIG-KVSFRLEVLKYFIPFVIIAELVIYLLSRRVYLIRKNSYLFY 175
WG +L A L N+ + L +L + F ++ + ++YL Y
Sbjct: 122 WGSLLAIYANYLLIINVKCWKPYELTLLHALVSFAVVLAYYKFKPFEKLYL-----YPTL 176
Query: 176 VHFYDATTTFVGVDFMGYWEQHVVPRLLIGLTGTAAVMYVLKFSILFIALWIMEKLEKEG 235
H++D +T V + F GY E H V + L+G+ G A Y IL I +++++L +
Sbjct: 177 AHYFDIASTVVAIHFYGYREVHWVEKYLVGMFG-AYAYYPWITIILIIVYYVLKELVLDP 235
Query: 236 EDKELLDFIRMVIFILGFAPGTRNLLRMLMGV 267
E++ + + ++ILG PG R+ +M++ +
Sbjct: 236 EERY---YWYLAVYILGLGPGIRDPAQMVLQI 264
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.334 0.150 0.459
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95024411
Number of Sequences: 2977
Number of extensions: 3732803
Number of successful extensions: 13931
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13909
Number of HSP's gapped (non-prelim): 8
length of query: 267
length of database: 189,106,746
effective HSP length: 48
effective length of query: 219
effective length of database: 160,379,370
effective search space: 35123082030
effective search space used: 35123082030
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.5 bits)
S2: 164 (68.3 bits)