BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0190 (PAB0190) DE:ATP-dependent RNA helicase, EIF-4A FAMILY
(752 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75219 ATP-dependent RNA helicase, eif-4a family PAB0190 - ... 1465 0.0
pir||D71203 probable ATP-dependent RNA helicase - Pyrococcus hor... 1146 0.0
gi|11499053 ATP-dependent RNA helicase, putative [Archaeoglobus ... 699 0.0
pir||E69055 ATP-dependent RNA helicase, eIF-4A family - Methanob... 611 e-173
pir||H64487 eIF-4A family probable ATP-dependent RNA helicase ho... 608 e-173
sp|Q58900|YF05_METJA PUTATIVE ATP-DEPENDENT RNA HELICASE MJ1505 ... 607 e-172
gb|AAG20456.1| (AE005118) ATP-dependent RNA helicase homolog eIF... 548 e-155
emb|CAC12619.1| (AL445067) RNA helicase (RIG-I) related protein ... 342 6e-93
gb|AAC62691.1| (AF083071) ATP-dependent RNA helicase [Cenarchaeu... 303 6e-81
pir||T31323 ATP-dependent RNA helicase, eIF-4A family - Cenarcha... 294 2e-78
pir||T39190 probable ATP-dependent RNA helicase - fission yeast ... 242 1e-62
gb|AAF55897.1| (AE003735) CG7922 gene product [Drosophila melano... 235 2e-60
gb|AAF79368.1|AC007887_27 (AC007887) F15O4.40 [Arabidopsis thali... 205 2e-51
gi|6322192 Mph1p [Saccharomyces cerevisiae] >gi|731905|sp|P40562... 192 1e-47
pir||C71203 probable DNA excision repair protein - Pyrococcus ho... 157 4e-37
gi|7657516 RNA helicase [Homo sapiens] >gi|4405795|gb|AAD19826.1... 155 2e-36
pir||C72622 hypothetical protein APE1436 - Aeropyrum pernix (str... 153 8e-36
gi|11545922 melanoma differentiation associated protein-5 [Homo ... 143 9e-33
gb|AAK41026.1| RNA helicase (ATP dependent)/eIF4A (eiF4A) [Sulfo... 141 3e-32
emb|CAB57574.1| (Y18930) ATP-dependent RNA helicase, eIF-4A fami... 141 3e-32
gb|AAG09428.1|AF181119_1 (AF181119) RNA helicase [Sus scrofa] 132 1e-29
dbj|BAB13818.1| (AK021416) unnamed protein product [Homo sapiens] 131 2e-29
gi|11499994 DNA repair protein, putative [Archaeoglobus fulgidus... 119 1e-25
sp|Q09884|YC9A_SCHPO HYPOTHETICAL HELICASE C584.10C IN CHROMOSOM... 113 6e-24
pir||T32534 hypothetical protein F15B10.2 - Caenorhabditis elega... 111 2e-23
gi|4885217 excision repair cross-complementing rodent repair def... 98 5e-19
sp|Q92889|XPF_HUMAN DNA-REPAIR PROTEIN COMPLEMENTING XP-F CELL (... 98 5e-19
gb|AAB07689.1| (U64315) DNA repair endonuclease subunit [Homo sa... 95 3e-18
dbj|BAA89229.1| (AB017635) ERCC4 [Cricetulus griseus] 91 5e-17
gb|AAC03240.1| (AC004155) ERCC4_MOUSE [Mus musculus] 89 2e-16
gi|7657064 excision repair cross-complementing rodent repair def... 89 2e-16
pir||T46312 hypothetical protein DKFZp434J1111.1 - human (fragme... 87 5e-16
gi|11526480 RNA helicase [Homo sapiens] 86 1e-15
gb|AAF01274.1|AF160500_1 (AF160500) repair endonuclease [Arabido... 83 1e-14
dbj|BAA28847.1| (AB009461) MUS38 [Neurospora crassa] 82 2e-14
gb|AAF81910.1|AF277377_1 (AF277377) 5' repair endonuclease [Arab... 80 7e-14
gb|AAF45938.1| (AE003430) mei-9 gene product [Drosophila melanog... 77 6e-13
sp|Q24087|MEI9_DROME MEI-9 PROTEIN (MEIOTIC-9 PROTEIN) >gi|21336... 75 2e-12
emb|CAB70217.1| (AL033535) Similarity to Yeast DNA repair protei... 75 3e-12
pir||T18568 hypothetical protein VF13D12L.2 - Caenorhabditis ele... 75 3e-12
dbj|BAB13422.1| (AB046816) KIAA1596 protein [Homo sapiens] 75 4e-12
dbj|BAA31233.1| (D89592) rhlE [Vibrio alginolyticus] 72 3e-11
pir||B72707 hypothetical protein APE1073 - Aeropyrum pernix (str... 72 3e-11
sp|P42305|DEAD_BACSU COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG (ATP-... 71 3e-11
gi|6325235 UV endonuclease; Rad1p [Saccharomyces cerevisiae] >gi... 70 7e-11
>pir||D75219 ATP-dependent RNA helicase, eif-4a family PAB0190 - Pyrococcus
abyssi (strain Orsay) >gi|5457712|emb|CAB49203.1|
(AJ248283) ATP-dependent RNA helicase, EIF-4A FAMILY
[Pyrococcus abyssi]
Length = 752
Score = 1465 bits (3751), Expect = 0.0
Identities = 752/752 (100%), Positives = 752/752 (100%)
Query: 1 MNTMYLRKELLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGGKVLM 60
MNTMYLRKELLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGGKVLM
Sbjct: 1 MNTMYLRKELLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGGKVLM 60
Query: 61 LAPTKPLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLL 120
LAPTKPLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLL
Sbjct: 61 LAPTKPLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLL 120
Query: 121 TGKINLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVL 180
TGKINLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVL
Sbjct: 121 TGKINLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVL 180
Query: 181 RNLGIEHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAG 240
RNLGIEHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAG
Sbjct: 181 RNLGIEHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAG 240
Query: 241 LIESASADLPKKEILRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSAL 300
LIESASADLPKKEILRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSAL
Sbjct: 241 LIESASADLPKKEILRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSAL 300
Query: 301 RVYLKKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLS 360
RVYLKKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLS
Sbjct: 301 RVYLKKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLS 360
Query: 361 KKENSKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFAR 420
KKENSKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFAR
Sbjct: 361 KKENSKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFAR 420
Query: 421 GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTR 480
GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTR
Sbjct: 421 GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTR 480
Query: 481 DEAYYWSSKHKERQMRETIRMVSQAIKREKQLSLESYVKKDTEKEMEREEKEERKGEREG 540
DEAYYWSSKHKERQMRETIRMVSQAIKREKQLSLESYVKKDTEKEMEREEKEERKGEREG
Sbjct: 481 DEAYYWSSKHKERQMRETIRMVSQAIKREKQLSLESYVKKDTEKEMEREEKEERKGEREG 540
Query: 541 VKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRL 600
VKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRL
Sbjct: 541 VKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRL 600
Query: 601 FDQVKRLKDSYPRPVVIVEGQLYGIRNVHPNAIRGAIASIVIDFGVPIIFSSNPEETANY 660
FDQVKRLKDSYPRPVVIVEGQLYGIRNVHPNAIRGAIASIVIDFGVPIIFSSNPEETANY
Sbjct: 601 FDQVKRLKDSYPRPVVIVEGQLYGIRNVHPNAIRGAIASIVIDFGVPIIFSSNPEETANY 660
Query: 661 IFFMARREQEERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRLLKHFGSVERVF 720
IFFMARREQEERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRLLKHFGSVERVF
Sbjct: 661 IFFMARREQEERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRLLKHFGSVERVF 720
Query: 721 TASVPELMKVEGIGEKIAREIRRVITSPYTED 752
TASVPELMKVEGIGEKIAREIRRVITSPYTED
Sbjct: 721 TASVPELMKVEGIGEKIAREIRRVITSPYTED 752
>pir||D71203 probable ATP-dependent RNA helicase - Pyrococcus horikoshii
>gi|3258336|dbj|BAA31019.1| (AP000007) 650aa long
hypothetical ATP-dependent RNA helicase [Pyrococcus
horikoshii]
Length = 650
Score = 1146 bits (2931), Expect = 0.0
Identities = 566/655 (86%), Positives = 626/655 (95%), Gaps = 5/655 (0%)
Query: 1 MNTMYLRKELLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGGKVLM 60
MN MY+RK+LLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRL+KYGGKVLM
Sbjct: 1 MNLMYIRKDLLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLDKYGGKVLM 60
Query: 61 LAPTKPLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLL 120
LAPTKPLVLQHAETFRKFF LPPEKIVALTGE+SP+ERV+AW RAKV+IATPQT+ENDLL
Sbjct: 61 LAPTKPLVLQHAETFRKFFTLPPEKIVALTGEISPNERVRAWARAKVVIATPQTIENDLL 120
Query: 121 TGKINLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVL 180
G+I+LEDV L+IFDEAHRAVGNYAYVYIA+EYL QAKNPHVIGLTASPGS+ EKI+EVL
Sbjct: 121 VGRISLEDVTLIIFDEAHRAVGNYAYVYIAKEYLKQAKNPHVIGLTASPGSTPEKIMEVL 180
Query: 181 RNLGIEHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAG 240
RNLGIEHIEYRSENSPDVKPYVQGIKFEW+KVELP LYKEVRKLLRDMLRDSLKPLAEAG
Sbjct: 181 RNLGIEHIEYRSENSPDVKPYVQGIKFEWVKVELPELYKEVRKLLRDMLRDSLKPLAEAG 240
Query: 241 LIESASADLPKKEILRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSAL 300
L++S SAD+PKKEILRAGQIINEE AKGNHDLRKLLLFHAMALKLHHAIELLETQGLSAL
Sbjct: 241 LLDSTSADIPKKEILRAGQIINEEMAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSAL 300
Query: 301 RVYLKKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLS 360
RVYLK+LYEEAK GSTRASKELFLD+RMKKALALLIQAKELGIDHPKMEVLK L++EQL
Sbjct: 301 RVYLKRLYEEAKAGSTRASKELFLDKRMKKALALLIQAKELGIDHPKMEVLKGLIREQLK 360
Query: 361 KKENSKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFAR 420
+KENSKIIVFTNYRETA+KVVEEL K+GIKA+RFVGQA++ENDRGMSQ+EQKLILD+FAR
Sbjct: 361 RKENSKIIVFTNYRETAKKVVEELMKDGIKARRFVGQASRENDRGMSQKEQKLILDAFAR 420
Query: 421 GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTR 480
EFNVLVATSVGEEGLDVPEVDLV+FYEPVPSAIRSVQRRGRTGRQKPGRVVIL+AQGTR
Sbjct: 421 SEFNVLVATSVGEEGLDVPEVDLVIFYEPVPSAIRSVQRRGRTGRQKPGRVVILMAQGTR 480
Query: 481 DEAYYWSSKHKERQMRETIRMVSQAIKREKQLSLESYVKKDTEKEMEREEKEERKGEREG 540
DEAYYWSS+ KE+ MRETIRMVSQ +++E+QLSLESYVK++ +E++ E+K E G
Sbjct: 481 DEAYYWSSRQKEKIMRETIRMVSQMVRKERQLSLESYVKREVNEEIKEEKK-----ETGG 535
Query: 541 VKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRL 600
+KVV+DSRELRSEVVK+LKTLG+KIEV+TLDVGDYI+S++VAIERKSANDFIQSIIDGRL
Sbjct: 536 IKVVIDSRELRSEVVKKLKTLGIKIEVRTLDVGDYIVSEDVAIERKSANDFIQSIIDGRL 595
Query: 601 FDQVKRLKDSYPRPVVIVEGQLYGIRNVHPNAIRGAIASIVIDFGVPIIFSSNPE 655
FDQVKRLK++YPRPV+I+EGQLYGIRNVHPNAIRGAIASIV+DFGVP+IFSS+ +
Sbjct: 596 FDQVKRLKEAYPRPVIIIEGQLYGIRNVHPNAIRGAIASIVLDFGVPVIFSSSSD 650
>gi|11499053 ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus]
>gi|7428313|pir||A69432 ATP-dependent RNA helicase
homolog - Archaeoglobus fulgidus
>gi|2649107|gb|AAB89786.1| (AE001002) ATP-dependent RNA
helicase, putative [Archaeoglobus fulgidus]
Length = 741
Score = 699 bits (1784), Expect = 0.0
Identities = 370/749 (49%), Positives = 517/749 (68%), Gaps = 28/749 (3%)
Query: 6 LRKELLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGGKVLMLAPTK 65
+++ ++ R+YQ I A +N L+V+PTGLGKT IA ++ RL GKVL LAPTK
Sbjct: 9 IKENTIERRMYQISIAATALTKNTLVVIPTGLGKTTIAALVIASRLLNEDGKVLFLAPTK 68
Query: 66 PLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTGKIN 125
PLV QHA ++ + E+IV+L+GEV P +R + W +A+++++TPQ VENDLL G+I+
Sbjct: 69 PLVEQHARFLKRVLKV--EEIVSLSGEVPPEKRKELWEKARIVVSTPQVVENDLLAGRIS 126
Query: 126 LEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVLRNLGI 185
LEDV+LV+FDEAHRAVGNYAYV+IA+EYL AK P ++ +TASPGS E+I+EV++NLGI
Sbjct: 127 LEDVILVVFDEAHRAVGNYAYVFIAKEYLRTAKKPLILAMTASPGSDPERIMEVIQNLGI 186
Query: 186 EHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAGLIESA 245
E IE R+E DV PYV + EWIKV++P KEV++ L++ ++ K L E +
Sbjct: 187 EAIEVRTEWDSDVAPYVGKKRIEWIKVDIPEEMKEVKERLKECIKIRFKRLRELWI--EV 244
Query: 246 SADLPKKEILRAGQIINEETAKG-NHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYL 304
+ K+++L + + E A + ++ + L A +KL HA+EL+ETQG+ A++ YL
Sbjct: 245 PENSSKRDLLALQEALQAEAASSQSSEIFEALSILAEIMKLQHAVELIETQGVKAVKSYL 304
Query: 305 KKLYEEAKT-GSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKKE 363
+KL EA + G ++A+K + D KKA+ L + K ++HPK+E LKE++KEQ K
Sbjct: 305 RKLVREATSKGGSKAAKSIVGDPIFKKAVIALSKCK---VEHPKLEKLKEILKEQFEKNP 361
Query: 364 NSKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFARGEF 423
+S++IVFTNYR++A +V EL+ AK FVGQA+++ND+GM Q+EQ +D F RG +
Sbjct: 362 DSRVIVFTNYRDSAEMLVNELSPLFPVAK-FVGQASRDNDKGMRQKEQIETIDKFRRGVY 420
Query: 424 NVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEA 483
VLVATSVGEEGLD+P DLVVFYE VPS IR++QR+GRTGR + GR+V+L+ +GTRDEA
Sbjct: 421 KVLVATSVGEEGLDIPSTDLVVFYEAVPSEIRAIQRKGRTGRGREGRIVVLVTKGTRDEA 480
Query: 484 YYWSSKHKERQMRETIRMVSQAIKREKQLSLESYVKKDTEKEMEREEKEERKGEREGVKV 543
YY+SS KER+M + I + + I R KQ S+ YV E G+KV
Sbjct: 481 YYYSSMKKERKMYDKILEIKRIIDR-KQRSIGDYVLP----------------EETGIKV 523
Query: 544 VVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIID-GRLFD 602
+VDSRELRSEVVK L+ +G KIE++ L+V DY++SD VA+ERK+ DF+ SII RLF
Sbjct: 524 IVDSRELRSEVVKHLREIGAKIEIRNLEVADYVVSDRVAVERKTVEDFLNSIIQKERLFS 583
Query: 603 QVKRLKDSYPRPVVIVEGQLYGIRNVHPNAIRGAIASIVIDFGVPIIFSSNPEETANYIF 662
QV RLK +Y RPV+I+EG+ + VHPNA+RGAIAS++IDFG+P++ SSN ETA IF
Sbjct: 584 QVARLKSAYSRPVIIIEGENFYRGGVHPNAVRGAIASLIIDFGIPVLRSSNARETAELIF 643
Query: 663 FMARREQEERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRLLKHFGSVERVFTA 722
MARREQEER+R V K TL + Q IV ++ +V +A+ LL +F ++E + TA
Sbjct: 644 AMARREQEERKRGVVEHTAKTKRTLKDEQEYIVSAISNVGNVIARNLLDYFQTIENIATA 703
Query: 723 SVPELMKVEGIGEKIAREIRRVITSPYTE 751
EL KV +G+KIA+ IRRV+T+PY+E
Sbjct: 704 DEEELAKVPKVGKKIAKRIRRVMTTPYSE 732
>pir||E69055 ATP-dependent RNA helicase, eIF-4A family - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622527|gb|AAB85892.1| (AE000903) ATP-dependent RNA
helicase, eIF-4A family [Methanobacterium
thermoautotrophicum]
Length = 738
Score = 611 bits (1558), Expect = e-173
Identities = 327/749 (43%), Positives = 493/749 (65%), Gaps = 37/749 (4%)
Query: 6 LRKELLQPRLYQELIYAKC-KERNCLIVLPTGLGKTIIAMMIADYRLNKY-GGKVLMLAP 63
++ E ++ R YQ+L+ A ++ N +IV PT LGKT++A+++A RL KY G KVL+L+P
Sbjct: 10 IKPEKIEARTYQQLLAADVIRKGNSMIVAPTALGKTVVAVLVAAERLRKYRGSKVLILSP 69
Query: 64 TKPLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTGK 123
+KPL +QH E+FR+F +LTG + P ER + W ++++I ATPQTVE+D+L G+
Sbjct: 70 SKPLAIQHEESFREFMLAT---CTSLTGSIKPEERKERWIKSQIISATPQTVESDILAGR 126
Query: 124 INLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVLRNL 183
+L DV L++FDE HRAVG+Y+YV++A Y+ A++P ++GLTASPG+ ++KI V NL
Sbjct: 127 YDLRDVSLIVFDECHRAVGSYSYVFLASNYIQNARHPLILGLTASPGADEDKIKTVCENL 186
Query: 184 GIEHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAGLIE 243
+ + ++E PDV+PY++ IK EW+KV + +++R+LLR +L++ LK L G+I+
Sbjct: 187 FMNEVVVKTEGDPDVRPYLKPIKIEWVKVRMTPELEDIRELLRKVLKNRLKMLKNLGVID 246
Query: 244 SASADLPKKEILRAGQIINEETAKGNHDLR---KLLLFHAMALKLHHAIELLETQGLSAL 300
+ S + KK++L+A + A+ R + + A + + HA+ELLETQG+ L
Sbjct: 247 TIS--VGKKDLLKARGRVQNRIARSTSPPRACYRAISLLASCINVEHALELLETQGIRPL 304
Query: 301 RVYLKKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLS 360
YL +L E+ T+A+K L D +A+ L +A G++HPK++ L E++K +L
Sbjct: 305 HQYLLRLKEK----KTKAAKGLLADPDFTRAMHLTRRAMMSGVEHPKLDRLMEILKREL- 359
Query: 361 KKENSKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFAR 420
K + ++IIVFT +R+T ++ + +EGI A +F GQ ++ ++G++Q++Q+ I+ SF
Sbjct: 360 KGDEARIIVFTQFRDTLEEIYQRCKREGINAVKFYGQNSRSGEKGLTQKQQRDIIKSFRM 419
Query: 421 GEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTR 480
G +VL++TSV EEG+D+P VDLVV YEPVPS IR +QRRGRTGR++ GR+V+LI + TR
Sbjct: 420 GNHDVLLSTSVAEEGIDIPSVDLVVMYEPVPSEIRMIQRRGRTGRKRKGRMVVLITEKTR 479
Query: 481 DEAYYWSSKHKERQMRETIRMVSQAIKREKQLSLESYVKKDTEKEMEREEKEERKGEREG 540
DEAYY+SS KER M+E +R S V + ME EG
Sbjct: 480 DEAYYYSSIRKERSMKENLRGGS--------------VNVEVNPIME--------PSGEG 517
Query: 541 VKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRL 600
+ DSRE+ S V++ LK +GV E+K L VGDY IS++ IERK+ DFI SIID RL
Sbjct: 518 PFIYADSREVNSRVLRELKKIGVDFELKPLAVGDYQISEDTIIERKTTQDFIGSIIDKRL 577
Query: 601 FDQVKRLKDSYPRPVVIVEGQLYGIRNVHPNAIRGAIASIVIDFGVPIIFSSNPEETANY 660
+ Q + + ++ RPV+I+EG ++P+A+RGA+A++ +DFG+P+I + + E+TA
Sbjct: 578 YKQAREMVKNFKRPVMIIEGDDLYSGFINPDAVRGALAAVAVDFGIPVIPTRSAEDTAAM 637
Query: 661 IFFMARREQEERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRLLKHFGSVERVF 720
I +A REQ E R ++RVR +KK LTL E+Q IVESLP++ + A+RLL+ FGSVE V
Sbjct: 638 IRRIAIREQREGRPDMRVRTDKKPLTLREKQLFIVESLPNIGSKYAERLLEAFGSVEGVM 697
Query: 721 TASVPELMKVEGIGEKIAREIRRVITSPY 749
AS EL VEGIG K A EIRRVI + +
Sbjct: 698 NASEKELRSVEGIGAKRASEIRRVIEAEF 726
>pir||H64487 eIF-4A family probable ATP-dependent RNA helicase homolog -
Methanococcus jannaschii
Length = 784
Score = 608 bits (1552), Expect = e-173
Identities = 338/800 (42%), Positives = 519/800 (64%), Gaps = 76/800 (9%)
Query: 3 TMYLRKELLQP-----RLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGGK 57
TM++ L++P RLYQ++I A ++ L VL TGLGKT IA+++ L K GK
Sbjct: 6 TMFIEHPLIKPKTLEARLYQQIIAANALKKKTLCVLSTGLGKTAIAILVIAGILTKKDGK 65
Query: 58 VLMLAPTKPLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVEN 117
VL+LAP++PLV QH ++ N+ +KI+ALTG++ P +R + + + K+ IATPQ +EN
Sbjct: 66 VLILAPSRPLVEQHYNRLKQVLNIDEDKIIALTGKIQPKKRAELYKKGKIFIATPQVIEN 125
Query: 118 DLLTGKINLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKIL 177
D++ G+IN+++ +L+I DEAH G++AY ++A+++ ++ H++GLTASPGS +K++
Sbjct: 126 DIIAGRINVDEFILLIADEAHHTTGDHAYAFVAKKFKDKC---HILGLTASPGSDIDKVM 182
Query: 178 EVLRNLGIEHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLA 237
E+ NLGIEH+E R+E+ DVKPY+ +K I+++LP +K KL+ + L++ LK L
Sbjct: 183 EICENLGIEHVEVRTEDDEDVKPYIAKVKLIPIRIDLPNEFKRALKLINEALKERLKILK 242
Query: 238 EAGLIESASADLPKKEILRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGL 297
+AG+I S AD+ K E++ + + ++L K+ + ALKL HA ELLE+QG
Sbjct: 243 DAGVINSI-ADVTKTELIELNNKLFSYDEEVKYELIKVC---SEALKLMHAKELLESQGK 298
Query: 298 SALRVYLKKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKE 357
S Y+ KL + T+++K + D ++++A+ LL+++ ++HPK+ + ++VK
Sbjct: 299 SVFLNYINKLSMQ----RTKSAKSIVNDEKVREAVNLLMKS---DVEHPKLGKVVDMVKN 351
Query: 358 QLSKKENSKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDS 417
L K ++ +II+F YR+T K+V LT+ GIKA RF+GQA KE +GMSQ+EQ ++
Sbjct: 352 ILEKNKDERIIIFAQYRDTVEKIVNLLTQNGIKAIRFIGQANKEG-KGMSQKEQIEAIER 410
Query: 418 FARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQ 477
F + E +VLV+TSV EEG+D+P V+ ++FYEPVPS IR +QRRGR R + G+V +LIA+
Sbjct: 411 FKK-EGSVLVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFIQRRGRAMRGEGGKVYVLIAK 469
Query: 478 GTRDEAYYWSSKHKERQM-----------------------RETIRMVSQAIKREKQLSL 514
GT DEAYY S+ +KER+M +E I+ ++ IK EK++
Sbjct: 470 GTADEAYYRSALYKEREMKRLLKNMCYLLNKRLQKKFEEKSKEEIKEETEEIK-EKEIES 528
Query: 515 ESYVKKDTEKEMER--------------EEKEERKGE-----------REGVKVVVDSRE 549
++ VK++T++E E+ E KE K E ++ +K++VD RE
Sbjct: 529 KTAVKEETKEEEEKTKKPVTILDFIKQIEVKERSKSEEDKIKQEIKIPKKPIKIIVDVRE 588
Query: 550 LRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLFDQVKRLKD 609
+ K L IE+KTL+VGDY++SD V +ERK+A DF+ SIID RLF Q+K LK
Sbjct: 589 --KNMAKLLHNY-ANIELKTLEVGDYVLSDRVVVERKTAEDFVNSIIDKRLFSQLKNLK- 644
Query: 610 SYPRPVVIVEGQLYGIRNVHPNAIRGAIASIVIDFGVPIIFSSNPEETANYIFFMARREQ 669
+P++IVEG+ + +H NA++GAI SI++DFG+PIIF+ N EETA+ + +A +EQ
Sbjct: 645 KVEKPLLIVEGENFS--RLHENALKGAILSIILDFGIPIIFTKNAEETADLLIKIAEKEQ 702
Query: 670 EERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRLLKHFGSVERVFTASVPELMK 729
+ +R V VR K A++L E+Q+ IVESLP V LA+RLLKHF +VE VFTA ELMK
Sbjct: 703 IKEKRTVMVRYGKTAMSLKEQQKFIVESLPDVGGALAERLLKHFKTVENVFTAKEEELMK 762
Query: 730 VEGIGEKIAREIRRVITSPY 749
VEG+G++ A++IR V+T+ Y
Sbjct: 763 VEGVGKERAKKIREVLTAEY 782
>sp|Q58900|YF05_METJA PUTATIVE ATP-DEPENDENT RNA HELICASE MJ1505
>gi|2826423|gb|AAB99518.1| (U67591) ATP dependent RNA
helicase, putative [Methanococcus jannaschii]
Length = 778
Score = 607 bits (1549), Expect = e-172
Identities = 335/792 (42%), Positives = 516/792 (64%), Gaps = 71/792 (8%)
Query: 6 LRKELLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGGKVLMLAPTK 65
++ + L+ RLYQ++I A ++ L VL TGLGKT IA+++ L K GKVL+LAP++
Sbjct: 8 IKPKTLEARLYQQIIAANALKKKTLCVLSTGLGKTAIAILVIAGILTKKDGKVLILAPSR 67
Query: 66 PLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTGKIN 125
PLV QH ++ N+ +KI+ALTG++ P +R + + + K+ IATPQ +END++ G+IN
Sbjct: 68 PLVEQHYNRLKQVLNIDEDKIIALTGKIQPKKRAELYKKGKIFIATPQVIENDIIAGRIN 127
Query: 126 LEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVLRNLGI 185
+++ +L+I DEAH G++AY ++A+++ ++ H++GLTASPGS +K++E+ NLGI
Sbjct: 128 VDEFILLIADEAHHTTGDHAYAFVAKKFKDKC---HILGLTASPGSDIDKVMEICENLGI 184
Query: 186 EHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAGLIESA 245
EH+E R+E+ DVKPY+ +K I+++LP +K KL+ + L++ LK L +AG+I S
Sbjct: 185 EHVEVRTEDDEDVKPYIAKVKLIPIRIDLPNEFKRALKLINEALKERLKILKDAGVINSI 244
Query: 246 SADLPKKEILRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYLK 305
AD+ K E++ + + ++L K+ + ALKL HA ELLE+QG S Y+
Sbjct: 245 -ADVTKTELIELNNKLFSYDEEVKYELIKVC---SEALKLMHAKELLESQGKSVFLNYIN 300
Query: 306 KLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKKENS 365
KL + T+++K + D ++++A+ LL+++ ++HPK+ + ++VK L K ++
Sbjct: 301 KLSMQ----RTKSAKSIVNDEKVREAVNLLMKS---DVEHPKLGKVVDMVKNILEKNKDE 353
Query: 366 KIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFARGEFNV 425
+II+F YR+T K+V LT+ GIKA RF+GQA KE +GMSQ+EQ ++ F + E +V
Sbjct: 354 RIIIFAQYRDTVEKIVNLLTQNGIKAIRFIGQANKEG-KGMSQKEQIEAIERFKK-EGSV 411
Query: 426 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEAYY 485
LV+TSV EEG+D+P V+ ++FYEPVPS IR +QRRGR R + G+V +LIA+GT DEAYY
Sbjct: 412 LVSTSVSEEGIDIPSVNYIIFYEPVPSEIRFIQRRGRAMRGEGGKVYVLIAKGTADEAYY 471
Query: 486 WSSKHKERQM-----------------------RETIRMVSQAIKREKQLSLESYVKKDT 522
S+ +KER+M +E I+ ++ IK EK++ ++ VK++T
Sbjct: 472 RSALYKEREMKRLLKNMCYLLNKRLQKKFEEKSKEEIKEETEEIK-EKEIESKTAVKEET 530
Query: 523 EKEMER--------------EEKEERKGE-----------REGVKVVVDSRELRSEVVKR 557
++E E+ E KE K E ++ +K++VD RE + K
Sbjct: 531 KEEEEKTKKPVTILDFIKQIEVKERSKSEEDKIKQEIKIPKKPIKIIVDVRE--KNMAKL 588
Query: 558 LKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLFDQVKRLKDSYPRPVVI 617
L IE+KTL+VGDY++SD V +ERK+A DF+ SIID RLF Q+K LK +P++I
Sbjct: 589 LHNY-ANIELKTLEVGDYVLSDRVVVERKTAEDFVNSIIDKRLFSQLKNLK-KVEKPLLI 646
Query: 618 VEGQLYGIRNVHPNAIRGAIASIVIDFGVPIIFSSNPEETANYIFFMARREQEERRREVR 677
VEG+ + +H NA++GAI SI++DFG+PIIF+ N EETA+ + +A +EQ + +R V
Sbjct: 647 VEGENFS--RLHENALKGAILSIILDFGIPIIFTKNAEETADLLIKIAEKEQIKEKRTVM 704
Query: 678 VRGEKKALTLAERQRLIVESLPHVSATLAKRLLKHFGSVERVFTASVPELMKVEGIGEKI 737
VR K A++L E+Q+ IVESLP V LA+RLLKHF +VE VFTA ELMKVEG+G++
Sbjct: 705 VRYGKTAMSLKEQQKFIVESLPDVGGALAERLLKHFKTVENVFTAKEEELMKVEGVGKER 764
Query: 738 AREIRRVITSPY 749
A++IR V+T+ Y
Sbjct: 765 AKKIREVLTAEY 776
>gb|AAG20456.1| (AE005118) ATP-dependent RNA helicase homolog eIF-4A; Eif4a
[Halobacterium sp. NRC-1]
Length = 784
Score = 548 bits (1397), Expect = e-155
Identities = 312/773 (40%), Positives = 467/773 (60%), Gaps = 41/773 (5%)
Query: 10 LLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRL-NKYGGKVLMLAPTKPLV 68
+++ R YQ + A ++ + L+ LPTGLGKT +++++ YRL + GG L+LAPTKPLV
Sbjct: 17 VIEARQYQLQLAAAARQGHTLVCLPTGLGKTTVSLLVTAYRLADDAGGTALLLAPTKPLV 76
Query: 69 LQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTGKINLED 128
QHA +R+ +P + +V TGE P +R AW A+V++ATPQ VENDL+ G+I+++D
Sbjct: 77 EQHAGFYREALAIPDDDVVVFTGETRPDDRRAAWTDARVVVATPQVVENDLVGGRIDMDD 136
Query: 129 VVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVLRNLGIEHI 188
VV FDE HRA G+YAY Y+A Y A P V ++ASPG ++ +I V NLG+ ++
Sbjct: 137 VVHCTFDECHRATGDYAYTYVAERYHADAAAPLVTAMSASPGGTEAEIRTVCENLGVGNV 196
Query: 189 EYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAGLIESASAD 248
E +E+ DV + +W +V LP EVR + D++ D L L E G+ +++S D
Sbjct: 197 EVMTEDDADVGEHTHDTDVQWERVTLPEEILEVRDAINDVIEDRLAKLREIGVTKASSPD 256
Query: 249 LPKKEI----LRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYL 304
+ +K++ R Q+I+++ + G + HA +KL A+EL+ETQ + ++R Y
Sbjct: 257 ISQKDLNEIRARLQQLIDDDDSDGYQGMS----VHAEVMKLKRAVELVETQSVESVRRYF 312
Query: 305 KKLYEEAKT-GSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKKE 363
++ A T G+++AS+ L + +K+A+ A+E HPK + L+ E L ++
Sbjct: 313 ERQRNAANTAGASKASQRLVSEPAVKRAMR---TAREFDGLHPKFRQARMLLAETLGIED 369
Query: 364 NSKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFARGEF 423
++IVFT R+TA + L E +RFVGQ + GM+Q EQ+ L F G+F
Sbjct: 370 GDRVIVFTESRDTAEALTAFL-GEHFDTRRFVGQGDADGSDGMTQTEQRETLAEFRNGDF 428
Query: 424 NVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEA 483
VLV+TSV EEGLDVPEVDLV+F+EPVP+AIRSVQR+GRTGRQ GRVV+L+A+ TRDEA
Sbjct: 429 EVLVSTSVAEEGLDVPEVDLVLFFEPVPTAIRSVQRKGRTGRQTAGRVVVLLAEDTRDEA 488
Query: 484 YYWSSKHKERQMRETIR-MVSQAIKREKQL-------SLESYVKKDT----------EKE 525
Y+W S+ +E++M E ++ + +A + E +L +L+ + + E
Sbjct: 489 YFWISRRREQEMTEELQSLKGRADELETELGGDGAQQALDEFGDAEAAGEEPAAPAPEDV 548
Query: 526 MEREEKE----ERKGEREGVKVVVDSRELRSEVVKRL-KTLGVKIEVKTLDVGDYIISDE 580
+ E+ E G E V+VVVD REL S + + L K GV+ ++TL VGDY++SD
Sbjct: 549 SDGEDTEGVAARVDGAGEAVEVVVDQRELDSTIARELSKRDGVETRLETLAVGDYVVSDR 608
Query: 581 VAIERKSANDFIQSII--DGRLFDQVKRLKDSYPRPVVIVE--GQLYGIRNVHPNAIRGA 636
VA+ERKS +DF+ +++ + +F+Q K L Y RPV++VE G LY RNVHPNA+R A
Sbjct: 609 VAVERKSHSDFMDTLLGSERSIFEQAKELARQYTRPVLVVEGDGDLYAERNVHPNAVRSA 668
Query: 637 IASIVIDFGVPIIFSSNPEETANYIFFMARREQEERRREVRVRGEKKALTLAERQRLIVE 696
+AS+ +D+G+ ++ ++ +T I +A REQ R V GEK A T E+Q +V
Sbjct: 669 MASLAVDWGLSVMHTNGEGDTTEMIETIAEREQTTNDRAVSAHGEKAAKTQGEQQEYVVS 728
Query: 697 SLPHVSATLAKRLLKHFGSVERVFTASVPELMKVEGIGEKIAREIRRVITSPY 749
S+ V A+ LL FGSVE V TAS EL +G+G A IR V+ + Y
Sbjct: 729 SITDVGPVTARSLLDTFGSVEAVMTASEDELTAADGVGAVTAERIRGVVGTEY 781
>emb|CAC12619.1| (AL445067) RNA helicase (RIG-I) related protein [Thermoplasma
acidophilum]
Length = 508
Score = 342 bits (869), Expect = 6e-93
Identities = 210/521 (40%), Positives = 311/521 (59%), Gaps = 25/521 (4%)
Query: 10 LLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGGKV--LMLAPTKPL 67
++QPR YQ ++ +N LIV+PTGLGKTIIA M + YG K LM+APTKPL
Sbjct: 2 IIQPREYQLNVFKNSIGQNTLIVMPTGLGKTIIAAMFIE---KFYGEKKRSLMVAPTKPL 58
Query: 68 VLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTGKINLE 127
VLQHA T + +I TGE+ ER W K+ ++TPQ V ND+ +G +++
Sbjct: 59 VLQHARTIADSTGISENEIGVFTGEIDAEERELIWVTKKIFVSTPQVVFNDMRSGILDIT 118
Query: 128 DVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVLRNLGIEH 187
L+IFDEAHRAVGNYAYV IA+EYL K +IGLTASPGSS+EKI E++ NLGI
Sbjct: 119 KFDLIIFDEAHRAVGNYAYVDIAQEYLKYKKKL-IIGLTASPGSSREKIDEIMANLGISK 177
Query: 188 IEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAGLIESASA 247
+ ++E DV+ YV+ I + IK+ P KE+ ++ ++ L+P+ + S
Sbjct: 178 VIAKTEMDEDVRKYVKTIDVKLIKIREPDGTKEIVNMIDAVMSKLLEPVKSSNF----SI 233
Query: 248 DLPKKEILRAGQ-IINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYLKK 306
+K+++ Q +IN +AK + L +L+ A++L + E +ETQG+ YL++
Sbjct: 234 GRSRKDLVATMQKVIN--SAKEDRSLFQLVRRITAAIRLDYLKEYIETQGIDVALHYLEE 291
Query: 307 LYEEAKTGSTRASKELF-LDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKKENS 365
+ + G RA L LD L++ A G +PKME +++ + N+
Sbjct: 292 MEKSQDPGIRRAISMLSSLDEFATLRTKLMLAAD--GYTNPKMEKTLSIMESNVHG--NA 347
Query: 366 KIIVFTNYRETARKVVEELTKEG--IKAKRFVGQATKENDRGMSQREQKLILDSFARGEF 423
+ IVFT+YR T+ +++ + K G +K RF+GQA + +D G+SQ +QK I++ F +
Sbjct: 348 RAIVFTHYRITSDLLMDYIQKNGTSLKPVRFIGQADRGSDEGLSQDQQKKIIEDFKNNVY 407
Query: 424 NVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEA 483
NVL+ATS+ EEGLD+P+ D V+FYE VPS IR +QR+GRTGR + G+V IL+ + +RD A
Sbjct: 408 NVLIATSIAEEGLDIPDTDFVIFYEAVPSEIRYIQRKGRTGRSRNGQVYILVFENSRDMA 467
Query: 484 YYWSSKHKERQMRETIRMVSQAIKREKQLSLESYVKKDTEK 524
YY+SS K +M +TI + R++ S E K D +K
Sbjct: 468 YYYSSIRKVSRMTQTIEDL-----RQESGSDEKEEKSDVQK 503
>gb|AAC62691.1| (AF083071) ATP-dependent RNA helicase [Cenarchaeum symbiosum]
Length = 503
Score = 303 bits (767), Expect = 6e-81
Identities = 186/487 (38%), Positives = 276/487 (56%), Gaps = 27/487 (5%)
Query: 5 YLRKELLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGGKVLMLAPT 64
Y+ ++ R YQ + + NC++VLPTGLGKT +A+ + + L++ G L LAPT
Sbjct: 10 YVEPGAVERRDYQVGLAEQAIRENCIVVLPTGLGKTAVALQVISHYLDE-GRGALFLAPT 68
Query: 65 KPLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTGKI 124
+ LV QH + + + I +TGE + R KAW VI ATP+ ND+ G +
Sbjct: 69 RVLVNQHRQFLGRALTI--SDITLVTGEDTVPRRKKAWG-GSVICATPEITRNDIARGMV 125
Query: 125 NLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVLRNLG 184
LE LV+FDEAHRAVG+YAY IAR +N +IG+TA+ S +EK E++ L
Sbjct: 126 PLEQFGLVVFDEAHRAVGDYAYSAIARAV---GENSRMIGMTATLPSEREKADEIMGTLL 182
Query: 185 IEHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAGLIES 244
+ I R+E+ PDVKPYVQ + EWIKVELP KE++KLL+ L + L G
Sbjct: 183 SKSIAQRTEDDPDVKPYVQETETEWIKVELPPEMKEIQKLLKMALDERYAALKRCGY--- 239
Query: 245 ASADLPKKEILRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYL 304
DL L A + GN K L A+++ +A+ + E G++ +
Sbjct: 240 ---DLGSNRSLSALLRLRMVVLSGNRRAAKPLF---TAIRITYALNIFEAHGVTPFLKFC 293
Query: 305 KKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKKEN 364
++ ++ G +E DR A+A A+ G++HPK+ L+E V+
Sbjct: 294 ERTVKKKGAGVAELFEE---DRNFTGAMARAKAAQAAGMEHPKIPKLEEAVRGA-----K 345
Query: 365 SKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFARGEFN 424
K +VFT+YR++ + +L GI + +G+A ++G+ Q++Q + F G ++
Sbjct: 346 GKALVFTSYRDSVDLIHSKLQAAGINSGILIGKA---GEKGLKQKKQVETVAKFRDGGYD 402
Query: 425 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEAY 484
VLV+T VGEEGLD+ EV+LVVFY+ VPS+IR VQRRGRTGR+ G++V+L+A+GT DEAY
Sbjct: 403 VLVSTRVGEEGLDISEVNLVVFYDNVPSSIRYVQRRGRTGRKDAGKLVVLMAKGTIDEAY 462
Query: 485 YWSSKHK 491
YW + K
Sbjct: 463 YWIGRRK 469
>pir||T31323 ATP-dependent RNA helicase, eIF-4A family - Cenarchaeum symbiosum
>gi|3599409|gb|AAC62714.1| (AF083072) ATP-dependent RNA
helicase [Cenarchaeum symbiosum]
Length = 502
Score = 294 bits (745), Expect = 2e-78
Identities = 182/487 (37%), Positives = 272/487 (55%), Gaps = 27/487 (5%)
Query: 5 YLRKELLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGGKVLMLAPT 64
Y+ ++ R YQ + + NC++VLPTGLGKT +A+ + + L++ G L LAPT
Sbjct: 10 YIEPGAVERRDYQVGLAEQAIRENCIVVLPTGLGKTAVALQVIAHYLDE-GRGALFLAPT 68
Query: 65 KPLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTGKI 124
+ LV QH + + + I +TGE + R KAW VI ATP+ ND+ G +
Sbjct: 69 RVLVNQHRQFLGRALTI--SDITLVTGEDTIPRRKKAWG-GSVICATPEIARNDIERGLV 125
Query: 125 NLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVLRNLG 184
LE LVIFDEAHRAVG+YAY IAR N ++G+TA+ S +EK E++ L
Sbjct: 126 PLEQFGLVIFDEAHRAVGDYAYSSIARAV---GDNSRMVGMTATLPSEREKADEIMGTLL 182
Query: 185 IEHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAGLIES 244
I R+E+ PDVKPYVQ EWIKV+LP KE+++LL+ L + L G
Sbjct: 183 SRSIAQRTEDDPDVKPYVQETATEWIKVDLPPEMKEIQRLLKLALDERYSSLKRCGY--- 239
Query: 245 ASADLPKKEILRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYL 304
DL L A + GN K L A+++ +A+ + E G++ +
Sbjct: 240 ---DLGSNRSLSALLRLRMVVLGGNRRAAKPLF---TAIRITYALNIFEAHGVTPFLKFC 293
Query: 305 KKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKKEN 364
++ ++ G ++ DR A+A A+ G++HPK+ L++ V+
Sbjct: 294 ERTSKKKGVGVAELFEQ---DRNFTGAIARAKAAQAAGMEHPKIPKLEDAVRGA-----R 345
Query: 365 SKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFARGEFN 424
K +VFT+YR++ + L GI + +G+A ++G+ QR+Q + F G ++
Sbjct: 346 GKALVFTSYRDSVDLIHSRLKAAGINSGILIGKA---GEKGLKQRKQVETVAKFRDGGYD 402
Query: 425 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEAY 484
VLV+T VGEEGLD+ EV+LV+FY+ VPS+IR VQRRGRTGR+ GR+++L+A+GT DEAY
Sbjct: 403 VLVSTRVGEEGLDISEVNLVIFYDNVPSSIRYVQRRGRTGRKDAGRLIVLMAKGTIDEAY 462
Query: 485 YWSSKHK 491
YW + K
Sbjct: 463 YWIGRRK 469
>pir||T39190 probable ATP-dependent RNA helicase - fission yeast
(Schizosaccharomyces pombe) >gi|6014424|emb|CAB57423.1|
(AL121764) putative ATP-dependent RNA helicase
[Schizosaccharomyces pombe]
Length = 839
Score = 242 bits (611), Expect = 1e-62
Identities = 169/557 (30%), Positives = 285/557 (50%), Gaps = 21/557 (3%)
Query: 14 RLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGGK-VLMLAPTKPLVLQHA 72
R YQ I K N L+ LPTGLGKT IA ++ L + ++ +APTKPLV Q
Sbjct: 74 RDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNYLRWFPKSYIVFMAPTKPLVTQQM 133
Query: 73 ETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTGKINLEDVVLV 132
E K +P + L+G V + R + + V TPQT+ ND+ G + + +
Sbjct: 134 EACYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICDRTRISCL 193
Query: 133 IFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVLRNLGIEHIEYRS 192
+ DEAHR+ GNYAYV + KN ++ L+A+PG+ E I V+ +L I IE R+
Sbjct: 194 VIDEAHRSTGNYAYVEVVHLLSLSNKNFRILALSATPGNKLEAIQNVIDSLHISRIEIRT 253
Query: 193 ENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAGLIESASA-DLPK 251
ENS D+ YVQ + ++ V+L ++R +L L+ L + +A D+
Sbjct: 254 ENSIDISQYVQKKEVDFFPVDLSAEITDIRDRFSSILEPMLQKLNKGNYYRIQNAKDITS 313
Query: 252 KEILRAGQ---IINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYLKKLY 308
+++A Q ++ + N L F A+A + + LL G+ L+++
Sbjct: 314 FTVVQAKQAFLAMSGQNFPANQKWDILNTFDALA-TFAYPLNLLLNHGIRPFYQKLREVE 372
Query: 309 EEAKTGSTRASKELFLD---RRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKKE-- 363
EE G + K + R + + +L++ + + HPK+E L+ +V E K++
Sbjct: 373 EECFVGRSGYKKRIINHENYRPLMDDIEILLRDQSF-VGHPKLEHLERIVTEYFEKEQTK 431
Query: 364 NSKIIVFTNYRETARKVVEELTK--EGIKAKRFVGQATKENDRGMSQREQKLILDSFARG 421
+++I++F R +A +++ L K ++ F+GQ+ GMSQ+ Q + F +G
Sbjct: 432 DTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQKG 491
Query: 422 EFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRD 481
E N L+ATS+GEEGLD+ EVD+++ Y+ S IR +QR GRTGR++ G + +L+ +G ++
Sbjct: 492 EVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGRKRKGYIYMLLTRG-KE 550
Query: 482 EAYYWSSKHKERQMRETIRMVSQAIKREKQLSLESY-VKKDTEKEMEREEKEERKGEREG 540
EA + +K R +++ I R LS +SY + + + + + E E E
Sbjct: 551 EAKWERAKDAYRTLQDNI-----VSGRGLSLSEKSYRILPEKFRPVCDKRVIEIPKENEE 605
Query: 541 VKVVVDSRELRSEVVKR 557
V V +LR+++ K+
Sbjct: 606 VVVAPKKVQLRTKIKKK 622
>gb|AAF55897.1| (AE003735) CG7922 gene product [Drosophila melanogaster]
Length = 1383
Score = 235 bits (592), Expect = 2e-60
Identities = 167/558 (29%), Positives = 279/558 (49%), Gaps = 42/558 (7%)
Query: 14 RLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKY--GGKVLMLAPTKPLVLQH 71
R YQ+ I +N L+VLPTGLGKT IA ++ Y ++ GK++ +APT+PLV Q
Sbjct: 59 RSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVM-YNFYRWYPKGKIVFMAPTRPLVSQQ 117
Query: 72 AETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTG----KINLE 127
+K P E V LTG++ +R + W +V ATPQ V +D+L
Sbjct: 118 IHASQKIMPFPSEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHSDMLEADGECSFPFG 177
Query: 128 DVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVLRNLGIEH 187
+ L++ DEAHRA G YAY +A + + + ++ L+A+PG + E + V RNL I +
Sbjct: 178 SIKLIVVDEAHRAKGRYAYTQVADCLMARNRYFRMLALSATPGRTMEDVAAVCRNLYISN 237
Query: 188 IEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAGLIESASA 247
++ R + S DV+PY+ I V L KE R+ L ++ L+ L EA + +
Sbjct: 238 LQVRWDTSIDVQPYIHRRTIRTIVVSLKERIKEPRERLLQIIEPYLRQLMEAEIFKGNKG 297
Query: 248 DLPKKEILRAGQIINEETAKGNH--DLRKLLLFHAMALKLHHAIELLETQGLSALRVYL- 304
+ + +L + E +A+G D ++ AM + ++H+++L+E G LRV++
Sbjct: 298 TVSRNSLLFEQKSFVERSAQGQRHPDHNIIMGNFAMCISMYHSLDLMERHG---LRVFVN 354
Query: 305 --------KKLYEEAKTGSTRASKELFLDRRMKKALALLIQA----------KELGIDHP 346
++ + A+ G+ R E L A +L H
Sbjct: 355 NFDADDDGREKFVLARDGNLRNLVEQVRQELGANPLDYTTHAMTNGEVPPLPSDLDFGHA 414
Query: 347 KMEVLKELVKEQLSKKENSKIIVFTNYRETARKVVEELTKEG--IKAKRFVGQ-ATKEND 403
K E L++++ + +S+ IVF YRE+ + L + ++ + FVGQ +T
Sbjct: 415 KYEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQGSTVGAS 474
Query: 404 RGMSQREQKLILDSFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPV-PSAIRSVQRRGR 462
++Q++Q I+ F G NVLVATS+GEEGLDV EV+++V ++ + R +QR GR
Sbjct: 475 YALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQRIGR 534
Query: 463 TGRQKPGRVVILIAQGTRDEAYYWSSKHKERQMRETIRMVSQAIK-----REKQLSLESY 517
TGR+K G VV+L+ +G + +K++ ++ + S +K + ++ +
Sbjct: 535 TGRKKNGEVVMLVTEGREQQVLKDVLANKDQINKKLLN--SSVVKLSLYEQNPRMVPSKF 592
Query: 518 VKKDTEKEMEREEKEERK 535
K EK ME +E+ K
Sbjct: 593 QPKCEEKHMEPVAEEKPK 610
>gb|AAF79368.1|AC007887_27 (AC007887) F15O4.40 [Arabidopsis thaliana]
Length = 1587
Score = 205 bits (515), Expect = 2e-51
Identities = 164/542 (30%), Positives = 244/542 (44%), Gaps = 102/542 (18%)
Query: 14 RLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKY--GGKVLMLAPTKPLVLQH 71
R YQ I N L+ LPTGLGKT+IA ++ Y ++ GK++ AP++PLV+Q
Sbjct: 206 RDYQFAITKTALFSNTLVALPTGLGKTLIAAVVM-YNYFRWFPQGKIVFAAPSRPLVMQQ 264
Query: 72 AETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLLTGKINL----- 126
E +P E + LTG+ PS+R W +V TPQ +E D+ +G
Sbjct: 265 IEACHNIVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQSGDARFVLKLP 324
Query: 127 --------------EDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSS 172
+V ++ DEAHRA+GNY+Y + RE + ++ LTA+PGS
Sbjct: 325 LVHKDCPFSGTCLTNYLVCLVIDEAHRALGNYSYCVVVRELMAVPIQLRILALTATPGSK 384
Query: 173 QEKILEVLRNLGIEHIEYRSENSPDVKPYVQGIKFEWIKVELPGL-----YKEVRKLLRD 227
+ I ++ NL I +EYR+E+ DV PYV K E I+V+ + +V K L
Sbjct: 385 TQAIQGIIDNLQISTLEYRNESDHDVCPYVHDRKLEVIEVQAEQVPLGQDADDVSKRLFH 444
Query: 228 MLRDSLKPLAEAGLIESASADLPKKEILRAGQIINEETAKG----NH-DLRKLLLFHAMA 282
++R L G L E+L A + G NH D+ A
Sbjct: 445 VIRPYAVRLKNFG--------LSPHEVLMARDKFRQAPLPGLPHVNHGDVESCF---AAL 493
Query: 283 LKLHHAIELLETQGLSALRVYLKKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELG 342
+ L+H +LL + G +R + L E+ K G D RM K L+ Q G
Sbjct: 494 ITLYHIRKLLSSHG---IRPAYEMLEEKLKEGPFARLMSKNEDIRMTK--LLMQQRLSHG 548
Query: 343 IDHPKMEVLKEL-------VKEQLSKKENSKIIVFTNYRETA------------------ 377
PK+ + E+ V QL + N +I+F R
Sbjct: 549 APSPKLSKMLEILVDHFIDVSTQLVLQLNIDMILFYGCRSERSEDITGHYFLKFQRKRKV 608
Query: 378 ---------------------------RKVVEELTKEG--IKAKRFVGQATKENDRGMSQ 408
R ++ L+ G +KA F+GQ++ + +G SQ
Sbjct: 609 SIIVVCFPLFSCSSYFFVSIHPITLLFRDIMNALSNIGDMVKATEFIGQSSGKTLKGQSQ 668
Query: 409 REQKLILDSFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKP 468
+ Q+ +L+ F G FNV+VATS+GEEGLD+ EVDLV+ ++ S +R +QR GRTGR+
Sbjct: 669 KIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNN 728
Query: 469 GR 470
GR
Sbjct: 729 GR 730
>gi|6322192 Mph1p [Saccharomyces cerevisiae] >gi|731905|sp|P40562|YIS2_YEAST
PUTATIVE ATP-DEPENDENT RNA HELICASE YIR002C
>gi|626348|pir||S48436 probable RNA helicase YIR002c -
yeast (Saccharomyces cerevisiae)
>gi|557851|emb|CAA86204.1| (Z38062) orf, len: 993, CAI:
0.16 possible ATP dependent RNA helicase [Saccharomyces
cerevisiae]
Length = 993
Score = 192 bits (483), Expect = 1e-47
Identities = 163/621 (26%), Positives = 288/621 (46%), Gaps = 87/621 (14%)
Query: 3 TMYLRKELLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIA--MMIADYRLNKYGGKVLM 60
+ Y+ + R YQ I K +N L +PTG+GKT IA +M+ +R K K++
Sbjct: 77 SFYVYPTNYEVRDYQYTIVHKSLFQNTLCAIPTGMGKTFIASTVMLNYFRWTKKA-KIIF 135
Query: 61 LAPTKPLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVENDLL 120
APT+PLV Q + +P ++ L + S R + W +V ATPQ VENDL
Sbjct: 136 TAPTRPLVAQQIKACLGITGIPSDQTAILLDK-SRKNREEIWANKRVFFATPQVVENDLK 194
Query: 121 TGKINLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKNPHVIGLTASPGSSQEKILEVL 180
G ++ +D+V ++ DEAHRA G+ AY + + + ++ LTA+P S E + EV+
Sbjct: 195 RGVLDPKDIVCLVIDEAHRATGSSAYTNVVKFIDRFNSSYRLLALTATPASDLEGVQEVV 254
Query: 181 RNLGIEHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDMLRDSLKPLAEAG 240
NL I IE R+E S D+ Y++ K E I+V L +++ + L ++ L+ E G
Sbjct: 255 NNLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEIEDIIEQLGMAVKPVLQQAIELG 314
Query: 241 LIESASADLPK--KEILRAGQIINEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLS 298
+ E K + ++ +II T R + + + ++ L+ G+
Sbjct: 315 IYEECDPSQINAFKAMQQSQKIIANPTIPEGIKWRNFFILQLLN-NVGQMLKRLKIYGIR 373
Query: 299 ALRVYLKKLYEE------AKTGSTRASKELFLDRRMK----KALALLIQAKELGIDHPKM 348
Y + E K + + + E + +K + L K +G H K+
Sbjct: 374 TFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPILKNIKNQCENYLSDPKFVG--HGKL 431
Query: 349 EVLKELVKEQLSKK-ENSKIIVFTNYRETARKVV---EELTKEGIKAKRFVGQATKE--- 401
+ +++ + + K+ +S++I+FT RE+A ++V + + + I+ F+GQA +
Sbjct: 432 QCVRDELMDFFQKRGSDSRVIIFTELRESALEIVKFIDSVADDQIRPHIFIGQARAKEGF 491
Query: 402 --------------------------------------NDR--------GMSQREQ---- 411
ND+ G S+ Q
Sbjct: 492 DEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRAANDKLERSARRTGSSEEAQISGM 551
Query: 412 -----KLILDSFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQ 466
K ++ +F +GE+NVLV TS+GEEGLD+ EVDL++ Y+ S I+++QR GRTGR+
Sbjct: 552 NQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTGRK 611
Query: 467 KPGRVVILIAQGTRDEAYYWSSKHKERQMRETIRMVSQAI--KREKQLSLESYVKKDTEK 524
+ G++V+L + +E+Y + ++ + + + Q I K+ ++ E + + E
Sbjct: 612 RDGKIVLLFSS---NESYKFERAMEDYSTLQAL-ISKQCIDYKKSDRIIPEDIIPECHET 667
Query: 525 EMEREEKEERKGEREGVKVVV 545
+ ++ E E E V V+
Sbjct: 668 LITINDENEIINEMEDVDEVI 688
>pir||C71203 probable DNA excision repair protein - Pyrococcus horikoshii
>gi|3258335|dbj|BAA31018.1| (AP000007) 90aa long
hypothetical DNA excision repair protein [Pyrococcus
horikoshii]
Length = 90
Score = 157 bits (393), Expect = 4e-37
Identities = 78/89 (87%), Positives = 87/89 (97%)
Query: 664 MARREQEERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRLLKHFGSVERVFTAS 723
MA+REQEER+REVR+RGEKKALTLAERQR+IVESLP+VS TLA+RLL+HFGSVE+VFTAS
Sbjct: 1 MAKREQEERKREVRIRGEKKALTLAERQRMIVESLPNVSTTLARRLLRHFGSVEKVFTAS 60
Query: 724 VPELMKVEGIGEKIAREIRRVITSPYTED 752
VPELMKVEGIGEKIAREIRRVITSPY E+
Sbjct: 61 VPELMKVEGIGEKIAREIRRVITSPYIEE 89
>gi|7657516 RNA helicase [Homo sapiens] >gi|4405795|gb|AAD19826.1| (AF038963)
RNA helicase [Homo sapiens]
Length = 925
Score = 155 bits (387), Expect = 2e-36
Identities = 149/571 (26%), Positives = 262/571 (45%), Gaps = 52/571 (9%)
Query: 12 QPRLYQ-ELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYG----GKVLMLAPTKP 66
+PR YQ EL K +N +I PTG GKT ++++I ++ L K+ GKV+ A P
Sbjct: 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
Query: 67 LVLQHAETFRKFFNLPPEKIVALTGEVS---PSERVKAWNRAKVIIATPQTVENDLLTGK 123
+ Q F K+F ++ ++G + P E++ N +II TPQ + N+L G
Sbjct: 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLKKGT 359
Query: 124 I-NLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKN------PHVIGLTASPGSSQEK- 175
I +L L+IFDE H + Y I YL+Q P VIGLTAS G K
Sbjct: 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
Query: 176 -------ILEVLRNLGIEHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEVRKLLRDM 228
I ++ +L I N +++ V + + KVE + + + ++ +
Sbjct: 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE-SRISDKFKYIIAQL 478
Query: 229 LRDS-------LKPLAEAGLIESASADLPKKE-----ILRAGQIIN-EETAKGNHDLRKL 275
+RD+ K L I++ K E + +A + + + + + L
Sbjct: 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
Query: 276 LLFHAMALKLHHAIELLETQGLSALRVYLKKLYEEAKTGSTRASKELFLDRRMKKALALL 335
L+ + K + A+ + E + YLK + + ++ R +K L
Sbjct: 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFEEIEQDLTQRFEEKLQELE 598
Query: 336 IQAKELGIDHPKMEVLKELVKEQLSKKENSKIIVFTNYR---ETARKVVEELTKEG-IKA 391
+++ ++PK+E L +++E+ + I+F R + + +E K +K
Sbjct: 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
Query: 392 KRFVGQATKENDRGMSQREQKLILDSF-ARGEFNVLVATSVGEEGLDVPEVDLVVFYEPV 450
G+ + GM+ QK ILD+F A G+ N+L+ATSV +EG+D+ + +LV+ YE V
Sbjct: 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
Query: 451 PSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQMRETIRMV---SQAIK 507
+ I+ +Q RGR GR + + +L + E + +KE+ M ++I + +A+
Sbjct: 719 GNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQ-INMYKEKMMNDSILRLQTWDEAVF 776
Query: 508 REKQLSL---ESYVKKDTEKEMEREEKEERK 535
REK L + E +++ EK +KE +K
Sbjct: 777 REKILHIQTHEKFIRDSQEKPKPVPDKENKK 807
>pir||C72622 hypothetical protein APE1436 - Aeropyrum pernix (strain K1)
>gi|5105119|dbj|BAA80433.1| (AP000061) 254aa long
hypothetical protein [Aeropyrum pernix]
Length = 254
Score = 153 bits (382), Expect = 8e-36
Identities = 81/209 (38%), Positives = 132/209 (62%), Gaps = 1/209 (0%)
Query: 542 KVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLF 601
+V VD RE RS V L++LGV++ K L +GDY++SD + +ERK+++DF +S+ DGRLF
Sbjct: 20 RVYVDVREERSPVPSILESLGVQVIPKQLPMGDYLVSDSIIVERKTSSDFAKSLFDGRLF 79
Query: 602 DQVKRLKDSYPRPVVIVEGQLYGIR-NVHPNAIRGAIASIVIDFGVPIIFSSNPEETANY 660
+Q RL + Y +IVEG R ++ A+A++ +D+G+ ++ + +P+ TA
Sbjct: 80 EQASRLAEHYETVFIIVEGPPVPRRYRGRERSLYAAMAALQLDYGIRLMNTMDPKGTALV 139
Query: 661 IFFMARREQEERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRLLKHFGSVERVF 720
I +AR E + + + + + + E Q I++S P + A+R+L+ FGS+ER F
Sbjct: 140 IESLARLSTREGGQRIVIHKKPRLSDVREWQLYILQSFPGIGRRTAERILERFGSLERFF 199
Query: 721 TASVPELMKVEGIGEKIAREIRRVITSPY 749
TAS E+ KVEGIGEK A EI++++ +PY
Sbjct: 200 TASKAEISKVEGIGEKRAEEIKKILMTPY 228
>gi|11545922 melanoma differentiation associated protein-5 [Homo sapiens]
>gi|11344594|gb|AAG34368.1|AF095844_1 (AF095844)
melanoma differentiation associated protein-5 [Homo
sapiens]
Length = 1025
Score = 143 bits (356), Expect = 9e-33
Identities = 179/682 (26%), Positives = 291/682 (42%), Gaps = 137/682 (20%)
Query: 11 LQPRLYQ-ELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYG-----GKVLMLAPT 64
LQ R YQ E+ + +N +I LPTG GKT +A+ IA L+K GKV++L
Sbjct: 306 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 365
Query: 65 KPLVLQHAETFRKFFNLPPEK---IVALTGE----VSPSERVKAWNRAKVIIATPQTVEN 117
LV Q FRK F +K ++ L+G+ +S E VK+ + +II+T Q +EN
Sbjct: 366 VLLVEQ---LFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCD---IIISTAQILEN 419
Query: 118 DLLT------GKINLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQA-KN----------- 159
LL + L D L+I DE H Y I R YL Q KN
Sbjct: 420 SLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVI 479
Query: 160 --PHVIGLTASPG--------SSQEKILEVLRNLGIEHIEYRSENSPDVKPYVQGI--KF 207
P ++GLTASPG ++E IL++ NL I+ EN +K +Q KF
Sbjct: 480 PLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 539
Query: 208 EWIKVELPGLYKEVRKLLRDMLRDS----LKPLAEAGL--IESASADLPKKEILRAGQII 261
+KE KLL M R + P+++ G E + + KK
Sbjct: 540 AIADATREDPFKE--KLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKA-------- 589
Query: 262 NEETAKGNHDLRKLLLFHAMALKLHHAIELLETQGLSALRVYLKKLYEEAKTGSTRA--- 318
KGN RK + K + A+++ +T + +L+ Y E K
Sbjct: 590 ---AKKGN---RKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIED 643
Query: 319 --------------------SKELFLDRRMKKALALLIQ--------AKELGIDHPKMEV 350
K L LD + + L + A+ ++ K+
Sbjct: 644 DSDEGGDDEYCDGDEDEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTK 703
Query: 351 LKELVKEQLSKKENS-KIIVFTNYRETARKVVEELTKE------GIKAKRFVGQATKEND 403
L+ + EQ ++ E S + I+FT R++A + + +T+ G+KA +G
Sbjct: 704 LRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEF 763
Query: 404 RGMSQREQKLILDSFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRT 463
+ M+Q EQK ++ F G+ N+L+AT+V EEGLD+ E ++V+ Y V + I VQ RGR
Sbjct: 764 KPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGR- 822
Query: 464 GRQKPGRVVILIAQGTRDEAYYWSSKHKERQMRETIRMVSQAIKREKQLSLESYVKKDTE 523
R V++ G+ + + +E+ M + I V + + E Y K E
Sbjct: 823 ARADESTYVLVAHSGSGVIEHETVNDFREKMMYKAIHCV-------QNMKPEEYAHKILE 875
Query: 524 KEMEREEKEERKGEREGVKVVVDSRELRS----------------EVVKRLKTLGVKIEV 567
+M+ +++ K +R K ++ L + V++++ + + E
Sbjct: 876 LQMQSIMEKKMKTKRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEF 935
Query: 568 KTLDVGDYIISDEVAIERKSAN 589
K L YI+ + A+++K A+
Sbjct: 936 KEL----YIVRENKALQKKCAD 953
>gb|AAK41026.1| RNA helicase (ATP dependent)/eIF4A (eiF4A) [Sulfolobus
solfataricus]
Length = 233
Score = 141 bits (352), Expect = 3e-32
Identities = 75/215 (34%), Positives = 128/215 (58%), Gaps = 5/215 (2%)
Query: 541 VKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRL 600
+++ D RE S + + LK LG+ + L V DY+I+D+VA+ERKS ND + S+ D R
Sbjct: 3 IRIYADDREKASGIPELLKELGITVIFSQLTVADYVITDDVAVERKSVNDLVNSVFDKRF 62
Query: 601 FDQVKRLKDSYPRPVVIVEGQLYGIRNVHP--NAIRGAIASIVIDFGVPIIFSSNPEETA 658
FDQ+ RL + Y P+++VEG + IR + AI A+ S ID+ V + +S + ++TA
Sbjct: 63 FDQISRLSEVYRFPILLVEGDINDIRKITEKWRAINNALISATIDYDVKVFYSRDKKDTA 122
Query: 659 NYIFFMARREQ--EERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRLLKHFGSV 716
+ +A + Q E + + + + K ++++ Q IVES P+V + LA+RLL FG++
Sbjct: 123 EVLKKIAEKFQFGENKSNRISLHNKAKLESVSDIQLYIVESFPNVGSILAERLLLKFGTI 182
Query: 717 ERVFTASVPELMKVEGIGEKIAREIRRVITSPYTE 751
+ + AS+ EL K G K A +I +++ + Y++
Sbjct: 183 QNICNASISELEKALG-SRKKAEDIYKILRTHYSK 216
>emb|CAB57574.1| (Y18930) ATP-dependent RNA helicase, eIF-4A family [Sulfolobus
solfataricus]
Length = 233
Score = 141 bits (352), Expect = 3e-32
Identities = 75/215 (34%), Positives = 128/215 (58%), Gaps = 5/215 (2%)
Query: 541 VKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRL 600
+++ D RE S + + LK LG+ + L V DY+I+D+VA+ERKS ND + S+ D R
Sbjct: 3 IRIYADDREKASGIPELLKELGITVIFSQLTVADYVITDDVAVERKSVNDLVNSVFDKRF 62
Query: 601 FDQVKRLKDSYPRPVVIVEGQLYGIRNVHP--NAIRGAIASIVIDFGVPIIFSSNPEETA 658
FDQ+ RL + Y P+++VEG + IR + AI A+ S ID+ V + +S + ++TA
Sbjct: 63 FDQISRLSEVYRFPILLVEGDINDIRKITEKWRAINNALISATIDYDVKVFYSRDKKDTA 122
Query: 659 NYIFFMARREQ--EERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRLLKHFGSV 716
+ +A + Q E + + + + K ++++ Q IVES P+V + LA+RLL FG++
Sbjct: 123 EVLKKIAEKFQFGENKSNRISLHNKAKLESVSDIQLYIVESFPNVGSILAERLLLKFGTI 182
Query: 717 ERVFTASVPELMKVEGIGEKIAREIRRVITSPYTE 751
+ + AS+ EL K G K A +I +++ + Y++
Sbjct: 183 QNICNASISELEKALG-SRKKAEDIYKILRTHYSK 216
>gb|AAG09428.1|AF181119_1 (AF181119) RNA helicase [Sus scrofa]
Length = 940
Score = 132 bits (330), Expect = 1e-29
Identities = 140/566 (24%), Positives = 254/566 (44%), Gaps = 52/566 (9%)
Query: 11 LQPRLYQ-ELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYG----GKVLMLAPTK 65
L+PR YQ EL +N +I PTG GKT ++++I ++ L K+ GKV+ A
Sbjct: 239 LKPRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPRGRKGKVVFFAIQL 298
Query: 66 PLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAW-NRAKVIIATPQTVENDLLTGKI 124
P+ Q F K F K+ ++G S + V+ + +II TPQ + N L G I
Sbjct: 299 PVYEQQKSVFSKHFERLGYKVAGISGATSDTVCVEQIVENSDIIILTPQILVNCLTNGTI 358
Query: 125 -NLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKN------PHVIGLTASPG------- 170
+L L+IFDE H + Y I YL++ P VIGLTAS G
Sbjct: 359 PSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGDAKNK 418
Query: 171 -SSQEKILEVLRNLGIEHIEYRSENSPDVKPYVQGIKFEWIKVEL----------PGLYK 219
+ E I ++ +L I +N +++ V + + KVEL L
Sbjct: 419 AEATEYICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQLMM 478
Query: 220 EVRKLLRDMLRDSLKPLAEAGLIESASADLPKKEILRAGQIINEETA-------KGNHDL 272
E+ L + + + L + GL + +++ ++ + + +E A +
Sbjct: 479 EIESLAKSIFEE-LGTITLGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDKDKESRI 537
Query: 273 RKLLLFHAMALKLHH-AIELLETQGLSALRVYLKKLYEEAKTGSTRASKELFLDRRMKKA 331
K L + L++++ A+ + E + YLK + + ++ R +K
Sbjct: 538 CKALFSYMSHLRIYNDALIINEHARMKDALDYLKDFFRNIRAAGFDEIEQDLTQRFEEKL 597
Query: 332 LALLIQAKELGIDHPKMEVLKELVKEQLSKKENSKIIVFTNYR---ETARKVVEELTKEG 388
L + + ++PK+ L +++E+ ++ I+F R + +K ++E K
Sbjct: 598 QELESISIDPSNENPKLRDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIKENPKLS 657
Query: 389 -IKAKRFVGQATKENDRGMSQREQKLILDSFARGEFN-VLVATSVGEEGLDVPEVDLVVF 446
+K G+ + GM+ QK +LD+F + N +L+ TSV +EG+D+ + +LV+
Sbjct: 658 FLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNLVIL 717
Query: 447 YEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQMRETIRMV---S 503
YE V + I+ +Q RGR GR + + +L A + + +KE M I ++
Sbjct: 718 YEYVGNVIKMIQTRGR-GRARGSKCFLLTANADLIDKEK-MNMYKEEMMNGAILILQTWD 775
Query: 504 QAIKREK--QLSLESYVKKDTEKEME 527
+A+ +EK Q+ + + +D + + E
Sbjct: 776 EAVFKEKIHQIQIREKIIRDNQGKPE 801
>dbj|BAB13818.1| (AK021416) unnamed protein product [Homo sapiens]
Length = 678
Score = 131 bits (327), Expect = 2e-29
Identities = 137/569 (24%), Positives = 254/569 (44%), Gaps = 52/569 (9%)
Query: 11 LQPRLYQ-ELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKY-GGKVLMLAPTKPLV 68
++ R YQ E+I + +N +I LPTG GKT A +A L G KV++L LV
Sbjct: 1 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV 60
Query: 69 LQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAK-VIIATPQTVENDLLTGK---- 123
QH E FR+ + + L+G++ P R ++I T + ++ L + +
Sbjct: 61 TQHGEEFRRMLD-GRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEH 119
Query: 124 INLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKN-----PHVIGLTASPGSSQEK--- 175
+ L L++ DE H + Y I +YL P V+GLTASPG+
Sbjct: 120 VELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLD 179
Query: 176 -----ILEVLRNLGIEHIEYRSENSPDVKPYVQGI--KFEWIKVELPGLYKEVRKLLRDM 228
+L++ NL I P ++ + Q ++ + ++ K L D
Sbjct: 180 GAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQ 239
Query: 229 LRDSLKPLAEAGLIESASADLPKKEILRAGQIINEETAKGNHDLRKLLLFHAM----ALK 284
+ D L+ L + ++++++ ++E A +++ H AL
Sbjct: 240 IHDHLEM---PELSRKFGTQMYEQQVVK----LSEAAALAGLQEQRVYALHLRRYNDALL 292
Query: 285 LHHAIELLETQGLSALRVYLKKLYEEAKTGSTRASKEL---FLDRRMKKALALLIQAKEL 341
+H + ++ L+AL+ + + + KT A + L F DR+ + L
Sbjct: 293 IHDTVRAVDA--LAALQDFYHREHV-TKTQILCAERRLLALFDDRKNE-----LAHLATH 344
Query: 342 GIDHPKMEVLKELVKEQLSKKENSKIIVFTNYRETARKVVEELTKE------GIKAKRFV 395
G ++PK+E+L+++++ Q S + + I+FT R++A ++ L ++ I+A+ +
Sbjct: 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404
Query: 396 GQATKENDRGMSQREQKLILDSFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIR 455
G M+QR+Q+ ++ F G N+LVATSV EEGLD+P ++VV Y + + I
Sbjct: 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464
Query: 456 SVQRRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQMRETIRMVSQAIKREKQLSLE 515
VQ RGR + + +G+R+ ++ E M + + V + + E Q +
Sbjct: 465 MVQARGRAWADQ-SVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIR 523
Query: 516 SYVKKDTEKEMEREEKEERKGEREGVKVV 544
+ K + + E + ++ V+ V
Sbjct: 524 DLQQAALTKRAAQAAQRENQRQQFPVEHV 552
>gi|11499994 DNA repair protein, putative [Archaeoglobus fulgidus]
>gi|7483288|pir||C69552 DNA repair protein homolog -
Archaeoglobus fulgidus >gi|2650671|gb|AAB91244.1|
(AE001108) DNA repair protein, putative [Archaeoglobus
fulgidus]
Length = 208
Score = 119 bits (295), Expect = 1e-25
Identities = 76/211 (36%), Positives = 121/211 (57%), Gaps = 17/211 (8%)
Query: 543 VVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISD---EVAIERKSANDFIQSIIDGR 599
+ VDSRE +V++LK+LG+ + VK L+VGDY+I EV +ERK NDFI SIIDGR
Sbjct: 2 IFVDSRE-PERIVEKLKSLGLDVYVKRLEVGDYLIKHSIYEVPVERKDVNDFISSIIDGR 60
Query: 600 LFDQVKRLKDSYPRPVVIVEGQLYGI---RNVHPNAIRGAIASIVIDFG----VPIIFSS 652
LF Q L YP ++ V G + R + +A+ GA+ S+ I VP++F +
Sbjct: 61 LFRQCHLLSSRYPLSILAVIGDIDEAVEERGISRSAVIGAMVSMAIKNAQGQVVPLVFKN 120
Query: 653 NPEETANYIFFMARREQEERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRLLKH 712
+ F +A + + R + ++ + + + ++ ++P + A++LL +
Sbjct: 121 EDD------FCLALKSIDSRVSQGDLKILPRLKSHENPKIAMLTAIPGIGEKKAEKLLDY 174
Query: 713 FGSVERVFTASVPELMKVEGIGEKIAREIRR 743
FGS++R+ AS+ EL +V+GIGEK AREI R
Sbjct: 175 FGSIQRIANASIAELKRVDGIGEKKAREIYR 205
>sp|Q09884|YC9A_SCHPO HYPOTHETICAL HELICASE C584.10C IN CHROMOSOME III
>gi|2130449|pir||S62524 probable RNA
helicase/ribonuclease SPAC8A4.08c - fission yeast
(Schizosaccharomyces pombe) >gi|7491257|pir||T39130
hypothetical protein SPAC8A4.08c - fission yeast
(Schizosaccharomyces pombe) >gi|7493293|pir||T41432
ribonuclease - fission yeast (Schizosaccharomyces pombe)
>gi|1052539|emb|CAA91518.1| (Z66569) unknown
[Schizosaccharomyces pombe] >gi|4456833|emb|CAB37423.1|
(AL032824) ribonuclease [Schizosaccharomyces pombe]
Length = 1374
Score = 113 bits (281), Expect = 6e-24
Identities = 135/542 (24%), Positives = 240/542 (43%), Gaps = 85/542 (15%)
Query: 5 YLRKELLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRL---------NKYG 55
+L +LL R YQ+ +Y ++N L+V+ TG GKT++A+ + +L N
Sbjct: 6 FLLPQLL--RKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEH 63
Query: 56 GKVLMLAPTK-PLVLQHAETFRKFFNLPPEKIVALTGEVS--PSERV--KAWNRAKVIIA 110
K+ + K PLV Q AE R P K+ GE+S SE++ + VI+
Sbjct: 64 KKISVFLVNKVPLVFQQAEYIRSQL---PAKVGMFYGELSIEMSEQLLTNIILKYNVIVI 120
Query: 111 TPQTVENDLLTGKINLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKN---------PH 161
T L G +++ D+ L+IFDE H A+GN AY I ++ ++AK P
Sbjct: 121 TADLFYLFLARGFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPR 180
Query: 162 VIGLTASPGSSQEKILEVLRNLGIEHIEYRSENSPDVKPYVQGIKFEWIKVELPGLYKEV 221
+ G+TASP + ++ + H Y+ E D K +V + EL +
Sbjct: 181 IFGMTASPFTGKKG--------NLYHRLYQWEQLFDSKAHVVS------ENELADYF--- 223
Query: 222 RKLLRDMLRDSLKPLAEAGLIESASADLPKK--EILRAGQIINEETAKGNHDLRKLLLFH 279
L + + L+ S + KK E L+ ++I+ + + L+
Sbjct: 224 ------CLPEESYVMYSNKLVVPPSDSIIKKCEETLQGCKLISRAVKTALAETIDMGLWF 277
Query: 280 AMALKLHHAIELLETQGLSALRVYLKKLYEEAKTGSTRASKELFLDRRMKKALALLIQAK 339
+ L + ++ +ET K+L ++A +EL +DR K +
Sbjct: 278 GEQVWL-YLVDFVET----------KRLKKKALGKQLSDDEELAIDR--LKIFVEDWKNN 324
Query: 340 ELGIDHPKMEV------------LKELVKEQLSKKENSKIIVFTNYRETARKV---VEEL 384
+ + P++ V L EL+K K ++ + ++F + TA + ++ L
Sbjct: 325 KYSDNGPRIPVFDSTDVTDKVFKLLELLKATYRKSDSVRTVIFVERKATAFTLSLFMKTL 384
Query: 385 TKEGIKAKRFVGQA-TKENDRGMSQREQKLILDSFARGEFNVLVATSVGEEGLDVPEVDL 443
I+A F+G + + + M+ R QK L F G++NVL+AT+V EEG+DVP +L
Sbjct: 385 NLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNL 444
Query: 444 VVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQMRETIRMVS 503
V+ + + + VQ RGR R + +I + T + + H+E+ ++ + +S
Sbjct: 445 VIRFNICRTVTQYVQSRGR-ARAMASKFLIFL--NTEELLIHERILHEEKNLKFALSELS 501
Query: 504 QA 505
+
Sbjct: 502 NS 503
>pir||T32534 hypothetical protein F15B10.2 - Caenorhabditis elegans
>gi|2662588|gb|AAB88350.1| (AF036696) contains
similarity to helicases [Caenorhabditis elegans]
Length = 1037
Score = 111 bits (276), Expect = 2e-23
Identities = 140/608 (23%), Positives = 245/608 (40%), Gaps = 86/608 (14%)
Query: 4 MYLRKELLQPRLYQELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKYGG-----KV 58
++ +++L +EL + +N ++ PTG GKT+IA I K
Sbjct: 285 IHRQRQLCLRNYQEELCQVALQGKNTIVTAPTGSGKTVIAANIIKEHFESRSSEGKRFKA 344
Query: 59 LMLAPTKPLVLQHAETFRKFFNLPPEKIVALTGEVSPSERVKAWNRAKVIIATPQTVEND 118
L + P ++ Q A + + + + + P+ V +I+ATPQ + N
Sbjct: 345 LFMTPNSMILNQQAASISSYLDHVYHTQIIQGSDNVPTRNVI--QSKDLIVATPQMIVNL 402
Query: 119 LLTGKINLED-----------VVLVIFDEAHRAVGNYAYVYIAREYLNQAKN-------- 159
+ +L+D ++ FDE H V N Y I REY + KN
Sbjct: 403 CNEHRNSLDDESRLDQFFLSTFTIIFFDECHNTVKNSPYSNIMREY-HYLKNMGNMPEGH 461
Query: 160 --PHVIGLTASPGSSQEKILEVLRN--------LGIEHIEYRSENSPDVKPYVQGIKFEW 209
P +IGLTAS G+ + +RN + ++ + +N +++ Y + +
Sbjct: 462 SLPQIIGLTASLGTGDKNDCLQVRNYIAGLCASMDVKDLSIVKDNLEELRGYSPIVPDKV 521
Query: 210 IKVE-------------LPGLYKEVRKLLRDMLRDSLKPLAEAGLIESASADLPKKEILR 256
+ E L + +EV L+R LR+ + + IE+ D
Sbjct: 522 LLCERSTDGPIGMFTNRLTLMMQEVEGLIRTALRNEHIGIEQRRQIETTERDFRPDSSFL 581
Query: 257 AGQIINEETAKGNHDLRKLLLFHAMALK-------LHHAIELLETQGLSAL-------RV 302
E N ++ L + + ++ A+++L+ + V
Sbjct: 582 DPPADKEHAGYQNWVCNQMNLVSGTSFRETGTRTIINEALDVLKECFCTLSYNINFHPEV 641
Query: 303 YLKKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKK 362
L L +E + + + + R ++ L+ ++P + + + EQ ++
Sbjct: 642 ALNYLKDEMEYRTPNFTVNMI--RIWERYHNQLVGTGSA--ENPMISKTVQYIVEQNLQR 697
Query: 363 ENSKIIVF--TNYRETARKVV----EELTKEGIKAKRFVG---QATKENDRGMSQREQKL 413
+S+ I+F T Y T V EEL GIK++ G D S+++Q
Sbjct: 698 ADSRTIIFVRTRYEATILNKVLNSNEELLMLGIKSEWMSGLNKSTASSADISASKQKQME 757
Query: 414 ILDSFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVI 473
L FA GE +LV+TSV EEGLDVPE LV+ Y + I VQRRGR V+I
Sbjct: 758 KLKMFADGEIRILVSTSVAEEGLDVPECSLVIKYNYATNEIAHVQRRGRGRALNSECVLI 817
Query: 474 LIAQGTRDEAYYWSSKHKERQMRETIRMVS-------QAIKREKQLSLESYVKKDTEKEM 526
+ RD+ +++ KE M ETI ++ + + E +++DT+K
Sbjct: 818 TNSIALRDQES--NNRDKESLMSETISLIQNSPAEFRKCVDEESNKIWPRILREDTDKAQ 875
Query: 527 EREEKEER 534
+ EE+ R
Sbjct: 876 KIEEQINR 883
>gi|4885217 excision repair cross-complementing rodent repair deficiency,
complementation group 4; Excision-repair, complementing
defective, in Chinese hamster,; xeroderma pigmentosum,
complementation group F [Homo sapiens]
>gi|11430345|ref|XP_007800.1| excision repair
cross-complementing rodent repair deficiency,
complementation group 4 [Homo sapiens]
>gi|1905924|gb|AAB50174.1| (L77890) DNA repair protein
[Homo sapiens]
Length = 916
Score = 97.5 bits (239), Expect = 5e-19
Identities = 81/316 (25%), Positives = 151/316 (47%), Gaps = 31/316 (9%)
Query: 444 VVFYEPVPSAIRSVQ--RRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQ-----MR 496
VV Y+ + +R ++ R R G KP RV LI G+ +E Y ++ KE++ +R
Sbjct: 578 VVLYDAELTFVRQLEIYRASRPG--KPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIR 635
Query: 497 ETIRMVSQAIKREKQLSLESYVKKDTEKEMEREEKEERKGEREGVK--VVVDSRELRSEV 554
E MV + + + V+ ++ + ++ E+ G + +VVD RE RSE+
Sbjct: 636 EKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQEQNGTQQSIVVDMREFRSEL 695
Query: 555 VKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLFDQVKRLKDSYPRP 614
+ G+ IE TL+VGDYI++ E+ +ERKS +D I S+ +GRL+ Q + Y RP
Sbjct: 696 PSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQCISMSRYYKRP 755
Query: 615 VVIVE------------GQLYGIRNVHPNAIRGAIASIVIDF-GVPIIFSSNPEETANYI 661
V+++E G L+ + + N I + + + F + I++ +P TA
Sbjct: 756 VLLIEFDPSKPFSLTSRGALF--QEISSNDISSKLTLLTLHFPRLRILWCPSPHATAELF 813
Query: 662 FFMAR-REQEERRREVRVRGEKKALTLAER----QRLIVESLPHVSATLAKRLLKHFGSV 716
+ + + Q + + + + + L +E+ + + +P V+A + L+ H ++
Sbjct: 814 EELKQSKPQPDAATALAITADSETLPESEKYNPGPQDFLLKMPGVNAKNCRSLMHHVKNI 873
Query: 717 ERVFTASVPELMKVEG 732
+ S EL + G
Sbjct: 874 AELAALSQDELTSILG 889
>sp|Q92889|XPF_HUMAN DNA-REPAIR PROTEIN COMPLEMENTING XP-F CELL (XERODERMA PIGMENTOSUM
GROUP F COMPLEMENTING PROTEIN) (DNA EXCISION REPAIR
PROTEIN ERCC-4)
Length = 905
Score = 97.5 bits (239), Expect = 5e-19
Identities = 81/316 (25%), Positives = 151/316 (47%), Gaps = 31/316 (9%)
Query: 444 VVFYEPVPSAIRSVQ--RRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQ-----MR 496
VV Y+ + +R ++ R R G KP RV LI G+ +E Y ++ KE++ +R
Sbjct: 567 VVLYDAELTFVRQLEIYRASRPG--KPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIR 624
Query: 497 ETIRMVSQAIKREKQLSLESYVKKDTEKEMEREEKEERKGEREGVK--VVVDSRELRSEV 554
E MV + + + V+ ++ + ++ E+ G + +VVD RE RSE+
Sbjct: 625 EKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQEQNGTQQSIVVDMREFRSEL 684
Query: 555 VKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLFDQVKRLKDSYPRP 614
+ G+ IE TL+VGDYI++ E+ +ERKS +D I S+ +GRL+ Q + Y RP
Sbjct: 685 PSLIHRRGIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQCISMSRYYKRP 744
Query: 615 VVIVE------------GQLYGIRNVHPNAIRGAIASIVIDF-GVPIIFSSNPEETANYI 661
V+++E G L+ + + N I + + + F + I++ +P TA
Sbjct: 745 VLLIEFDPSKPFSLTSRGALF--QEISSNDISSKLTLLTLHFPRLRILWCPSPHATAELF 802
Query: 662 FFMAR-REQEERRREVRVRGEKKALTLAER----QRLIVESLPHVSATLAKRLLKHFGSV 716
+ + + Q + + + + + L +E+ + + +P V+A + L+ H ++
Sbjct: 803 EELKQSKPQPDAATALAITADSETLPESEKYNPGPQDFLLKMPGVNAKNCRSLMHHVKNI 862
Query: 717 ERVFTASVPELMKVEG 732
+ S EL + G
Sbjct: 863 AELAALSQDELTSILG 878
>gb|AAB07689.1| (U64315) DNA repair endonuclease subunit [Homo sapiens]
Length = 905
Score = 94.8 bits (232), Expect = 3e-18
Identities = 80/316 (25%), Positives = 150/316 (47%), Gaps = 31/316 (9%)
Query: 444 VVFYEPVPSAIRSVQ--RRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQ-----MR 496
VV Y+ + +R ++ R R G KP RV LI G+ +E Y ++ KE++ +R
Sbjct: 567 VVLYDAELTFVRQLEIYRASRPG--KPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIR 624
Query: 497 ETIRMVSQAIKREKQLSLESYVKKDTEKEMEREEKEERKGEREGVK--VVVDSRELRSEV 554
E MV + + + V+ ++ + ++ E+ G + +VVD RE RSE+
Sbjct: 625 EKASMVVPEEREGRDETNLDLVRGTASADVSTDTRKAGGQEQNGTQQSIVVDMREFRSEL 684
Query: 555 VKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLFDQVKRLKDSYPRP 614
+ + IE TL+VGDYI++ E+ +ERKS +D I S+ +GRL+ Q + Y RP
Sbjct: 685 PSLIHRRDIDIEPVTLEVGDYILTPEMCVERKSISDLIGSLNNGRLYSQCISMSRYYKRP 744
Query: 615 VVIVE------------GQLYGIRNVHPNAIRGAIASIVIDF-GVPIIFSSNPEETANYI 661
V+++E G L+ + + N I + + + F + I++ +P TA
Sbjct: 745 VLLIEFDPSKPFSLTSRGALF--QEISSNDISSKLTLLTLHFPRLRILWCPSPHATAELF 802
Query: 662 FFMAR-REQEERRREVRVRGEKKALTLAER----QRLIVESLPHVSATLAKRLLKHFGSV 716
+ + + Q + + + + + L +E+ + + +P V+A + L+ H ++
Sbjct: 803 EELKQSKPQPDAATALAITADSETLPESEKYNPGPQDFLLKMPGVNAKNCRSLMHHVKNI 862
Query: 717 ERVFTASVPELMKVEG 732
+ S EL + G
Sbjct: 863 AELAALSQDELTSILG 878
>dbj|BAA89229.1| (AB017635) ERCC4 [Cricetulus griseus]
Length = 913
Score = 90.9 bits (222), Expect = 5e-17
Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 51/344 (14%)
Query: 318 ASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKKENSKIIVFTNYRETA 377
A E FL R +K +A+E+ ++ K + K +K K+ R +
Sbjct: 423 AGAEAFLLRLYRKTFEKDSKAEEVWVNLRKGDGPKRTMKSDKRPKDTKN-----KERAST 477
Query: 378 RKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFARG----------EFNVLV 427
+K + K + + +G A + + G ++ +Q+ S G + N+
Sbjct: 478 KKGAPKRKKRELTLTQVMGTAEEPPEEGAAEEDQQRQATSSPEGCGGEIQHEAFDLNLSS 537
Query: 428 ATSVG--EEGLDV-------------------PEVDLVVFYEPVPSAIRSVQ--RRGRTG 464
++ G +E L + E VV Y+ + +R ++ R R G
Sbjct: 538 DSAYGILKEPLTIIHPLVGCSDPYALTRVLHEVEPRYVVLYDAELTFVRQLEIYRASRPG 597
Query: 465 RQKPGRVVILIAQGTRDEAYYWSSKHKERQ-----MRETIRMV---SQAIKREKQLSL-E 515
KP RV LI G+ +E Y ++ KE++ +RE MV + + E L L
Sbjct: 598 --KPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREKASMVVPEEREGRDETNLDLAR 655
Query: 516 SYVKKDTEKEMEREEKEERKGEREGVKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDY 575
V D + + +E G + + VVD RE RSE+ + G+ IE TL+VGDY
Sbjct: 656 GTVSTDAPADTRKAGGQEHNGTQPSI--VVDMREFRSELPSLIHRRGIDIEPVTLEVGDY 713
Query: 576 IISDEVAIERKSANDFIQSIIDGRLFDQVKRLKDSYPRPVVIVE 619
I++ E+ +ERKS +D I S+ GRL+ Q + Y RPV+++E
Sbjct: 714 ILTPELCVERKSVSDLIGSLNSGRLYSQCLAMSRYYRRPVLLIE 757
>gb|AAC03240.1| (AC004155) ERCC4_MOUSE [Mus musculus]
Length = 917
Score = 88.5 bits (216), Expect = 2e-16
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 15/187 (8%)
Query: 444 VVFYEPVPSAIRSVQ--RRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQMRETI-- 499
VV Y+ + +R ++ R R G KP RV LI G+ +E Y ++ KE++ E +
Sbjct: 579 VVLYDAELTFVRQLEIYRASRPG--KPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIR 636
Query: 500 RMVSQAIKREKQLSLESYVKK-------DTEKEMEREEKEERKGEREGVKVVVDSRELRS 552
S + E++ E+ + D + + +E+ G + + VVD RE RS
Sbjct: 637 EKASMVVPEEREGRDETNLDLARGSAALDAPTDTRKAGGQEQNGTQSSI--VVDMREFRS 694
Query: 553 EVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLFDQVKRLKDSYP 612
E+ + G+ IE TL+VGDYI++ E+ +ERKS +D I S+ GRL+ Q + Y
Sbjct: 695 ELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSGRLYSQCLAMSRYYR 754
Query: 613 RPVVIVE 619
RPV+++E
Sbjct: 755 RPVLLIE 761
>gi|7657064 excision repair cross-complementing rodent repair deficiency,
complementation group 4 [Mus musculus]
>gi|6063149|gb|AAF03157.1|AF189285_1 (AF189285) DNA
repair endonuclease XPF [Mus musculus]
Length = 917
Score = 88.5 bits (216), Expect = 2e-16
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 15/187 (8%)
Query: 444 VVFYEPVPSAIRSVQ--RRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQMRETI-- 499
VV Y+ + +R ++ R R G KP RV LI G+ +E Y ++ KE++ E +
Sbjct: 579 VVLYDAELTFVRQLEIYRASRPG--KPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIR 636
Query: 500 RMVSQAIKREKQLSLESYVKK-------DTEKEMEREEKEERKGEREGVKVVVDSRELRS 552
S + E++ E+ + D + + +E+ G + + VVD RE RS
Sbjct: 637 EKASMVVPEEREGRDETNLDLARGSAALDAPTDTRKAGGQEQNGTQSSI--VVDMREFRS 694
Query: 553 EVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLFDQVKRLKDSYP 612
E+ + G+ IE TL+VGDYI++ E+ +ERKS +D I S+ GRL+ Q + Y
Sbjct: 695 ELPSLIHRRGIDIEPVTLEVGDYILTPELCVERKSVSDLIGSLHSGRLYSQCLAMSRYYR 754
Query: 613 RPVVIVE 619
RPV+++E
Sbjct: 755 RPVLLIE 761
>pir||T46312 hypothetical protein DKFZp434J1111.1 - human (fragment)
>gi|6808358|emb|CAB70840.1| (AL137608) hypothetical
protein [Homo sapiens]
Length = 398
Score = 87.4 bits (213), Expect = 5e-16
Identities = 71/274 (25%), Positives = 133/274 (47%), Gaps = 13/274 (4%)
Query: 273 RKLLLFHAMALKLHHAIELLETQGLSALRVYLKKLYEEAKTGSTRASKELFLDRRMKKAL 332
+ L L+ + K + A+ + E + YLK + + ++ R +K
Sbjct: 9 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 68
Query: 333 ALLIQAKELGIDHPKMEVLKELVKEQLSKKENSKIIVFTNYR---ETARKVVEELTKEG- 388
L +++ ++PK+E L +++E+ + I+F R + + +E K
Sbjct: 69 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 128
Query: 389 IKAKRFVGQATKENDRGMSQREQKLILDSF-ARGEFNVLVATSVGEEGLDVPEVDLVVFY 447
+K G+ + GM+ QK ILD+F A G+ N+L+ATSV +EG+D+ + +LV+ Y
Sbjct: 129 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY 188
Query: 448 EPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQMRETIRMV---SQ 504
E V + I+ +Q RGR GR + + +L + E + +KE+ M ++I + +
Sbjct: 189 EYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQ-INMYKEKMMNDSILRLQTWDE 246
Query: 505 AIKREKQLSL---ESYVKKDTEKEMEREEKEERK 535
A+ REK L + E +++ EK +KE +K
Sbjct: 247 AVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK 280
>gi|11526480 RNA helicase [Homo sapiens]
Length = 590
Score = 86.2 bits (210), Expect = 1e-15
Identities = 63/179 (35%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 12 QPRLYQ-ELIYAKCKERNCLIVLPTGLGKTIIAMMIADYRLNKY----GGKVLMLAPTKP 66
+PR YQ EL K +N +I PTG GKT ++++I ++ L K+ GKV+ A P
Sbjct: 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
Query: 67 LVLQHAETFRKFFNLPPEKIVALTG---EVSPSERVKAWNRAKVIIATPQTVENDLLTGK 123
+ Q F K+F ++ ++G E P E++ N +II TPQ + N+L G
Sbjct: 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLKKGT 359
Query: 124 I-NLEDVVLVIFDEAHRAVGNYAYVYIAREYLNQAKN------PHVIGLTASPGSSQEK 175
I +L L+IFDE H + Y I YL+Q P VIGLTAS G K
Sbjct: 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAK 418
>gb|AAF01274.1|AF160500_1 (AF160500) repair endonuclease [Arabidopsis thaliana]
>gi|9759161|dbj|BAB09717.1| (AB010072) repair
endonuclease [Arabidopsis thaliana]
Length = 956
Score = 83.1 bits (202), Expect = 1e-14
Identities = 81/347 (23%), Positives = 152/347 (43%), Gaps = 39/347 (11%)
Query: 436 LDVPEVDLVVFYEPVPSAIRSVQ-RRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQ 494
LD+ + +++ Y P +R ++ + +K I + T + + S + +
Sbjct: 612 LDILKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDESTEVQKFEASIRRENEA 671
Query: 495 MRETIRMVSQAIKREKQLSL-------ESYVKKDTEKEMEREEKEERKGEREGVKVVVDS 547
IR S I Q L + T+ + R+ ++ E+E +V+VD
Sbjct: 672 FESLIRQKSSMIIPVDQDGLCMGSNSSTEFPASSTQNSLTRKAGGRKELEKE-TQVIVDM 730
Query: 548 RELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLFDQVKRL 607
RE S + L G+KI TL+VGDYI+S + +ERKS D QS GRLF QV+ +
Sbjct: 731 REFMSSLPNVLHQKGMKIIPVTLEVGDYILSPSICVERKSIQDLFQSFTSGRLFHQVEMM 790
Query: 608 KDSYPRPVVIVE---GQLYGIR-------NVHPNAIRGAIASIVIDF-GVPIIFSSNPEE 656
Y PV+++E + + + +V P I ++ +V+ F + +++S +
Sbjct: 791 SRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLHFPRLRLLWSRSLHA 850
Query: 657 TAN-YIFFMARREQEERRREVRV-------------RGEKKALTLAERQRLIVESLPHVS 702
TA + + +++ + R +RV R E + E + LP VS
Sbjct: 851 TAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENYNTSAVE----FLRRLPGVS 906
Query: 703 ATLAKRLLKHFGSVERVFTASVPELMKVEGIGEKIAREIRRVITSPY 749
+ +++ S+ + + V L ++ G G K+A+ +R + + Y
Sbjct: 907 DANYRSIMEKCKSLAELASLPVETLAELMG-GHKVAKSLREFLDAKY 952
>dbj|BAA28847.1| (AB009461) MUS38 [Neurospora crassa]
Length = 892
Score = 81.9 bits (199), Expect = 2e-14
Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 29/265 (10%)
Query: 433 EEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKE 492
E L+ + ++ YEP S IR V+ + + RV L G+ +E Y SS +E
Sbjct: 530 EHVLEEVKPKYIIMYEPDASFIRRVEVYRSSHNDRNVRVYFLYYGGSVEEQRYLSSVRRE 589
Query: 493 RQMRETIRMVSQAIKREKQLSLESYVKKDTEKEMEREEKEE-------RKGEREGVKVVV 545
+ +++ + ++ +S+ +D E R K + +VVV
Sbjct: 590 KDA--FTKLIRERASMSIVMTTDSHGVEDPESAFLRTINTRIAGGGKLAKATAQPPRVVV 647
Query: 546 DSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLFDQVK 605
D RE RS + L + I L VGDYI+S + +ERKS +D I S DGRL+ Q +
Sbjct: 648 DVREFRSSLPSLLHGRSMVIVPCMLTVGDYILSPNICVERKSVSDLISSFKDGRLYAQCE 707
Query: 606 RLKDSYPRPVVIVE----------------GQLYGIRNVHPNAIRGAI-ASIVIDFGVP- 647
+ Y P++++E G L + + A R A+ S ++ P
Sbjct: 708 TMFQHYRNPMLLIEFDQNKSFTLEPFADLSGSLRSVNPENAGAQRLAVQKSCLLTLAFPK 767
Query: 648 --IIFSSNPEETANYIFFMARREQE 670
II+SS+P ETA + E+E
Sbjct: 768 LRIIWSSSPYETAEIFERLKALEEE 792
>gb|AAF81910.1|AF277377_1 (AF277377) 5' repair endonuclease [Arabidopsis thaliana]
Length = 956
Score = 80.4 bits (195), Expect = 7e-14
Identities = 80/347 (23%), Positives = 151/347 (43%), Gaps = 39/347 (11%)
Query: 436 LDVPEVDLVVFYEPVPSAIRSVQ-RRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQ 494
LD+ + +++ Y P +R ++ + +K I + T + + S + +
Sbjct: 612 LDILKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDESTEVQKFEASIRRENEA 671
Query: 495 MRETIRMVSQAIKREKQLSL-------ESYVKKDTEKEMEREEKEERKGEREGVKVVVDS 547
IR S I Q L + T+ + R+ ++ E+E +V+VD
Sbjct: 672 FESLIRQKSSMIIPVDQDGLCMGSNSSTEFPASSTQNSLTRKAGGRKEVEKE-TQVIVDM 730
Query: 548 RELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLFDQVKRL 607
RE S + L G+KI TL+VGDYI+S + +ERKS D QS GRLF QV+ +
Sbjct: 731 REFMSSLPNVLHQKGMKIIPVTLEVGDYILSPSICVERKSIQDLFQSFTSGRLFHQVEMM 790
Query: 608 KDSYPRPVVIVE---GQLYGIR-------NVHPNAIRGAIASIVIDF-GVPIIFSSNPEE 656
Y PV+++E + + + +V P I ++ +V+ + +++S +
Sbjct: 791 SRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLHSPRLRLLWSRSLHA 850
Query: 657 TAN-YIFFMARREQEERRREVRV-------------RGEKKALTLAERQRLIVESLPHVS 702
TA + + +++ + R +RV R E + E + LP VS
Sbjct: 851 TAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENYNTSAVE----FLRRLPGVS 906
Query: 703 ATLAKRLLKHFGSVERVFTASVPELMKVEGIGEKIAREIRRVITSPY 749
+ +++ S+ + + V L ++ G G K+A+ +R + + Y
Sbjct: 907 DANYRSIMEKCKSLAELASLPVETLAELMG-GHKVAKSLREFLDAKY 952
>gb|AAF45938.1| (AE003430) mei-9 gene product [Drosophila melanogaster]
Length = 961
Score = 77.3 bits (187), Expect = 6e-13
Identities = 56/201 (27%), Positives = 104/201 (50%), Gaps = 14/201 (6%)
Query: 433 EEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPG---RVVILIAQGTRDEAYYWSSK 489
E L+ + VV Y +AIR ++ R P +V LI T +E Y +S
Sbjct: 574 EHMLEQLQPHYVVMYNMNVTAIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTSL 633
Query: 490 HKERQMRETI-----RMVSQAIKREKQ----LSLESYVKKDTEKEMEREEK--EERKGER 538
+E+ E I +MV + K L L++Y + T++ + + + + +
Sbjct: 634 RREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQATK 693
Query: 539 EGVKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDG 598
E KV+VD RE RS++ + G+++ T+ +GDYI++ ++ +ERKS +D I S+ G
Sbjct: 694 ETPKVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPDICVERKSISDLIGSLNSG 753
Query: 599 RLFDQVKRLKDSYPRPVVIVE 619
RL++Q +++ Y +P++++E
Sbjct: 754 RLYNQCVQMQRHYAKPILLIE 774
>sp|Q24087|MEI9_DROME MEI-9 PROTEIN (MEIOTIC-9 PROTEIN) >gi|2133695|pir||S58936 meiotic
recombination protein mei-9 - fruit fly (Drosophila
melanogaster) >gi|924919|gb|AAC46917.1| (U27181) MEI-9
[Drosophila melanogaster] >gi|1585596|prf||2201389A
mei-9 gene [Drosophila melanogaster]
Length = 926
Score = 75.3 bits (182), Expect = 2e-12
Identities = 55/201 (27%), Positives = 103/201 (50%), Gaps = 14/201 (6%)
Query: 433 EEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPG---RVVILIAQGTRDEAYYWSSK 489
E L+ + VV Y + IR ++ R P +V LI T +E Y +S
Sbjct: 531 EHMLEQLQPHYVVMYNMNVTPIRQLEVFEARRRLPPADRMKVYFLIHARTVEEQAYLTSL 590
Query: 490 HKERQMRETI-----RMVSQAIKREKQ----LSLESYVKKDTEKEMEREEK--EERKGER 538
+E+ E I +MV + K L L++Y + T++ + + + + +
Sbjct: 591 RREKAAFEFIIDTKSKMVIPKYQDGKTDEAFLLLKTYDDEPTDENAKSRQAGGQAPQATK 650
Query: 539 EGVKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDG 598
E KV+VD RE RS++ + G+++ T+ +GDYI++ ++ +ERKS +D I S+ G
Sbjct: 651 ETPKVIVDMREFRSDLPCLIHKRGLEVLPLTITIGDYILTPDICVERKSISDLIGSLNSG 710
Query: 599 RLFDQVKRLKDSYPRPVVIVE 619
RL++Q +++ Y +P++++E
Sbjct: 711 RLYNQCVQMQRHYAKPILLIE 731
>emb|CAB70217.1| (AL033535) Similarity to Yeast DNA repair protein RAD16
(SW:RAD16_SCHPO)~cDNA EST EMBL:Z14466 comes from this
gene~cDNA EST yk636b12.5 comes from this gene~cDNA EST
yk86a4.3 comes from this gene~cDNA EST yk131g2.3 comes
from this gene~cDNA EST yk86a4.5>
>gi|6782250|emb|CAA93766.2| (Z69902) Similarity to Yeast
DNA repair protein RAD16 (SW:RAD16_SCHPO)~cDNA EST
EMBL:Z14466 comes from this gene~cDNA EST yk636b12.5
comes from this gene~cDNA EST yk86a4.3 comes from this
gene~cDNA EST yk131g2.3 comes from this gene~cDNA EST
yk86a4.5 c>
Length = 935
Score = 74.9 bits (181), Expect = 3e-12
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 18/133 (13%)
Query: 521 DTEKEMEREEKEERKGEREGVKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDE 580
D +M+ EE+ ER K++VD RE SE+ L T G + T+++GDYI+S
Sbjct: 672 DPRDQMDPEEELERP------KIIVDMREFNSELPTVLYTKGYNVVATTIEIGDYILSPN 725
Query: 581 VAIERKSANDFIQSIIDGRLFDQVKRLKDSYPRPVVIVE------------GQLYGIRNV 628
+AIERK+ +D QS+ GR+F Q++++ + Y V+++E G G +
Sbjct: 726 IAIERKALDDLTQSLQSGRVFKQIEQMLEHYDCTVLLIESNRKFETKIVNGGPFQGELSR 785
Query: 629 HPNAIRGAIASIV 641
H IR S++
Sbjct: 786 HCREIRSIFCSLI 798
>pir||T18568 hypothetical protein VF13D12L.2 - Caenorhabditis elegans
Length = 401
Score = 74.9 bits (181), Expect = 3e-12
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 18/133 (13%)
Query: 521 DTEKEMEREEKEERKGEREGVKVVVDSRELRSEVVKRLKTLGVKIEVKTLDVGDYIISDE 580
D +M+ EE+ ER K++VD RE SE+ L T G + T+++GDYI+S
Sbjct: 138 DPRDQMDPEEELERP------KIIVDMREFNSELPTVLYTKGYNVVATTIEIGDYILSPN 191
Query: 581 VAIERKSANDFIQSIIDGRLFDQVKRLKDSYPRPVVIVE------------GQLYGIRNV 628
+AIERK+ +D QS+ GR+F Q++++ + Y V+++E G G +
Sbjct: 192 IAIERKALDDLTQSLQSGRVFKQIEQMLEHYDCTVLLIESNRKFETKIVNGGPFQGELSR 251
Query: 629 HPNAIRGAIASIV 641
H IR S++
Sbjct: 252 HCREIRSIFCSLI 264
>dbj|BAB13422.1| (AB046816) KIAA1596 protein [Homo sapiens]
Length = 1151
Score = 74.5 bits (180), Expect = 4e-12
Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 10/216 (4%)
Query: 537 EREGVKVVVDSRELRS--EVVKRLKTL-GVKIEVKTLDVGDYIISDEVAIERKSANDFIQ 593
E +G ++V E+ S EV+ L+ + G+++EV L+ DYI+S+ + +ER+S ++ +
Sbjct: 917 EGKGTCILVGGHEITSGLEVISSLRAIHGLQVEVCPLNGCDYIVSNRMVVERRSQSEMLN 976
Query: 594 SIIDGRLFDQVKRLKDSYPRPVVIVEGQLYGI----RNVHPNAIRGAIASIVIDFGVPII 649
S+ + +Q++ L+ + R VIVE R ++ + +I G+ I+
Sbjct: 977 SVNKNKFIEQIQHLQSMFERICVIVEKDREKTGDTSRMFRRTKSYDSLLTTLIGAGIRIL 1036
Query: 650 FSSNPEETANYIFFMARREQEERRREVRVRGEKKALTLAERQRLIVESLPHVSATLAKRL 709
FSS EETA+ + ++ EQ R+ V + + S+P++S A +
Sbjct: 1037 FSSCQEETADLLKELSLVEQ---RKNVGIHVPTVVNSNKSEALQFYLSIPNISYITALNM 1093
Query: 710 LKHFGSVERVFTASVPELMKVEGIGEKIAREIRRVI 745
F SV+R+ +S+ E+ + + A EI R I
Sbjct: 1094 CHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYI 1129
>dbj|BAA31233.1| (D89592) rhlE [Vibrio alginolyticus]
Length = 411
Score = 71.8 bits (173), Expect = 3e-11
Identities = 48/192 (25%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 349 EVLKELVKEQLSKKENSKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQ 408
++ L+ L++ + S++++F + A K+V +L K GI A+ F G +Q
Sbjct: 228 DMKSSLLSHMLNENDWSQVLIFIETKHGAAKLVSQLEKRGIVAEAF--------HSGRNQ 279
Query: 409 REQKLILDSFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQ-K 467
R ++ +++ F GE LVAT V G+D+ + +V+ Y+ A V R GRTGR
Sbjct: 280 RVRQELIEKFKAGEIQYLVATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGA 339
Query: 468 PGRVVILIAQGTRDEAYYWSSKHKERQMRETIRMVSQAIKREKQLSLESYVKKDTEKEME 527
G + L+++ D + + + E + + A ++ +S+ +YV K+ K +
Sbjct: 340 QGEAISLVSKD--DFKNLCMIESRLGHLLERVEIEGFAPRKPVPISILNYVPKNKRKPQD 397
Query: 528 REEKEERKGERE 539
+ E +R+
Sbjct: 398 NRPRRENSEQRD 409
>pir||B72707 hypothetical protein APE1073 - Aeropyrum pernix (strain K1)
>gi|5104743|dbj|BAA80058.1| (AP000060) 539aa long
hypothetical protein [Aeropyrum pernix]
Length = 539
Score = 71.8 bits (173), Expect = 3e-11
Identities = 53/181 (29%), Positives = 91/181 (49%), Gaps = 27/181 (14%)
Query: 305 KKLYEEAKTGSTRASKELFLDRRMKKALALLIQAKELGIDHPKMEVLKELVKEQLSKKEN 364
+K+ E+A+ G A + + ++ RMK+ + L K+ +++LV+E+LS+
Sbjct: 373 EKILEDARRGDPTAIEAIRVNTRMKEIVQL---------SESKIRAVEKLVREELSR--G 421
Query: 365 SKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATKENDRGMSQREQKLILDSFARGEFN 424
SK+IVFT YR A ++ R G G+ +R ++ L F +
Sbjct: 422 SKVIVFTQYRRQAEEIA-----------RRTGALLLHG--GLERRVREATLAKFRALKAG 468
Query: 425 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRRGRTGRQKPGRVVIL---IAQGTRD 481
LV T+VG+EGLD+P+ ++ + S + +QR GR R G+ +L IA+GT +
Sbjct: 469 ALVVTTVGDEGLDIPDANVGILVSGTGSRRQFIQRLGRLLRPGEGKRAVLYEVIARGTGE 528
Query: 482 E 482
E
Sbjct: 529 E 529
>sp|P42305|DEAD_BACSU COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG (ATP-DEPENDENT RNA HELICASE
DEAD HOMOLOG) >gi|7446092|pir||E69613 ATP-dependent RNA
helicase deaD - Bacillus subtilis
>gi|665989|dbj|BAA11693.1| (D83026) homologous to ATP
dependent RNA helicase DeaD of E. coli; hypothetical
[Bacillus subtilis] >gi|2636457|emb|CAB15947.1| (Z99124)
ATP-dependent RNA helicase [Bacillus subtilis]
Length = 479
Score = 71.4 bits (172), Expect = 3e-11
Identities = 86/396 (21%), Positives = 166/396 (41%), Gaps = 46/396 (11%)
Query: 234 KPLAEAGLIESASADLPKKEILRAGQIINEETAKGNHDLRK--LLLFHAMALKLHHAIEL 291
K + + +S D K E+ + I+ + + K L L L + A E+
Sbjct: 97 KRIKATAVFGKSSFDKQKAELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEM 156
Query: 292 LETQGLSALRVYLKKLYEEAKTGSTRASKELFLDRRMKKALALL--IQAKELG-----ID 344
L + + +K L E T A+ +++ ++ + I+ K G I+
Sbjct: 157 LNMGFIEQVEAIIKHLPTERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIE 216
Query: 345 HPKMEVLKE----LVKEQLSKKENSKIIVFTNYRETARKVVEELTKEGIKAKRFVGQATK 400
H ++V +E L+K+ L + I+F +E ++ +EL G + G
Sbjct: 217 HAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHG---- 272
Query: 401 ENDRGMSQREQKLILDSFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSVQRR 460
GM Q ++ +++ F RGE+ LVAT V G+D+ + LV+ Y+ V R
Sbjct: 273 ----GMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRT 328
Query: 461 GRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQMRETIRMVSQAIKREKQLSLESYVKK 520
GRTGR G + +A + + ++R + + + I + + S E +K
Sbjct: 329 GRTGR-----------AGNKGKAISFVTAFEKRFLADIEEYIGFEIPKIEAPSQEEVARK 377
Query: 521 DTEKEMEREEKEERKGEREGVKVVVDSRELRSEVVKRLKTLGVKIEVKTLD-VG-----D 574
E + ++ E K ++ S EL +++K G K +++ +D VG D
Sbjct: 378 KPEFLAKLNDRPESKKDK--------SEELNKDIMKLYFNGGKKKKIRAVDFVGTIAKID 429
Query: 575 YIISDEVAIERKSANDFIQSIIDGRLFDQVKRLKDS 610
+ +D++ I N I++G+ +K +K++
Sbjct: 430 GVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNT 465
>gi|6325235 UV endonuclease; Rad1p [Saccharomyces cerevisiae]
>gi|131810|sp|P06777|RAD1_YEAST DNA REPAIR PROTEIN RAD1
>gi|73262|pir||DDBYD1 RAD1 protein - yeast (Saccharomyces
cerevisiae) >gi|172325|gb|AAA34934.1| (M15435) RAD1
protein [Saccharomyces cerevisiae]
>gi|1039455|gb|AAB68165.1| (U36624) Rad1p [Saccharomyces
cerevisiae]
Length = 1100
Score = 70.2 bits (169), Expect = 7e-11
Identities = 74/345 (21%), Positives = 150/345 (43%), Gaps = 51/345 (14%)
Query: 444 VVFYEPVPSAIRSVQRRGRTGRQKPGRVVILIAQGTRDEAYYWSSKHKERQ-----MRET 498
++ +EP S IR ++ + +V + + +E + ++ +E+ +RE
Sbjct: 712 IIMFEPDISFIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDAFTKLIREN 771
Query: 499 IRMVSQAIKREKQLSLESYVKKDTEKEMEREEKEERKGEREGVK------VVVDSRELRS 552
+ E ++ ++ + R+ G ++G V+VD+RE +
Sbjct: 772 ANLSHHFETNEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVIVDTREFNA 831
Query: 553 EVVKRLKTLGVKIEVKTLDVGDYIISDEVAIERKSANDFIQSIIDGRLFDQVKRLKDSYP 612
+ L G+++ L VGDY+I+ ++ +ERKS +D I S+ + RL +Q K++ Y
Sbjct: 832 SLPGLLYRYGIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQCKKMLKYYA 891
Query: 613 RPVVIV---EGQLYG--------------IRNVHP-------NAIRGAIASIVIDF-GVP 647
P +++ EGQ + I VHP + I+ +A +V+ F +
Sbjct: 892 YPTLLIEFDEGQSFSLEPFSERRNYKNKDISTVHPISSKLSQDEIQLKLAKLVLRFPTLK 951
Query: 648 IIFSSNPEETANYIF-FMARREQEERRREV-------------RVRGEKKALTLAERQRL 693
II+SS+P +T N I REQ + V +G K ++ +RL
Sbjct: 952 IIWSSSPLQTVNIILELKLGREQPDPSNAVILGTNKVRSDFNSTAKGLKDGDNESKFKRL 1011
Query: 694 I-VESLPHVSATLAKRLLKHFGSVERVFTASVPELMKVEGIGEKI 737
+ V + + ++ +K F ++++ + EL+ E + ++I
Sbjct: 1012 LNVPGVSKIDYFNLRKKIKSFNKLQKLSWNEINELINDEDLTDRI 1056
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.136 0.370
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253501257
Number of Sequences: 2977
Number of extensions: 10571981
Number of successful extensions: 61815
Number of sequences better than 1.0e-10: 45
Number of HSP's better than 0.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 61656
Number of HSP's gapped (non-prelim): 67
length of query: 752
length of database: 189,106,746
effective HSP length: 63
effective length of query: 689
effective length of database: 151,402,065
effective search space: 104316022785
effective search space used: 104316022785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 168 (69.9 bits)