BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0194 (PAB0194) DE:Hypothetical protein
(329 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75220 hypothetical protein PAB0194 - Pyrococcus abyssi (st... 677 0.0
pir||C71202 hypothetical protein PH1888 - Pyrococcus horikoshii ... 579 e-164
gi|11498617 conserved hypothetical protein [Archaeoglobus fulgid... 213 2e-54
sp|Q57970|Y550_METJA HYPOTHETICAL PROTEIN MJ0550 >gi|2128371|pir... 204 1e-51
pir||C69101 conserved hypothetical protein MTH1751 - Methanobact... 168 7e-41
emb|CAC11668.1| (AL445064) conserved hypothetical protein [Therm... 164 1e-39
gb|AAG20125.1| (AE005091) Vng1941c [Halobacterium sp. NRC-1] 160 3e-38
>pir||E75220 hypothetical protein PAB0194 - Pyrococcus abyssi (strain Orsay)
>gi|5457721|emb|CAB49212.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 329
Score = 677 bits (1727), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MYWIGEDNVAGEPGKVLYVILPTIGCYRYRIGKPCYMCSYPAQAPKKTSQERILSHFLEA 60
MYWIGEDNVAGEPGKVLYVILPTIGCYRYRIGKPCYMCSYPAQAPKKTSQERILSHFLEA
Sbjct: 1 MYWIGEDNVAGEPGKVLYVILPTIGCYRYRIGKPCYMCSYPAQAPKKTSQERILSHFLEA 60
Query: 61 VHKIKGKDDRFSIRIFTSGSFFDSAEVRRDTRIRIFREISKLDNVYEVVVETRSEIIRED 120
VHKIKGKDDRFSIRIFTSGSFFDSAEVRRDTRIRIFREISKLDNVYEVVVETRSEIIRED
Sbjct: 61 VHKIKGKDDRFSIRIFTSGSFFDSAEVRRDTRIRIFREISKLDNVYEVVVETRSEIIRED 120
Query: 121 WVRELAEMVEDKWFEVAIGLESANDDIADVSINKGSTFNDFVRASEIIHNAGAKVKTYLL 180
WVRELAEMVEDKWFEVAIGLESANDDIADVSINKGSTFNDFVRASEIIHNAGAKVKTYLL
Sbjct: 121 WVRELAEMVEDKWFEVAIGLESANDDIADVSINKGSTFNDFVRASEIIHNAGAKVKTYLL 180
Query: 181 LKPIFLSERDAIEDVKFSIEKAEPYTDTFSINLTNIQKGTLYESLWQRGEYRTPWLWSVV 240
LKPIFLSERDAIEDVKFSIEKAEPYTDTFSINLTNIQKGTLYESLWQRGEYRTPWLWSVV
Sbjct: 181 LKPIFLSERDAIEDVKFSIEKAEPYTDTFSINLTNIQKGTLYESLWQRGEYRTPWLWSVV 240
Query: 241 EVLRWAKKKFPHKRFLSDPVGAGSARGPHNCGGSKDKAIERAIRKFSATQDLKFLEVEEN 300
EVLRWAKKKFPHKRFLSDPVGAGSARGPHNCGGSKDKAIERAIRKFSATQDLKFLEVEEN
Sbjct: 241 EVLRWAKKKFPHKRFLSDPVGAGSARGPHNCGGSKDKAIERAIRKFSATQDLKFLEVEEN 300
Query: 301 CLEEWEYIKSEGLLDWQLLKSQVSPFSEL 329
CLEEWEYIKSEGLLDWQLLKSQVSPFSEL
Sbjct: 301 CLEEWEYIKSEGLLDWQLLKSQVSPFSEL 329
>pir||C71202 hypothetical protein PH1888 - Pyrococcus horikoshii
>gi|3258327|dbj|BAA31010.1| (AP000007) 329aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 329
Score = 579 bits (1476), Expect = e-164
Identities = 270/327 (82%), Positives = 303/327 (92%)
Query: 1 MYWIGEDNVAGEPGKVLYVILPTIGCYRYRIGKPCYMCSYPAQAPKKTSQERILSHFLEA 60
MYW+ EDNVAG+PGKVLYVILPTIGCYRYRIGKPCYMCSYPAQAP+KTSQERI +FLEA
Sbjct: 1 MYWVSEDNVAGKPGKVLYVILPTIGCYRYRIGKPCYMCSYPAQAPRKTSQERIFGYFLEA 60
Query: 61 VHKIKGKDDRFSIRIFTSGSFFDSAEVRRDTRIRIFREISKLDNVYEVVVETRSEIIRED 120
+ KIKGK+ RF IRIFTSGSFFDS+EVRR TRI+IF+EI+KLDNV+EVVVETRSEIIRE+
Sbjct: 61 IGKIKGKEGRFGIRIFTSGSFFDSSEVRRGTRIKIFQEIAKLDNVFEVVVETRSEIIREE 120
Query: 121 WVRELAEMVEDKWFEVAIGLESANDDIADVSINKGSTFNDFVRASEIIHNAGAKVKTYLL 180
WVREL E++E KWFEVA+GLE+ANDDIAD+SINKGSTF DFVRASEIIH AGAKVKTYLL
Sbjct: 121 WVRELVEIIEGKWFEVALGLETANDDIADISINKGSTFRDFVRASEIIHKAGAKVKTYLL 180
Query: 181 LKPIFLSERDAIEDVKFSIEKAEPYTDTFSINLTNIQKGTLYESLWQRGEYRTPWLWSVV 240
KPIFLSE DAIE++K SIE AEPYTDTFSIN+TNIQKGTLYE +W+RGEYRTPWLWSVV
Sbjct: 181 FKPIFLSEGDAIEEMKRSIELAEPYTDTFSINMTNIQKGTLYEKIWERGEYRTPWLWSVV 240
Query: 241 EVLRWAKKKFPHKRFLSDPVGAGSARGPHNCGGSKDKAIERAIRKFSATQDLKFLEVEEN 300
EVL+WAK+KFP KRFLSDPVGAGS RGPHNCG S+DK +ERAIRKFS TQDL++LEV +
Sbjct: 241 EVLKWAKRKFPGKRFLSDPVGAGSVRGPHNCGDSRDKPVERAIRKFSTTQDLRYLEVSGD 300
Query: 301 CLEEWEYIKSEGLLDWQLLKSQVSPFS 327
C+EEW+YI S+GLLDWQL+KSQVSPFS
Sbjct: 301 CIEEWKYIVSQGLLDWQLIKSQVSPFS 327
>gi|11498617 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429937|pir||D69376 conserved hypothetical protein
AF1012 - Archaeoglobus fulgidus
>gi|2649583|gb|AAB90230.1| (AE001034) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 312
Score = 213 bits (537), Expect = 2e-54
Identities = 131/305 (42%), Positives = 176/305 (56%), Gaps = 17/305 (5%)
Query: 3 WIGEDNVAGEPGKVLYVILPTIGCYRYRIGKPCYMCSYPAQAPKKTSQERILSHFLEAVH 62
W ++ + GE L IL T GC R CYMC Y + A + +E I + +
Sbjct: 10 WKEKERLDGEIVGCLTAILRTRGCRWDR----CYMCGYTSDAYPASEEELIQ----QVDY 61
Query: 63 KIKGKDDRFSIRIFTSGSFFDSAEVRRDTRIRIFREISKLDNVYEVVVETRSEIIREDWV 122
+ +D ++IFTSGSFFD AEV R + + + + +++VE+R E I ++ +
Sbjct: 62 VFEQLEDESVLKIFTSGSFFDDAEVPPKVRGYLLEKFQQR-GLKKLIVESRPEYITDERI 120
Query: 123 RELAEMVEDKWFEVAIGLESANDDIADVSINKGSTFNDFVRASEIIHNAGAKVKTYLLLK 182
E + EV IGLE+A+D + ++ INKG +F DF A+ + N G +VK YLLLK
Sbjct: 121 ----EPFKGVNLEVGIGLETASDRVRELCINKGFSFEDFKDAATKLRNYGFRVKCYLLLK 176
Query: 183 PIFLSERDAIEDVKFSIEKAEPYTDTFSINLTNIQKGTLYESLWQRGEYRTPWLWSVVEV 242
P FLSE +AI+D SI A+PY D FS+NLTN+QKGTL E W+ YR PWLWS VEV
Sbjct: 177 PPFLSESEAIDDAIKSIVAAKPYADVFSLNLTNVQKGTLVERFWRAKLYRPPWLWSAVEV 236
Query: 243 LRWAKKKFPHKRFLSDPVGAGSARGPHNCGGSKDKAIERAIRKFSATQDLKFLE-VEENC 301
LR A LSDPV AG RGPHNC G D + AIR+FS TQD LE + C
Sbjct: 237 LREATA--IGVEILSDPVAAGKQRGPHNC-GKCDAEVAAAIREFSLTQDTSKLEGLHCEC 293
Query: 302 LEEWE 306
+E+W+
Sbjct: 294 IEKWK 298
>sp|Q57970|Y550_METJA HYPOTHETICAL PROTEIN MJ0550 >gi|2128371|pir||F64368 conserved
hypothetical protein MJ0550 - Methanococcus jannaschii
>gi|1591255|gb|AAB98542.1| (U67504) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 365
Score = 204 bits (514), Expect = 1e-51
Identities = 119/305 (39%), Positives = 177/305 (58%), Gaps = 9/305 (2%)
Query: 14 GKVLYVILPTIGCYRYRIGKPCYMCSYPAQA-PKKTSQERILSHFLEAVHKIKGKDDR-- 70
GK L +IL T GCY + G C MCSY + P+K + E I++ F A+ K K K
Sbjct: 48 GKSLTIILRTEGCYYAKEGG-CLMCSYLMDSSPEKITAENIINQFNYAIEKYKEKIKDLK 106
Query: 71 -FSIRIFTSGSFFDSAEVRRDTRIRIFREISKLDNVYEVVVETRSEIIREDWVRELAEMV 129
FS++IFTSGSF D EV ++ R IF+++S+ DN+ EV +E+R E I ED + E+ + +
Sbjct: 107 DFSVKIFTSGSFLDDREVPKEARNYIFKKLSEFDNLKEVAIESRPEFIDEDKLNEIRKYL 166
Query: 130 EDKWFEVAIGLESANDDIADVSINKGSTFNDFVRASEIIHNAGAKVKTYLLLKPIFLSER 189
D E+ +G+ES N++I + +INKG T +RA E+ N +K YLL+KP+F++E+
Sbjct: 167 -DVNVEIGVGIESFNEEIREKAINKGITNEQIIRAIELAKNYNIGIKAYLLIKPLFITEK 225
Query: 190 DAIEDVKFSIEKA-EPYTDTFSINLTNIQKGTLYESLWQRGEYRTPWLWSVVEVLRWAKK 248
+AI D S K E S + KG++ E + + +YR P+LWS++E+L+ KK
Sbjct: 226 EAIYDSISSANKCIELGCSRISFCPATVHKGSVMEFFFNKNQYRPPFLWSIIEILKEVKK 285
Query: 249 KFPHKRFLSDPVGAGSARGPHNCGGSK-DKAIERAIRKFSATQDLKFLEVEENCLEEWE- 306
P + D G GS RG HN K +K I+ + +F+ TQD+ L VE C W
Sbjct: 286 SNPKALIMCDTSGVGSERGAHNLYNCKCNKLIKERLERFTLTQDINVLNVECECKNIWNA 345
Query: 307 YIKSE 311
YI+ E
Sbjct: 346 YIEVE 350
>pir||C69101 conserved hypothetical protein MTH1751 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622883|gb|AAB86221.1| (AE000930) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 311
Score = 168 bits (422), Expect = 7e-41
Identities = 97/293 (33%), Positives = 162/293 (55%), Gaps = 9/293 (3%)
Query: 19 VILPTIGC-YRYRIGKPCYMCSYPAQAPKKTSQERILSHFLEAVHKIKGKDDRFSIRIFT 77
+ILPT+GC + C MCSY + + + + ++ + + DDR +++IFT
Sbjct: 1 MILPTMGCSWALSESGGCNMCSYISDSFLEPVKSSEITEIFDEIMSRHEFDDRMAVKIFT 60
Query: 78 SGSFFDSAEVRRDTRIRIFREISKLDNVYEVVVETRSEIIREDWVRELAEMVEDKWFEVA 137
SGSF + E D R I +S++D V E++ E+R E I E+ +RE E+V DK EV+
Sbjct: 61 SGSFLNPEEFPEDARTHILERLSRIDAVEEIIFESRPEYIEENVLRECCELVPDKIVEVS 120
Query: 138 IGLESANDDIADVSINKGSTFNDFVRASEIIHNAG----AKVKTYLLLKPIFLSERDAIE 193
IGLE+ ++ + INKG T ++F R II K K Y+L+KP+ +SE+ AI+
Sbjct: 121 IGLETCDEKTRLLKINKGFTGSEFERGISIISGLKEEFMLKSKAYILVKPVLVSEKRAID 180
Query: 194 D-VKFSIEKAEPYTDTFSINLTNIQKGTLYESLWQRGEYRTPWLWSVVEVLRWAKKKFPH 252
+ + ++ + D S + + +GT+ E LW+RG YR PW+WS+VE++ ++
Sbjct: 181 EAISTAVYAEKTGVDRVSFCPSTVHRGTIMEDLWRRGSYRPPWIWSLVEIINRTRETVSI 240
Query: 253 KRFLSDPVGAGSARGPHNCGGSKDKAIERAIRKFSATQDLKFLEVEENCLEEW 305
+ D G G++RGP+NC ++ +++ I K + Q++ E C E W
Sbjct: 241 PSIM-DTSGFGTSRGPYNC-RKCNRDLKKLIIKSNLEQEM-VPPYECECRERW 290
>emb|CAC11668.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 350
Score = 164 bits (411), Expect = 1e-39
Identities = 118/312 (37%), Positives = 158/312 (49%), Gaps = 17/312 (5%)
Query: 3 WIGEDNVAGEPGKVLYVILPTIGCYRYRIGKPCYMCSYPAQAPKKTSQERILSHFLEAVH 62
W D + G P K VI T GC Y+ C MC Y T + L H ++ V
Sbjct: 30 WNELDRLRGYPEKTTVVIFRTRGCSWYKFSS-CSMCGYFNDTQDVTEEN--LYHQIDHVA 86
Query: 63 KIKGKDDRFSIRIFTSGSFFDSAEVRRDTRIRIFREISKLDNVYEVVVETRSEIIREDWV 122
D +++FTSGSF D E+ R + I + + +++VE+R+E IR + +
Sbjct: 87 STMNSD---VLKVFTSGSFLDPMEIPDGVRSYFYERIGQ--KISKLLVESRTEYIRPERL 141
Query: 123 RELAEMVEDKWFEVAIGLESANDDIADVSINKGSTFNDFVRASEIIHNAGAKVKTYLLLK 182
EL ++ +AIGLESAND I + SINKGS+F ++ A+ G +V+TYLL K
Sbjct: 142 EELRKIGIP--VRIAIGLESANDYIIENSINKGSSFKKYMDAASAARKYGMEVRTYLLFK 199
Query: 183 PIFLSERDAIEDVKFSIEKAEPYTDTFSINLTNIQKGTLYESLWQRGEYRTPWLWSVVEV 242
P F+SE+ AI DV SI K T SIN TNIQK TL E LW+ G YR P L+S+ +V
Sbjct: 200 PPFISEKAAIADVLDSIRKVRDVTTDVSINPTNIQKNTLVEYLWKNGLYRPPRLYSLAKV 259
Query: 243 LRWAKKKFPHKRFLSDPVGAGSARGPHNCGGSKDKAIERAIRKFSATQDLKFLEVEENCL 302
L K P +S P G RG HN + D + I K S QD+ LE L
Sbjct: 260 LIEGMKIGP--EVISYPTGGNKDRGVHN--DTFDDRLLDLIVKSSLNQDVAELEQYMESL 315
Query: 303 ---EEWEYIKSE 311
E W I+ E
Sbjct: 316 DLSEFWSMIEEE 327
>gb|AAG20125.1| (AE005091) Vng1941c [Halobacterium sp. NRC-1]
Length = 359
Score = 160 bits (400), Expect = 3e-38
Identities = 111/306 (36%), Positives = 160/306 (52%), Gaps = 16/306 (5%)
Query: 3 WIGEDNVAGEPGKVLYVILPTIGCYRYRIGKPCYMCSYPAQAPK--KTSQERILSHFLEA 60
W+ EDN L +IL T GC R G C MC Y A++ + + E +L+ E
Sbjct: 43 WLDEDNTPDGVYNSLTIILNTGGCRWARAGG-CTMCGYVAESVEGGSVAHEDLLAQIDEC 101
Query: 61 V--HKIKGKDDRFSIRIFTSGSFFDSAEVRRDTRIRIFREISKLDNVYEVVVETRSEIIR 118
+ + +G + I+I+TSGSF D EV +TR I + + + VVE+ + +
Sbjct: 102 LAHERAEGDEQAGLIKIYTSGSFLDEREVPAETRRAIAETFADRERI---VVESLPDFVD 158
Query: 119 EDWVRELAEMVEDKWFEVAIGLESANDDIADVSINKGSTFNDFVRASEIIHNAGAKVKTY 178
+ + + + + +VA+GLE+A D + +NK F DF A A A +K Y
Sbjct: 159 REKITDFTTVGLET--DVAVGLETATDRVRHDCVNKYFDFEDFEAACAEARAADAGIKAY 216
Query: 179 LLLKPIFLSERDAIEDVKFSIEK--AEPYTDTFSINLTNIQKGTLYESLWQRGEYRTPWL 236
LL+KP FL+E +AI D++ SI + A T S+N TN+Q+ T+ + L RG YR PWL
Sbjct: 217 LLMKPPFLAESEAIADMQSSIRRCAAVDGCHTVSMNPTNVQRYTMVDQLHFRGGYRPPWL 276
Query: 237 WSVVEVLRWAKKKFPHKRFLSDPVGAGSARGPHNCGGSKDKAIERAIRKFSATQDLK-FL 295
WSV EVL +SDPVG GS RG HNCG D+ +++AI+ F QD F
Sbjct: 277 WSVAEVLE--STADVDAIVVSDPVGHGSDRGAHNCGECDDR-VQKAIKDFDLRQDPSVFS 333
Query: 296 EVEENC 301
EV C
Sbjct: 334 EVACEC 339
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.137 0.413
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122788262
Number of Sequences: 2977
Number of extensions: 5004357
Number of successful extensions: 11856
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11835
Number of HSP's gapped (non-prelim): 7
length of query: 329
length of database: 189,106,746
effective HSP length: 54
effective length of query: 275
effective length of database: 156,788,448
effective search space: 43116823200
effective search space used: 43116823200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)