BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0204 (PAB0204) DE:Hypothetical protein
         (111 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75143 hypothetical protein PAB0204 - Pyrococcus abyssi (st...   227  3e-59
pir||E71182 hypothetical protein PH1738 - Pyrococcus horikoshii ...   175  1e-43

>pir||A75143 hypothetical protein PAB0204 - Pyrococcus abyssi (strain Orsay)
           >gi|5457734|emb|CAB49224.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 111
           
 Score =  227 bits (573), Expect = 3e-59
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MEDEESNSFWMRLFRKKNENGILEQEINEDVYKELKSLLMRAKPEVIGEKIVLHLPQADV 60
           MEDEESNSFWMRLFRKKNENGILEQEINEDVYKELKSLLMRAKPEVIGEKIVLHLPQADV
Sbjct: 1   MEDEESNSFWMRLFRKKNENGILEQEINEDVYKELKSLLMRAKPEVIGEKIVLHLPQADV 60

Query: 61  ILTPRRLIVKASNREKAEKILRNLHHYSQPPGLWPAYGLTYSIRKEKGRVS 111
           ILTPRRLIVKASNREKAEKILRNLHHYSQPPGLWPAYGLTYSIRKEKGRVS
Sbjct: 61  ILTPRRLIVKASNREKAEKILRNLHHYSQPPGLWPAYGLTYSIRKEKGRVS 111


>pir||E71182 hypothetical protein PH1738 - Pyrococcus horikoshii
           >gi|3258169|dbj|BAA30852.1| (AP000007) 111aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 111
           
 Score =  175 bits (440), Expect = 1e-43
 Identities = 76/111 (68%), Positives = 97/111 (86%)

Query: 1   MEDEESNSFWMRLFRKKNENGILEQEINEDVYKELKSLLMRAKPEVIGEKIVLHLPQADV 60
           MEDE+SNSFW +LFR+KNE  +LEQE+ +D Y+ELK LLMRAKPE+ GE I++HLP+AD+
Sbjct: 1   MEDEDSNSFWSKLFRRKNEEEVLEQEVTDDAYEELKRLLMRAKPEIKGENIIVHLPKADI 60

Query: 61  ILTPRRLIVKASNREKAEKILRNLHHYSQPPGLWPAYGLTYSIRKEKGRVS 111
           +L PR+L+++A  R+ AEK+LRNLH+YSQPPGLWPAYGLTYSIRKE+ R S
Sbjct: 61  VLKPRKLVIRAPTRKDAEKVLRNLHYYSQPPGLWPAYGLTYSIRKERERAS 111


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.135    0.387 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42859105
Number of Sequences: 2977
Number of extensions: 1578600
Number of successful extensions: 6933
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6931
Number of HSP's gapped (non-prelim): 2
length of query: 111
length of database: 189,106,746
effective HSP length: 54
effective length of query: 57
effective length of database: 156,788,448
effective search space: 8936941536
effective search space used: 8936941536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 159 (66.3 bits)