BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0205 (PAB0205) DE:Hypothetical protein
(242 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (st... 472 e-132
pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii ... 291 4e-78
pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii ... 129 3e-29
pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (st... 123 2e-27
pir||F71027 hypothetical protein PH1514 - Pyrococcus horikoshii ... 73 3e-12
pir||G75106 hypothetical protein PAB0444 - Pyrococcus abyssi (st... 72 7e-12
pir||A75068 hypothetical protein PAB1351 - Pyrococcus abyssi (st... 71 2e-11
pir||C75140 hypothetical protein PAB1746 - Pyrococcus abyssi (st... 69 5e-11
>pir||B75143 hypothetical protein PAB0205 - Pyrococcus abyssi (strain Orsay)
>gi|5457735|emb|CAB49225.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 472 bits (1201), Expect = e-132
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MNISEAIVFLGLLYFLVSLLVRIRKFSGSIKRFALIIIVLLGIDVFLKGVEMLYNHSLVS 60
MNISEAIVFLGLLYFLVSLLVRIRKFSGSIKRFALIIIVLLGIDVFLKGVEMLYNHSLVS
Sbjct: 1 MNISEAIVFLGLLYFLVSLLVRIRKFSGSIKRFALIIIVLLGIDVFLKGVEMLYNHSLVS 60
Query: 61 IVSSLALFGVFVILSLGLKHLEAPPMKVQQVKVSMNGENSGFVGAYIIPGSRSRIVDLIN 120
IVSSLALFGVFVILSLGLKHLEAPPMKVQQVKVSMNGENSGFVGAYIIPGSRSRIVDLIN
Sbjct: 61 IVSSLALFGVFVILSLGLKHLEAPPMKVQQVKVSMNGENSGFVGAYIIPGSRSRIVDLIN 120
Query: 121 MIKELNAPVLVFTRYPSFYRNLGENIRVVWITQASEDGIPPTKLHVIQDYAIRFARENKN 180
MIKELNAPVLVFTRYPSFYRNLGENIRVVWITQASEDGIPPTKLHVIQDYAIRFARENKN
Sbjct: 121 MIKELNAPVLVFTRYPSFYRNLGENIRVVWITQASEDGIPPTKLHVIQDYAIRFARENKN 180
Query: 181 AVIIIDCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNMLLNEFE 240
AVIIIDCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNMLLNEFE
Sbjct: 181 AVIIIDCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNMLLNEFE 240
Query: 241 PL 242
PL
Sbjct: 241 PL 242
>pir||D71182 hypothetical protein PH1737 - Pyrococcus horikoshii
>gi|3258168|dbj|BAA30851.1| (AP000007) 237aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 237
Score = 291 bits (738), Expect = 4e-78
Identities = 145/237 (61%), Positives = 187/237 (78%), Gaps = 7/237 (2%)
Query: 13 LYFLVSLLVRIRKFSGSIKRFALIIIVLLGIDVFLKGVEM----LYNHSLVSIVSSLALF 68
+Y L +L+RI K+S K+ A+++++ L + LK +E+ + ++ +V SL +F
Sbjct: 1 MYLLTFILIRINKYSDKAKKSAILVLLFLSLGAILKILEIADPSVKMDYIIQLVYSLTVF 60
Query: 69 GVFVILSLGLKHLEAPPMKV--QQVKVSMNGENSG-FVGAYIIPGSRSRIVDLINMIKEL 125
G FV LS +K LE PP K+ NG + VGAY++ GSRSRIVDLINMI+EL
Sbjct: 61 GAFVALSFYIKFLETPPSLTVHHSTKLPKNGGSEPKLVGAYLVSGSRSRIVDLINMIREL 120
Query: 126 NAPVLVFTRYPSFYRNLGENIRVVWITQASEDGIPPTKLHVIQDYAIRFARENKNAVIII 185
NAP+LVFTRYP+FY++LGENI+V+WITQASEDGIPPTKLHVIQDYAI+FA+ENK AV+II
Sbjct: 121 NAPILVFTRYPTFYQDLGENIKVIWITQASEDGIPPTKLHVIQDYAIKFAKENKYAVVII 180
Query: 186 DCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNMLLNEFEPL 242
DC+EYLLLYNEF+SVFKFLA+LKD+L+MMNSAL+LAVD+KAL+ KYY +LLNEFEPL
Sbjct: 181 DCVEYLLLYNEFASVFKFLASLKDYLIMMNSALVLAVDEKALDEKYYTLLLNEFEPL 237
>pir||D71215 hypothetical protein PH1988 - Pyrococcus horikoshii
>gi|3258432|dbj|BAA31115.1| (AP000007) 239aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 239
Score = 129 bits (321), Expect = 3e-29
Identities = 80/240 (33%), Positives = 127/240 (52%), Gaps = 17/240 (7%)
Query: 7 IVFLGLLYFLVSLLVRIRKFSGSIKRFALIIIVLLGIDVFLKGVEMLYNHSLVSIVSSLA 66
IVFL L + V++++ K L + V ++G+++L + +
Sbjct: 12 IVFLLFLILSIYAFVKLKRSPIEFKSVFTKSFTFLFLGVLIRGIDLLQAFVYIPYYEEIH 71
Query: 67 LFGVFVILSLGLKHLEAPPMKVQQVKVSMNGENSGFVGAYIIPGSRSRIV----DLINMI 122
+ G +IL G+ + MK N E F I G + + +++++I
Sbjct: 72 IIGHIIILG-GIGYTYVEFMK--------NLERFFFPEEPIFKGEGAYLARSYEEVLSLI 122
Query: 123 KELNAPVLVFTRYPSFYRNLGENIRVVWITQASEDGIPPTKLHVIQDYAIRFARENKNAV 182
K N VLV TR P+ YRNL RV+W+T + E G+ PT LHVI D IRF +EN+ +
Sbjct: 123 K--NKRVLVITRNPTKYRNLAS--RVIWVTSSGEKGVHPTSLHVILDLCIRFIKENRGGI 178
Query: 183 IIIDCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNMLLNEFEPL 242
++IDC+E+L LYN F SVFKFL LKD+++M +I+ V+ A++ + ++L EF PL
Sbjct: 179 VLIDCVEFLTLYNGFPSVFKFLTGLKDNVLMRGGKIIIMVNPNAIDKRDLSLLEREFTPL 238
>pir||G75029 hypothetical protein PAB1160 - Pyrococcus abyssi (strain Orsay)
>gi|5459191|emb|CAB50677.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 242
Score = 123 bits (306), Expect = 2e-27
Identities = 77/240 (32%), Positives = 129/240 (53%), Gaps = 17/240 (7%)
Query: 7 IVFLGLLYFLVSLLVRIRKFSGSIKRFALIIIVLLGIDVFLKGVEMLYNHSLVSIVSSLA 66
I+F+ + + +++RK K + + L I ++ +++LY V S +
Sbjct: 12 IIFVIFAFLSYYVFLKLRKSPEEFKSMFIRGFIFLLIAAIVRAIDVLYLFIKVPYYSWIH 71
Query: 67 LFGVFVILSLGLKHLEAPPMKVQQVKVSMNGENSGFVGAYIIPGSRSRIV----DLINMI 122
+ G ++++ G+ + V+ N E F ++ + +++ ++
Sbjct: 72 IGGHILVMA-GITYT--------YVEFIQNLERFFFPKEPTFREEKAFLATSFEEVLPLM 122
Query: 123 KELNAPVLVFTRYPSFYRNLGENIRVVWITQASEDGIPPTKLHVIQDYAIRFARENKNAV 182
K N VL TR P R L + R++W+T + E+G+PPT LHV+ D +IRFA EN+ V
Sbjct: 123 KGRN--VLAITRDPD--RFLNKASRIIWVTSSGENGVPPTSLHVLLDLSIRFANENRGGV 178
Query: 183 IIIDCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNMLLNEFEPL 242
II+DCLE+L+LYN F+SVFKFL NLKD++ + L++ V KAL + NML EF P+
Sbjct: 179 IILDCLEFLILYNGFNSVFKFLTNLKDNITIRGGILVIIVAPKALGEREMNMLKREFRPI 238
>pir||F71027 hypothetical protein PH1514 - Pyrococcus horikoshii
>gi|3257939|dbj|BAA30622.1| (AP000006) 310aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 310
Score = 73.0 bits (176), Expect = 3e-12
Identities = 64/200 (32%), Positives = 108/200 (54%), Gaps = 30/200 (15%)
Query: 35 LIIIVLLGIDVFL------KGVEMLYNHSLV-SIVSSLALFGVF-----VILSLGLKH-L 81
+II V L + F+ K +++L +L+ ++VS+L + F ++ + + + +
Sbjct: 103 IIIFVALSLTGFMMLMKKEKNIKILGALTLILALVSALGEYKSFFRYLSAVIGISIGYVI 162
Query: 82 EAPPMKVQQVKVSMNGENSGFVGAYIIPGSRSRIVDLINMIKELNAPVLVFTRYPSFYRN 141
A +V VK+ ++ E I PG I+ L ++ ++L LVF+R P +N
Sbjct: 163 VAGISEVDLVKIKLSEEFE------IKPG----IMFLESVPRDLLKVALVFSRRPP-EKN 211
Query: 142 LGENIRVVWITQAS-EDGIPPTKLHVIQDYAIRFARENKNAVIIIDCLEYLLLYNEFSSV 200
G + WIT+ ++ I PT LH I D A++ + K ++IIDCLEYL+L N F V
Sbjct: 212 DG---KWFWITKLEGKNNIGPTDLHKILDLAVKHIK--KGGIVIIDCLEYLILENGFERV 266
Query: 201 FKFLANLKDHLVMMNSALIL 220
KFLA L+D+ +M NS +I+
Sbjct: 267 LKFLAQLRDYAIMYNSTVII 286
>pir||G75106 hypothetical protein PAB0444 - Pyrococcus abyssi (strain Orsay)
>gi|5458079|emb|CAB49568.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 319
Score = 71.8 bits (173), Expect = 7e-12
Identities = 64/235 (27%), Positives = 117/235 (49%), Gaps = 40/235 (17%)
Query: 7 IVFLGLLYFLVSLLVRIRKFSGSIKRFALIIIVLLGIDVFLKGVEMLYNHSLVSIVSSLA 66
+V + L+ L+++++ +K +K ++ +++L+ + VF + L + V I ++L
Sbjct: 110 LVIVSLMLTLLAIMLAFKK----VKLTSVFLVLLVLVSVFGYYSD-LAKYLFVIIATTL- 163
Query: 67 LFGVFVILSLGL---KHLEAPPMKVQQVKVSMNGENSGFVGAYIIPGSRSRIVDLINMIK 123
G F+I+ + K + +PP +++K+ G + A IP +
Sbjct: 164 --GYFLIVETKIDLRKTILSPPSTGEELKLK-----PGVIFAETIP-------------E 203
Query: 124 ELNAPVLVFTRYPSFYRNLGENIRVVWITQASEDG---IPPTKLHVIQDYAIRFARENKN 180
++ LVF+R P G+ R W+T+ I PT L I A+ + + K
Sbjct: 204 DILKVALVFSRKP------GKGERWFWVTKLKSSDVNTIEPTNLPKILSLAVDYLK--KK 255
Query: 181 AVIIIDCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNML 235
V++IDCL+YL+L N F SV KF+A+L+D+ VM S++I+ + L K ML
Sbjct: 256 GVVVIDCLDYLILENGFESVIKFMAHLRDYAVMHGSSVIILGPLEGLSDKEKVML 310
>pir||A75068 hypothetical protein PAB1351 - Pyrococcus abyssi (strain Orsay)
>gi|5458951|emb|CAB50438.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 355
Score = 70.6 bits (170), Expect = 2e-11
Identities = 32/92 (34%), Positives = 58/92 (62%), Gaps = 2/92 (2%)
Query: 150 WITQASEDG--IPPTKLHVIQDYAIRFARENKNAVIIIDCLEYLLLYNEFSSVFKFLANL 207
++T+A EDG + PT L + + + ++ + +N +++IDCLEY +YN F + K+LA L
Sbjct: 259 FVTRAREDGNVLSPTNLPRMLELSKKYFQSVENGIVVIDCLEYFSIYNGFENTLKYLAML 318
Query: 208 KDHLVMMNSALILAVDQKALETKYYNMLLNEF 239
+D+ V+ N LI+ D+ K +++L+N F
Sbjct: 319 RDYAVLHNGTLIIVTDRMLWNDKEWSLLMNMF 350
>pir||C75140 hypothetical protein PAB1746 - Pyrococcus abyssi (strain Orsay)
>gi|5458347|emb|CAB49836.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 248
Score = 69.1 bits (166), Expect = 5e-11
Identities = 61/247 (24%), Positives = 115/247 (45%), Gaps = 17/247 (6%)
Query: 3 ISEAIVFLGLLYFLVSLLVRIRKFSGSI-----KRFALIIIVLLGIDVFLKGVEMLYNHS 57
++E + F+ ++ L++ +RK+ ++ R++L+ I ++ + + + +
Sbjct: 12 LTEFVSFVAFT-IIILLILFVRKYLENLFGKRAVRYSLVGIAVIWFGYLVNVLNDIIPYK 70
Query: 58 LVSIVSSLALFGVFVILSLGLKHLEAP-PMKVQQVKVSMNGENSGFVGAYIIPGSRSRIV 116
+ IV + IL+L +L +KV+ ++ GE Y + I
Sbjct: 71 TLKIVDDVLESIGIAILALTTFYLARGFSLKVRPKAINHPGEPIPSGAYYTTNLNGQEIQ 130
Query: 117 DLINMIKELNAPVLVFTRYPSFYRNLGENIRVVWITQAS-EDGIPPTKLHVIQDYAIRFA 175
L++ K L TR P ++ LG I +W++ E I PTKL + Y + +
Sbjct: 131 KLLSGKK-----ALAITRSPKIWKELG--IPYIWVSNVEGEKSIEPTKLAPLMHYIL--S 181
Query: 176 RENKNAVIIIDCLEYLLLYNEFSSVFKFLANLKDHLVMMNSALILAVDQKALETKYYNML 235
++N +I+D L+YLLLYN KFL +LKD+++ N LIL + +L + +
Sbjct: 182 NLDENTFVILDSLDYLLLYNGEKPTMKFLLSLKDNVLAKNGGLILLANPGSLPQTVWGTI 241
Query: 236 LNEFEPL 242
EF+ L
Sbjct: 242 QREFQEL 248
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.144 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79175780
Number of Sequences: 2977
Number of extensions: 2968379
Number of successful extensions: 9643
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9634
Number of HSP's gapped (non-prelim): 8
length of query: 242
length of database: 189,106,746
effective HSP length: 54
effective length of query: 188
effective length of database: 156,788,448
effective search space: 29476228224
effective search space used: 29476228224
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 164 (68.3 bits)