BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0206 (PAB0206) DE:Hypothetical protein
         (443 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75143 hypothetical protein PAB0206 - Pyrococcus abyssi (st...   876  0.0
pir||G71182 hypothetical protein PH1740 - Pyrococcus horikoshii ...   449  e-125

>pir||C75143 hypothetical protein PAB0206 - Pyrococcus abyssi (strain Orsay)
           >gi|5457736|emb|CAB49226.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 443
           
 Score =  876 bits (2238), Expect = 0.0
 Identities = 443/443 (100%), Positives = 443/443 (100%)

Query: 1   MISFSKSHSLENKRYKLEKRIILVLIMKRKLIGIPLVLIFLGVLAFYTSAESEDNEVFFY 60
           MISFSKSHSLENKRYKLEKRIILVLIMKRKLIGIPLVLIFLGVLAFYTSAESEDNEVFFY
Sbjct: 1   MISFSKSHSLENKRYKLEKRIILVLIMKRKLIGIPLVLIFLGVLAFYTSAESEDNEVFFY 60

Query: 61  NSFAMVERTITLELDKGYNEVPIEEITGDNSFGIPLIVSGDVSLVGIRGEYRSYIFGIPV 120
           NSFAMVERTITLELDKGYNEVPIEEITGDNSFGIPLIVSGDVSLVGIRGEYRSYIFGIPV
Sbjct: 61  NSFAMVERTITLELDKGYNEVPIEEITGDNSFGIPLIVSGDVSLVGIRGEYRSYIFGIPV 120

Query: 121 GSEVIVTLKSKVQISGILRGLQDNYLVVERGSQKVLINPGEISYISVSKSSRESNSVILY 180
           GSEVIVTLKSKVQISGILRGLQDNYLVVERGSQKVLINPGEISYISVSKSSRESNSVILY
Sbjct: 121 GSEVIVTLKSKVQISGILRGLQDNYLVVERGSQKVLINPGEISYISVSKSSRESNSVILY 180

Query: 181 ADEAGRHNITLIYRVENVKWSSTYRLILKDEEGVLEGLAIIENPSKARLKGKGYLVSGDI 240
           ADEAGRHNITLIYRVENVKWSSTYRLILKDEEGVLEGLAIIENPSKARLKGKGYLVSGDI
Sbjct: 181 ADEAGRHNITLIYRVENVKWSSTYRLILKDEEGVLEGLAIIENPSKARLKGKGYLVSGDI 240

Query: 241 GGTYPVYLAMTKQEAQGERYIKEEHITLFPIGNVEVNGESKVAIKFLTESLEWERSYLYE 300
           GGTYPVYLAMTKQEAQGERYIKEEHITLFPIGNVEVNGESKVAIKFLTESLEWERSYLYE
Sbjct: 241 GGTYPVYLAMTKQEAQGERYIKEEHITLFPIGNVEVNGESKVAIKFLTESLEWERSYLYE 300

Query: 301 SWPYQEEGPIYEVIRFKTDKPLPPGNVEVYREEDGKLILIRLSSIQQKASGDYVEIKLGR 360
           SWPYQEEGPIYEVIRFKTDKPLPPGNVEVYREEDGKLILIRLSSIQQKASGDYVEIKLGR
Sbjct: 301 SWPYQEEGPIYEVIRFKTDKPLPPGNVEVYREEDGKLILIRLSSIQQKASGDYVEIKLGR 360

Query: 361 EYELKGTTKVIQRVKEGDKTKYKVEITIENLGNEPREVMIKHHKIGRITYSSLNPIEETA 420
           EYELKGTTKVIQRVKEGDKTKYKVEITIENLGNEPREVMIKHHKIGRITYSSLNPIEETA
Sbjct: 361 EYELKGTTKVIQRVKEGDKTKYKVEITIENLGNEPREVMIKHHKIGRITYSSLNPIEETA 420

Query: 421 DYVILEVKVNPGGKEVVNLEYET 443
           DYVILEVKVNPGGKEVVNLEYET
Sbjct: 421 DYVILEVKVNPGGKEVVNLEYET 443


>pir||G71182 hypothetical protein PH1740 - Pyrococcus horikoshii
           >gi|3258171|dbj|BAA30854.1| (AP000007) 415aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 415
           
 Score =  449 bits (1142), Expect = e-125
 Identities = 210/412 (50%), Positives = 302/412 (72%), Gaps = 5/412 (1%)

Query: 31  LIGIPLVLIFLGVLAFYTSAESEDNEVFFYNSFAMVERTITLELDKGYNEVPIEEITGDN 90
           LI   L++ F  V      A+ E+N + FY  FA++E  +TLEL  GYNE+PI     + 
Sbjct: 8   LIAAILIVSFAVVHYPLGQADIENNIILFYEPFAVIEENVTLELKAGYNEIPI-----NC 62

Query: 91  SFGIPLIVSGDVSLVGIRGEYRSYIFGIPVGSEVIVTLKSKVQISGILRGLQDNYLVVER 150
           + G PL++S +V  +G++  Y   IFG+P+GSEV + L++K+QISG+L+G ++ +L+V+R
Sbjct: 63  NLGTPLVLSKEVDFIGLKDVYSQDIFGVPLGSEVNIALQNKLQISGVLKGYKEGFLLVQR 122

Query: 151 GSQKVLINPGEISYISVSKSSRESNSVILYADEAGRHNITLIYRVENVKWSSTYRLILKD 210
           G+  VL+NP EI+YISVS+       +ILY +++G HN+TLI RV  +KW   Y LILK+
Sbjct: 123 GNSLVLVNPNEIAYISVSRIPESPRKIILYTEKSGEHNLTLICRVNGIKWDVNYYLILKE 182

Query: 211 EEGVLEGLAIIENPSKARLKGKGYLVSGDIGGTYPVYLAMTKQEAQGERYIKEEHITLFP 270
            +  ++G A IENP +   +GKGYLV+GDIG      + +  + A+   YIK+EHITLFP
Sbjct: 183 NKAKVQGFATIENPLQLEFRGKGYLVTGDIGEYEGSKVTIKPEVAEPSSYIKQEHITLFP 242

Query: 271 IGNVEVNGESKVAIKFLTESLEWERSYLYESWPYQEEGPIYEVIRFKTDKPLPPGNVEVY 330
           +G++E+  ESK  IK + E+++WER YLYESWPY+EEGP+YE IRFKT+ PLPPGNV+++
Sbjct: 243 LGSIEIEKESKTTIKIVEENVKWERGYLYESWPYREEGPVYEFIRFKTEMPLPPGNVKIF 302

Query: 331 REEDGKLILIRLSSIQQKASGDYVEIKLGREYELKGTTKVIQRVKEGDKTKYKVEITIEN 390
           RE +G L+LI  + I+QKA+GD+VEIKLGREYELKG T+V+Q +K   KT+YKVEI++EN
Sbjct: 303 REHNGSLVLISQNRIEQKAAGDFVEIKLGREYELKGKTRVLQVLKSNGKTRYKVEISLEN 362

Query: 391 LGNEPREVMIKHHKIGRITYSSLNPIEETADYVILEVKVNPGGKEVVNLEYE 442
           LG++PREV+IKH+K G I YS++ PIEETA+YV+++VKV P  ++ + +EYE
Sbjct: 363 LGDKPREVLIKHYKAGVILYSTIKPIEETANYVLMKVKVEPKSEKKIIIEYE 414


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.138    0.380 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161855537
Number of Sequences: 2977
Number of extensions: 6953079
Number of successful extensions: 12479
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12476
Number of HSP's gapped (non-prelim): 2
length of query: 443
length of database: 189,106,746
effective HSP length: 60
effective length of query: 383
effective length of database: 153,197,526
effective search space: 58674652458
effective search space used: 58674652458
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 166 (69.1 bits)