BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0207 (gph) DE:PHOSPHOGLYCOLATE PHOSPHATASE
(219 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75143 phosphoglycolate phosphatase PAB0207 - Pyrococcus ab... 442 e-123
pir||B71183 hypothetical protein PH1743 - Pyrococcus horikoshii ... 367 e-101
dbj|BAB07306.1| (AP001519) phosphoglycolate phosphatase [Bacillu... 71 1e-11
gb|AAG18730.1| (AE004977) Vng0102c [Halobacterium sp. NRC-1] 68 9e-11
>pir||E75143 phosphoglycolate phosphatase PAB0207 - Pyrococcus abyssi (strain
Orsay) >gi|5457738|emb|CAB49228.1| (AJ248284)
PHOSPHOGLYCOLATE PHOSPHATASE [Pyrococcus abyssi]
Length = 219
Score = 442 bits (1125), Expect = e-123
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MKIKGIIFDVDETLLYYEGYSLREWYENVGLPAMKKLGLVVDWETFRKMAKGELPRSYVE 60
MKIKGIIFDVDETLLYYEGYSLREWYENVGLPAMKKLGLVVDWETFRKMAKGELPRSYVE
Sbjct: 1 MKIKGIIFDVDETLLYYEGYSLREWYENVGLPAMKKLGLVVDWETFRKMAKGELPRSYVE 60
Query: 61 KFNFDHVEFWKALDRANREYRERLLREGKVHVFDDVYALKELKKLGIKLAAVSNASQDNT 120
KFNFDHVEFWKALDRANREYRERLLREGKVHVFDDVYALKELKKLGIKLAAVSNASQDNT
Sbjct: 61 KFNFDHVEFWKALDRANREYRERLLREGKVHVFDDVYALKELKKLGIKLAAVSNASQDNT 120
Query: 121 ELVLKAFDLLKYFDVVYGKDYSYLDGVKPNPYLINKALRALNIKPEEAILVGDSELDVRA 180
ELVLKAFDLLKYFDVVYGKDYSYLDGVKPNPYLINKALRALNIKPEEAILVGDSELDVRA
Sbjct: 121 ELVLKAFDLLKYFDVVYGKDYSYLDGVKPNPYLINKALRALNIKPEEAILVGDSELDVRA 180
Query: 181 GKNARVKVIQIVREKKVEGADMYIKTLWELVDLIKKDVL 219
GKNARVKVIQIVREKKVEGADMYIKTLWELVDLIKKDVL
Sbjct: 181 GKNARVKVIQIVREKKVEGADMYIKTLWELVDLIKKDVL 219
>pir||B71183 hypothetical protein PH1743 - Pyrococcus horikoshii
>gi|3258174|dbj|BAA30857.1| (AP000007) 218aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 218
Score = 367 bits (932), Expect = e-101
Identities = 173/213 (81%), Positives = 198/213 (92%)
Query: 3 IKGIIFDVDETLLYYEGYSLREWYENVGLPAMKKLGLVVDWETFRKMAKGELPRSYVEKF 62
IK IIFDVDETL+YYEGYSLREWYE VGLPAMK+LG++VDWE FRKMA+GELPRSYVEKF
Sbjct: 2 IKAIIFDVDETLVYYEGYSLREWYEKVGLPAMKELGVIVDWEIFRKMARGELPRSYVEKF 61
Query: 63 NFDHVEFWKALDRANREYRERLLREGKVHVFDDVYALKELKKLGIKLAAVSNASQDNTEL 122
+HV+FWKALD ANR+YRE LL+EGKVH F DV ALKE+K LGIKLAAVSNASQDNTEL
Sbjct: 62 QINHVKFWKALDEANRKYREELLKEGKVHTFKDVEALKEIKNLGIKLAAVSNASQDNTEL 121
Query: 123 VLKAFDLLKYFDVVYGKDYSYLDGVKPNPYLINKALRALNIKPEEAILVGDSELDVRAGK 182
VL+AFDLLKYFDVVYGKDY+YLDGVKPNPYLINKAL+ALN++P+EAILVGDSELD+ AGK
Sbjct: 122 VLRAFDLLKYFDVVYGKDYTYLDGVKPNPYLINKALKALNVEPKEAILVGDSELDIIAGK 181
Query: 183 NARVKVIQIVREKKVEGADMYIKTLWELVDLIK 215
A+++V+QIVREK+VEGAD+YI +LWELVD +K
Sbjct: 182 RAKLRVVQIVREKRVEGADVYINSLWELVDKLK 214
>dbj|BAB07306.1| (AP001519) phosphoglycolate phosphatase [Bacillus halodurans]
Length = 215
Score = 71.0 bits (171), Expect = 1e-11
Identities = 63/238 (26%), Positives = 108/238 (44%), Gaps = 52/238 (21%)
Query: 1 MKIKGIIFDVDETLL----------------YYEG-YSLREWYENVGLPAMKKLGLVVDW 43
M+I ++FD+D TL+ YY G Y ++ E +G P
Sbjct: 1 MEINTVLFDLDGTLINTNELIISSFLHTFETYYPGKYGRKDAIECIGPPLT--------- 51
Query: 44 ETFRKMAKGELPRSYVEKFNFDHVEFWKALDRANREYRERLLREGKVHVFDDVY-ALKEL 102
++F+++ + E + N + ++L V ++ VY +K L
Sbjct: 52 DSFKRLDPERVE------------EMVATYRKHNHAHHDKL-----VEPYEGVYETVKTL 94
Query: 103 KKLGIKLAAVSNASQDNTELVLKAFDLLKYFDVVYGKDYSYLDGVKPNPYLINKALRALN 162
+ G KLA V+ ++ LK F L ++FDV+ D ++ VKPNP + KA+ AL
Sbjct: 95 HEQGFKLAIVTTKIRETAMKGLKLFGLDEFFDVIVALDD--VENVKPNPEPLEKAMNALG 152
Query: 163 IKPEEAILVGDSELDVRAGKNARVKVIQIVREKKVE------GADMYIKTLWELVDLI 214
K EE I+VGD+ D+ GKNA VK + + E D ++++ +L+D++
Sbjct: 153 AKKEETIMVGDNSHDILGGKNAGVKTAVVGYAIRGEDYVRQFDPDYVLRSMPDLLDIV 210
>gb|AAG18730.1| (AE004977) Vng0102c [Halobacterium sp. NRC-1]
Length = 218
Score = 67.9 bits (163), Expect = 9e-11
Identities = 46/150 (30%), Positives = 75/150 (49%), Gaps = 10/150 (6%)
Query: 42 DWETFRKMAKGELPRSYVE---KFNFDHVEFWKALDRANREYRERLLREGKVHVFDDVYA 98
D E M G P++ + ++ +FW DRA E + +REG+ ++DD
Sbjct: 40 DPEDVEAMTIGATPKTVGDVCSRYGISPKDFWPERDRALTEAQRDEVREGRKTLYDD--- 96
Query: 99 LKELKKLGIKLAAVSNASQDNTELVLKAFDLLKYFDVVYGKD--YSYLDGVKPNPYLINK 156
L L L + + VS+ Q + VL F + F YG++ L+ KPN + I++
Sbjct: 97 LDTLHDLNVNMGIVSSNQQATVDFVLDHFGVRDLFGAAYGREPTIQSLERRKPNSHYIDR 156
Query: 157 ALRALNIKPEEAILVGDSELDVRAGKNARV 186
AL L+ + A+ VGD+E D+RA +NA +
Sbjct: 157 ALADLD--ADTALFVGDNESDIRAAENAGI 184
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81637073
Number of Sequences: 2977
Number of extensions: 3383557
Number of successful extensions: 8572
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8567
Number of HSP's gapped (non-prelim): 4
length of query: 219
length of database: 189,106,746
effective HSP length: 54
effective length of query: 165
effective length of database: 156,788,448
effective search space: 25870093920
effective search space used: 25870093920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)