BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0207 (gph) DE:PHOSPHOGLYCOLATE PHOSPHATASE
         (219 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75143 phosphoglycolate phosphatase PAB0207 - Pyrococcus ab...   442  e-123
pir||B71183 hypothetical protein PH1743 - Pyrococcus horikoshii ...   367  e-101
dbj|BAB07306.1| (AP001519) phosphoglycolate phosphatase [Bacillu...    71  1e-11
gb|AAG18730.1| (AE004977) Vng0102c [Halobacterium sp. NRC-1]           68  9e-11

>pir||E75143 phosphoglycolate phosphatase PAB0207 - Pyrococcus abyssi  (strain
           Orsay) >gi|5457738|emb|CAB49228.1| (AJ248284)
           PHOSPHOGLYCOLATE PHOSPHATASE [Pyrococcus abyssi]
           Length = 219
           
 Score =  442 bits (1125), Expect = e-123
 Identities = 219/219 (100%), Positives = 219/219 (100%)

Query: 1   MKIKGIIFDVDETLLYYEGYSLREWYENVGLPAMKKLGLVVDWETFRKMAKGELPRSYVE 60
           MKIKGIIFDVDETLLYYEGYSLREWYENVGLPAMKKLGLVVDWETFRKMAKGELPRSYVE
Sbjct: 1   MKIKGIIFDVDETLLYYEGYSLREWYENVGLPAMKKLGLVVDWETFRKMAKGELPRSYVE 60

Query: 61  KFNFDHVEFWKALDRANREYRERLLREGKVHVFDDVYALKELKKLGIKLAAVSNASQDNT 120
           KFNFDHVEFWKALDRANREYRERLLREGKVHVFDDVYALKELKKLGIKLAAVSNASQDNT
Sbjct: 61  KFNFDHVEFWKALDRANREYRERLLREGKVHVFDDVYALKELKKLGIKLAAVSNASQDNT 120

Query: 121 ELVLKAFDLLKYFDVVYGKDYSYLDGVKPNPYLINKALRALNIKPEEAILVGDSELDVRA 180
           ELVLKAFDLLKYFDVVYGKDYSYLDGVKPNPYLINKALRALNIKPEEAILVGDSELDVRA
Sbjct: 121 ELVLKAFDLLKYFDVVYGKDYSYLDGVKPNPYLINKALRALNIKPEEAILVGDSELDVRA 180

Query: 181 GKNARVKVIQIVREKKVEGADMYIKTLWELVDLIKKDVL 219
           GKNARVKVIQIVREKKVEGADMYIKTLWELVDLIKKDVL
Sbjct: 181 GKNARVKVIQIVREKKVEGADMYIKTLWELVDLIKKDVL 219


>pir||B71183 hypothetical protein PH1743 - Pyrococcus horikoshii
           >gi|3258174|dbj|BAA30857.1| (AP000007) 218aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 218
           
 Score =  367 bits (932), Expect = e-101
 Identities = 173/213 (81%), Positives = 198/213 (92%)

Query: 3   IKGIIFDVDETLLYYEGYSLREWYENVGLPAMKKLGLVVDWETFRKMAKGELPRSYVEKF 62
           IK IIFDVDETL+YYEGYSLREWYE VGLPAMK+LG++VDWE FRKMA+GELPRSYVEKF
Sbjct: 2   IKAIIFDVDETLVYYEGYSLREWYEKVGLPAMKELGVIVDWEIFRKMARGELPRSYVEKF 61

Query: 63  NFDHVEFWKALDRANREYRERLLREGKVHVFDDVYALKELKKLGIKLAAVSNASQDNTEL 122
             +HV+FWKALD ANR+YRE LL+EGKVH F DV ALKE+K LGIKLAAVSNASQDNTEL
Sbjct: 62  QINHVKFWKALDEANRKYREELLKEGKVHTFKDVEALKEIKNLGIKLAAVSNASQDNTEL 121

Query: 123 VLKAFDLLKYFDVVYGKDYSYLDGVKPNPYLINKALRALNIKPEEAILVGDSELDVRAGK 182
           VL+AFDLLKYFDVVYGKDY+YLDGVKPNPYLINKAL+ALN++P+EAILVGDSELD+ AGK
Sbjct: 122 VLRAFDLLKYFDVVYGKDYTYLDGVKPNPYLINKALKALNVEPKEAILVGDSELDIIAGK 181

Query: 183 NARVKVIQIVREKKVEGADMYIKTLWELVDLIK 215
            A+++V+QIVREK+VEGAD+YI +LWELVD +K
Sbjct: 182 RAKLRVVQIVREKRVEGADVYINSLWELVDKLK 214


>dbj|BAB07306.1| (AP001519) phosphoglycolate phosphatase [Bacillus halodurans]
           Length = 215
           
 Score = 71.0 bits (171), Expect = 1e-11
 Identities = 63/238 (26%), Positives = 108/238 (44%), Gaps = 52/238 (21%)

Query: 1   MKIKGIIFDVDETLL----------------YYEG-YSLREWYENVGLPAMKKLGLVVDW 43
           M+I  ++FD+D TL+                YY G Y  ++  E +G P           
Sbjct: 1   MEINTVLFDLDGTLINTNELIISSFLHTFETYYPGKYGRKDAIECIGPPLT--------- 51

Query: 44  ETFRKMAKGELPRSYVEKFNFDHVEFWKALDRANREYRERLLREGKVHVFDDVY-ALKEL 102
           ++F+++    +             E      + N  + ++L     V  ++ VY  +K L
Sbjct: 52  DSFKRLDPERVE------------EMVATYRKHNHAHHDKL-----VEPYEGVYETVKTL 94

Query: 103 KKLGIKLAAVSNASQDNTELVLKAFDLLKYFDVVYGKDYSYLDGVKPNPYLINKALRALN 162
            + G KLA V+   ++     LK F L ++FDV+   D   ++ VKPNP  + KA+ AL 
Sbjct: 95  HEQGFKLAIVTTKIRETAMKGLKLFGLDEFFDVIVALDD--VENVKPNPEPLEKAMNALG 152

Query: 163 IKPEEAILVGDSELDVRAGKNARVKVIQIVREKKVE------GADMYIKTLWELVDLI 214
            K EE I+VGD+  D+  GKNA VK   +    + E        D  ++++ +L+D++
Sbjct: 153 AKKEETIMVGDNSHDILGGKNAGVKTAVVGYAIRGEDYVRQFDPDYVLRSMPDLLDIV 210


>gb|AAG18730.1| (AE004977) Vng0102c [Halobacterium sp. NRC-1]
           Length = 218
           
 Score = 67.9 bits (163), Expect = 9e-11
 Identities = 46/150 (30%), Positives = 75/150 (49%), Gaps = 10/150 (6%)

Query: 42  DWETFRKMAKGELPRSYVE---KFNFDHVEFWKALDRANREYRERLLREGKVHVFDDVYA 98
           D E    M  G  P++  +   ++     +FW   DRA  E +   +REG+  ++DD   
Sbjct: 40  DPEDVEAMTIGATPKTVGDVCSRYGISPKDFWPERDRALTEAQRDEVREGRKTLYDD--- 96

Query: 99  LKELKKLGIKLAAVSNASQDNTELVLKAFDLLKYFDVVYGKD--YSYLDGVKPNPYLINK 156
           L  L  L + +  VS+  Q   + VL  F +   F   YG++     L+  KPN + I++
Sbjct: 97  LDTLHDLNVNMGIVSSNQQATVDFVLDHFGVRDLFGAAYGREPTIQSLERRKPNSHYIDR 156

Query: 157 ALRALNIKPEEAILVGDSELDVRAGKNARV 186
           AL  L+   + A+ VGD+E D+RA +NA +
Sbjct: 157 ALADLD--ADTALFVGDNESDIRAAENAGI 184


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.405 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81637073
Number of Sequences: 2977
Number of extensions: 3383557
Number of successful extensions: 8572
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8567
Number of HSP's gapped (non-prelim): 4
length of query: 219
length of database: 189,106,746
effective HSP length: 54
effective length of query: 165
effective length of database: 156,788,448
effective search space: 25870093920
effective search space used: 25870093920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)