BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0208 (PAB0208) DE:Hypothetical protein
(201 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75143 hypothetical protein PAB0208 - Pyrococcus abyssi (st... 392 e-108
pir||C71183 hypothetical protein PH1744 - Pyrococcus horikoshii ... 360 7e-99
gi|11498896 A. fulgidus predicted coding region AF1298 [Archaeog... 100 1e-20
pir||D69038 hypothetical protein MTH1288 - Methanobacterium ther... 100 2e-20
gb|AAG20049.1| (AE005085) Vng1843c [Halobacterium sp. NRC-1] 100 2e-20
pir||B71240 hypothetical protein PH0180 - Pyrococcus horikoshii ... 69 5e-11
>pir||F75143 hypothetical protein PAB0208 - Pyrococcus abyssi (strain Orsay)
>gi|5457739|emb|CAB49229.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 201
Score = 392 bits (996), Expect = e-108
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MGEELDMLLDVLGNETRRRILLLLTKRPYFVSELSQELGVGQKAVLEHLRILEEAGLIES 60
MGEELDMLLDVLGNETRRRILLLLTKRPYFVSELSQELGVGQKAVLEHLRILEEAGLIES
Sbjct: 1 MGEELDMLLDVLGNETRRRILLLLTKRPYFVSELSQELGVGQKAVLEHLRILEEAGLIES 60
Query: 61 RIEKIPRGRPRKYYMIKRGLRLEILLTPTLFGSEMYEPKDIRKSPEYEQARELIKSTEPI 120
RIEKIPRGRPRKYYMIKRGLRLEILLTPTLFGSEMYEPKDIRKSPEYEQARELIKSTEPI
Sbjct: 61 RIEKIPRGRPRKYYMIKRGLRLEILLTPTLFGSEMYEPKDIRKSPEYEQARELIKSTEPI 120
Query: 121 DVKMRELAEFLHELDERIKEIIEEKRELEEVKILVETYIENVMRRMSEENRQTLEKIFKE 180
DVKMRELAEFLHELDERIKEIIEEKRELEEVKILVETYIENVMRRMSEENRQTLEKIFKE
Sbjct: 121 DVKMRELAEFLHELDERIKEIIEEKRELEEVKILVETYIENVMRRMSEENRQTLEKIFKE 180
Query: 181 IERILPKDYARRIKEKFIENI 201
IERILPKDYARRIKEKFIENI
Sbjct: 181 IERILPKDYARRIKEKFIENI 201
>pir||C71183 hypothetical protein PH1744 - Pyrococcus horikoshii
>gi|3258175|dbj|BAA30858.1| (AP000007) 253aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 253
Score = 360 bits (914), Expect = 7e-99
Identities = 179/201 (89%), Positives = 194/201 (96%)
Query: 1 MGEELDMLLDVLGNETRRRILLLLTKRPYFVSELSQELGVGQKAVLEHLRILEEAGLIES 60
MGEEL LLDVLGNETRRRIL LLTKRPYFVSELSQELGVGQKAVLEHLRILEEAGLIES
Sbjct: 53 MGEELSKLLDVLGNETRRRILFLLTKRPYFVSELSQELGVGQKAVLEHLRILEEAGLIES 112
Query: 61 RIEKIPRGRPRKYYMIKRGLRLEILLTPTLFGSEMYEPKDIRKSPEYEQARELIKSTEPI 120
RIEKIPRGRPRKYYMIKRGLRLEILLTPTLFGSEMYEP++IRKSPEYEQARELIKS EPI
Sbjct: 113 RIEKIPRGRPRKYYMIKRGLRLEILLTPTLFGSEMYEPREIRKSPEYEQARELIKSVEPI 172
Query: 121 DVKMRELAEFLHELDERIKEIIEEKRELEEVKILVETYIENVMRRMSEENRQTLEKIFKE 180
D+KM+ELAEFLHELD+RIKE+IEEKRELEEVKILVETYIENVMRR+SEEN++ ++K+FK+
Sbjct: 173 DIKMKELAEFLHELDDRIKELIEEKRELEEVKILVETYIENVMRRISEENKEIVKKVFKD 232
Query: 181 IERILPKDYARRIKEKFIENI 201
IE ILP +YA+RIKEKFIENI
Sbjct: 233 IEEILPPEYAKRIKEKFIENI 253
>gi|11498896 A. fulgidus predicted coding region AF1298 [Archaeoglobus fulgidus]
>gi|7483595|pir||A69412 hypothetical protein AF1298 -
Archaeoglobus fulgidus >gi|2649283|gb|AAB89950.1|
(AE001014) A. fulgidus predicted coding region AF1298
[Archaeoglobus fulgidus]
Length = 233
Score = 100 bits (246), Expect = 1e-20
Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 1 MGEELDMLLDVLGNETRRRILLLLTKRPYFVSELSQELGVGQKAVLEHLRILEEAGLIES 60
M E + ++DVLGNE+RRRIL LL+++P +VSE+S LG+ KAVLEHL L +AG++ S
Sbjct: 11 MDIEAETIMDVLGNESRRRILQLLSRKPCYVSEISYYLGMAPKAVLEHLDKLVKAGIVSS 70
Query: 61 RIEKIPRGRPRKYYMIKRGLRLEILLTPTLFGSEMYEPKDIRKSPEYEQARELIKSTEPI 120
GR ++YY I R LRLE++++P FG+E IR S Y+ +
Sbjct: 71 ----FEEGR-KRYYYIPRSLRLEVVISPHKFGAE------IRDSENYD-----------L 108
Query: 121 DVKMRELAEFLHELDERIKEIIEEKRELEEVKILVETYIENVMRRMSEENRQTLEKIFKE 180
M+E+ + ++ E I E +V ++ V +S Q +E++ E
Sbjct: 109 PSLMKEIRNEFNMIERLKAESISEIYRALKVAEDLQRRFSRVQSTLSMRFNQFVERMLNE 168
Query: 181 IERILPKDYARRI 193
IER++ D R +
Sbjct: 169 IERVVSDDLERLV 181
>pir||D69038 hypothetical protein MTH1288 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622396|gb|AAB85770.1| (AE000894)
unknown [Methanobacterium thermoautotrophicum]
Length = 167
Score = 99.8 bits (245), Expect = 2e-20
Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 6/162 (3%)
Query: 3 EELDMLLDVLGNETRRRILLLLTKRPYFVSELSQELGVGQKAVLEHLRILEEAGLIESRI 62
+ ++++LDV+G +TRR I+ LL + P FVSE+S+EL +GQKA++EHLR +EEAG++ S
Sbjct: 10 QNMEVILDVMGCKTRRDIINLLREEPRFVSEISRELDIGQKAIIEHLRAMEEAGILSSFF 69
Query: 63 EKIPRGRPRKYYMIKRGLRLEILLTPTLFGSEMYEPKDIRKS-PEYEQARELIKSTEPID 121
KI RGRPRKYY I R + + I + F ++ + RK P ++ L+ I
Sbjct: 70 RKIERGRPRKYYDISRDIHVSITINRNTFRVDVMDDLLNRKQLPPGDEWSRLLNIENKIK 129
Query: 122 VKMRELAEFLHELDERIKEIIEEKRELEEVKILVETYIENVM 163
E E EL I+ KR E+ +L+E I M
Sbjct: 130 KGQWEAVE---ELKNLIRLYDHLKRRAED--LLMEAEIRRKM 166
>gb|AAG20049.1| (AE005085) Vng1843c [Halobacterium sp. NRC-1]
Length = 218
Score = 99.8 bits (245), Expect = 2e-20
Identities = 61/181 (33%), Positives = 108/181 (58%), Gaps = 11/181 (6%)
Query: 8 LLDVLGNETRRRILLLLTKRPYFVSELSQELGVGQKAVLEHLRILEEAGLIESRIEKIPR 67
LLD+LGNE RRRIL LL ++P +V+E+S+ +GV KAV++HL+ L++AGL+ESR++
Sbjct: 6 LLDLLGNENRRRILQLLARKPCYVTEISEYIGVSPKAVIDHLQQLDDAGLVESRVD---- 61
Query: 68 GRPRKYYMIKRGLRLEILLTPTLFGSEMYEPKDIRKSPEYEQARELIKSTEPIDVKMREL 127
+ RKY+ I LRLE+ L+P +G++ P S + + AR S + ++ R+
Sbjct: 62 DQRRKYFHIAENLRLEVQLSPFGYGAKSAYP----ASTDLDLARCQYVS---VRIEERDS 114
Query: 128 AEFLHELDERIKEIIEEKRELEEVKILVETYIENVMRRMSEENRQTLEKIFKEIERILPK 187
++EL ++KE+ E +REL + V+ + +V + + ++++ ++ L
Sbjct: 115 NAEVNELAAKLKELNELERELSMAQRWVQGQLADVQAALGDAIGDGPDRLYADVLAALAD 174
Query: 188 D 188
D
Sbjct: 175 D 175
>pir||B71240 hypothetical protein PH0180 - Pyrococcus horikoshii
>gi|3256566|dbj|BAA29249.1| (AP000001) 241aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 68.7 bits (165), Expect = 5e-11
Identities = 64/202 (31%), Positives = 104/202 (50%), Gaps = 28/202 (13%)
Query: 11 VLGNETRRRILLLLTKRPYFVSELSQELGVGQKAVLEHLRILEEAGLIESRIEKIPR--G 68
+LGN+ RR +L LT + S LS + V AV +HL+I+E G++ES EK R G
Sbjct: 11 ILGNKVRRDLLSHLTCTECYFSLLSSRVTVSSTAVAKHLKIMEREGILES-YEKEERFIG 69
Query: 69 RPRKYYMIKRGLRLEILLTPTLF---GSEMYEPK--DIR-------KSPE--YEQARELI 114
+KYY I + LTP +F G E+ EPK D+R KSPE E +
Sbjct: 70 PTKKYYKISVAKSYVVTLTPDMFWFKGFELGEPKLEDVRVELSKLDKSPEGLNNLLSEFL 129
Query: 115 KSTEPIDVKMR---ELAEFLHELDERIK-EIIEEKRELEEVKIL------VETYIENVMR 164
K+ ++ ++ L + +EL ++IK E +++ ++ ++ IL E +E +
Sbjct: 130 KANRELEKILKAFISLEAYRNELIKKIKDEYLKKIGDMTQLAILHYILLNGEASVEELSD 189
Query: 165 RMSEENRQTLEKIFKEIERILP 186
R++ + R+ EKI E+ R +P
Sbjct: 190 RLNLKEREVREKII-EMGRFVP 210
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.371
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68628158
Number of Sequences: 2977
Number of extensions: 2869394
Number of successful extensions: 20460
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20444
Number of HSP's gapped (non-prelim): 6
length of query: 201
length of database: 189,106,746
effective HSP length: 58
effective length of query: 143
effective length of database: 154,394,500
effective search space: 22078413500
effective search space used: 22078413500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)