BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0209 (PAB0209) DE:Hypothetical protein
         (163 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75143 hypothetical protein PAB0209 - Pyrococcus abyssi (st...   331  3e-90
pir||E71183 hypothetical protein PH1746 - Pyrococcus horikoshii ...   258  3e-68
sp|O27802|YH74_METTH HYPOTHETICAL PROTEIN MJ1774 >gi|7435081|pir...   123  1e-27
gb|AAF91268.1|AF230199_10 (AF230199) conserved hypothetical prot...   111  6e-24
sp|Q58040|Y623_METJA HYPOTHETICAL PROTEIN MJ0623 >gi|2128412|pir...   107  9e-23
gi|11499762 conserved hypothetical protein [Archaeoglobus fulgid...    80  1e-14
gi|11498405 conserved hypothetical protein [Archaeoglobus fulgid...    76  3e-13

>pir||H75143 hypothetical protein PAB0209 - Pyrococcus abyssi (strain Orsay)
           >gi|5457741|emb|CAB49231.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 163
           
 Score =  331 bits (840), Expect = 3e-90
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNA 60
           MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNA
Sbjct: 1   MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNA 60

Query: 61  DRIDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKIT 120
           DRIDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKIT
Sbjct: 61  DRIDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKIT 120

Query: 121 AMGKEVVLLNPGSPTLPRMSEPTVAILNVGRDIDVTFHVVWKI 163
           AMGKEVVLLNPGSPTLPRMSEPTVAILNVGRDIDVTFHVVWKI
Sbjct: 121 AMGKEVVLLNPGSPTLPRMSEPTVAILNVGRDIDVTFHVVWKI 163


>pir||E71183 hypothetical protein PH1746 - Pyrococcus horikoshii
           >gi|3258177|dbj|BAA30860.1| (AP000007) 163aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 163
           
 Score =  258 bits (652), Expect = 3e-68
 Identities = 118/163 (72%), Positives = 140/163 (85%)

Query: 1   MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNA 60
           ML+GVLSDTHFPKAYFP+++L FF EK V YIIHAGDITE+ LLD+LE+VAPVIAVKGNA
Sbjct: 1   MLVGVLSDTHFPKAYFPEKILEFFREKNVAYIIHAGDITERSLLDMLENVAPVIAVKGNA 60

Query: 61  DRIDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKIT 120
           D + LPEEE L ++ K +LV+HGHNFL+LDTQNL YK LEE+ADI+IFGHTHRPYY K+ 
Sbjct: 61  DILKLPEEEILNIRDKRVLVIHGHNFLTLDTQNLLYKGLEEEADIVIFGHTHRPYYAKLK 120

Query: 121 AMGKEVVLLNPGSPTLPRMSEPTVAILNVGRDIDVTFHVVWKI 163
            MGKE+ LLNPGSPTLPRMSEPT AILN+G  ++V F+ VW +
Sbjct: 121 YMGKEITLLNPGSPTLPRMSEPTFAILNIGESVEVKFYNVWML 163


>sp|O27802|YH74_METTH HYPOTHETICAL PROTEIN MJ1774 >gi|7435081|pir||H69103 conserved
           hypothetical protein MTH1774 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622904|gb|AAB86240.1| (AE000932) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 172
           
 Score =  123 bits (305), Expect = 1e-27
 Identities = 67/160 (41%), Positives = 102/160 (62%), Gaps = 12/160 (7%)

Query: 1   MLIGVLSDTHFPK--AYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKG 58
           MLIGV+SDTH P   +  P+ V   F +  V+ I+HAGD+T   +L  LE++APV  V+G
Sbjct: 1   MLIGVISDTHIPDRASEIPEAVFDAFRD--VELILHAGDLTSPDILTELETLAPVECVQG 58

Query: 59  NADR---IDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPY 115
           N DR   I+ P     +++   + ++HG  +   DTQ L Y  LE  AD+LI GHTH+P+
Sbjct: 59  NMDRHYGIETPRSRLFEIESFRVGLIHGEVYPRGDTQQLRYLGLELGADVLISGHTHQPF 118

Query: 116 YNKITAMGKEVVLLNPGSPTLPRMSEPTVAILNV-GRDID 154
             ++    +++VLLNPGSPT+PR+++P+V +L + G  +D
Sbjct: 119 IREL----EDMVLLNPGSPTVPRLTDPSVMVLRIDGEKLD 154


>gb|AAF91268.1|AF230199_10 (AF230199) conserved hypothetical protein [Methanococcus
           maripaludis]
           Length = 163
           
 Score =  111 bits (274), Expect = 6e-24
 Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 5/152 (3%)

Query: 1   MLIGVLSDTHFPKAY--FPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKG 58
           M+IG++SDTH P+     P  +   F +  V  IIH GD+T + +L+ L+ ++ ++ V G
Sbjct: 1   MIIGIISDTHIPERAKKLPKEIFEHFSD--VDLIIHCGDVTSESVLNELKKISEILVVSG 58

Query: 59  NADRIDLPEEETLKVQGKLILVLHGHNFLSL-DTQNLTYKALEEDADILIFGHTHRPYYN 117
           N D ++ P+E  L ++   I ++HG+      DT  + Y  LE++ D+LI GHTH P   
Sbjct: 59  NMDYMNYPKEHELNIENFKIGIIHGNQIHPRGDTLKMKYLCLEKNWDVLISGHTHVPMIK 118

Query: 118 KITAMGKEVVLLNPGSPTLPRMSEPTVAILNV 149
           ++ A  K+++LLNPGSPT+PR    T+  L +
Sbjct: 119 ELHAENKKILLLNPGSPTVPRYPLKTIMKLKI 150


>sp|Q58040|Y623_METJA HYPOTHETICAL PROTEIN MJ0623 >gi|2128412|pir||G64377 hypothetical
           protein MJ0623 - Methanococcus jannaschii
           >gi|1591334|gb|AAB98618.1| (U67510) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 192
           
 Score =  107 bits (264), Expect = 9e-23
 Identities = 62/150 (41%), Positives = 88/150 (58%), Gaps = 5/150 (3%)

Query: 1   MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNA 60
           MLIGV+SDTH     F      F E   V  IIH GD+T+K++LD L+ +A V+AVKGN 
Sbjct: 34  MLIGVISDTHLYDRAFELPKAVFDEFSNVDLIIHCGDVTDKEILDSLKDLAKVVAVKGNM 93

Query: 61  DRIDLPEEETLKVQGKLILVLHGH-NFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKI 119
           D ++LP +E L++    I V+HG   +   D   L     E   D+LI GHTH P+ +  
Sbjct: 94  DYLNLPRKEILEINDIKIGVIHGDVVYPRGDRLKLRLLGKEMGVDVLISGHTHTPFIDDC 153

Query: 120 TAMGKEVVLLNPGSPTLPRMSEPTVAILNV 149
               ++++LLNPGSPT+PR    ++  L+V
Sbjct: 154 ----RDILLLNPGSPTVPRCPLKSIMKLSV 179


>gi|11499762 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7428105|pir||D69522 conserved hypothetical protein
           AF2180 - Archaeoglobus fulgidus
           >gi|2648343|gb|AAB89070.1| (AE000954) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 175
           
 Score = 80.4 bits (195), Expect = 1e-14
 Identities = 54/160 (33%), Positives = 88/160 (54%), Gaps = 13/160 (8%)

Query: 6   LSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNAD---- 61
           ++DTH  +   P++++   E     +++HAGD    ++         + AV GN+D    
Sbjct: 7   VADTHLKEWNLPEKLIELMEG--ADFVVHAGDFESYKVYKKFSDYE-LYAVAGNSDDDKI 63

Query: 62  RIDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKITA 121
           + +L EE   +V+G    ++H  NF++    +L YKA+E   D+L+FGH HR    ++  
Sbjct: 64  KEELDEELVFEVEGVRFGLVHKGNFIN-QFHDLGYKAMELGVDVLVFGHLHRFVLEEV-- 120

Query: 122 MGKEVVLLNPGSPTLPRMSEPTVAILNV-GRDIDVTFHVV 160
            GK  +L+ PGSPT PRMS  + A + V G  +DV +HVV
Sbjct: 121 RGK--LLVCPGSPTQPRMSVASCAEIAVDGSKVDVKYHVV 158


>gi|11498405 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483056|pir||G69349 conserved hypothetical protein
           AF0799 - Archaeoglobus fulgidus
           >gi|2649807|gb|AAB90439.1| (AE001049) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 178
           
 Score = 75.7 bits (183), Expect = 3e-13
 Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 11/139 (7%)

Query: 1   MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKY--IIHAGDITEKQLLDLLESVAP-VIAVK 57
           M I +  DTH P+    D + R F +  V +  ++  GD+T +++L   E VA  VIAV+
Sbjct: 4   MRILIFGDTHIPER--ADEIPREFTDYLVDFDMVVITGDLTSERVLRFAERVAESVIAVR 61

Query: 58  GNADRIDLPEEETLKVQGKLILVLHGHN-FLSLDTQNLTYKALEEDADILIFGHTHRPYY 116
           GN D + LP     +V+G    V+HGH  +   + + L   ALE D D+LI GHTH P  
Sbjct: 62  GNMDDLPLPHSAKFRVEGLSFGVVHGHQVYPRGNREQLEQIALEMDVDVLISGHTHLP-- 119

Query: 117 NKITAMGKEVVLLNPGSPT 135
                     +LLNPGS T
Sbjct: 120 ---DVYRGAKILLNPGSMT 135


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.142    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63945960
Number of Sequences: 2977
Number of extensions: 2515039
Number of successful extensions: 6185
Number of sequences better than 1.0e-10: 7
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6173
Number of HSP's gapped (non-prelim): 7
length of query: 163
length of database: 189,106,746
effective HSP length: 52
effective length of query: 111
effective length of database: 157,985,422
effective search space: 17536381842
effective search space used: 17536381842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)