BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0209 (PAB0209) DE:Hypothetical protein
(163 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75143 hypothetical protein PAB0209 - Pyrococcus abyssi (st... 331 3e-90
pir||E71183 hypothetical protein PH1746 - Pyrococcus horikoshii ... 258 3e-68
sp|O27802|YH74_METTH HYPOTHETICAL PROTEIN MJ1774 >gi|7435081|pir... 123 1e-27
gb|AAF91268.1|AF230199_10 (AF230199) conserved hypothetical prot... 111 6e-24
sp|Q58040|Y623_METJA HYPOTHETICAL PROTEIN MJ0623 >gi|2128412|pir... 107 9e-23
gi|11499762 conserved hypothetical protein [Archaeoglobus fulgid... 80 1e-14
gi|11498405 conserved hypothetical protein [Archaeoglobus fulgid... 76 3e-13
>pir||H75143 hypothetical protein PAB0209 - Pyrococcus abyssi (strain Orsay)
>gi|5457741|emb|CAB49231.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 163
Score = 331 bits (840), Expect = 3e-90
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNA 60
MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNA
Sbjct: 1 MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNA 60
Query: 61 DRIDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKIT 120
DRIDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKIT
Sbjct: 61 DRIDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKIT 120
Query: 121 AMGKEVVLLNPGSPTLPRMSEPTVAILNVGRDIDVTFHVVWKI 163
AMGKEVVLLNPGSPTLPRMSEPTVAILNVGRDIDVTFHVVWKI
Sbjct: 121 AMGKEVVLLNPGSPTLPRMSEPTVAILNVGRDIDVTFHVVWKI 163
>pir||E71183 hypothetical protein PH1746 - Pyrococcus horikoshii
>gi|3258177|dbj|BAA30860.1| (AP000007) 163aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 163
Score = 258 bits (652), Expect = 3e-68
Identities = 118/163 (72%), Positives = 140/163 (85%)
Query: 1 MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNA 60
ML+GVLSDTHFPKAYFP+++L FF EK V YIIHAGDITE+ LLD+LE+VAPVIAVKGNA
Sbjct: 1 MLVGVLSDTHFPKAYFPEKILEFFREKNVAYIIHAGDITERSLLDMLENVAPVIAVKGNA 60
Query: 61 DRIDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKIT 120
D + LPEEE L ++ K +LV+HGHNFL+LDTQNL YK LEE+ADI+IFGHTHRPYY K+
Sbjct: 61 DILKLPEEEILNIRDKRVLVIHGHNFLTLDTQNLLYKGLEEEADIVIFGHTHRPYYAKLK 120
Query: 121 AMGKEVVLLNPGSPTLPRMSEPTVAILNVGRDIDVTFHVVWKI 163
MGKE+ LLNPGSPTLPRMSEPT AILN+G ++V F+ VW +
Sbjct: 121 YMGKEITLLNPGSPTLPRMSEPTFAILNIGESVEVKFYNVWML 163
>sp|O27802|YH74_METTH HYPOTHETICAL PROTEIN MJ1774 >gi|7435081|pir||H69103 conserved
hypothetical protein MTH1774 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622904|gb|AAB86240.1| (AE000932) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 172
Score = 123 bits (305), Expect = 1e-27
Identities = 67/160 (41%), Positives = 102/160 (62%), Gaps = 12/160 (7%)
Query: 1 MLIGVLSDTHFPK--AYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKG 58
MLIGV+SDTH P + P+ V F + V+ I+HAGD+T +L LE++APV V+G
Sbjct: 1 MLIGVISDTHIPDRASEIPEAVFDAFRD--VELILHAGDLTSPDILTELETLAPVECVQG 58
Query: 59 NADR---IDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPY 115
N DR I+ P +++ + ++HG + DTQ L Y LE AD+LI GHTH+P+
Sbjct: 59 NMDRHYGIETPRSRLFEIESFRVGLIHGEVYPRGDTQQLRYLGLELGADVLISGHTHQPF 118
Query: 116 YNKITAMGKEVVLLNPGSPTLPRMSEPTVAILNV-GRDID 154
++ +++VLLNPGSPT+PR+++P+V +L + G +D
Sbjct: 119 IREL----EDMVLLNPGSPTVPRLTDPSVMVLRIDGEKLD 154
>gb|AAF91268.1|AF230199_10 (AF230199) conserved hypothetical protein [Methanococcus
maripaludis]
Length = 163
Score = 111 bits (274), Expect = 6e-24
Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 5/152 (3%)
Query: 1 MLIGVLSDTHFPKAY--FPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKG 58
M+IG++SDTH P+ P + F + V IIH GD+T + +L+ L+ ++ ++ V G
Sbjct: 1 MIIGIISDTHIPERAKKLPKEIFEHFSD--VDLIIHCGDVTSESVLNELKKISEILVVSG 58
Query: 59 NADRIDLPEEETLKVQGKLILVLHGHNFLSL-DTQNLTYKALEEDADILIFGHTHRPYYN 117
N D ++ P+E L ++ I ++HG+ DT + Y LE++ D+LI GHTH P
Sbjct: 59 NMDYMNYPKEHELNIENFKIGIIHGNQIHPRGDTLKMKYLCLEKNWDVLISGHTHVPMIK 118
Query: 118 KITAMGKEVVLLNPGSPTLPRMSEPTVAILNV 149
++ A K+++LLNPGSPT+PR T+ L +
Sbjct: 119 ELHAENKKILLLNPGSPTVPRYPLKTIMKLKI 150
>sp|Q58040|Y623_METJA HYPOTHETICAL PROTEIN MJ0623 >gi|2128412|pir||G64377 hypothetical
protein MJ0623 - Methanococcus jannaschii
>gi|1591334|gb|AAB98618.1| (U67510) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 192
Score = 107 bits (264), Expect = 9e-23
Identities = 62/150 (41%), Positives = 88/150 (58%), Gaps = 5/150 (3%)
Query: 1 MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNA 60
MLIGV+SDTH F F E V IIH GD+T+K++LD L+ +A V+AVKGN
Sbjct: 34 MLIGVISDTHLYDRAFELPKAVFDEFSNVDLIIHCGDVTDKEILDSLKDLAKVVAVKGNM 93
Query: 61 DRIDLPEEETLKVQGKLILVLHGH-NFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKI 119
D ++LP +E L++ I V+HG + D L E D+LI GHTH P+ +
Sbjct: 94 DYLNLPRKEILEINDIKIGVIHGDVVYPRGDRLKLRLLGKEMGVDVLISGHTHTPFIDDC 153
Query: 120 TAMGKEVVLLNPGSPTLPRMSEPTVAILNV 149
++++LLNPGSPT+PR ++ L+V
Sbjct: 154 ----RDILLLNPGSPTVPRCPLKSIMKLSV 179
>gi|11499762 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7428105|pir||D69522 conserved hypothetical protein
AF2180 - Archaeoglobus fulgidus
>gi|2648343|gb|AAB89070.1| (AE000954) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 175
Score = 80.4 bits (195), Expect = 1e-14
Identities = 54/160 (33%), Positives = 88/160 (54%), Gaps = 13/160 (8%)
Query: 6 LSDTHFPKAYFPDRVLRFFEEKKVKYIIHAGDITEKQLLDLLESVAPVIAVKGNAD---- 61
++DTH + P++++ E +++HAGD ++ + AV GN+D
Sbjct: 7 VADTHLKEWNLPEKLIELMEG--ADFVVHAGDFESYKVYKKFSDYE-LYAVAGNSDDDKI 63
Query: 62 RIDLPEEETLKVQGKLILVLHGHNFLSLDTQNLTYKALEEDADILIFGHTHRPYYNKITA 121
+ +L EE +V+G ++H NF++ +L YKA+E D+L+FGH HR ++
Sbjct: 64 KEELDEELVFEVEGVRFGLVHKGNFIN-QFHDLGYKAMELGVDVLVFGHLHRFVLEEV-- 120
Query: 122 MGKEVVLLNPGSPTLPRMSEPTVAILNV-GRDIDVTFHVV 160
GK +L+ PGSPT PRMS + A + V G +DV +HVV
Sbjct: 121 RGK--LLVCPGSPTQPRMSVASCAEIAVDGSKVDVKYHVV 158
>gi|11498405 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483056|pir||G69349 conserved hypothetical protein
AF0799 - Archaeoglobus fulgidus
>gi|2649807|gb|AAB90439.1| (AE001049) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 178
Score = 75.7 bits (183), Expect = 3e-13
Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 1 MLIGVLSDTHFPKAYFPDRVLRFFEEKKVKY--IIHAGDITEKQLLDLLESVAP-VIAVK 57
M I + DTH P+ D + R F + V + ++ GD+T +++L E VA VIAV+
Sbjct: 4 MRILIFGDTHIPER--ADEIPREFTDYLVDFDMVVITGDLTSERVLRFAERVAESVIAVR 61
Query: 58 GNADRIDLPEEETLKVQGKLILVLHGHN-FLSLDTQNLTYKALEEDADILIFGHTHRPYY 116
GN D + LP +V+G V+HGH + + + L ALE D D+LI GHTH P
Sbjct: 62 GNMDDLPLPHSAKFRVEGLSFGVVHGHQVYPRGNREQLEQIALEMDVDVLISGHTHLP-- 119
Query: 117 NKITAMGKEVVLLNPGSPT 135
+LLNPGS T
Sbjct: 120 ---DVYRGAKILLNPGSMT 135
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63945960
Number of Sequences: 2977
Number of extensions: 2515039
Number of successful extensions: 6185
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6173
Number of HSP's gapped (non-prelim): 7
length of query: 163
length of database: 189,106,746
effective HSP length: 52
effective length of query: 111
effective length of database: 157,985,422
effective search space: 17536381842
effective search space used: 17536381842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)