BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0211 (PAB0211) DE:Hypothetical protein
(192 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75144 hypothetical protein PAB0211 - Pyrococcus abyssi (st... 372 e-102
pir||G71183 hypothetical protein PH1748 - Pyrococcus horikoshii ... 335 2e-91
gi|11499701 inosine monophosphate dehydrogenase (guaB-2) [Archae... 144 6e-34
emb|CAC11254.1| (AL445063) conserved hypothetical protein [Therm... 90 2e-17
gb|AAG19320.1| (AE005027) inosine-5'-monophosphate dehydrogenase... 70 2e-11
>pir||B75144 hypothetical protein PAB0211 - Pyrococcus abyssi (strain Orsay)
>gi|5457743|emb|CAB49233.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 192
Score = 372 bits (946), Expect = e-102
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MVIIPRPIDPRDIKKIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60
MVIIPRPIDPRDIKKIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL
Sbjct: 1 MVIIPRPIDPRDIKKIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60
Query: 61 LECQKTRITAKSIMSSPIISAKPEDKISDIVKVMEKYNISQVPVIVKDKVVGAITERLLV 120
LECQKTRITAKSIMSSPIISAKPEDKISDIVKVMEKYNISQVPVIVKDKVVGAITERLLV
Sbjct: 61 LECQKTRITAKSIMSSPIISAKPEDKISDIVKVMEKYNISQVPVIVKDKVVGAITERLLV 120
Query: 121 RKSLEDEDIYSKRAVDIMEEPFPVVSEDEDLEVIKYLLEEHPAVIVQGKNGKPIGIITRS 180
RKSLEDEDIYSKRAVDIMEEPFPVVSEDEDLEVIKYLLEEHPAVIVQGKNGKPIGIITRS
Sbjct: 121 RKSLEDEDIYSKRAVDIMEEPFPVVSEDEDLEVIKYLLEEHPAVIVQGKNGKPIGIITRS 180
Query: 181 DIFKLGRETKGE 192
DIFKLGRETKGE
Sbjct: 181 DIFKLGRETKGE 192
>pir||G71183 hypothetical protein PH1748 - Pyrococcus horikoshii
>gi|3258179|dbj|BAA30862.1| (AP000007) 192aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 192
Score = 335 bits (850), Expect = 2e-91
Identities = 169/192 (88%), Positives = 181/192 (94%)
Query: 1 MVIIPRPIDPRDIKKIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60
MVIIP+P+DPRDIKKIRK LGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL
Sbjct: 1 MVIIPKPVDPRDIKKIRKALGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRAL 60
Query: 61 LECQKTRITAKSIMSSPIISAKPEDKISDIVKVMEKYNISQVPVIVKDKVVGAITERLLV 120
LECQKTRITAK+IMSSPIIS EDKI +V++MEKYNISQVPV+ KDK+VGAITERLLV
Sbjct: 61 LECQKTRITAKNIMSSPIISVSSEDKIEKVVRLMEKYNISQVPVMEKDKIVGAITERLLV 120
Query: 121 RKSLEDEDIYSKRAVDIMEEPFPVVSEDEDLEVIKYLLEEHPAVIVQGKNGKPIGIITRS 180
RKSLEDEDIYSK+A DIMEEPFP+VSEDEDLEVIKYLLE+H AVIVQG+NGKPIGIITR
Sbjct: 121 RKSLEDEDIYSKKAKDIMEEPFPLVSEDEDLEVIKYLLEDHQAVIVQGRNGKPIGIITRF 180
Query: 181 DIFKLGRETKGE 192
DIFKL RETKGE
Sbjct: 181 DIFKLSRETKGE 192
>gi|11499701 inosine monophosphate dehydrogenase (guaB-2) [Archaeoglobus
fulgidus] >gi|7429341|pir||F69514 yhcV homolog 2 -
Archaeoglobus fulgidus >gi|2648410|gb|AAB89133.1|
(AE000958) inosine monophosphate dehydrogenase (guaB-2)
[Archaeoglobus fulgidus]
Length = 183
Score = 144 bits (360), Expect = 6e-34
Identities = 76/175 (43%), Positives = 118/175 (67%), Gaps = 4/175 (2%)
Query: 12 DIKKIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRALLECQKTRITAK 71
+I++ RK+LG++Q++LA GV+Q IA++EAGK DP+LS ++LR L E + R+ A+
Sbjct: 7 EIRRKRKKLGLSQKKLAELVGVSQPLIARIEAGKFDPKLSLVKKMLRVLEEIEGGRVEAR 66
Query: 72 SIMSSPIISAKPEDKISDIVKVMEKYNISQVPVIVKDKVVGAITERLLVRKSLE-DEDIY 130
+M+SP+I P D + + ++M + ISQ+PV+ DK+VG +TE +VR LE E
Sbjct: 67 VVMNSPVIFVSPSDSLKTVAELMTEKEISQLPVMENDKLVGGVTEADVVRAVLEKGEGAE 126
Query: 131 SKRAVDIMEEPFPVVSEDEDLEVIKYLLEEHPAV-IVQGKNGKPIGIITRSDIFK 184
S R ++M +PFPVV +E + V+ LL EHPAV +VQG+ K +GIIT+ D+ +
Sbjct: 127 SIRVREVMGDPFPVVDPEESVNVVSKLLMEHPAVLVVQGE--KVVGIITKQDVMR 179
>emb|CAC11254.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 194
Score = 90.1 bits (220), Expect = 2e-17
Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 9/181 (4%)
Query: 12 DIKKIRKELGITQEELARKAGVTQAYIAKLEAGKVDPRLSTFNRILRALLECQKTR---- 67
+++K+RK LGI+Q++LA+ GV+Q+YIA+LE G ++P S I L + +
Sbjct: 9 ELRKMRKNLGISQKDLAKVTGVSQSYIARLEKGTINPTYSKIKAIYEYLTKSSEKASTMV 68
Query: 68 ITAKSIMSSPIISAKPEDKISDIVKVMEKYNISQVPVI-VKDKVVGAITERLLVRKSLED 126
+T IM+ ++ + ++ I + + +M SQ+PV+ ++KV+G I E + L+
Sbjct: 69 LTCDRIMTRNVVVCRSDESILNALNIMRDKGFSQLPVVNEENKVIGTIAENNINDMLLKG 128
Query: 127 EDIYSKRAVD---IMEEPFPVVSEDEDLEVIKYLLEEHPAVIVQGKNGKPIGIITRSDIF 183
I S R + +M + P V + + +I LL+ AV+V + G +GIIT++DI
Sbjct: 129 MSIDSLRGLTVRRVMSDVLPQVDRNTPVNIIYQLLKYSNAVLVI-EAGNLVGIITKADIL 187
Query: 184 K 184
K
Sbjct: 188 K 188
>gb|AAG19320.1| (AE005027) inosine-5'-monophosphate dehydrogenase-like; Gul1
[Halobacterium sp. NRC-1]
Length = 110
Score = 69.9 bits (168), Expect = 2e-11
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 74 MSSPIISAKPEDKISDIVKVMEKYNISQVPVIVKDKVVGAITERLLVRKSLEDEDIYSKR 133
M + ++S P+D +SD V M+ SQ+PVI VG+I++ +V ED+
Sbjct: 1 MHADLVSVAPDDAVSDAVARMQNAGYSQLPVISSGVPVGSISDNDIVHAG---EDVGDHA 57
Query: 134 AVDIMEEPFPVVSEDEDLEVIKYLLEEHPAVIVQGKNGKPIGIITRSDI 182
++M E FP VS D L+ I LL+ + AV+V ++G+ +GIIT++DI
Sbjct: 58 VREVMSESFPTVSADATLDEISSLLDHYKAVMVT-EDGETVGIITQADI 105
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.137 0.367
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65122162
Number of Sequences: 2977
Number of extensions: 2548330
Number of successful extensions: 9579
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9572
Number of HSP's gapped (non-prelim): 5
length of query: 192
length of database: 189,106,746
effective HSP length: 59
effective length of query: 133
effective length of database: 153,796,013
effective search space: 20454869729
effective search space used: 20454869729
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)