BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0212 (soxA) DE:sarcosine oxidase, subunit alpha (soxA)
(481 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75144 sarcosine oxidase, chain alpha (soxa) PAB0212 - Pyro... 944 0.0
pir||H71183 probable D-nopaline dehydrogenase - Pyrococcus horik... 816 0.0
gi|11497889 sarcosine oxidase, subunit alpha (soxA) [Archaeoglob... 529 e-149
pir||C75218 probable monooxygenase PAB0184 - Pyrococcus abyssi (... 190 2e-47
pir||H75122 sarcosine oxidase alpha chain truncated homolog PAB1... 185 7e-46
pir||E71008 hypothetical protein PH1363 - Pyrococcus horikoshii ... 184 2e-45
pir||F72254 hypothetical protein TM1433 - Thermotoga maritima (s... 154 2e-36
sp|Q46337|SOXA_CORS1 SARCOSINE OXIDASE ALPHA SUBUNIT (SARCOSINE ... 134 2e-30
sp|O87386|SOXA_RHIME SARCOSINE OXIDASE ALPHA SUBUNIT (SARCOSINE ... 129 5e-29
sp|P72300|OOXA_RHIME OPINE OXIDASE SUBUNIT A (OCTOPINE OXIDASE S... 129 9e-29
gi|10955053 ooxA [Agrobacterium tumefaciens] >gi|6225793|sp|Q591... 127 2e-28
pir||B82969 sarcosine oxidase alpha subunit PA5418 [imported] - ... 126 6e-28
gb|AAC38595.1| (AF053760) hydrogen cyanide synthase HcnB [Pseudo... 117 3e-25
gi|10955011 Probable noxA gene [Agrobacterium tumefaciens] >gi|6... 114 2e-24
pir||S55579 D-nopaline dehydrogenase (EC 1.5.1.19) NoxA - Agroba... 114 3e-24
pir||G83370 hydrogen cyanide synthase HcnB PA2194 [imported] - P... 113 3e-24
gb|AAF21029.1|AF208523_2 (AF208523) HcnB [Pseudomonas aeruginosa] 107 3e-22
sp|Q58065|NAOX_METJA PUTATIVE NADH OXIDASE (NOXASE) >gi|2129157|... 99 1e-19
pir||E83487 probable oxidoreductase PA1266 [imported] - Pseudomo... 97 4e-19
pir||A69047 NADH oxidase - Methanobacterium thermoautotrophicum ... 94 3e-18
pir||H72322 thioredoxin reductase - Thermotoga maritima (strain ... 87 4e-16
emb|CAB88983.1| (AL353864) putative oxidoreductase. [Streptomyce... 86 7e-16
gi|11499149 thioredoxin reductase (trxB) [Archaeoglobus fulgidus... 85 2e-15
pir||D71016 probable thioredoxin reductase - Pyrococcus horikosh... 84 3e-15
pir||D75116 thioredoxin reductase (trxb) PAB0500 - Pyrococcus ab... 83 6e-15
pir||E69194 thioredoxin reductase (NADPH) (EC 1.6.4.5) - Methano... 82 2e-14
gi|11498012 NADH oxidase (noxA-3) [Archaeoglobus fulgidus] >gi|7... 81 2e-14
sp|P23160|R34K_CLOPA 34.2 KD PROTEIN IN RUBREDOXIN OPERON (ORF A... 79 1e-13
pir||A83461 hypothetical protein PA1488 [imported] - Pseudomonas... 79 1e-13
gi|11499442 NADH oxidase (noxA-5) [Archaeoglobus fulgidus] >gi|7... 76 6e-13
sp|P35484|DLDH_ACHLA DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 75 2e-12
sp|O18480|DLHD_MANSE DIHYDROLIPOAMIDE DEHYDROGENASE (E3) >gi|226... 74 3e-12
gb|AAK41472.1| Toluene 1,2-dioxygenase system ferredoxin--NAD(+)... 72 1e-11
pir||A72548 probable lipoamide dehydrogenase component (E3) of p... 72 1e-11
dbj|BAB07127.1| (AP001518) thioredoxin reductase [Bacillus halod... 72 2e-11
pir||F72705 probable thioredoxin reductase APE1061 - Aeropyrum p... 71 2e-11
sp|P11959|DLD1_BACST DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 71 3e-11
pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed Wit... 71 3e-11
emb|CAC12113.1| (AL445066) probable thioredoxin reductase [Therm... 71 3e-11
emb|CAA76340.1| (Y16642) dihydrolipoamide dehydrogenase [Coryneb... 71 4e-11
>pir||C75144 sarcosine oxidase, chain alpha (soxa) PAB0212 - Pyrococcus abyssi
(strain Orsay) >gi|5457744|emb|CAB49234.1| (AJ248284)
sarcosine oxidase, subunit alpha (soxA) [Pyrococcus
abyssi]
Length = 481
Score = 944 bits (2413), Expect = 0.0
Identities = 481/481 (100%), Positives = 481/481 (100%)
Query: 1 MDIVRIKEHPILNFESKRGRKVTIYYKGKPIEAYEGETIAAALHAAGIKVLNYSRIKKRP 60
MDIVRIKEHPILNFESKRGRKVTIYYKGKPIEAYEGETIAAALHAAGIKVLNYSRIKKRP
Sbjct: 1 MDIVRIKEHPILNFESKRGRKVTIYYKGKPIEAYEGETIAAALHAAGIKVLNYSRIKKRP 60
Query: 61 RGLFCAIGKCSSCLMTVNGIPNVRTCITLVEDGMRIEENAPRLPKELKELKKRNVRRVKS 120
RGLFCAIGKCSSCLMTVNGIPNVRTCITLVEDGMRIEENAPRLPKELKELKKRNVRRVKS
Sbjct: 61 RGLFCAIGKCSSCLMTVNGIPNVRTCITLVEDGMRIEENAPRLPKELKELKKRNVRRVKS 120
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKI 180
DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKI
Sbjct: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKI 180
Query: 181 AEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKS 240
AEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKS
Sbjct: 181 AEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKS 240
Query: 241 VPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVE 300
VPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVE
Sbjct: 241 VPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVE 300
Query: 301 AMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIFD 360
AMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIFD
Sbjct: 301 AMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIFD 360
Query: 361 VDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGIEEA 420
VDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGIEEA
Sbjct: 361 VDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGIEEA 420
Query: 421 TTAMLEGKIAGIAAALRLGIASESLVKEIEKTERELEEFRSGPFGKHIVEGIRKLLSEVS 480
TTAMLEGKIAGIAAALRLGIASESLVKEIEKTERELEEFRSGPFGKHIVEGIRKLLSEVS
Sbjct: 421 TTAMLEGKIAGIAAALRLGIASESLVKEIEKTERELEEFRSGPFGKHIVEGIRKLLSEVS 480
Query: 481 K 481
K
Sbjct: 481 K 481
>pir||H71183 probable D-nopaline dehydrogenase - Pyrococcus horikoshii
>gi|3258180|dbj|BAA30863.1| (AP000007) 482aa long
hypothetical D-nopaline dehydrogenase [Pyrococcus
horikoshii]
Length = 482
Score = 816 bits (2086), Expect = 0.0
Identities = 402/478 (84%), Positives = 447/478 (93%), Gaps = 2/478 (0%)
Query: 1 MDIVRIKEHPILNFESKRGRKVTIYYKGKPIEAYEGETIAAALHAAGIKVLNYSRIKKRP 60
M+IVRI EHPIL+FE KR RKVTIYYKG+PIEAYEGETIAAALHAAGI+VLNYSR++KRP
Sbjct: 1 MEIVRINEHPILDFEKKRKRKVTIYYKGQPIEAYEGETIAAALHAAGIRVLNYSRVRKRP 60
Query: 61 RGLFCAIGKCSSCLMTVNGIPNVRTCITLVEDGMRIEENAPRLPKEL-KELKKRNVRRVK 119
RGLFCAIGKCSSCLMTVNGIPNVRTCITLVEDGM+IEEN P LP + K+ KK+ + VK
Sbjct: 61 RGLFCAIGKCSSCLMTVNGIPNVRTCITLVEDGMKIEENKPILPANINKKDKKKRAKIVK 120
Query: 120 SDIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVK 179
DIIV+GGGPAGMMAAISA D GAKV+LIDE+PMLGGQLVKQTHKFFGKR QFAG+RG+K
Sbjct: 121 GDIIVVGGGPAGMMAAISASDTGAKVILIDESPMLGGQLVKQTHKFFGKRDQFAGIRGIK 180
Query: 180 IAEILENEVKKR-NIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAME 238
IAEIL E++KR NI+ +L+TSAVGIFQDG EK+V+G+RKE+ELIE G+A+IVATGAME
Sbjct: 181 IAEILRREIEKRENIKAYLRTSAVGIFQDGEEKLVIGVRKENELIEFKGKAVIVATGAME 240
Query: 239 KSVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAI 298
K++PFENNDLPGIYGAGAIQTLMNTYG+KPGEKALIVGAGNVGLILAYQL+QA V+V+AI
Sbjct: 241 KTIPFENNDLPGIYGAGAIQTLMNTYGIKPGEKALIVGAGNVGLILAYQLLQANVQVQAI 300
Query: 299 VEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKI 358
VEAMPKIGGYFVHAAKVRRLGVPILTRHTIL+AEG+EKVERAIVA+IDENW PIPGTEKI
Sbjct: 301 VEAMPKIGGYFVHAAKVRRLGVPILTRHTILKAEGEEKVERAIVAEIDENWNPIPGTEKI 360
Query: 359 FDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGIE 418
FDVDLIAIAVGLRPSIELLQQAGCQI+YVRELGGHV VRD W+ETTV+GIFVAGDTAGIE
Sbjct: 361 FDVDLIAIAVGLRPSIELLQQAGCQIKYVRELGGHVPVRDRWMETTVKGIFVAGDTAGIE 420
Query: 419 EATTAMLEGKIAGIAAALRLGIASESLVKEIEKTERELEEFRSGPFGKHIVEGIRKLL 476
EATTAMLEGKIAG+AAALRLGIA E VKEIEKTE+ELEEFRSGPFG+ ++EGI+KLL
Sbjct: 421 EATTAMLEGKIAGLAAALRLGIAGEEWVKEIEKTEKELEEFRSGPFGRRVIEGIKKLL 478
>gi|11497889 sarcosine oxidase, subunit alpha (soxA) [Archaeoglobus fulgidus]
>gi|7482953|pir||A69284 coenzyme F420--quinone
oxidoreductase (EC 1.6.5.-) 56K chain - Archaeoglobus
fulgidus >gi|2650363|gb|AAB90959.1| (AE001086) sarcosine
oxidase, subunit alpha (soxA) [Archaeoglobus fulgidus]
Length = 534
Score = 529 bits (1349), Expect = e-149
Identities = 274/524 (52%), Positives = 359/524 (68%), Gaps = 52/524 (9%)
Query: 5 RIKEHPILNFESKRGRKVTIYYKGKPIEAYEGETIAAALHAAGIKVLNYSRIKKRPRGLF 64
R++EHPI++F KRG++VTIY GKP++AYEGET+AAAL+AAG++V + S RPRG F
Sbjct: 8 RLQEHPIVDF--KRGKEVTIYLNGKPVKAYEGETVAAALYAAGVRVFSRSFRWHRPRGFF 65
Query: 65 CAIGKCSSCLMTVNGIPNVRTCITLVEDGMRI--EENAPRLPKEL--------------- 107
CAIGKCS+C+M V+GIPNVRTC V DGM++ + P K++
Sbjct: 66 CAIGKCSACMMEVDGIPNVRTCKVYVRDGMQVRTQSGMPDAEKDVFSILDDVIDKVFPHG 125
Query: 108 -----------------KELKK---------------RNVRRVKSDIIVIGGGPAGMMAA 135
K ++K + +++D++VIGGGP GM AA
Sbjct: 126 SHYTKFTTSKKAREFMVKRMRKFTGFGNPPKAVFQGRAELEEIETDVLVIGGGPGGMSAA 185
Query: 136 ISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKIAEILENEVKK-RNIE 194
I+A GAKV+L+DENP LGGQLVKQTH+FFG + AG RG+KIA ILE E+ N+E
Sbjct: 186 INAGKYGAKVLLVDENPFLGGQLVKQTHRFFGSAKERAGTRGIKIAGILEEELNSIENVE 245
Query: 195 VFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKSVPFENNDLPGIYGA 254
V +T GI+ E +L+ + + I+VATGA E+++ FENNDLPG+YGA
Sbjct: 246 VRRETRVFGIYNGEAGAYQRLNDDEGKLLRIKAKKIVVATGAYERTLIFENNDLPGVYGA 305
Query: 255 GAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVEAMPKIGGYFVHAAK 314
G +QTLMN YG+KPG LIVG+GNVGLIL YQL+QAGV V AIVEAMP+IGGYFVHAAK
Sbjct: 306 GGVQTLMNVYGIKPGNMGLIVGSGNVGLILTYQLMQAGVNVAAIVEAMPRIGGYFVHAAK 365
Query: 315 VRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGLRPSI 374
VRRLGVPI RHTIL+A G++ VE A++AQ+D+ W+PIPGTEK D I +AVGL P+
Sbjct: 366 VRRLGVPIYVRHTILKAIGRKSVEGAVIAQLDDRWQPIPGTEKEIKCDFICVAVGLSPTH 425
Query: 375 ELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGIEEATTAMLEGKIAGIAA 434
ELL QAGC++++V ELGG V +R + ET+V+G++VAGD AGIEEAT A++EG+IAGI A
Sbjct: 426 ELLYQAGCEMKFVPELGGIVPLRTRFNETSVKGLYVAGDVAGIEEATAAIMEGRIAGIHA 485
Query: 435 ALRLGIASESLVKEIEKTERELEEFRSGPFGKHIVEGIRKLLSE 478
A+ LG E KE+++ +E+EEFR+GPFG+ IV G+ K E
Sbjct: 486 AVTLGYGGEEAKKELDEAVKEIEEFRAGPFGERIVCGLEKCTLE 529
>pir||C75218 probable monooxygenase PAB0184 - Pyrococcus abyssi (strain Orsay)
>gi|5457703|emb|CAB49194.1| (AJ248283) PROBABLE
MONOOXYGENASE [Pyrococcus abyssi]
Length = 407
Score = 190 bits (479), Expect = 2e-47
Identities = 119/318 (37%), Positives = 177/318 (55%), Gaps = 10/318 (3%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKI 180
D+ VIGGGPAGM AAI A + G V+LIDEN LGG L + H FG + G +
Sbjct: 3 DVAVIGGGPAGMAAAIKARELGLSVILIDENDYLGGILPQCIHPGFGIHYFKEELTGPEF 62
Query: 181 AEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEK- 239
A L N + R++EV V I + + + + S + E+ + II A GA E+
Sbjct: 63 AYKLMNRL--RDVEVRTSARVVEIINYSDIEKRLKVISPSGIEEIRAKTIIYAAGARERH 120
Query: 240 --SVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEA 297
+ + + GI+ AG QTLM+ YG+ PG + LIVG+G+VGLI+A + G +V+A
Sbjct: 121 AFEIGITGDRVAGIFTAGEAQTLMDIYGIMPGREILIVGSGDVGLIMARRFALEGARVKA 180
Query: 298 IVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEK 357
++E MP GG + + +P+ H ++ GK +V+R + ++DEN R IPGTE
Sbjct: 181 VIELMPYPGGLARNVMILNDFNIPLYLSHKVVEIRGKGRVQRVKIVKVDENLREIPGTEF 240
Query: 358 IFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGI 417
DVD + I+ GL P+++LL + G I GG + ++ LETTV GIFVAG+ I
Sbjct: 241 WVDVDTVIISAGLIPNVKLLTKVGVAID--PSTGGPIV--NDRLETTVPGIFVAGNALVI 296
Query: 418 EEATTAMLE-GKIAGIAA 434
+ ++E G++A A
Sbjct: 297 NDLVDYVVEQGELAAEGA 314
>pir||H75122 sarcosine oxidase alpha chain truncated homolog PAB1842
[similarity] - Pyrococcus abyssi (strain Orsay)
>gi|5458208|emb|CAB49697.1| (AJ248285) sarcosine
oxidase, subunit alpha related (soxA), Nter fragment
[Pyrococcus abyssi]
Length = 496
Score = 185 bits (466), Expect = 7e-46
Identities = 150/446 (33%), Positives = 217/446 (48%), Gaps = 56/446 (12%)
Query: 12 LNFESKRGRKVTIYYKGKPIEAYEGETIAAALHAAGIKVLNYSRIKKRPRGLFCAIGKCS 71
L+ K GRKVTIY++GK +EAYEGE I+ AL A GI L S + R RG F
Sbjct: 9 LDLTEKSGRKVTIYFEGKELEAYEGEKISVALLANGIYWLTTST-EGRKRGAFTF----G 63
Query: 72 SCLMTVNGIPNVRTCITLVEDGMRIEENAPRLPKELKELKKRNVRRVKSDIIVIGGGPAG 131
M VNG+ V T V++GMRIE + E ++ V+ V D+ V+GGGPAG
Sbjct: 64 PVPMKVNGVKGVDGRKTKVKEGMRIERQGYQEFHEEPVIEGGEVKEVVVDVAVVGGGPAG 123
Query: 132 MMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKIAEILENEVKKR 191
+ A + D V LI+E LGG + ++ K G + K E L ++K
Sbjct: 124 IGATLELQD-DLTVALIEEKGWLGGDMWLKSTKQEGFNKEAR-----KAVEELTKKIKDE 177
Query: 192 NIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKSVPFENNDLPGI 251
++VFL SA+G+F G E +V + KE+ LIE+ + +++ATGA++ + FENND+PGI
Sbjct: 178 -VKVFLGASALGVFDKG-EYFLVPVVKENSLIEILAKRVVLATGAVDSIMLFENNDIPGI 235
Query: 252 YGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVEAMPKIGGYFVH 311
+ +MN + V PG + G+ + E +++ + + G +VH
Sbjct: 236 FRRDFALEVMNVWEVAPGWNVAVTGS----------------RAEEVIQELERWGIDYVH 279
Query: 312 AAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGLR 371
V+ RAEG EKVE+ ID N G E + VD + A G R
Sbjct: 280 IPNVK-------------RAEGDEKVEKV----IDMN-----GNE--YKVDALIFADGRR 315
Query: 372 PSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGIEEATTAMLEGKIAG 431
P I + QAG +I + R G + + DE GI+VAG I+ LEG++ G
Sbjct: 316 PDINPITQAGGRIAFGR--GYYSPIIDE-KHRIRNGIYVAGSAVSIKPHYANYLEGRLVG 372
Query: 432 IAAALRLGIASESLVKEIEKTERELE 457
G SE + E + E E E
Sbjct: 373 AYILKEFGFDSEPCIYEEKLKEYEPE 398
>pir||E71008 hypothetical protein PH1363 - Pyrococcus horikoshii
>gi|3257786|dbj|BAA30469.1| (AP000006) 493aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 493
Score = 184 bits (463), Expect = 2e-45
Identities = 144/450 (32%), Positives = 221/450 (49%), Gaps = 64/450 (14%)
Query: 12 LNFESKRGRKVTIYYKGKPIEAYEGETIAAALHAAGIKVLNYSRIKKRPRGLFCAIGKCS 71
L+ KRG+KVTIY++GK +EAYEGE + AL A I L S + R RG F
Sbjct: 6 LDLTEKRGKKVTIYFEGKELEAYEGEKLPVALLANEIYWLTTSN-EGRKRGAFTF----G 60
Query: 72 SCLMTVNGIPNVRTCITLVEDGMRIEENAPRLPKELKELKKRNVRRVKSDIIVIGGGPAG 131
MTVNG+ + V+DGM+IE E ++ + RV D+ +IGGGPAG
Sbjct: 61 PVPMTVNGVKGLEARRIKVKDGMKIERQGYYDFHEEPVVEPGEIERVVVDVAIIGGGPAG 120
Query: 132 MMAAISAHDAGAKVVLIDENPMLGGQL----VKQTHKFFGKRSQFAGVRGVKIAEILENE 187
+ AA+ V LI+E LGG + +KQ + F K S+ K+ E L +
Sbjct: 121 IGAALELQQY-LTVALIEERGWLGGDMWLKGIKQ--EGFNKDSR-------KVVEELVGK 170
Query: 188 VKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKSVPFENND 247
+ + N +++L+TSA+G+F G E +V + + +LIE+ + +++ATGA++ ++ FENND
Sbjct: 171 LNE-NTKIYLETSALGVFDKG-EYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENND 228
Query: 248 LPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVEAMPKIGG 307
+PG++ +MN + V PG K + G+ K + +++ + + G
Sbjct: 229 MPGVFRRDFALEVMNVWEVAPGRKVAVTGS----------------KADEVIQELERWGI 272
Query: 308 YFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIFDVDLIAIA 367
+VH V+R+ EG EKVER I E + VD + A
Sbjct: 273 DYVHIPNVKRV-------------EGNEKVERVIDMNNHE-----------YKVDALIFA 308
Query: 368 VGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGIEEATTAMLEG 427
G RP I + QAG ++R+ R G + V DE+ GI+VAG I+ LEG
Sbjct: 309 DGRRPDINPITQAGGKLRFRR--GYYSPVLDEY-HRIKDGIYVAGSAVSIKPHYANYLEG 365
Query: 428 KIAGIAAALRLGIASESLVKEIEKTERELE 457
K+ G G ++ + E + E E E
Sbjct: 366 KLVGAYILKEFGYDAQPCIYEEKLREYEPE 395
>pir||F72254 hypothetical protein TM1433 - Thermotoga maritima (strain MSB8)
>gi|4981998|gb|AAD36503.1|AE001795_6 (AE001795)
oxidoreductase, putative [Thermotoga maritima]
Length = 403
Score = 154 bits (385), Expect = 2e-36
Identities = 91/267 (34%), Positives = 155/267 (57%), Gaps = 13/267 (4%)
Query: 118 VKSDIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRG 177
++ D++VIG G AGM AA+ A + GA+V+L++ + GG L + H FG + G
Sbjct: 1 MRVDVMVIGAGAAGMAAALKAKEEGAEVLLVERDERTGGILNQCIHNGFGLHYFRQELTG 60
Query: 178 VKIAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAM 237
+ AE + +++K I L + V +D +V E + E+ A++ ATGA
Sbjct: 61 PEYAERFQEKMEKMGIRA-LTNAYVKRVEDRRVILVT----EQGIEEVEVGALVYATGAR 115
Query: 238 EKSVPFENNDLPG-----IYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAG 292
E+ PF + +PG I+ AG Q L+N PG++ALI+G+G++GLI+A +L G
Sbjct: 116 ER--PFGSLMIPGDRPSGIFTAGVAQRLINIENRLPGKRALILGSGDIGLIMARRLTLEG 173
Query: 293 VKVEAIVEAMPKIGGYFVHAAK-VRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRP 351
++V +VE +P GG + + + +P+ T++ G+E++E +VA++DE +RP
Sbjct: 174 MEVVGVVERLPYAGGLLRNVIQCLEDYNIPLYLSSTVVEVRGRERLEEVVVAKVDEQFRP 233
Query: 352 IPGTEKIFDVDLIAIAVGLRPSIELLQ 378
IP TE++F VD + ++VGL P +EL++
Sbjct: 234 IPRTERVFKVDTLVLSVGLIPQVELIE 260
>sp|Q46337|SOXA_CORS1 SARCOSINE OXIDASE ALPHA SUBUNIT (SARCOSINE OXIDASE SUBUNIT)
>gi|2127435|pir||I40889 sarcosine oxidase (EC 1.5.3.1)
alpha chain [validated] - Corynebacterium sp
>gi|927591|gb|AAC43461.1| (U23955) sarcosine oxidase
alpha subunit [Corynebacterium sp.]
Length = 967
Score = 134 bits (335), Expect = 2e-30
Identities = 124/446 (27%), Positives = 202/446 (44%), Gaps = 44/446 (9%)
Query: 18 RGRKVTIYYKGKPIEAYEGETIAAALHAAGIKVLNYSRIKKRPRGLFCAIGKCSSCLMTV 77
RG + + GK +EA+ G+T+A+A+ A G + S RPRG+F A + + L+TV
Sbjct: 21 RGEALVLTVDGKQLEAFRGDTVASAMLANGQRACGNSMYLDRPRGIFSAGVEEPNALVTV 80
Query: 78 NG-----IPNVRTCITLVEDGMRIEENAPR----LPKELKELKKRNVRRVKSDIIVIGGG 128
I T V + R L +V V +D++V+G G
Sbjct: 81 EARHEQDINESMLAATTVPVTANLSATLLRGLGVLDPSTDPAYYDHVH-VHTDVLVVGAG 139
Query: 129 PAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKIAEILENEV 188
PAG+ AA A +GA+V+L+DE GG L + + A + +AE+ E
Sbjct: 140 PAGLAAAREASRSGARVLLLDERAEAGGSLRDAAGEQIDGQDAAAWIDAT-VAELAAAEE 198
Query: 189 KKRNIEVFLQTSAVGIFQDGNEKIVV-------------GIRKESELIELHGRAIIVATG 235
LQ + V D N + V G+ +E + + +++ATG
Sbjct: 199 TTH-----LQRTTVLGSYDANYVVAVQRRTVHLDGPSGAGVSRE-RIWHIRANQVVLATG 252
Query: 236 AMEKSVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKV 295
A E+ + FENND PGI AGA+++ +N YGV+ G + ++ + L L +G V
Sbjct: 253 AHERPIVFENNDRPGIMLAGAVRSYLNCYGVRAGSQIVVATTNDSAYPLVADLAASG-GV 311
Query: 296 EAIVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKE--KVERAIVAQIDENWRPIP 353
A+++A + AA+ GV ++T ++ E E ++ IVA++ E+ R +
Sbjct: 312 VAVIDARTTVS---AAAAEAVGAGVRVITGSVVVDTEANESGELSAVIVAELGED-REL- 366
Query: 354 GTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGD 413
G + F+ D++A+A G P + L Q Q + V + H V D V +AG
Sbjct: 367 GEPQRFEADVLAVAGGFNPVVHLHSQR--QGKLVWDTSIHAFVPD----AAVANQHLAGA 420
Query: 414 TAGIEEATTAMLEGKIAGIAAALRLG 439
G+ + +A+ G G AAA G
Sbjct: 421 LTGLFDTASALSTGAAVGAAAATAAG 446
>sp|O87386|SOXA_RHIME SARCOSINE OXIDASE ALPHA SUBUNIT (SARCOSINE OXIDASE SUBUNIT)
Length = 987
Score = 129 bits (322), Expect = 5e-29
Identities = 137/499 (27%), Positives = 220/499 (43%), Gaps = 109/499 (21%)
Query: 18 RGRKVTIYYKGKPIEAYEGETIAAALHAAGIKVLNYSRIKKRPRGLFCAIGKCSSCLMTV 77
R ++ + G+P++ EG+T+A+AL A G ++ S RPRG+ A + L+TV
Sbjct: 14 RNVPLSFTFDGRPMQGLEGDTLASALLANGRMLVGRSFKYHRPRGILTAGAAEPNALVTV 73
Query: 78 N----GIPNVRTCITLVEDGM--RIEENAPRLPKEL------------------------ 107
PN R + + +G+ R + P L ++
Sbjct: 74 GRGGRAEPNTRATMQELYEGLEARSQNRWPSLAFDIGALNGLLSPFLGAGFYYKTFMWPA 133
Query: 108 ---KELKKRNVRRVKS--------------------DIIVIGGGPAGMMAAISAHDAGAK 144
++L + +RR D++VIG GP G+ AA++A AGA+
Sbjct: 134 PLWEKLYEPVIRRAAGLGKASYEADPDAYEKSWAHCDLLVIGAGPTGLAAALTAGRAGAR 193
Query: 145 VVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKIAEILENEVKKR-NIEVFLQTSAVG 203
V+L+DE + GG L+ T GK + A +E++ N++V ++T+A G
Sbjct: 194 VILVDEGSLPGGSLLSDTATIDGKAA-------ADFARDTSDELRSMPNVQVLVRTTAFG 246
Query: 204 IFQDGN-----EKIVVGIRKESELIELH-------GRAIIVATGAMEKSVPFENNDLPGI 251
+ DGN E++ +R+ + + + G+A++ ATGA E+ + F ND PG+
Sbjct: 247 WY-DGNVFGAVERVQKHVREPASHLPVERLWRIVAGKALL-ATGAEERPLVFGGNDRPGV 304
Query: 252 YGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVEAMPKIGGYFVH 311
AGA++ +N YGV PG I + G LA +L AGV V AIV++ P
Sbjct: 305 MMAGAMRAYLNRYGVAPGRTPAIFTTNDTGYTLAQELEAAGVDVVAIVDSRP-------- 356
Query: 312 AAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGLR 371
AA V G L R ++ K AI G + VD +A+A G
Sbjct: 357 AAGVDYRGKARLVREAVVCGTKGGKAISAIEVHHG-------GRTETIAVDALAMAGGFD 409
Query: 372 PSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGIEEATTAMLEGKIAG 431
P I L G + + E +A +++G+ VAG A ATT G
Sbjct: 410 PIIHLACHRGGKPVWSAEKAAFLA------PGSLKGLEVAGGAA----ATT--------G 451
Query: 432 IAAALRLGIA-SESLVKEI 449
+AA L G A +E++V+E+
Sbjct: 452 LAACLGEGAARAEAIVREL 470
>sp|P72300|OOXA_RHIME OPINE OXIDASE SUBUNIT A (OCTOPINE OXIDASE SUBUNIT A)
>gi|1519477|gb|AAB07523.1| (U66830) OoxA [Sinorhizobium
meliloti]
Length = 526
Score = 129 bits (320), Expect = 9e-29
Identities = 101/359 (28%), Positives = 167/359 (46%), Gaps = 26/359 (7%)
Query: 107 LKELKKRNVRRVKSDIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFF 166
L+E+ + R D+++ G GPAGM AA+ A AGA+V ++DENP GGQ+ + +
Sbjct: 3 LREVSTASDLREFYDVLISGAGPAGMTAALEASAAGARVAVLDENPRPGGQIYRDITRNR 62
Query: 167 GKRSQFAGV---RGVKIAEILENEVKKRNIEVFLQTSAVGIFQDGNEKI-----VVGIRK 218
+R + G +G ++AE+ + R+ + + V + +E + VVG+
Sbjct: 63 PERKSYLGPDYWKGKQLAEVFD-----RSTIDYAPRATVWSLEGRDETVAKVRNVVGVTV 117
Query: 219 ESELIELHGRAIIVATGAMEKSVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAG 278
+ A+++ATGA E+ +P L + AGA Q + G P E ++ G G
Sbjct: 118 GGSARMIEADAVVLATGAQERPMPVPGWTLQRVMTAGAAQIALKAAGAMPSEPIVLAGCG 177
Query: 279 NVGLILAYQLIQAGVKVEAIVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVE 338
+ +LA QLI AGV +++ V L P + + +R K K +
Sbjct: 178 PLLYLLASQLIDAGVSDLTVLDTAQSTFRMSVLRHMPEFLRSPYVLKG--IRLLFKVKCQ 235
Query: 339 RAIVAQI----------DENWR-PIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYV 387
+V+ + E R G E+ + + G+ PS L AGC++R+
Sbjct: 236 ACVVSGVRSIAITGSERAEGVRFTTAGGEQAIPASSVLLHQGVIPSTNLTNAAGCELRWN 295
Query: 388 RELGGHVAVRDEWLETTVRGIFVAGDTAGIEEATTAMLEGKIAGIAAALRLGIASESLV 446
E V D ++ +GI+VAGD +GI A A + G+IA +AA LG+ S + V
Sbjct: 296 DEQRAFEPVTDNEGRSSRQGIYVAGDGSGIAGAQAAEVSGRIAALAALCDLGLVSVTAV 354
>gi|10955053 ooxA [Agrobacterium tumefaciens] >gi|6225793|sp|Q59160|OOXA_AGRTU
OPINE OXIDASE SUBUNIT A (OCTOPINE OXIDASE SUBUNIT A)
>gi|1073121|pir||S55589 D-nopaline dehydrogenase (EC
1.5.1.19) OoxA - Agrobacterium tumefaciens
>gi|496546|emb|CAA82988.1| (Z30328) OoxA [Agrobacterium
tumefaciens] >gi|8572694|gb|AAF77140.1| (AF242881) ooxA
[Agrobacterium tumefaciens]
Length = 503
Score = 127 bits (317), Expect = 2e-28
Identities = 103/338 (30%), Positives = 160/338 (46%), Gaps = 20/338 (5%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGV---RG 177
D++VIG GPAGM AA+ A +GA+V ++DENP GGQ+ ++ + R + G +G
Sbjct: 17 DLLVIGAGPAGMAAAVEASASGARVAVLDENPRPGGQIYREITRNSPDRRTYLGPDYWKG 76
Query: 178 VKIAEI--LEN-EVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVAT 234
+AE L N + R L+T Q N VVG+ + A+++AT
Sbjct: 77 QPLAEAFCLSNVDYASRATVWSLETRDKTAGQARN---VVGVTVAGSARMVETNAVVLAT 133
Query: 235 GAMEKSVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVK 294
GA E+ +P LPG+ AGA Q + G P +++G G + +LA QL+ AGV
Sbjct: 134 GAQERPMPVPGWTLPGVMTAGAAQIALKAAGAMPAGPVVLIGCGPLLYLLASQLVDAGVP 193
Query: 295 VEAIVEA--MPKIGGYFVHAAK-------VRRLGVPILTRHTILRAEGKEKVERAIVAQI 345
+++ P G H + ++ +G+ + R G + I +Q
Sbjct: 194 DLTVLDTAQSPFRGAVLRHMPEFLLSPYVLKGIGLLLKVRRHAQVVYGVRSI-AIIGSQH 252
Query: 346 DENWRPIPGT-EKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETT 404
E+ R G E+ + + G+ PS L AGC++++ E V D TT
Sbjct: 253 AESVRYAVGQGERSIPAKSVLLHQGVIPSTSLSNAAGCELQWNDEQRAFQPVTDHDGRTT 312
Query: 405 VRGIFVAGDTAGIEEATTAMLEGKIAGIAAALRLGIAS 442
GI+VAGD AGI A A + G++A +AA L + S
Sbjct: 313 KAGIYVAGDGAGIAGAQAAEVSGRLAALAALADLKLVS 350
>pir||B82969 sarcosine oxidase alpha subunit PA5418 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951745|gb|AAG08803.1|AE004954_5 (AE004954)
sarcosine oxidase alpha subunit [Pseudomonas aeruginosa]
Length = 1005
Score = 126 bits (313), Expect = 6e-28
Identities = 123/489 (25%), Positives = 211/489 (42%), Gaps = 84/489 (17%)
Query: 18 RGRKVTIYYKGKPIEAYEGETIAAALHAAGIKVLNYSRIKKRPRGLFCAIGKCSSCLMTV 77
R R +T + G+ + Y G+T+AAAL A G+ ++ S R RG+ A + + ++ +
Sbjct: 15 RNRPLTFSFNGQHYQGYAGDTLAAALLANGVDIVGRSFKYSRARGIVAAGAEEPNAILQI 74
Query: 78 ---------------------------NGIPNVRTCITLVEDGMRIEENAPRL------- 103
NG PNV+ + + + + P
Sbjct: 75 GSREATQIPNVRATQQALYGGLVATSTNGWPNVQNDLMGIFGKVGGKLMPPGFYYKTFMY 134
Query: 104 PKELKELKKRNVRRVKS--------------------DIIVIGGGPAGMMAAISAHDAGA 143
P+ + ++ +R+ D++V+G GPAG+ AA++A +GA
Sbjct: 135 PQSMWMTYEKYIRKAAGLGRAPTEVDPDSYDWMNHHCDVLVVGAGPAGLAAALAAARSGA 194
Query: 144 KVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKIAEILENEVKKRNIEVFLQTSAVG 203
+V+L DE GG L+ GK + +A+ + E++ + L S V
Sbjct: 195 RVILADEQEEFGGSLLDTRETLDGKPA------AEWVADAVA-ELQGLPEVILLPRSTVN 247
Query: 204 IFQDGNEKIVVGIRKESELIEL-------------HGRAIIVATGAMEKSVPFENNDLPG 250
+ D N + + R+ L E+ + +++A GA E+ + + NNDLPG
Sbjct: 248 GYHDHNF-LTIHERRTDHLGEVAPLGQVRQRVHRVRAKRVVLAAGAHERPLVYGNNDLPG 306
Query: 251 IYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVEAMPKIGGYFV 310
AGA+ T + YGV PG+K ++ + +A +AG++V AI +A G +V
Sbjct: 307 NMLAGAVSTYVRRYGVAPGKKLVLATNNDYAYRVALDWQEAGLQVVAIADARANPRGEWV 366
Query: 311 HAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGL 370
A+ R G+ ++T +++ A G ++V A VA+ID G E + D DLIA + G
Sbjct: 367 EEARQR--GMRVITGSSVIEARGGKRVSGAKVARIDLQAMRASGGEWL-DCDLIASSGGY 423
Query: 371 RPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGIEEATTAMLEGKIA 430
P + L G + + E+ V E L+ + AG G+ + +G A
Sbjct: 424 SPVVHLASHLGGKPEWREEILAFVP--GEGLQKRI----CAGAVNGVFGLAEVLADGYQA 477
Query: 431 GIAAALRLG 439
G AAL G
Sbjct: 478 GSRAALDAG 486
>gb|AAC38595.1| (AF053760) hydrogen cyanide synthase HcnB [Pseudomonas fluorescens]
Length = 469
Score = 117 bits (290), Expect = 3e-25
Identities = 93/353 (26%), Positives = 172/353 (48%), Gaps = 24/353 (6%)
Query: 123 IVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKIAE 182
+++GGGPAGM AAI + G + LI+E LGG + + + G + + G R ++
Sbjct: 6 VIVGGGPAGMAAAIELAEHGVRSTLIEEASRLGGVVYRGPLRD-GVQLDYLGPRYCEMLA 64
Query: 183 ILENEVK--KRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKS 240
L + ++ I+V L + VG +G + +V+ + E ++ ++ +I+A G E+S
Sbjct: 65 KLHGDFADHEQMIDVRLNSRVVGA--EGTQSLVL-LDGEEQVQQVSYEQLILAAGCHERS 121
Query: 241 VPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVE 300
VPF LPG+ G +Q + + VKP +I G G + ++A QL +GV+V + E
Sbjct: 122 VPFPGWTLPGVKLLGGLQLQIKSGVVKPQSPVVIAGTGPLLPLVACQLHASGVRVAGVYE 181
Query: 301 --AMPKIGGYFV--------------HAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQ 344
A+ KI + A ++ G+ + ++ A+G++ + VA
Sbjct: 182 ACALGKIAKQSLAMLNKPQLFLDGLSMLAYLKLHGIALRYGWGVVEAQGQDALSVVTVAP 241
Query: 345 IDENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETT 404
+W+P + +A+ G P +L QQ G + + + G A + W +++
Sbjct: 242 YSSDWQPDMAKAQRIAAQTLAVGYGFIPRTQLSQQMGLEHNFSDD-GYLRASANAWQQSS 300
Query: 405 VRGIFVAGDTAGIEEATTAMLEGKIAGIAAALRLGIAS-ESLVKEIEKTEREL 456
+ +AGD GI AML G+IA ++ ++ G+ S E+ ++ + ER+L
Sbjct: 301 EPHVHLAGDMGGIRGGEAAMLSGRIAALSILMQRGVLSNEAALQRRQGYERKL 353
>gi|10955011 Probable noxA gene [Agrobacterium tumefaciens]
>gi|6498364|dbj|BAA87816.1| (AB016260) Probable noxA
gene [Agrobacterium tumefaciens]
Length = 472
Score = 114 bits (283), Expect = 2e-24
Identities = 96/343 (27%), Positives = 150/343 (42%), Gaps = 40/343 (11%)
Query: 120 SDIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVK 179
+D++++G GPAGM AA A G V+++D GGQ+ + G+ +
Sbjct: 7 ADLLIVGAGPAGMAAARRAVRGGLSVIVLDSQSQPGGQIWRNA----GRNATSP------ 56
Query: 180 IAEILENEVKK--RNIEVFLQTSAVGIFQDGNEKIVVGIRKE----SELIELHGRAIIVA 233
I IL E ++ R +E FL A I ++ G E E+ + GR +++A
Sbjct: 57 IINILGAEYRRGVRQVEAFLACGADYIPDAQVSRLSQGWTVEYVWGGEIRSVRGRHLLLA 116
Query: 234 TGAMEKSVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGV 293
TGA E+ VPF LPG+ GA Q L+ T G P +VG+G + L+ Q+ AG
Sbjct: 117 TGAQERPVPFTGWTLPGVMTVGAAQILLKTAGQLPRGPVAVVGSGPLPLLYMQQMRLAGA 176
Query: 294 KVEAIVEAMPK---------IGGYFVHAAKVRR--------LGVPILTRHTILRAEGKEK 336
K A ++ P+ G ++ + GV + + A+G +
Sbjct: 177 KPVAYLDTTPRGLISRSLRGFRGALQEPGQILKGIAWLPQFSGVRHVRNVVKISAKGSGR 236
Query: 337 VERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAV 396
+E + G +V + + GL PS +L AG Q+ +
Sbjct: 237 LETV-------RFETSNGRSDRLEVKSLLVHEGLVPSHQLAVSAGAQLMWDVGQSAFRLE 289
Query: 397 RDEWLETTVRGIFVAGDTAGIEEATTAMLEGKIAGIAAALRLG 439
RDEW+ G+++AGD A I A A +EG+IA I LR G
Sbjct: 290 RDEWMNAGPDGLYIAGDGARIGGAVNAEIEGEIAAIGVLLRDG 332
>pir||S55579 D-nopaline dehydrogenase (EC 1.5.1.19) NoxA - Agrobacterium
tumefaciens >gi|496535|emb|CAA82963.1| (Z30316) NoxA
[Agrobacterium tumefaciens]
Length = 434
Score = 114 bits (282), Expect = 3e-24
Identities = 96/343 (27%), Positives = 150/343 (42%), Gaps = 40/343 (11%)
Query: 120 SDIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVK 179
+D++++G GPAGM AA A G V+++D GGQ+ + G+ +
Sbjct: 7 ADLLIVGAGPAGMAAARRAVRGGLSVIVLDSQSQPGGQIWRNA----GRNATSP------ 56
Query: 180 IAEILENEVKK--RNIEVFLQTSAVGIFQDGNEKIVVGIRKE----SELIELHGRAIIVA 233
I IL E ++ R +E FL A I ++ G E E+ + GR +++A
Sbjct: 57 IINILGAEYRRGVRQVEAFLACGADYIPDAQVSRLSQGWTVEYVWGGEIRSVRGRHLLLA 116
Query: 234 TGAMEKSVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGV 293
TGA E+ VPF LPG+ GA Q L+ T G P +VG+G + L+ Q+ AG
Sbjct: 117 TGAQERPVPFTGWTLPGVMTVGAAQILLKTAGQLPRGPVAVVGSGPLPLLYMQQMRLAGA 176
Query: 294 KVEAIVEAMPK---------IGGYFVHAAKVRR--------LGVPILTRHTILRAEGKEK 336
K A ++ P+ G ++ + GV + + A+G +
Sbjct: 177 KPVAHLDTTPRGLISRSLRGFRGALQEPGQILKGIAWLPQFSGVRHVRNVVKISAKGSGR 236
Query: 337 VERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAV 396
+E + G +V + + GL PS +L AG Q+ +
Sbjct: 237 LETV-------RFETSSGRSDRLEVKSLLVHEGLVPSHQLAVSAGAQLMWDVGQSAFRLE 289
Query: 397 RDEWLETTVRGIFVAGDTAGIEEATTAMLEGKIAGIAAALRLG 439
RDEW+ G+++AGD A I A A +EG+IA I LR G
Sbjct: 290 RDEWMNAGPDGLYIAGDGARIGGAVNAEIEGEIAAIGVLLRDG 332
>pir||G83370 hydrogen cyanide synthase HcnB PA2194 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948216|gb|AAG05582.1|AE004646_3 (AE004646) hydrogen
cyanide synthase HcnB [Pseudomonas aeruginosa]
Length = 464
Score = 113 bits (281), Expect = 3e-24
Identities = 100/360 (27%), Positives = 164/360 (44%), Gaps = 24/360 (6%)
Query: 123 IVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKIAE 182
+++GGG AGM AAI G VL DE GG + + + G + G R ++ E
Sbjct: 6 VIVGGGSAGMAAAIELARRGVPCVLFDEASRPGGVVYRGPLRA-GVDPAYLGARYTRMLE 64
Query: 183 ILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKSVP 242
L + + L+ ++ + DG +V+ + L E+ +++ATG E+SVP
Sbjct: 65 KLRRDFSACAGHIDLRLNSRVVGGDGQRLMVLD--EAERLHEVEYSHLLLATGCHERSVP 122
Query: 243 FENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVEA- 301
F LPG+ G +Q + + VKP LI G+G + ++A QL AGV+V + EA
Sbjct: 123 FPGWTLPGVMLLGGLQLQIKSGVVKPLGDTLIAGSGPLLPLVACQLHAAGVRVAGVYEAC 182
Query: 302 ----MPKIGGYFVHAAK-----------VRRLGVPILTRHTILRAEGKEKVERAIVAQID 346
M + ++ + ++ G+P+ ++ A G ++ VA D
Sbjct: 183 AFGRMARESLALLNKPQLFLDGLSMLGYLKLNGIPLHYGWGVVEASGDGELTEVTVAPYD 242
Query: 347 ENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVR 406
E WRP + +A+ G P +L QQ G + + + G A + W +++
Sbjct: 243 EEWRPDLENARPVKASTLAVGYGFIPRTQLSQQLGLEHGFSDD-GYLRAECNVWQQSSQP 301
Query: 407 GIFVAGDTAGIEEATTAMLEGKIAGIAAAL-RLGIASESLVKEIEKTERELE---EFRSG 462
I +AGD AGI AM+ G+IA ++ L R IA ++ E LE FR+G
Sbjct: 302 HIHLAGDMAGIRGGEAAMIGGRIAALSILLQREAIAPAEAIERRESHLARLEAIKRFRAG 361
>gb|AAF21029.1|AF208523_2 (AF208523) HcnB [Pseudomonas aeruginosa]
Length = 464
Score = 107 bits (265), Expect = 3e-22
Identities = 90/331 (27%), Positives = 152/331 (45%), Gaps = 20/331 (6%)
Query: 123 IVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKIAE 182
+++GGG AGM AAI G VL DE GG + + + G + G R ++ E
Sbjct: 6 VIVGGGSAGMAAAIELARRGVPCVLFDEASRPGGVVYRGPLRA-GVDPAYLGARYTRMLE 64
Query: 183 ILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKSVP 242
L + + L+ ++ + DG +V+ + L E+ +++ATG E+SV
Sbjct: 65 KLRRDFSACAGHIDLRLNSRVVGGDGQRLMVLD--EAERLHEVEYSHLLLATGCHERSVR 122
Query: 243 FENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVEA- 301
F LPG+ G +Q + + VKP LI G+G + ++A QL AGV+V + EA
Sbjct: 123 FPGWTLPGVMLLGGLQLQIKSGVVKPLGDTLIAGSGPLLPLVACQLHAAGVRVAGVYEAC 182
Query: 302 ----MPKIGGYFVHAAK-----------VRRLGVPILTRHTILRAEGKEKVERAIVAQID 346
M + ++ + ++ G+P+ ++ A G ++ VA D
Sbjct: 183 AFGRMARESLALLNKPQLFLDGLSMLGYLKLNGIPLHYGWGVVEASGDGELTEVTVAPYD 242
Query: 347 ENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVR 406
E WRP + +A+ G P +L QQ G + + + G A + W +++
Sbjct: 243 EEWRPDLENARPVKASTLAVGYGFIPRTQLSQQLGLEHGFSDD-GYLRAECNVWQQSSQP 301
Query: 407 GIFVAGDTAGIEEATTAMLEGKIAGIAAALR 437
I +AGD AGI AM+ G+IA ++ L+
Sbjct: 302 HIHLAGDMAGIRGGEAAMIGGRIAALSILLQ 332
>sp|Q58065|NAOX_METJA PUTATIVE NADH OXIDASE (NOXASE) >gi|2129157|pir||A64381 NADH oxidase
- Methanococcus jannaschii >gi|1591361|gb|AAB98641.1|
(U67512) NADH oxidase (nox) [Methanococcus jannaschii]
Length = 463
Score = 99.1 bits (243), Expect = 1e-19
Identities = 83/333 (24%), Positives = 155/333 (45%), Gaps = 50/333 (15%)
Query: 123 IVIGGGPAGMMAA--ISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKI 180
I+IG G AG+ A I ++ ++V+I + + + G F + I
Sbjct: 19 IIIGSGAAGLTTASTIRKYNKDMEIVVITKEKEIAYSPCAIPYVIEGAIKSFDDI----I 74
Query: 181 AEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKS 240
E+ ++RNI++ +T+ + + N+ + + K+ E++ +++ATGA
Sbjct: 75 MHTPEDYKRERNIDILTETTVIDVDSKNNK--IKCVDKDGNEFEMNYDYLVLATGAEPFI 132
Query: 241 VPFENNDLPGIYGAGAIQ---TLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEA 297
P E DL G++ I+ ++ +K +VGAG +GL +AY L G+ V
Sbjct: 133 PPIEGKDLDGVFKVRTIEDGRAILKYIEENGCKKVAVVGAGAIGLEMAYGLKCRGLDV-L 191
Query: 298 IVEAMPKIGGYFVHAAK-------VRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWR 350
+VE P++ F+ + + G+ ++ + + GKEKVE V
Sbjct: 192 VVEMAPQVLPRFLDPDMAEIVQKYLEKEGIKVMLSKPLEKIVGKEKVEAVYV-------- 243
Query: 351 PIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVR-DEWLETTVRGIF 409
K++DVD++ +A G+RP+IEL ++AGC+I G A+ +E ++T++ I+
Sbjct: 244 ----DGKLYDVDMVIMATGVRPNIELAKKAGCKI-------GKFAIEVNEKMQTSIPNIY 292
Query: 410 VAGDTAGIEE-----------ATTAMLEGKIAG 431
GD + + T A+ +GK+AG
Sbjct: 293 AVGDCVEVIDFITGEKTLSPFGTAAVRQGKVAG 325
>pir||E83487 probable oxidoreductase PA1266 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947199|gb|AAG04655.1|AE004556_5
(AE004556) probable oxidoreductase [Pseudomonas
aeruginosa]
Length = 417
Score = 97.1 bits (238), Expect = 4e-19
Identities = 84/333 (25%), Positives = 146/333 (43%), Gaps = 55/333 (16%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKI 180
D++++G GPAG+ AA++A +GA++ L+D+NP GGQ+ + G R+ +
Sbjct: 6 DLLIVGAGPAGLAAALAAAPSGARIALVDDNPAAGGQIWRD-----GPRASLPP----RA 56
Query: 181 AEILENEVKKRNIEVFLQTSAVG-------IFQDGNEKIVVGIRKESELIELHGRAIIVA 233
++ + + N+E F T V + +D VG R+ +++
Sbjct: 57 HQMRQRLAGQANVEHFPATRVVACGPGRRLLLEDPQRGWQVGYRR-----------LVLC 105
Query: 234 TGAMEKSVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGV 293
TGA E +PF LPG+ GAG +Q L G++ ++ G+G + L A Q G
Sbjct: 106 TGARELLLPFPGWTLPGVTGAGGLQALAKGGLPLAGQRLVVAGSGPLLLASAASASQCGA 165
Query: 294 KVEAIVEA------------MPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAI 341
++ + E +P+ G AA + +L A G+E++E
Sbjct: 166 RLLRVAEQAPARTLAAFAVRLPRWPGKLWQAAGL--FARSYRADSYVLAALGEERLEAVR 223
Query: 342 VAQIDENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWL 401
+ + G + + +A GL P+++L Q G + L G DEW
Sbjct: 224 LRE--------GGRVREIACERLACGFGLVPNVQLGQALGYR------LDGPALAVDEWQ 269
Query: 402 ETTVRGIFVAGDTAGIEEATTAMLEGKIAGIAA 434
++ + AG+ G + A++EG IAG AA
Sbjct: 270 AGSLPDHYAAGECTGFGGSELALVEGAIAGHAA 302
>pir||A69047 NADH oxidase - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2622461|gb|AAB85831.1| (AE000898) NADH oxidase
[Methanobacterium thermoautotrophicum]
Length = 450
Score = 94.4 bits (231), Expect = 3e-18
Identities = 85/339 (25%), Positives = 157/339 (46%), Gaps = 45/339 (13%)
Query: 122 IIVIGGGPAGMMAA--ISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVK 179
++++GGG G+ A I HD A + +I + + + G+ F
Sbjct: 3 VVIVGGGAGGLSTASNIRKHDKDADIKVITRDKHVAYSPCAIPYVMCGEVECFDD----- 57
Query: 180 IAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEK 239
I + ++RNI++ +T I +K V R + L E+ +++ATG
Sbjct: 58 IVMHRPEDYRERNIDILTETEVEAI---DPQKKTVTYRGKDGLREIPYDVLVLATGGSPF 114
Query: 240 SVPFENNDLPGIYGAGAIQTLMN----TYGVKPGEKALIVGAGNVGLILAYQLIQAGVKV 295
P E DL G++ I+TL + T ++A++VGAG +GL +AY L++ G++V
Sbjct: 115 IPPVEGTDLEGVF---TIRTLTDGERITEWASKSKRAVVVGAGLIGLEIAYGLLRMGLEV 171
Query: 296 EAIVEAMPKIGGYFVH---AAKVR----RLGVPILTRHTILRAEGKEKVERAIVAQIDEN 348
+ E +P+I + AA V+ G+ ++ + R G E+VE +V
Sbjct: 172 -TVTEMLPQIVPRSLDPDMAAIVQGYLEEKGIRVILGKALDRIVGDERVEGVVVG----- 225
Query: 349 WRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVR-DEWLETTVRG 407
++ + DL+ +A G+RP +L + AGC+I G AV+ ++ ++T+V
Sbjct: 226 -------DECLEADLVVLATGVRPETKLARMAGCEI-------GQWAVKVNDRMQTSVPD 271
Query: 408 IFVAGDTAGIEEATTAMLEGKIAGIAAALRLGIASESLV 446
I+ GD + +A T G A + +A++++V
Sbjct: 272 IYAVGDCVEVYDAVTGFRTQSPLGSTAVRQARVAAKNIV 310
>pir||H72322 thioredoxin reductase - Thermotoga maritima (strain MSB8)
>gi|4981404|gb|AAD35951.1|AE001753_7 (AE001753)
thioredoxin reductase [Thermotoga maritima]
Length = 317
Score = 87.0 bits (212), Expect = 4e-16
Identities = 82/325 (25%), Positives = 146/325 (44%), Gaps = 29/325 (8%)
Query: 110 LKKRNVRRVKSDIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKR 169
LKK+ ++ K DI+V+GGGPAG+ +AI A AG V+++++ + G V TH
Sbjct: 9 LKKKEIKD-KYDIVVVGGGPAGLTSAIYARRAGLSVLVVEK--AIEGGYVNLTH-LVENY 64
Query: 170 SQFAGVRGVKIAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRA 229
F + G ++A + +K +++ V + G++K+V + + +
Sbjct: 65 PGFPAISGEELASKFKEHAEKFGADIY-NAEVVKLEVQGDKKVV----ELDDGKRIEAPV 119
Query: 230 IIVATGAMEK--SVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQ 287
+IVATGA K +VP E +G G + G+ ++VG G+ +
Sbjct: 120 VIVATGANPKKLNVPGEKE----FFGKGVSYCATCDGYLFAGKDVIVVGGGDSACDESIF 175
Query: 288 LIQAGVKVEAIVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDE 347
L K+ I + + + ++ T+ GK+KVE ++ +
Sbjct: 176 LSNIVNKITMIQLLETLTAAKVLQERVLNNPKIEVIYNSTVREIRGKDKVEEVVIENVK- 234
Query: 348 NWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRG 407
G K+ D + I +GL P+ +LL+ Y G+V + DE +ET+V+G
Sbjct: 235 -----TGETKVLKADGVFIFIGLDPNSKLLEGLVELDPY-----GYV-ITDENMETSVKG 283
Query: 408 IFVAGDT--AGIEEATTAMLEGKIA 430
I+ GD + + TA+ +G IA
Sbjct: 284 IYAVGDVRKKNLRQIVTAVADGAIA 308
>emb|CAB88983.1| (AL353864) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 416
Score = 86.2 bits (210), Expect = 7e-16
Identities = 86/322 (26%), Positives = 135/322 (41%), Gaps = 26/322 (8%)
Query: 119 KSDIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGV 178
++D++V+G GPAG+ AA GA+VVL++ GG H+ FG R + G
Sbjct: 5 QADVLVVGAGPAGLTAAARLARTGARVVLLEREQSPGGVPRHCAHRGFGDRPH--ALTGP 62
Query: 179 KIAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAME 238
A +L + + + L+T + G + + +E L RA+++ATGA E
Sbjct: 63 AHARLLADAAARAGAD--LRTGVTALDWAGPRALTTVGPRGAE--TLAARAVVLATGARE 118
Query: 239 KSVPFENNDLP-----GIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGV 293
+ P +P G+Y G +Q ++ YG G +A+IVGA V A + AG
Sbjct: 119 R--PRAARLVPGTRPAGVYTTGELQQAVHLYGQHIGTRAVIVGAEGVSHAAADTVRAAGA 176
Query: 294 KVEAIVEAMPKIGGYFVHAAKVR-RLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPI 352
V A+V +P+ A R R P+LT + G+ ++ V D
Sbjct: 177 DVLALVTELPQAPAAPAWALAARLRHRTPVLTGTKVTELLGRGRLSGVRVRHRD------ 230
Query: 353 PGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAG 412
G + D + P EL ++ + + G D L T+ G+F G
Sbjct: 231 -GRSTVLACDTVVFTGDFVPDHELARRGALTL----DPGTRGPAVDGALRTSRPGVFAVG 285
Query: 413 DTA-GIEEATTAMLEGKIAGIA 433
+E A TA EG A A
Sbjct: 286 SVLHAVESAATAAREGAHAATA 307
>gi|11499149 thioredoxin reductase (trxB) [Archaeoglobus fulgidus]
>gi|7427758|pir||A69444 thioredoxin reductase (NADPH)
(EC 1.6.4.5) - Archaeoglobus fulgidus
>gi|2649006|gb|AAB89692.1| (AE000995) thioredoxin
reductase (trxB) [Archaeoglobus fulgidus]
Length = 300
Score = 84.7 bits (206), Expect = 2e-15
Identities = 82/317 (25%), Positives = 141/317 (43%), Gaps = 28/317 (8%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDE-NPMLGGQLVKQTHKFFGKRSQFAGVRGVK 179
D+ +IGGGPAG+ AA+ + G K V + +P+ L + + G F G G++
Sbjct: 3 DVAIIGGGPAGLTAALYSARYGLKTVFFETVDPVSQLSLAAKIENYPG----FEG-SGME 57
Query: 180 IAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEK 239
+ E ++ + K E L+ + ++G V+ +E E +AIIVATG K
Sbjct: 58 LLEKMKEQAVKAGAEWKLE-KVERVERNGETFTVI-----AEGGEYEAKAIIVATGGKHK 111
Query: 240 SVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIV 299
E G G G+K ++ G+G + A L G +V IV
Sbjct: 112 EAGIEGES--AFIGRGVSYCATCDGNFFRGKKVIVYGSGKEAIEDAIYLHDIGCEV-TIV 168
Query: 300 EAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIF 359
P +V + G+P+ TI + G KVE+ + ++ E
Sbjct: 169 SRTPSFRAEKALVEEVEKRGIPVHYSTTIRKIIGSGKVEKVVAYNREKK------EEFEI 222
Query: 360 DVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAG--I 417
+ D I +A+G+RP+ +++ + G + R+ G++ V D+ T V G+F AGD +
Sbjct: 223 EADGIFVAIGMRPATDVVAELGVE----RDSMGYIKV-DKEQRTNVEGVFAAGDCCDNPL 277
Query: 418 EEATTAMLEGKIAGIAA 434
++ TA +G +A +A
Sbjct: 278 KQVVTACGDGAVAAYSA 294
>pir||D71016 probable thioredoxin reductase - Pyrococcus horikoshii
>gi|3257849|dbj|BAA30532.1| (AP000006) 336aa long
hypothetical thioredoxin reductase [Pyrococcus
horikoshii]
Length = 336
Score = 84.3 bits (205), Expect = 3e-15
Identities = 87/322 (27%), Positives = 144/322 (44%), Gaps = 31/322 (9%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKI 180
D+I+IG GPAG AAI A G ++I ++ LGG + T G+ G ++
Sbjct: 25 DVIIIGAGPAGYTAAIYAARFGLDTIIITKD--LGGNMA-ITDLIENYPGFPEGISGSEL 81
Query: 181 AEILENEVKKRNIEVFLQ-----TSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATG 235
++ + ++VKK +EV + A + +G VV K + E + II+A G
Sbjct: 82 SKKMYDQVKKYGVEVIIDEVIRIDPAECAYYEGPCNFVV---KTANGKEYKAKTIIIAVG 138
Query: 236 AMEK--SVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGV 293
A + +VP E G G + G++ ++VG GN L A L GV
Sbjct: 139 AEPRKLNVPGEKE----FTGRGVSYCATCDGPLFVGKEVIVVGGGNTALQEALYLHSIGV 194
Query: 294 KVEAIVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIP 353
KV +V K + + ++ G+P + + +G KVE ++ +N +
Sbjct: 195 KV-TLVHRRDKFRADKILQDRFKQAGIPAILNTVVTEIKGTNKVESVVL----KNVKTGE 249
Query: 354 GTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGD 413
EK VD + I +G P + ++ G Y G++ V D ++ T V GIF AGD
Sbjct: 250 TVEK--KVDGVFIFIGYEPKTDFVKHLGITDEY-----GYIPV-DMYMRTKVPGIFAAGD 301
Query: 414 TAGI-EEATTAMLEGKIAGIAA 434
+ ++ A+ +G IA +A
Sbjct: 302 ITNVFKQIAVAVGQGAIAANSA 323
>pir||D75116 thioredoxin reductase (trxb) PAB0500 - Pyrococcus abyssi (strain
Orsay) >gi|5458156|emb|CAB49645.1| (AJ248285)
thioredoxin reductase (trxB) [Pyrococcus abyssi]
Length = 345
Score = 83.1 bits (202), Expect = 6e-15
Identities = 86/324 (26%), Positives = 141/324 (42%), Gaps = 35/324 (10%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKI 180
D+I+IG GPAG AAI A G ++I ++ LGG + T G+ G ++
Sbjct: 34 DVIIIGAGPAGYTAAIYAARFGLDTIIITKD--LGGNMA-ITDLIENYPGFPEGISGSEL 90
Query: 181 AEILENEVKKRNIEVFLQ-----TSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATG 235
A+ + VKK ++V A + +G + V K + E G+ II+A G
Sbjct: 91 AKRMYEHVKKYGVDVIFDEVVRIDPAECAYYEGPCQFEV---KTANGKEYKGKTIIIAVG 147
Query: 236 AMEKS--VPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGV 293
A + VP E G G + G++ ++VG GN L A L GV
Sbjct: 148 AEPRKLHVPGEKE----FTGRGVSYCATCDGPLFVGKEVIVVGGGNTALQEALYLHSIGV 203
Query: 294 KVEAIVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIP 353
KV +V K + ++++ G+P + + G KVE ++ +
Sbjct: 204 KV-TLVHRRDKFRADKILQDRLKQAGIPTILNTVVTEIRGTNKVESVVLKNVK------- 255
Query: 354 GTEKIFD--VDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVA 411
T + F+ VD + I +G P + ++ G Y G++ V D ++ T V GIF A
Sbjct: 256 -TGETFEKKVDGVFIFIGYEPKTDFVKHLGITDEY-----GYIKV-DMYMRTKVPGIFAA 308
Query: 412 GDTAGI-EEATTAMLEGKIAGIAA 434
GD + ++ A+ +G IA +A
Sbjct: 309 GDITNVFKQIAVAVGQGAIAANSA 332
>pir||E69194 thioredoxin reductase (NADPH) (EC 1.6.4.5) - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621795|gb|AAB85213.1| (AE000850) thioredoxin
reductase [Methanobacterium thermoautotrophicum]
Length = 303
Score = 81.5 bits (198), Expect = 2e-14
Identities = 90/324 (27%), Positives = 141/324 (42%), Gaps = 43/324 (13%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLG-GQLVKQTHKFFGKRSQFAGVRGVK 179
D+IVIG GPAG+ A I G+ V+++D+ P G G V + G F + G+
Sbjct: 6 DMIVIGAGPAGLTAGIYGGRQGSSVLMLDKGPAGGLGLEVPMMENYPG----FEMIAGMS 61
Query: 180 IAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGR------AIIVA 233
+ ++KK Q +AV ++ E V I K R AII A
Sbjct: 62 LV----TKMKK-------QATAVAELREMEE--VKEIEKGDVFTVKTSRDTYTASAIIFA 108
Query: 234 TGAMEKS--VPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQA 291
TG+ + VP EN+ + G G + G K L+VG GN A L
Sbjct: 109 TGSKHRQLGVPGEND----LLGRGVCYCATCDGPLYKGRKVLMVGGGNSAAQEAVFLKNI 164
Query: 292 GVKVEAIVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRP 351
G V +IV ++ K+R + +P++ + G E+VE I+
Sbjct: 165 GCDV-SIVHRRDELRADKYLQDKLREMEIPVIWNSVVKEIGGDERVEEVII------HNR 217
Query: 352 IPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVA 411
+ G ++ VD + IA+G P +L G ++ + GG++ + D++ T V ++ A
Sbjct: 218 VTGRDETLKVDGVFIAIGEEPLNQLAVDLGVEV----DKGGYI-ITDKFQRTNVPLVYAA 272
Query: 412 GD-TAGIEEATTAMLEGKIAGIAA 434
GD T G+ + TA EG IA A
Sbjct: 273 GDITGGLNQWVTACAEGAIAATYA 296
>gi|11498012 NADH oxidase (noxA-3) [Archaeoglobus fulgidus]
>gi|7483900|pir||H69299 NADH oxidase (noxA-3) homolog -
Archaeoglobus fulgidus >gi|2650233|gb|AAB90837.1|
(AE001077) NADH oxidase (noxA-3) [Archaeoglobus
fulgidus]
Length = 551
Score = 81.1 bits (197), Expect = 2e-14
Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 45/325 (13%)
Query: 121 DIIVIGGGPAGMMAA--ISAHDAGAKVVLIDEN----------PMLGGQLVKQTHKFFGK 168
+++VIGGG AG+ AA I D A + +++ P G LV + +
Sbjct: 2 NVVVIGGGAAGLKAASRIRRKDGDASITVVEAGKYVSLGRCGLPYYVGGLVHEVDNL--R 59
Query: 169 RSQFAGVRGVKIAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGR 228
+ + VR + K +NI+V +T A I D + K V +R SE EL+
Sbjct: 60 ETTYGAVRDEAYFK------KLKNIDVLTETVATEI--DRSRKTVKIVRNGSE-DELNYD 110
Query: 229 AIIVATGAMEKSVPFENNDLPGIYGAGAIQTLMNTYGV--KPGEKALIVGAGNVGLILAY 286
+++ATGA P E + G+ + + + + EKA+++GAG +GL A
Sbjct: 111 YLVIATGARPAKPPIEGIEAEGVVTLTSAEEAEKIIEMWEEGAEKAVVIGAGFIGLESAE 170
Query: 287 QLIQAGVKVEAIVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQI- 345
L ++V ++E M ++ A + R ++ H LR +G V V +I
Sbjct: 171 ALKNLDMEV-TVIEMMDRVA-----PAMLDREMAVLVENH--LREKGVNVVTSTRVEKIV 222
Query: 346 --DENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLET 403
D+ R + K + D++ +A G++P+ EL ++AG +I G + V DE++ T
Sbjct: 223 SQDDKVRAVIANGKEYPADVVVVATGIKPNSELAEKAGLKIGET----GAIWV-DEYMRT 277
Query: 404 TVRGIFVAGDTAGIEEATTAMLEGK 428
+ I+ GD TT ++ GK
Sbjct: 278 SDESIYAGGDCV----ETTCLVTGK 298
>sp|P23160|R34K_CLOPA 34.2 KD PROTEIN IN RUBREDOXIN OPERON (ORF A) >gi|322212|pir||S29117
thioredoxin reductase (NADPH) (EC 1.6.4.5) - Clostridium
pasteurianum >gi|144906|gb|AAA23276.1| (M60116) product
homologous to E.coli thioredoxin reductase: J.Biol.Chem.
(1988) 263:9015-9019, and to F52a protein of alkyl
hydroperoxide reductase from S.typhimurium: J.Biol.Chem.
(1990) 265:10535-10540; open reading frame A
[Clostridium pasteurianum]
Length = 308
Score = 78.8 bits (191), Expect = 1e-13
Identities = 78/324 (24%), Positives = 149/324 (45%), Gaps = 30/324 (9%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTH---KFFGKRSQFAGVRG 177
D+++IG GPAG+ AAI A A +++ EN ++GGQ +++T+ F G F + G
Sbjct: 8 DLVIIGAGPAGLTAAIYAIRAKLNTLVL-ENELVGGQ-IRETYTVENFPG----FNVISG 61
Query: 178 VKIAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAM 237
+A+ +E + + ++ I +EKI+ E+E + +A+I+ATGA
Sbjct: 62 ADLADKMEEHAASIGVNIDQFSNIEKIKLSDDEKII-----ETEDVIYKVKALIIATGAK 116
Query: 238 EKSVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEA 297
+ +P + ++G + + G+ ++VG GN + A L + +
Sbjct: 117 SRRLPIPEEE--KLHGKVIHYCELCDGALYQGKDLVVVGGGNSAVEAAIFLTKYARNITI 174
Query: 298 IVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEK 357
+ + + + V I+ I G+ ++E+ +V EN + TE
Sbjct: 175 VHQFDYLQAQKYSQDELFKHKNVKIIWDSEIRNIVGENEIEKIVV----ENVKTKQKTE- 229
Query: 358 IFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAG- 416
D + + +G P EL + + ++ G++ DE +ET ++G+F AGD
Sbjct: 230 -LKADGVFVYIGYEPKTELFKDSININKW-----GYIET-DENMETNIKGVFAAGDVRSK 282
Query: 417 -IEEATTAMLEGKIAGIAAALRLG 439
I + TTA+ +G +A + A +G
Sbjct: 283 LIRQLTTAVSDGTVAALMAEKYIG 306
>pir||A83461 hypothetical protein PA1488 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947442|gb|AAG04877.1|AE004577_12
(AE004577) hypothetical protein [Pseudomonas aeruginosa]
Length = 412
Score = 78.8 bits (191), Expect = 1e-13
Identities = 63/226 (27%), Positives = 105/226 (45%), Gaps = 8/226 (3%)
Query: 121 DIIVIGGGPAGMMAAISAHDAG-AKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVK 179
D+ ++G GPAG+ AAI G A+V +++ + GG H FG R + G
Sbjct: 8 DVAIVGSGPAGLAAAIELRRQGVARVCVLERDGEAGGIPRHCAHPPFGLREHGRLLTGPA 67
Query: 180 IAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAME- 238
A+ + ++ +++ L+ S V + G ++ S L +++ATGA E
Sbjct: 68 YAQRNVEQAERAGVDIRLRHSVVALAAAGLLQLATPEGPRS----LRATRVLLATGARET 123
Query: 239 -KSVPFENNDLP-GIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVE 296
+S D P G+ GA+Q + G+KP E+ LIVG V L +AG++
Sbjct: 124 PRSARLLGGDRPLGVINTGALQAYLYLQGLKPFERPLIVGTELVSLSAVMSCRRAGIRPV 183
Query: 297 AIVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIV 342
A++E + + + R GVP+ +L EG+ +VE A V
Sbjct: 184 AMLERNARATARWPLSLFPRLCGVPMHFSSELLEIEGRGRVEAARV 229
>gi|11499442 NADH oxidase (noxA-5) [Archaeoglobus fulgidus]
>gi|7447172|pir||A69482 NADH oxidase (noxA-5) homolog -
Archaeoglobus fulgidus >gi|2648692|gb|AAB89398.1|
(AE000975) NADH oxidase (noxA-5) [Archaeoglobus
fulgidus]
Length = 448
Score = 76.5 bits (185), Expect = 6e-13
Identities = 89/336 (26%), Positives = 148/336 (43%), Gaps = 54/336 (16%)
Query: 118 VKSDIIVIGGGPAGMMAAISA---HDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAG 174
+K D+++IGGGPAG++ A +A + A + ++ E L + K G S A
Sbjct: 4 MKYDVLIIGGGPAGIVTATTAKKFYPAKSVAIIKKEETSLVPCGIPYIFKTLG--SVEAD 61
Query: 175 VRGVKIAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVAT 234
V K AE L IE + +D + K V K + I ++ AT
Sbjct: 62 VMPTKPAENL-------GIEFIIDE-----VEDVDVKAKVVRTKGGKSISY--EKLVFAT 107
Query: 235 GAMEKSVPFENNDLPGIYGAGA-IQTLMNTY-GVKPGEKALIVGAGNVGLILAYQLIQAG 292
G+ E + G++ I+ L + VK EK +IVG G +G+ + Q+ +AG
Sbjct: 108 GSTPVMPRIEGVEKKGVFTVSKNIEELRKLHEAVKKAEKVVIVGGGFIGVEVGEQIAKAG 167
Query: 293 VK---VEAIVEAMP-KIGGYFVHAA--KVRRLGVPILTRHTILRAEGKEKVERAIVAQID 346
K VE + + +P F A ++++LGV + T+ R G VE +A
Sbjct: 168 KKFTMVEMMDQLLPAAFDKEFARIAEEELKKLGVEVYLNSTVKRITGNSSVEAVELAD-- 225
Query: 347 ENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVR 406
+ + D++ ++VG RP+IEL ++AG +I G+ DE+ T+ +
Sbjct: 226 ---------GRKIEADVVIMSVGYRPNIELAKKAGLRISI-----GNRIWTDEYGRTSEK 271
Query: 407 GIFVAGD-----------TAGIEEATTAMLEGKIAG 431
+F GD T+ + A+TA E +I G
Sbjct: 272 DVFAVGDCSEEKDFFTRETSRVMLASTATFEARIVG 307
>sp|P35484|DLDH_ACHLA DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE COMPLEX)
>gi|285175|pir||D42653 dihydrolipoamide dehydrogenase
(EC 1.8.1.4) - Acholeplasma laidlawii (fragment)
>gi|141811|gb|AAA21910.1| (M81753) dihydrolipoamide
dehydrogenase [Acholeplasma laidlawii]
Length = 336
Score = 74.5 bits (180), Expect = 2e-12
Identities = 100/360 (27%), Positives = 154/360 (42%), Gaps = 72/360 (20%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGG--------------------QLVK 160
+II++GGGP G +AAI A GAKV L+ E ++GG VK
Sbjct: 6 EIIIVGGGPGGYVAAIKAAQYGAKVALV-EKEVVGGICLNHGCIPTKTFLKSAKVFNTVK 64
Query: 161 QTHKFFGKRSQFAGVRGVKIAEILENEVKK--RNIEVFLQTSAVGIF------QDGNEKI 212
++ F S G KI + VK+ + L+ + V ++ + NE +
Sbjct: 65 KSMDFGVSTSGEVGFDWSKIVSRKDGVVKQLTNGVAFLLKKNGVDVYNGFGDIKSANEVV 124
Query: 213 VVGIRKESELIELHGRAIIVATGAMEKSVPFENNDLPGI---YGAGAIQTLMNTYGVKPG 269
V G ES L + +I+ATG+ P +PG+ Y G + T VK
Sbjct: 125 VNG---ES----LKTKNVIIATGSSAVVPP-----IPGVKEAYEKGIVVTSRELLNVKNY 172
Query: 270 EKAL-IVGAGNVGLILAYQLIQAGVKVEAIVEAMPKI------GGYFVHAAKVRRLGVPI 322
K++ IVG G +G+ A G KV I+E M I +A ++R G+ I
Sbjct: 173 PKSIVIVGGGVIGVEFATVFNSFGSKV-TIIEMMDGILPTMDDDIRVAYAKTLKRDGIEI 231
Query: 323 LTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGC 382
LT +AE K+ + + +D G E + DLI ++VG R + + L+ G
Sbjct: 232 LT-----KAEVKKVDDHKVTYSLD-------GKETTIEGDLILMSVGTRANSKGLEHLGL 279
Query: 383 QIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAG-IEEATTAMLEGKIAGIAAALRLGIA 441
E+ +E+L+T V G++ GD G A A EG I + L++G A
Sbjct: 280 ------EMDRANIKTNEYLQTNVPGVYAIGDVNGKFMLAHVAEHEG-ITAVQHILKIGHA 332
>sp|O18480|DLHD_MANSE DIHYDROLIPOAMIDE DEHYDROGENASE (E3) >gi|2267131|gb|AAB88282.1|
(AF008586) dihydrolipoamide dehydrogenase [Manduca
sexta]
Length = 497
Score = 74.1 bits (179), Expect = 3e-12
Identities = 86/345 (24%), Positives = 147/345 (41%), Gaps = 83/345 (24%)
Query: 120 SDIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGG-----------QLVKQTHKFFGK 168
+D++VIG GP G +AAI A G KVV +++ P LGG L+ TH +
Sbjct: 31 ADLVVIGAGPGGYVAAIKAAQLGMKVVSVEKEPSLGGTCLNVGCIPSKALLHNTHLYHMA 90
Query: 169 RSQFAGVRGVKIAEILENEVKKRNIEVFLQTSAVG----IFQDGNEKIVVG--------- 215
+ F RG++ E+ N + +V + G +FQ K+V G
Sbjct: 91 KHDFKH-RGIETGEVKFNFKAMMDYKVNAVKALTGGIAMLFQKNKVKLVRGAGTIVAPNK 149
Query: 216 --IRKESELIELHGRAIIVATGAMEKSVP---FENNDLPGIYGAGAIQTLMNTYGVKPGE 270
++ E + ++ + I++ATG+ P F+ + GA +++++ +
Sbjct: 150 VEVKGEKGVETVNTKNILIATGSEVTPFPGVTFDEKQIITSTGALSLESV--------PK 201
Query: 271 KALIVGAGNVGLILAYQLIQAGVKVEAIVEAMPKIGGYFVHAAKVRRLGVPILTRHTILR 330
K L++GAG +GL L + G V AI E + IGG + + + + IL
Sbjct: 202 KMLVIGAGVIGLELGSVYQRLGADVTAI-EFLGSIGGI--------GIDMEVSKDYRILA 252
Query: 331 AEG-KEKVERAIVAQIDENWR----------PIPGTEKIFDVDLIAIAVGLRPSIELLQQ 379
+G K K+E ++ E G ++ D D++ I++G RP
Sbjct: 253 KQGMKFKLETKVLGVKKEGSTVKVEDVSIEGAKGGNKETMDCDVVLISIGRRP------- 305
Query: 380 AGCQIRYVRELG-----------GHVAVRDEWLETTVRGIFVAGD 413
Y ++LG G V V +++ +TTV GI+ GD
Sbjct: 306 ------YTKDLGLDKVGIALDDRGRVPVNNKF-QTTVPGIYAIGD 343
>gb|AAK41472.1| Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase
component, probable (todA) [Sulfolobus solfataricus]
Length = 404
Score = 72.2 bits (174), Expect = 1e-11
Identities = 71/233 (30%), Positives = 112/233 (47%), Gaps = 31/233 (13%)
Query: 189 KKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKSVPFENNDL 248
K+ N+EV L S I D N K I + +I +++TG + + ++
Sbjct: 69 KRDNLEVMLNKSVERI--DANLK--EAILNDGSVISFD--KALISTGGRPRRL-----NI 117
Query: 249 PGIYGAGAIQTLMNTYGVKP----GEKALIVGAGNVGLILAYQLIQAGVKVEAIVEAMPK 304
PG A +++L + ++ G+ ALI+GAG +G+ +A LI GVK +VE MP
Sbjct: 118 PGSENALYLRSLDDADRIREAASKGKNALIIGAGFIGVEVASSLITLGVKT-TVVEVMPY 176
Query: 305 IGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIFDVDLI 364
I FV KV R+ L ++G + V +I KI + D+
Sbjct: 177 IWNTFVD-EKVSRV------IQQYLESKGINFILNESVKEIQGKIATTSSGRKI-EADMF 228
Query: 365 AIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGI 417
IAVG+ P++EL Q++G Q+ + V +E+LET+ R I+ AGD A I
Sbjct: 229 LIAVGISPNVELAQRSGMQV-------DNGIVVNEYLETSARDIYAAGDIANI 274
>pir||A72548 probable lipoamide dehydrogenase component (E3) of pyruvate
dehydrogenase complex APE1669 - Aeropyrum pernix (strain
K1) >gi|5105357|dbj|BAA80670.1| (AP000062) 467aa long
hypothetical lipoamide dehydrogenase component (E3) of
pyruvate dehydrogenase complex [Aeropyrum pernix]
Length = 467
Score = 72.2 bits (174), Expect = 1e-11
Identities = 91/339 (26%), Positives = 148/339 (42%), Gaps = 44/339 (12%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQL-------VKQTHKFFGKRSQFA 173
D++V+GGGP G AA+ A G V L+ E LGG+ K G + A
Sbjct: 8 DLVVVGGGPGGYPAAVRAAQEGLNVALV-EMDSLGGECTNYGCIPTKALLHPAGLVASLA 66
Query: 174 GVRGVK---------IAEILENEVK--KRNIEVFLQTSAVGIFQDGNEKIVVGIRKESEL 222
++ VK + E +++ VK + L+ V + + G KI G+ +
Sbjct: 67 RLKFVKGSVDVDFKGLMEWVDSVVKGVSNGVSTLLKGYGVEVVK-GRAKIRPGVVEVDGS 125
Query: 223 IELHGRAIIVATGAMEKSVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGL 282
+ +++A G S+P D ++ I L KPG + LIVG G +G+
Sbjct: 126 GSIGYSKLVLALGTSPASIPGLEPDGEVVHNNRTILGLRR----KPG-RMLIVGGGYIGV 180
Query: 283 ILAYQLIQAGVK---VEAIVEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVER 339
A + + GV+ VE + +P + F + RRL + HT + E E+ ER
Sbjct: 181 EYATAMARLGVEVTIVELLDRLLPNMQRDFSRVVE-RRLRAEGVKIHTKSKVEAVERRER 239
Query: 340 AIVAQIDENWRPIPGTEKIFDVDLIAIAVGLRPSI--ELLQQAGCQIRYVRELGGHVAVR 397
V ++ G K+ + D I +AVG RP+ L++ G ++ + G++ V
Sbjct: 240 YAVVEVS-------GVGKM-EYDAILVAVGRRPNTGDVGLEKLGVKL----DKAGYIQVD 287
Query: 398 DEWLETTVRGIFVAGDTAGIE-EATTAMLEGKIAGIAAA 435
LET V G++ +GD G A A L+ +A AA
Sbjct: 288 GATLETGVPGVYASGDVTGPPLLAHRAFLQAVVAAERAA 326
>dbj|BAB07127.1| (AP001518) thioredoxin reductase [Bacillus halodurans]
Length = 330
Score = 71.8 bits (173), Expect = 2e-11
Identities = 74/321 (23%), Positives = 131/321 (40%), Gaps = 30/321 (9%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVK-QTHKFFGKRSQFAGVRGVK 179
DI +IGGGP G+ AA AKV +I+ P LGGQL K+ + F V+
Sbjct: 9 DITIIGGGPTGLFAAFYGGMRQAKVKIIESMPQLGGQLAALYPEKYIYDVAGFPKVKAQD 68
Query: 180 IAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEK 239
+ L+ + ++ N + L+ S + ++ ++ + KE+ + +AII+ GA
Sbjct: 69 LVNDLKRQAEQFNPTIALEQSVQNVTKETDDTFTIKTDKETH----YSKAIIITAGAGAF 124
Query: 240 SVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIV 299
+ Y +Q +N G+ LI G G+ + A +++ K ++
Sbjct: 125 QPRRLEVEGAKQYEGKNLQYFVNDLNAYAGKNVLISGGGDSAVDWAL-MLEPVAKNVTLI 183
Query: 300 EAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGK-EKVERAIVAQIDENWRPIPGTEKI 358
K + +++ V ILT I G EK+ + ++ + +
Sbjct: 184 HRRDKFRAHEHSVELLQKSSVNILTPFAISELSGDGEKIHHVTIQEVKGD------AVET 237
Query: 359 FDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGD----- 413
DVD + + G S+ ++ G +I + V + +ET + GI+ AGD
Sbjct: 238 LDVDEVIVNFGFVSSLGPIKGWGLEIE------KNSIVVNTKMETNIPGIYAAGDICTYP 291
Query: 414 ------TAGIEEATTAMLEGK 428
G EA TA+ K
Sbjct: 292 GKVKLIATGFGEAPTAVNNAK 312
>pir||F72705 probable thioredoxin reductase APE1061 - Aeropyrum pernix (strain
K1) >gi|5104731|dbj|BAA80046.1| (AP000060) 343aa long
hypothetical thioredoxin reductase [Aeropyrum pernix]
Length = 343
Score = 71.4 bits (172), Expect = 2e-11
Identities = 78/344 (22%), Positives = 151/344 (43%), Gaps = 38/344 (11%)
Query: 103 LPKELKELKKRNVRRVKS-DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQ 161
+P L ++ + R + D +++G GPAG+ AAI +++ + +GGQL
Sbjct: 7 MPLRLSAVRAPKIPRGEEYDTVIVGAGPAGLSAAIYTTRFLMSTLIVSMD--VGGQL--- 61
Query: 162 THKFFGKRSQFAGVRGVKIAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVG--IRKE 219
+ G+ G++ ++++E+ K + E+F G+ +++ G + +
Sbjct: 62 --NLTNWIDDYPGMGGLEASKLVESF--KSHAEMFGAKIVTGVQVKTVDRLDDGWFLVRG 117
Query: 220 SELIELHGRAIIVATGAMEKSVPFENNDLPG---IYGAGAIQTLMNTYGVKPGEKALIVG 276
S +E+ R +I+A G+ + + +PG + G G + + G+ A++V
Sbjct: 118 SRGLEVKARTVILAVGSRRRKL-----GVPGEAELAGRGVSYCSVCDAPLFKGKDAVVVV 172
Query: 277 AGNVGLILAYQLIQAGVKVEAIVEAMP--KIGGYFVHAAKVRRLGVPILTRHTILRAEGK 334
G + L+ V +V + ++V A+ ++ + + + G+
Sbjct: 173 GGGDSALEGALLLSGYVGKVYLVHRRQGFRAKPFYVEEAR-KKPNIEFILDSIVTEIRGR 231
Query: 335 EKVERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHV 394
++VE +V + G EK VD I I +G P EL + G + + G+V
Sbjct: 232 DRVESVVVKN------KVTGEEKELRVDGIFIEIGSEPPKELFEAIGLETDSM----GNV 281
Query: 395 AVRDEWLETTVRGIFVAGDTA----GIEEATTAMLEGKIAGIAA 434
V DEW+ T++ GIF AGD G + TA G +A +A
Sbjct: 282 VV-DEWMRTSIPGIFAAGDCTSMWPGFRQVVTAAAMGAVAAYSA 324
>sp|P11959|DLD1_BACST DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE COMPLEX)
>gi|98197|pir||S13839 dihydrolipoamide dehydrogenase (EC
1.8.1.4) [validated] - Bacillus stearothermophilus
>gi|40044|emb|CAA37631.1| (X53560) dihydrolipoamide
dehydrogenase [Bacillus stearothermophilus]
Length = 470
Score = 71.0 bits (171), Expect = 3e-11
Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 50/349 (14%)
Query: 118 VKSDIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGG-----------QLVKQTHKF- 165
++++ +V+G GP G +AAI A G KV ++ E LGG L+ +H++
Sbjct: 8 IETETLVVGAGPGGYVAAIRAAQLGQKVTIV-EKGNLGGVCLNVGCIPSKALISASHRYE 66
Query: 166 FGKRSQFAGVRGVKIA-EILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIE 224
K S+ G++ + + + + K ++ L G+ + +IV G E
Sbjct: 67 QAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKG-----EAYF 121
Query: 225 LHGRAIIVATGAMEKSVPFENN---------DLPGIYGAGAIQTLMNTYGVKPGE---KA 272
+ + V G ++ F+N +LP + I L +T + GE
Sbjct: 122 VDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRI--LDSTGALNLGEVPKSL 179
Query: 273 LIVGAGNVGLILAYQLIQAGVKVEAIVEAMPKIGGYFVHAA-----KVRRLGVPILTRHT 327
+++G G +G+ L G KV + A + G+ A ++++ GV ++T
Sbjct: 180 VVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTN-- 237
Query: 328 ILRAEGKEKVERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYV 387
A+G E+ E + + N G K D D + + VG RP+ + L I+
Sbjct: 238 -ALAKGAEEREDGVTVTYEAN-----GETKTIDADYVLVTVGRRPNTDELGLEQIGIKMT 291
Query: 388 RELGGHVAVRDEWLETTVRGIFVAGD-TAGIEEATTAMLEGKIAGIAAA 435
G + V D+ T+V IF GD G A A EGK+A A A
Sbjct: 292 NR--GLIEV-DQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIA 337
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
>gi|1633235|pdb|1EBD|B Chain B, Dihydrolipoamide
Dehydrogenase Complexed With The Binding Domain Of The
Dihydrolipoamide Acetylase
Length = 455
Score = 71.0 bits (171), Expect = 3e-11
Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 50/349 (14%)
Query: 118 VKSDIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGG-----------QLVKQTHKF- 165
++++ +V+G GP G +AAI A G KV ++ E LGG L+ +H++
Sbjct: 2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIV-EKGNLGGVCLNVGCIPSKALISASHRYE 60
Query: 166 FGKRSQFAGVRGVKIA-EILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIE 224
K S+ G++ + + + + K ++ L G+ + +IV G E
Sbjct: 61 QAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKG-----EAYF 115
Query: 225 LHGRAIIVATGAMEKSVPFENN---------DLPGIYGAGAIQTLMNTYGVKPGE---KA 272
+ + V G ++ F+N +LP + I L +T + GE
Sbjct: 116 VDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNRI--LDSTGALNLGEVPKSL 173
Query: 273 LIVGAGNVGLILAYQLIQAGVKVEAIVEAMPKIGGYFVHAA-----KVRRLGVPILTRHT 327
+++G G +G+ L G KV + A + G+ A ++++ GV ++T
Sbjct: 174 VVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTN-- 231
Query: 328 ILRAEGKEKVERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYV 387
A+G E+ E + + N G K D D + + VG RP+ + L I+
Sbjct: 232 -ALAKGAEEREDGVTVTYEAN-----GETKTIDADYVLVTVGRRPNTDELGLEQIGIKMT 285
Query: 388 RELGGHVAVRDEWLETTVRGIFVAGD-TAGIEEATTAMLEGKIAGIAAA 435
G + V D+ T+V IF GD G A A EGK+A A A
Sbjct: 286 NR--GLIEV-DQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIA 331
>emb|CAC12113.1| (AL445066) probable thioredoxin reductase [Thermoplasma
acidophilum]
Length = 319
Score = 71.0 bits (171), Expect = 3e-11
Identities = 78/330 (23%), Positives = 135/330 (40%), Gaps = 30/330 (9%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQ--THKFFGKRSQFAGVRGV 178
D++++G G AG AA+ A +G V ++D+ + GG + + G +S
Sbjct: 18 DVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEAPLVENYLGFKSIVGSELAK 76
Query: 179 KIAEILENEVKKRNIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAME 238
A+ N K R G+ +K G E+ H + +I+ TG
Sbjct: 77 LFADHAANYAKIRE----------GVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTH 126
Query: 239 KSVPFENNDLPGIYGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAI 298
K + + +G G + G++ + +G GN G I A + + VK I
Sbjct: 127 KHLGVKGES--EYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEY-VKNVTI 183
Query: 299 VEAMPKIGGYFVHAAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKI 358
+E MPK + ++++ +P + + G K + + G EK+
Sbjct: 184 IEYMPKYMCENAYVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYK-----DRTTGEEKL 238
Query: 359 FDVDLIAIAVGLRPSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGIE 418
+ D + I VGL P L+ +G ++ + G++ V D T+V G++ AGD
Sbjct: 239 IETDGVFIYVGLIPQTSFLKDSGVKL----DERGYIVV-DSRQRTSVPGVYAAGDVTSGN 293
Query: 419 EATTAMLEGKIAGIAAALRLGIASESLVKE 448
A A G G AAL L S+S+ K+
Sbjct: 294 FAQIASAVGD--GCKAALSL--YSDSISKK 319
>emb|CAA76340.1| (Y16642) dihydrolipoamide dehydrogenase [Corynebacterium
glutamicum]
Length = 469
Score = 70.6 bits (170), Expect = 4e-11
Identities = 86/343 (25%), Positives = 149/343 (43%), Gaps = 51/343 (14%)
Query: 121 DIIVIGGGPAGMMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKI 180
D++V+G GP G ++AI A G KV +I E GG + G + ++ ++
Sbjct: 6 DVVVLGAGPGGYVSAIRAAQLGKKVAVI-EKQYWGGVCLN-----VGCIPSKSLIKNAEV 59
Query: 181 AEILENEVKKRNIE---VFLQTSAVGIFQDGNEKIVVGIR---KESELIELHGRAIIVAT 234
A +E K I F A + ++KIV G+ K++++IE+HG
Sbjct: 60 AHTFTHEKKTFGINGEVTFNYEDAHKRSRGVSDKIVGGVHYLMKKNKIIEIHGLGNFKDA 119
Query: 235 GAME--------KSVPFEN---------NDLPGI-YGAGAIQTLMNTYGVKPGEKALIVG 276
+E K++ F++ N L G+ + + +K +IVG
Sbjct: 120 KTLEVTDGKDAGKTITFDDCIIATGSVVNTLRGVDFSENVVSFEEQILNPVAPKKMVIVG 179
Query: 277 AGNVGLILAYQLIQAGVKVEAIVEAMPKI------GGYFVHAAKVRRLGVPILTRH--TI 328
AG +G+ AY L GV V ++E M ++ V A +++GV +L H T
Sbjct: 180 AGAIGMEFAYVLGNYGVDV-TVIEFMDRVLPNEDAEVSKVIAKAYKKMGVKLLPGHATTA 238
Query: 329 LRAEGKEKVERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGLRPSIELLQQAGCQIRYVR 388
+R G ++D + TE + VD + ++VG RP +E ++
Sbjct: 239 VRDNGD-------FVEVDYQKKGSDKTETL-TVDRVMVSVGFRPRVEGFGLENTGVKLTE 290
Query: 389 ELGGHVAVRDEWLETTVRGIFVAGD-TAGIEEATTAMLEGKIA 430
G + + D+++ T V GI+ GD TA ++ A A +G +A
Sbjct: 291 R--GAIEI-DDYMRTNVDGIYAIGDVTAKLQLAHVAEAQGIVA 330
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.390
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169976577
Number of Sequences: 2977
Number of extensions: 7161084
Number of successful extensions: 26530
Number of sequences better than 1.0e-10: 40
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 26389
Number of HSP's gapped (non-prelim): 64
length of query: 481
length of database: 189,106,746
effective HSP length: 58
effective length of query: 423
effective length of database: 154,394,500
effective search space: 65308873500
effective search space used: 65308873500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)