BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0213 (PAB0213) DE:POLYFERREDOXIN related
         (168 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75144 polyferredoxin related PAB0213 - Pyrococcus abyssi (...   351  2e-96
pir||A71184 probable ferredoxin - Pyrococcus horikoshii >gi|3258...   327  4e-89

>pir||D75144 polyferredoxin related PAB0213 - Pyrococcus abyssi (strain Orsay)
           >gi|5457745|emb|CAB49235.1| (AJ248284) POLYFERREDOXIN
           related [Pyrococcus abyssi]
           Length = 168
           
 Score =  351 bits (892), Expect = 2e-96
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   MSEIPNYLRKGYITPDELFSIIPKPSEERLRQRPVAVPECPQRIPCTPCKEICPTGAIKM 60
           MSEIPNYLRKGYITPDELFSIIPKPSEERLRQRPVAVPECPQRIPCTPCKEICPTGAIKM
Sbjct: 1   MSEIPNYLRKGYITPDELFSIIPKPSEERLRQRPVAVPECPQRIPCTPCKEICPTGAIKM 60

Query: 61  ENPNDIPIVDYEKCIGCSLCVQVCPGLAFFMIQYIGDKARITLPHELLPLPRRGEEVVLL 120
           ENPNDIPIVDYEKCIGCSLCVQVCPGLAFFMIQYIGDKARITLPHELLPLPRRGEEVVLL
Sbjct: 61  ENPNDIPIVDYEKCIGCSLCVQVCPGLAFFMIQYIGDKARITLPHELLPLPRRGEEVVLL 120

Query: 121 NRIGEEVGKGRVIAVVPRERTKGDTPIVTVEVPIELAWDVRAIKVVRE 168
           NRIGEEVGKGRVIAVVPRERTKGDTPIVTVEVPIELAWDVRAIKVVRE
Sbjct: 121 NRIGEEVGKGRVIAVVPRERTKGDTPIVTVEVPIELAWDVRAIKVVRE 168


>pir||A71184 probable ferredoxin - Pyrococcus horikoshii
           >gi|3258181|dbj|BAA30864.1| (AP000007) 168aa long
           hypothetical ferredoxin [Pyrococcus horikoshii]
           Length = 168
           
 Score =  327 bits (830), Expect = 4e-89
 Identities = 151/168 (89%), Positives = 162/168 (95%)

Query: 1   MSEIPNYLRKGYITPDELFSIIPKPSEERLRQRPVAVPECPQRIPCTPCKEICPTGAIKM 60
           MSEIPNYL+ GYITP+ELFSIIPKPSE+RLR+RPVAVPECPQRIPCTPCKE+CPT AIKM
Sbjct: 1   MSEIPNYLKYGYITPEELFSIIPKPSEKRLRERPVAVPECPQRIPCTPCKEVCPTNAIKM 60

Query: 61  ENPNDIPIVDYEKCIGCSLCVQVCPGLAFFMIQYIGDKARITLPHELLPLPRRGEEVVLL 120
           +NPNDIPIVDYEKCIGCSLCVQVCPGLAFFMI Y+GDKARITLPHELLPLP RGEEV+LL
Sbjct: 61  DNPNDIPIVDYEKCIGCSLCVQVCPGLAFFMIHYVGDKARITLPHELLPLPERGEEVILL 120

Query: 121 NRIGEEVGKGRVIAVVPRERTKGDTPIVTVEVPIELAWDVRAIKVVRE 168
           NR GEEVG+GRVI VVPRE+TKGDTPIVTVEVP+ELAWDVRAIKVVRE
Sbjct: 121 NRKGEEVGRGRVITVVPREKTKGDTPIVTVEVPLELAWDVRAIKVVRE 168


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.144    0.447 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69282433
Number of Sequences: 2977
Number of extensions: 3057391
Number of successful extensions: 8452
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8449
Number of HSP's gapped (non-prelim): 2
length of query: 168
length of database: 189,106,746
effective HSP length: 48
effective length of query: 120
effective length of database: 160,379,370
effective search space: 19245524400
effective search space used: 19245524400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)