BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0214 (soxB) DE:sarcosine oxidase, subunit beta (soxB)
(379 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75144 sarcosine oxidase, chain beta (soxb) PAB0214 - Pyroc... 791 0.0
pir||B71184 probable sarcosine oxidase - Pyrococcus horikoshii >... 705 0.0
pir||F71008 probable sarcosine oxidase - Pyrococcus horikoshii >... 420 e-116
pir||G75122 sarcosine oxidase, chain beta (soxb) PAB1843 - Pyroc... 414 e-114
gi|11497890 sarcosine oxidase, subunit beta (soxB) [Archaeoglobu... 190 3e-47
sp|Q63342|M2GD_RAT DIMETHYLGLYCINE DEHYDROGENASE, MITOCHONDRIAL ... 158 1e-37
gi|11417071 dimethylglycine dehydrogenase precursor [Homo sapiens] 155 8e-37
gi|7019365 dimethylglycine dehydrogenase precursor [Homo sapiens... 155 8e-37
gb|AAD03414.1| (AF067650) sarcosine dehydrogenase [Rattus norveg... 129 4e-29
gb|AAD32214.1| (AF140745) sarcosine dehydrogenase [Homo sapiens]... 129 4e-29
gb|AAD53398.2|AF095735_1 (AF095735) sarcosine dehydrogenase [Hom... 129 4e-29
gb|AAD13137.1| (AF047190) dimethylglycine dehydrogenase-like pro... 129 6e-29
gi|8923708 hypothetical protein [Homo sapiens] >gi|11437505|ref|... 124 1e-27
sp|P40875|SAOX_CORS1 SARCOSINE OXIDASE BETA SUBUNIT (SARCOSINE O... 123 3e-27
gb|AAC48785.1| (AF026954) pyruvate dehydrogenase phosphatase reg... 118 8e-26
gb|AAK40533.1| Sarcosine oxidase, subunit beta (soxB-like) [Sulf... 118 1e-25
gb|AAD13136.1| (AF047004) dimethylglycine dehydrogenase-like pro... 115 9e-25
gb|AAF57379.1| (AE003789) CG3270 gene product [Drosophila melano... 112 6e-24
gb|AAF57796.1| (AE003802) CG6385 gene product [Drosophila melano... 111 1e-23
pir||E72254 conserved hypothetical protein - Thermotoga maritima... 108 1e-22
gi|10955084 agaE [Agrobacterium tumefaciens] >gi|11352852|pir||T... 106 6e-22
pir||H82968 sarcosine oxidase beta subunit PA5416 [imported] - P... 105 8e-22
dbj|BAB05153.1| (AP001512) glycine oxidase (sarcosine oxidase) [... 103 3e-21
sp|O31616|GLOX_BACSU GLYCINE OXIDASE >gi|7475812|pir||B69845 sar... 102 7e-21
gb|AAD53399.2|AF095736_1 (AF095736) unknown [Homo sapiens] 102 7e-21
gi|6005868 sarcosine dehydrogenase; dimethylglycine dehydrogenas... 101 1e-20
gb|AAB03674.1| (U62481) dimethylglycine dehydrogenase-like prote... 96 7e-19
dbj|BAB05760.1| (AP001514) unknown conserved protein [Bacillus h... 93 4e-18
sp|O87388|SAOX_RHIME SARCOSINE OXIDASE BETA SUBUNIT (SARCOSINE O... 92 8e-18
pir||F83487 hypothetical protein PA1267 [imported] - Pseudomonas... 92 1e-17
pir||H83370 hydrogen cyanide synthase HcnC PA2195 [imported] - P... 91 2e-17
gb|AAK42656.1| Glycerol-3-phosphate dehydrogenase chain A (glpA)... 90 5e-17
sp|Q52671|SAOX_RHOCA SARCOSINE OXIDASE BETA SUBUNIT (SARCOSINE O... 87 4e-16
pir||E82983 probable oxidoreductase PA5309 [imported] - Pseudomo... 83 7e-15
gb|AAC38596.1| (AF053760) hydrogen cyanide synthase HcnC [Pseudo... 83 7e-15
pir||H70361 conserved hypothetical protein aq_707 - Aquifex aeol... 82 1e-14
pir||C83407 hypothetical protein PA1918 [imported] - Pseudomonas... 80 3e-14
pir||G83298 conserved hypothetical protein PA2776 [imported] - P... 79 7e-14
gb|AAG20146.1| (AE005092) glycerol-3-phosphate dehydrogenase cha... 79 7e-14
pir||S76505 hypothetical protein - Synechocystis sp. (strain PCC... 79 1e-13
gb|AAA96395.1| (U38892) N-terminal and C-terminal ends are simil... 79 1e-13
sp|P44732|ORDL_HAEIN PROBABLE OXIDOREDUCTASE ORDL >gi|1073832|pi... 77 4e-13
sp|O32159|YURR_BACSU HYPOTHETICAL 39.4 KD OXIDOREDUCTASE IN HOM-... 76 6e-13
pir||B75218 glycerol-3-phosphate dehydrogenase (glpa) PAB0183 - ... 75 1e-12
sp|P37906|ORDL_ECOLI PROBABLE OXIDOREDUCTASE ORDL >gi|7449558|pi... 74 2e-12
dbj|BAB09014.1| (AB007645) contains similarity to unknown protei... 73 4e-12
emb|CAC11772.1| (AL445064) glycerol-3-phosphate dehydrogenase re... 71 2e-11
pir||G81179 oxidoreductase, probable NMB0614 [imported] - Neisse... 71 2e-11
pir||B83078 probable D-amino acid oxidase PA4548 [imported] - Ps... 71 2e-11
pir||T35488 probable oxidoreductase - Streptomyces coelicolor (f... 70 4e-11
sp|P43799|GLPA_HAEIN ANAEROBIC GLYCEROL-3-PHOSPHATE DEHYDROGENAS... 69 6e-11
>pir||F75144 sarcosine oxidase, chain beta (soxb) PAB0214 - Pyrococcus abyssi
(strain Orsay) >gi|5457747|emb|CAB49237.1| (AJ248284)
sarcosine oxidase, subunit beta (soxB) [Pyrococcus
abyssi]
Length = 379
Score = 791 bits (2020), Expect = 0.0
Identities = 379/379 (100%), Positives = 379/379 (100%)
Query: 1 MIGVIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKY 60
MIGVIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKY
Sbjct: 1 MIGVIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKY 60
Query: 61 SIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKE 120
SIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKE
Sbjct: 61 SIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKE 120
Query: 121 IVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWK 180
IVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWK
Sbjct: 121 IVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWK 180
Query: 181 IKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLVCPP 240
IKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLVCPP
Sbjct: 181 IKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLVCPP 240
Query: 241 AWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHVHVVRQ 300
AWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHVHVVRQ
Sbjct: 241 AWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHVHVVRQ 300
Query: 301 WAGHYAKTPDNNPAIGELVEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRTKVPLDWEW 360
WAGHYAKTPDNNPAIGELVEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRTKVPLDWEW
Sbjct: 301 WAGHYAKTPDNNPAIGELVEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRTKVPLDWEW 360
Query: 361 YDPYRFERGELRTSAFQIG 379
YDPYRFERGELRTSAFQIG
Sbjct: 361 YDPYRFERGELRTSAFQIG 379
>pir||B71184 probable sarcosine oxidase - Pyrococcus horikoshii
>gi|3258182|dbj|BAA30865.1| (AP000007) 377aa long
hypothetical sarcosine oxidase [Pyrococcus horikoshii]
Length = 377
Score = 705 bits (1801), Expect = 0.0
Identities = 329/379 (86%), Positives = 361/379 (94%), Gaps = 2/379 (0%)
Query: 1 MIGVIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKY 60
MIG+IGGGIIG+ATAYELAKLGEEV+VFEKRYFGSGSTFRCASGIRAQFTDEANI+LMKY
Sbjct: 1 MIGIIGGGIIGIATAYELAKLGEEVIVFEKRYFGSGSTFRCASGIRAQFTDEANIRLMKY 60
Query: 61 SIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKE 120
SI++WK+LSEEL + +MFQQTGYLFLAT+EEEV+AFK+NIKLQN+FGVPTKLITPEEAKE
Sbjct: 61 SIDKWKKLSEELEYEVMFQQTGYLFLATSEEEVKAFKRNIKLQNKFGVPTKLITPEEAKE 120
Query: 121 IVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWK 180
IVPPLN + FLAGAWNPEDGKASPFHTLY YK+AGEKLGV+FYPYTEV+ I + KW
Sbjct: 121 IVPPLNADAFLAGAWNPEDGKASPFHTLYGYKRAGEKLGVRFYPYTEVIGIK--KNDKWI 178
Query: 181 IKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLVCPP 240
IKTT+GEF VDVIVNATNAWG RINSMIGKDIVPI PFKHQLVKTEP+ERGQIEPLVCPP
Sbjct: 179 IKTTRGEFRVDVIVNATNAWGRRINSMIGKDIVPIKPFKHQLVKTEPIERGQIEPLVCPP 238
Query: 241 AWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHVHVVRQ 300
AW+DSYVIQDGEDGGVICGTALEYK +PDDVTPTYDFVKE LKWAVKI+PAL+HVH++RQ
Sbjct: 239 AWSDSYVIQDGEDGGVICGTALEYKGNPDDVTPTYDFVKEALKWAVKIVPALKHVHIIRQ 298
Query: 301 WAGHYAKTPDNNPAIGELVEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRTKVPLDWEW 360
WAG+YAKTPDNNPAIGEL EDFYVAIGFSGHGFMMAPAV+QALAE+IVKG+TKVPLDWEW
Sbjct: 299 WAGYYAKTPDNNPAIGELEEDFYVAIGFSGHGFMMAPAVSQALAEKIVKGKTKVPLDWEW 358
Query: 361 YDPYRFERGELRTSAFQIG 379
+DPYRFERGELR+SAFQIG
Sbjct: 359 FDPYRFERGELRSSAFQIG 377
>pir||F71008 probable sarcosine oxidase - Pyrococcus horikoshii
>gi|3257787|dbj|BAA30470.1| (AP000006) 382aa long
hypothetical sarcosine oxidase [Pyrococcus horikoshii]
Length = 382
Score = 420 bits (1067), Expect = e-116
Identities = 213/382 (55%), Positives = 277/382 (71%), Gaps = 11/382 (2%)
Query: 2 IGVIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYS 61
I VIGGGI+GV A+ELAK GEEV V EKR+ GSGSTFRC +GIR QF DEAN+++MK S
Sbjct: 8 IVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIGSGSTFRCGTGIRQQFNDEANVRVMKRS 67
Query: 62 IERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
+E WK+ SEE G + F+QTGYLFL +EEV+ FK+NI++QN+FGVPTKLITPEEAKEI
Sbjct: 68 VELWKKYSEEYGFS--FKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEI 125
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWKI 181
VP L++ E +A +WNP DGKA PF A+ ++ G K YTEV +
Sbjct: 126 VPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGV 185
Query: 182 KTTKGEFEVDVIVNATNAWGSRINSMIG-KDIVPITPFKHQLVKTEPLERGQIEPLVCPP 240
KT KG + ++VNATNAW + IN+M G K +PI P+KHQ V T+P++RG I P+V
Sbjct: 186 KTNKGIIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQPIKRGTINPMVISF 245
Query: 241 AWNDSYVIQDGEDGGVICGTALEYKSDPD-DVTPTYDFVKEVLKWAVKIIPALRHVHVVR 299
+ +Y+ Q GG+I G + Y+ P D+TPTY+F++EV + KIIPAL+++ ++R
Sbjct: 246 KYGHAYLTQTFH-GGIIGG--IGYEIGPTYDLTPTYEFLREVSYYFTKIIPALKNLLILR 302
Query: 300 QWAGHYAKTPDNNPAIGELVE--DFYVAIGFSGHGFMMAPAVAQALAERIVKGRTKVPLD 357
WAG+YAKTPD+NPAIG + E D+Y+A GFSGHGFMMAPAV + +AE I KG+TK+P+
Sbjct: 303 TWAGYYAKTPDSNPAIGRIEELNDYYIAAGFSGHGFMMAPAVGEMVAELITKGKTKLPV- 361
Query: 358 WEWYDPYRFERGELRTSAFQIG 379
EWYDPYRFERGELRT+A Q+G
Sbjct: 362 -EWYDPYRFERGELRTAALQMG 382
>pir||G75122 sarcosine oxidase, chain beta (soxb) PAB1843 - Pyrococcus abyssi
(strain Orsay) >gi|5458207|emb|CAB49696.1| (AJ248285)
sarcosine oxidase, subunit beta (soxB) [Pyrococcus
abyssi]
Length = 382
Score = 414 bits (1052), Expect = e-114
Identities = 209/380 (55%), Positives = 275/380 (72%), Gaps = 11/380 (2%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSIE 63
VIGGGI+GV+ A+ELAK G +V V EKR+ GSGSTFRC +GIR QF DEAN+++MK S+E
Sbjct: 10 VIGGGIVGVSIAHELAKRGVDVTVLEKRFIGSGSTFRCGTGIRQQFNDEANVRVMKRSVE 69
Query: 64 RWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEIVP 123
WK+ SEE +N F+QTGYLFL EEEVE FK+NI++QN+FGVPT+LITPEEAKEIVP
Sbjct: 70 LWKKYSEE--YNFSFKQTGYLFLLYDEEEVETFKRNIEIQNKFGVPTRLITPEEAKEIVP 127
Query: 124 PLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWKIKT 183
L++ E +A +WNP DGKA PF A+ + G K YTEV +KT
Sbjct: 128 LLDISEVIAASWNPTDGKADPFEATTAFAIKAREYGAKLLEYTEVKGFIIENGEIKGVKT 187
Query: 184 TKGEFEVDVIVNATNAWGSRINSMIG-KDIVPITPFKHQLVKTEPLERGQIEPLVCPPAW 242
+G + ++VNATNAW IN+M G K +PI P+KHQ V T+P++RG I P+V +
Sbjct: 188 NRGTIKTGIVVNATNAWAKLINAMAGIKVKIPIEPYKHQAVITQPIKRGTINPMVISFKY 247
Query: 243 NDSYVIQDGEDGGVICGTALEYKSDPD-DVTPTYDFVKEVLKWAVKIIPALRHVHVVRQW 301
+Y+ Q GG+I G + Y+ P D+TPTY+F++EV + KIIPAL+++ V+R W
Sbjct: 248 GHAYLTQTFH-GGIIGG--IGYEIGPTYDLTPTYEFLREVSYYFTKIIPALKNLLVLRTW 304
Query: 302 AGHYAKTPDNNPAIGELVE--DFYVAIGFSGHGFMMAPAVAQALAERIVKGRTKVPLDWE 359
AG+YAKTPD+NPAIG++ E D+Y+A GFSGHGFMMAPAV + +A+ I KG++K+P+ E
Sbjct: 305 AGYYAKTPDSNPAIGKIEELSDYYIAAGFSGHGFMMAPAVGEMIADLITKGKSKLPV--E 362
Query: 360 WYDPYRFERGELRTSAFQIG 379
WYDPYRFERGELRT+A Q+G
Sbjct: 363 WYDPYRFERGELRTAALQMG 382
>gi|11497890 sarcosine oxidase, subunit beta (soxB) [Archaeoglobus fulgidus]
>gi|7483942|pir||B69284 sarcosine oxidase, subunit beta
(soxB) homolog - Archaeoglobus fulgidus
>gi|2650362|gb|AAB90958.1| (AE001086) sarcosine oxidase,
subunit beta (soxB) [Archaeoglobus fulgidus]
Length = 354
Score = 190 bits (477), Expect = 3e-47
Identities = 117/356 (32%), Positives = 192/356 (53%), Gaps = 13/356 (3%)
Query: 2 IGVIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYS 61
+ VIGGG+ G++ AY LAK G +V VFE++Y G++ R + G+ AQFT+EA IKL K +
Sbjct: 3 VAVIGGGVAGLSAAYFLAKAGADVKVFEQKYLLYGASGRNSGGLTAQFTNEAMIKLAKRT 62
Query: 62 IERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
+E + EL E+G N + ++ GY+ +A EE + ++ ++ Q + GV K++ PE KE+
Sbjct: 63 LELYDELQSEVGFNFLLRRDGYVKIAGKGEEAK-LREEVEFQRKAGVKVKMVEPEFVKEL 121
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEV-VWIDGGREHKWK 180
P +N F A ++ + G P+ ++ K +LGV+ Y YT V + G +
Sbjct: 122 FPDINTSAFTAASYFADGGVVFPWPVVWGLAKGCRELGVEIYDYTPASVEVKG---NDLT 178
Query: 181 IKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLVCPP 240
+K + ++VD I+NA AW + I+ G ++ F+ ++ TE L +P + P
Sbjct: 179 VKASGESYKVDYIINAAGAWSNEISQQAGVEL-NNKVFREEICVTESL-----KPYLDPY 232
Query: 241 AWNDSYVIQDGED-GGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHVHVVR 299
+ S + + G I G L ++D + + DF+ K +++P LR + V+R
Sbjct: 233 IMDISTGVYFSQSMRGEIVGGILGSETDRLETKASLDFLTTYAKRVTELVPKLRGMAVLR 292
Query: 300 QWAGHYAKTPDNNPAIGEL-VEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRTKV 354
QWAG Y + P IG+ V F GF HG +A A + +AE IVKGR+ +
Sbjct: 293 QWAGLYDAGRNGMPVIGQTKVRGFIQLNGFGRHGMSLALAAGEGVAELIVKGRSSI 348
>sp|Q63342|M2GD_RAT DIMETHYLGLYCINE DEHYDROGENASE, MITOCHONDRIAL PRECURSOR (ME2GLYDH)
>gi|111583|pir||S16133 dimethylglycine dehydrogenase (EC
1.5.99.2) - rat >gi|56689|emb|CAA39468.1| (X55995)
dimethylglycine dehydrogenase [Rattus norvegicus]
Length = 857
Score = 158 bits (395), Expect = 1e-37
Identities = 122/391 (31%), Positives = 186/391 (47%), Gaps = 40/391 (10%)
Query: 4 VIGGGIIGVATAYELAKLG-EEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKY-S 61
+IGGG +GV+ AY LAK G +VV+ EK +GST+ A+G+ F N+K + Y S
Sbjct: 47 IIGGGCVGVSLAYHLAKAGMRDVVLLEKSELTAGSTWH-AAGLTTYFHPGINLKKIHYDS 105
Query: 62 IERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
I+ ++ L EE G + F Q G + LATT E V+ FK + N +I PE+ E+
Sbjct: 106 IKLYERLEEETGQVVGFHQPGSIRLATTPERVDEFKYQMTRTNWHATEQYIIEPEKIHEL 165
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWKI 181
P LN+++ LAG +NP DG P+ A K GV V + + W +
Sbjct: 166 FPLLNMDKILAGLYNPGDGHIDPYSLTMALATGARKYGVLLKYPAPVTSLKPRPDGTWDV 225
Query: 182 KTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTE--PLERGQIEPLVCP 239
+T +G + IVNA W + MIG D P+ P +HQ V T P + L
Sbjct: 226 ETPQGSVRANRIVNAAGFWAREVGKMIGLD-HPLIPVQHQYVVTSTIPEVKALKRELPVL 284
Query: 240 PAWNDSYVIQDGEDG---------------------GVICGTALE-YKSDPDDVTPTYDF 277
SY ++ DG GV G E ++SD D +T
Sbjct: 285 RDLEGSYYLRQERDGLLFGPYESQEKMKLQASWVAHGVPPGFGKELFESDLDRIT----- 339
Query: 278 VKEVLKWAVKIIPALRHVHVVRQWAGHYAKTPDNNPAIG--ELVEDFYVAIGFSGHGFMM 335
E ++ A++++P L+ ++ G +PD P +G + V +++VAIGF G+G +
Sbjct: 340 --EHVEAAMEMVPVLKKADIINIVNGPITYSPDILPMVGPHQGVRNYWVAIGF-GYGIIH 396
Query: 336 APAVAQALAERIVKGRTKVPLDWEWYDPYRF 366
A V + L++ I+ G + P D DP R+
Sbjct: 397 AGGVGKYLSDWILHG--EPPFDLIELDPNRY 425
>gi|11417071 dimethylglycine dehydrogenase precursor [Homo sapiens]
Length = 866
Score = 155 bits (388), Expect = 8e-37
Identities = 116/384 (30%), Positives = 183/384 (47%), Gaps = 26/384 (6%)
Query: 4 VIGGGIIGVATAYELAKLG-EEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKY-S 61
+IGGG +GV+ AY LAK G ++VV+ EK +GST+ A+G+ F N+K + Y S
Sbjct: 54 IIGGGCVGVSLAYHLAKAGMKDVVLLEKSELTAGSTWH-AAGLTTYFHPGINLKKIHYDS 112
Query: 62 IERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
I+ +++L EE G + F Q G + LATT V+ FK + LI PE+ +E+
Sbjct: 113 IKLYEKLEEETGQVVGFHQPGSIRLATTPVRVDEFKYQMTRTGWHATEQYLIEPEKIQEM 172
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWKI 181
P LN+ + LAG +NP DG P+ A K G V + + W +
Sbjct: 173 FPLLNMNKVLAGLYNPGDGHIDPYSLTMALAAGARKCGALLKYPAPVTSLKARSDGTWDV 232
Query: 182 KTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLVCPPA 241
+T +G + IVNA W + MIG + P+ P +HQ V T + + P
Sbjct: 233 ETPQGSMRANRIVNAAGFWAREVGKMIGLE-HPLIPVQHQYVVTSTISEVKALKRELPVL 291
Query: 242 --WNDSYVIQDGEDGGVICGTALEYKSDPDD------VTPTY---------DFVKEVLKW 284
SY ++ DG + + K D V P + D + E +K
Sbjct: 292 RDLEGSYYLRQERDGLLFGPYESQEKMKVQDSWVTNGVPPGFGKELFESDLDRIMEHIKA 351
Query: 285 AVKIIPALRHVHVVRQWAGHYAKTPDNNPAIG--ELVEDFYVAIGFSGHGFMMAPAVAQA 342
A++++P L+ ++ G +PD P +G + V +++VAIGF G+G + A V +
Sbjct: 352 AMEMVPVLKKADIINVVNGPITYSPDILPMVGPHQGVRNYWVAIGF-GYGIIHAGGVGKY 410
Query: 343 LAERIVKGRTKVPLDWEWYDPYRF 366
L++ I+ G + P D DP R+
Sbjct: 411 LSDWILHG--EPPFDLIELDPNRY 432
>gi|7019365 dimethylglycine dehydrogenase precursor [Homo sapiens]
>gi|11133608|sp|Q9UI17|M2GD_HUMAN DIMETHYLGLYCINE
DEHYDROGENASE, MITOCHONDRIAL PRECURSOR (ME2GLYDH)
>gi|6650622|gb|AAF21941.1|AF111858_1 (AF111858)
dimethylglycine dehydrogenase precursor [Homo sapiens]
Length = 866
Score = 155 bits (388), Expect = 8e-37
Identities = 116/384 (30%), Positives = 183/384 (47%), Gaps = 26/384 (6%)
Query: 4 VIGGGIIGVATAYELAKLG-EEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKY-S 61
+IGGG +GV+ AY LAK G ++VV+ EK +GST+ A+G+ F N+K + Y S
Sbjct: 54 IIGGGCVGVSLAYHLAKAGMKDVVLLEKSELTAGSTWH-AAGLTTYFHPGINLKKIHYDS 112
Query: 62 IERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
I+ +++L EE G + F Q G + LATT V+ FK + LI PE+ +E+
Sbjct: 113 IKLYEKLEEETGQVVGFHQPGSIRLATTPVRVDEFKYQMTRTGWHATEQYLIEPEKIQEM 172
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWKI 181
P LN+ + LAG +NP DG P+ A K G V + + W +
Sbjct: 173 FPLLNMNKVLAGLYNPGDGHIDPYSLTMALAAGARKCGALLKYPAPVTSLKARSDGTWDV 232
Query: 182 KTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLVCPPA 241
+T +G + IVNA W + MIG + P+ P +HQ V T + + P
Sbjct: 233 ETPQGSMRANRIVNAAGFWAREVGKMIGLE-HPLIPVQHQYVVTSTISEVKALKRELPVL 291
Query: 242 --WNDSYVIQDGEDGGVICGTALEYKSDPDD------VTPTY---------DFVKEVLKW 284
SY ++ DG + + K D V P + D + E +K
Sbjct: 292 RDLEGSYYLRQERDGLLFGPYESQEKMKVQDSWVTNGVPPGFGKELFESDLDRIMEHIKA 351
Query: 285 AVKIIPALRHVHVVRQWAGHYAKTPDNNPAIG--ELVEDFYVAIGFSGHGFMMAPAVAQA 342
A++++P L+ ++ G +PD P +G + V +++VAIGF G+G + A V +
Sbjct: 352 AMEMVPVLKKADIINVVNGPITYSPDILPMVGPHQGVRNYWVAIGF-GYGIIHAGGVGKY 410
Query: 343 LAERIVKGRTKVPLDWEWYDPYRF 366
L++ I+ G + P D DP R+
Sbjct: 411 LSDWILHG--EPPFDLIELDPNRY 432
>gb|AAD03414.1| (AF067650) sarcosine dehydrogenase [Rattus norvegicus]
Length = 919
Score = 129 bits (322), Expect = 4e-29
Identities = 106/384 (27%), Positives = 173/384 (44%), Gaps = 30/384 (7%)
Query: 4 VIGGGIIGVATAYELAKLGEE-VVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSI 62
VIGGG +G T Y LAKLG VV+ E+ SG+T+ A + + ++L+ ++
Sbjct: 72 VIGGGSLGCQTLYHLAKLGVGGVVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLAHTR 131
Query: 63 ERWK-ELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
+ +L EE G + + Q G LF+A+ ++ ++ +K+ + L +G+ + +++P E K++
Sbjct: 132 QVVSHDLEEETGLHTGWIQNGGLFIASNQQRLDEYKRLMSLGKAYGIESHVLSPAETKDL 191
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWI-----DGGRE 176
P +NV++ + P DG P T +A G + V I D G
Sbjct: 192 YPLMNVDDLYGTLYVPRDGTMDPAGTCTTLTRAAVARGAQVIENCAVTGIRVRTDDFGVR 251
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPL 236
++T G + +VN W S + M G VP+ H V TE +E Q P
Sbjct: 252 RVTAVETQHGSIQTPCVVNCAGVWASSVGRMAGVK-VPLVAMHHAYVVTERIEGIQNMPN 310
Query: 237 VCPPAWNDSYVIQDGEDGGVICGTALEYKSDP---DDVTPTYDFVKEVLKW--------- 284
V +D+ V + + G Y+++P D+V+ + F L W
Sbjct: 311 VRD---HDASVYLRLQGDALSVG---GYEANPIFWDEVSDKFAFGLFDLDWDVFTQHIEG 364
Query: 285 AVKIIPALRHVHVVRQWAGHYAKTPDNNPAIGELVE--DFYVAIGFSGHGFMMAPAVAQA 342
A+ +P L + G + TPD+ P +GE E F++ GF+ G M+ Q
Sbjct: 365 AINRVPVLEKTGIKSTVCGPESFTPDHKPLMGEAPELRGFFLGCGFNSAGMMLGGGCGQE 424
Query: 343 LAERIVKGRTKVPLDWEWYDPYRF 366
LA IV GR + D YD RF
Sbjct: 425 LAHWIVHGRPE--KDMYSYDIRRF 446
>gb|AAD32214.1| (AF140745) sarcosine dehydrogenase [Homo sapiens]
>gi|5453465|gb|AAD43585.1|AF162428_1 (AF162428)
sarcosine dehydrogenase [Homo sapiens]
Length = 918
Score = 129 bits (322), Expect = 4e-29
Identities = 107/384 (27%), Positives = 174/384 (44%), Gaps = 30/384 (7%)
Query: 4 VIGGGIIGVATAYELAKLGEE-VVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSI 62
VIGGG +G T Y LAKLG V+ E+ SG+T+ A + + ++L+ ++
Sbjct: 71 VIGGGSLGCQTLYHLAKLGMSGAVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLAHTR 130
Query: 63 ERW-KELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
+EL EE G + + Q G LF+A+ + ++ +K+ + L +GV + +++P E K +
Sbjct: 131 RVVSRELEEETGLHTGWIQNGGLFIASNRQRLDEYKRLMSLGKAYGVESHVLSPAETKTL 190
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLG---VKFYPYTEV-VWIDG-GRE 176
P +NV++ + P DG P T +A G ++ P T + VW D G
Sbjct: 191 YPLMNVDDLYGTLYVPHDGTMDPAGTCTTLARAASARGAQVIENCPVTGIRVWTDDFGVR 250
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPL 236
++T G + +VN W S + M G VP+ H V TE +E Q P
Sbjct: 251 RVAGVETQHGSIQTPCVVNCAGVWASAVGRMAGVK-VPLVAMHHAYVVTERIEGIQNMPN 309
Query: 237 VCPPAWNDSYVIQDGEDGGVICGTALEYKSDP---DDVTPTYDFVKEVLKW--------- 284
V +D+ V + + G Y+++P ++V+ + F L W
Sbjct: 310 VRD---HDASVYLRLQGDALSVG---GYEANPIFWEEVSDKFAFGLFDLDWEVFTQHIEG 363
Query: 285 AVKIIPALRHVHVVRQWAGHYAKTPDNNPAIGELVE--DFYVAIGFSGHGFMMAPAVAQA 342
A+ +P L + G + TPD+ P +GE E F++ GF+ G M+ Q
Sbjct: 364 AINRVPVLEKTGIKSTVCGPESFTPDHKPLMGEAPELRGFFLGCGFNSAGMMLGGGCGQE 423
Query: 343 LAERIVKGRTKVPLDWEWYDPYRF 366
LA I+ GR + D YD RF
Sbjct: 424 LAHWIIHGRPE--KDMHGYDIRRF 445
>gb|AAD53398.2|AF095735_1 (AF095735) sarcosine dehydrogenase [Homo sapiens]
Length = 918
Score = 129 bits (322), Expect = 4e-29
Identities = 107/384 (27%), Positives = 174/384 (44%), Gaps = 30/384 (7%)
Query: 4 VIGGGIIGVATAYELAKLGEE-VVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSI 62
VIGGG +G T Y LAKLG V+ E+ SG+T+ A + + ++L+ ++
Sbjct: 71 VIGGGSLGCQTLYHLAKLGMSGAVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLAHTR 130
Query: 63 ERW-KELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
+EL EE G + + Q G LF+A+ + ++ +K+ + L +GV + +++P E K +
Sbjct: 131 RVVSRELEEETGLHTGWIQNGGLFIASNRQRLDEYKRLMSLGKAYGVESHVLSPAETKTL 190
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLG---VKFYPYTEV-VWIDG-GRE 176
P +NV++ + P DG P T +A G ++ P T + VW D G
Sbjct: 191 YPLMNVDDLYGTLYVPHDGTMDPAGTCTTLARAASARGAQVIENCPVTGIRVWTDDFGVR 250
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPL 236
++T G + +VN W S + M G VP+ H V TE +E Q P
Sbjct: 251 RVAGVETQHGSIQTPCVVNCAGVWASAVGRMAGVK-VPLVAMHHAYVVTERIEGIQNMPN 309
Query: 237 VCPPAWNDSYVIQDGEDGGVICGTALEYKSDP---DDVTPTYDFVKEVLKW--------- 284
V +D+ V + + G Y+++P ++V+ + F L W
Sbjct: 310 VRD---HDASVYLRLQGDALSVG---GYEANPIFWEEVSDKFAFGLFDLDWEVFTQHIEG 363
Query: 285 AVKIIPALRHVHVVRQWAGHYAKTPDNNPAIGELVE--DFYVAIGFSGHGFMMAPAVAQA 342
A+ +P L + G + TPD+ P +GE E F++ GF+ G M+ Q
Sbjct: 364 AINRVPVLEKTGIKSTVCGPESFTPDHKPLMGEAPELRGFFLGCGFNSAGMMLGGGCGQE 423
Query: 343 LAERIVKGRTKVPLDWEWYDPYRF 366
LA I+ GR + D YD RF
Sbjct: 424 LAHWIIHGRPE--KDMHGYDIRRF 445
>gb|AAD13137.1| (AF047190) dimethylglycine dehydrogenase-like protein isoform 2;
putative sarcosine dehydrogenase [Homo sapiens]
>gi|4454259|emb|CAA11257.1| (AJ223317) sarcosine
dehydrogenase [Homo sapiens]
Length = 475
Score = 129 bits (321), Expect = 6e-29
Identities = 107/384 (27%), Positives = 174/384 (44%), Gaps = 30/384 (7%)
Query: 4 VIGGGIIGVATAYELAKLGEE-VVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSI 62
VIGGG +G T Y LAKLG V+ E+ SG+T+ A + + ++L+ ++
Sbjct: 71 VIGGGSLGCQTLYHLAKLGMSGAVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLAHTR 130
Query: 63 ERW-KELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
+EL EE G + + Q G LF+A+ + ++ +K+ + L +GV + +++P E K +
Sbjct: 131 RVVSRELEEETGLHTGWIQNGGLFIASNRQRLDEYKRLMSLGKAYGVESHVLSPAETKTL 190
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLG---VKFYPYTEV-VWIDG-GRE 176
P +NV++ + P DG P T +A G ++ P T + VW D G
Sbjct: 191 YPLMNVDDLYGTLYVPHDGTMDPAGTCTTLARAASARGAQVIENCPVTGIRVWTDDFGVR 250
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPL 236
++T G + +VN W S + M G VP+ H V TE +E Q P
Sbjct: 251 RVAGVETQHGSIQTPCVVNCAGVWASAVGRMAGVK-VPLVAMHHAYVVTERIEGIQNMPN 309
Query: 237 VCPPAWNDSYVIQDGEDGGVICGTALEYKSDP---DDVTPTYDFVKEVLKW--------- 284
V +D+ V + + G Y+++P ++V+ + F L W
Sbjct: 310 VRD---HDASVYLRLQGDALSVG---GYEANPIFWEEVSDKFAFGLFDLDWEVFTQHIEG 363
Query: 285 AVKIIPALRHVHVVRQWAGHYAKTPDNNPAIGELVE--DFYVAIGFSGHGFMMAPAVAQA 342
A+ +P L + G + TPD+ P +GE E F++ GF+ G M+ Q
Sbjct: 364 AINRVPVLEKTGIKSTVCGPESFTPDHKPLMGEAPELRGFFLGCGFNSVGMMLGGGCGQE 423
Query: 343 LAERIVKGRTKVPLDWEWYDPYRF 366
LA I+ GR + D YD RF
Sbjct: 424 LAHWIIHGRPE--KDMHGYDIRRF 445
>gi|8923708 hypothetical protein [Homo sapiens] >gi|11437505|ref|XP_006258.1|
hypothetical protein [Homo sapiens]
>gi|6048970|gb|AAF02421.1|AF103801_1 (AF103801) unknown
[Homo sapiens]
Length = 486
Score = 124 bits (309), Expect = 1e-27
Identities = 105/396 (26%), Positives = 177/396 (44%), Gaps = 51/396 (12%)
Query: 4 VIGGGIIGVATAYELAKLGEE-----VVVFEKRY-FGSGSTFRCASGIRAQFTDEANIKL 57
++GGG++G++ AY L KL V+V E+ + + ST GI QF+ NI+L
Sbjct: 68 IVGGGVLGLSVAYWLKKLESRRGAIRVLVVERDHTYSQASTGLSVGGICQQFSLPENIQL 127
Query: 58 MKYSIERWKELSEELGH------NIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTK 111
+S + ++E L ++ F +GYL LA+ E++ A + N+K+Q + G
Sbjct: 128 SLFSASFLRNINEYLAVVDAPPLDLRFNPSGYLLLAS-EKDAAAMESNVKVQRQEGAKVS 186
Query: 112 LITPEEAKEIVPPLNVEEFLAGAWNPED-GKASPFHTLYAYKKAGEKLGVKFYPYTEVVW 170
L++P++ + P +N E ++ ED G P+ L ++ + LGV F +
Sbjct: 187 LMSPDQLRNKFPWINTEGVALASYGMEDEGWFDPWCLLQGLRRKVQSLGVLFCQGEVTRF 246
Query: 171 IDGG--------------REHKWKIKTTKG----EFEVDVIVNATNAWGSRINSMIGKDI 212
+ R H+ +K + E +++NA AW ++I ++ G
Sbjct: 247 VSSSQRMLTTDDKAVVLKRIHEVHVKMDRSLEYQPVECAIVINAAGAWSAQIAALAGVGE 306
Query: 213 VPITPFKHQLVKTEPLER-----------GQIEPLVCPPAWNDSYVIQDGEDGGVICGTA 261
P + + EP +R G PLV + +Y ++G + G +
Sbjct: 307 GPPGTLQGTKLPVEPRKRYVYVWHCPQGPGLETPLVADTS--GAYFRREGLGSNYLGGRS 364
Query: 262 LEYKSDPDDVTPTYD---FVKEVLKWAVKIIPALRHVHVVRQWAGHYA-KTPDNNPAIGE 317
+ +PD D F +V +PA + V WAG+Y T D N +G
Sbjct: 365 PTEQEEPDPANLEVDHDFFQDKVWPHLALRVPAFETLKVQSAWAGYYDYNTFDQNGVVGP 424
Query: 318 --LVEDFYVAIGFSGHGFMMAPAVAQALAERIVKGR 351
LV + Y A GFSGHG AP + +A+AE ++KGR
Sbjct: 425 HPLVVNMYFATGFSGHGLQQAPGIGRAVAEMVLKGR 460
>sp|P40875|SAOX_CORS1 SARCOSINE OXIDASE BETA SUBUNIT (SARCOSINE OXIDASE SUBUNIT B)
>gi|2127436|pir||I40887 sarcosine oxidase (EC 1.5.3.1)
beta chain [validated] - Corynebacterium sp
>gi|927589|gb|AAC43459.1| (U23955) sarcosine oxidase
beta subunit [Corynebacterium sp.]
Length = 405
Score = 123 bits (306), Expect = 3e-27
Identities = 100/379 (26%), Positives = 165/379 (43%), Gaps = 21/379 (5%)
Query: 4 VIGGGIIGVATAYELAKLG--EEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYS 61
++GGG G+ATAY LAK V V EK + G+ R + IR+ + + + + + S
Sbjct: 26 IVGGGGHGLATAYYLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIYEKS 85
Query: 62 IERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
++ W++L EEL ++ +F Q G L LA T +V + ++ GV + +TPE+ KE+
Sbjct: 86 LKLWEQLPEELDYDFLFSQRGVLNLAHTLGDVRESVRRVEANKFNGVDAEWLTPEQVKEV 145
Query: 122 VPPLNVEE-----FLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGRE 176
P +N+ + + + P G A H +A+ + ++GV EV E
Sbjct: 146 CPIINIGDDIRYPVMGATYQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFLKDGE 205
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPL 236
+KTT+G + A S + + G ++ PI Q + +E E + P
Sbjct: 206 KVTGVKTTRGTIHAGKVALAGAGHSSVLAELAGFEL-PIQSHPLQALVSELFE--PVHPT 262
Query: 237 VCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHVH 296
V YV Q G ++ G ++ + + ++E + AV++ P H
Sbjct: 263 VVMSNHIHVYVSQ-AHKGELVMGAGIDSYNGYGQ-RGAFHVIEEQMAAAVELFPIFARAH 320
Query: 297 VVRQWAGHYAKTPDNNPAIGEL-VEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRT--- 352
V+R W G T D +P I + +++ YV G+ GF P LA I
Sbjct: 321 VLRTWGGIVDTTMDASPIISKTPIQNLYVNCGWGTGGFKGTPGAGFTLAHTIANDEAHAL 380
Query: 353 KVPLDWEWYDPYRFERGEL 371
P E RFE G L
Sbjct: 381 NAPFSLE-----RFETGHL 394
>gb|AAC48785.1| (AF026954) pyruvate dehydrogenase phosphatase regulatory subunit
precursor; PDPr [Bos taurus]
Length = 878
Score = 118 bits (294), Expect = 8e-26
Identities = 92/367 (25%), Positives = 166/367 (45%), Gaps = 27/367 (7%)
Query: 4 VIGGGIIGVATAYELAKLG-EEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSI 62
V GGGI+G + AY L+K+G ++VV+ E+ +GST CA + K+ YS
Sbjct: 46 VCGGGIMGTSVAYHLSKMGWKDVVLLEQGRLAAGSTRFCAGILSTARHLAIEQKMADYSN 105
Query: 63 ERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEIV 122
+ + +L +E G + +TG +FLA T++ + + K+ N G+P ++I+P++ E+
Sbjct: 106 KLYHQLEQETGIQTGYTRTGSIFLAQTQDRLISLKRINSRLNVIGIPCEIISPKKVAELH 165
Query: 123 PPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWKIK 182
P LNV + + PED S A A + GV+ Y T ++ + + ++
Sbjct: 166 PLLNVHDLVGAMHVPEDAVVSSADVALALASAASQSGVQIYDRTSILHVMVKKGQVAGVE 225
Query: 183 TTKGEFEVDVIVNATNAWGSRINSMIGKDI-VPITPFKHQLVKTEPLERGQIEPLVCPPA 241
T KG+ + VN W + + + +P+ +H + T P E PL P+
Sbjct: 226 TDKGQIQCQYFVNCAGQWAYELGLCSEEPVSIPLHACEHFYLLTRPWE----TPL---PS 278
Query: 242 WNDSYVIQDGE------DGGVICG----------TALEYKSDPDDVTPTYDFVKEVLKWA 285
+ V DG GG++ G T + + + ++ +D + +L
Sbjct: 279 STPTVVDADGRIYIRNWQGGILSGGFEKNPKPIFTEGKNQLEIQNLQEDWDHFEPLLSSL 338
Query: 286 VKIIPALRHVHVVRQWAGHYAKTPDNNPAIGE--LVEDFYVAIGFSGHGFMMAPAVAQAL 343
++ +P L + +V+ TPD +GE V ++V +G + G + L
Sbjct: 339 LRRMPQLETLEIVKLVNCPETFTPDMRCIMGESPSVRGYFVLVGMNSAGLSFGGGAGKYL 398
Query: 344 AERIVKG 350
AE +V G
Sbjct: 399 AEWMVYG 405
>gb|AAK40533.1| Sarcosine oxidase, subunit beta (soxB-like) [Sulfolobus
solfataricus]
Length = 372
Score = 118 bits (292), Expect = 1e-25
Identities = 104/379 (27%), Positives = 178/379 (46%), Gaps = 22/379 (5%)
Query: 1 MIGVIGGGIIGVATAYELAKLG---EEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKL 57
MI ++G G G++ AY L K G +++ + E + G GS+ R A+ R F + N++
Sbjct: 1 MIIIVGAGSHGLSLAYHLVKKGYSKKDITLVEWKRIGYGSSSRNAARYRYHFYSKENVEY 60
Query: 58 MKYSIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEE 117
+I K+ S+EL +N + +TGYL++ E+E FKK + + + K I E
Sbjct: 61 AINAISYLKKQSKELEYNSLLLRTGYLWVINGEQEYSLFKKLDSFWSSYNIGGKFI---E 117
Query: 118 AKEIVPPLNVEE--FLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGR 175
K+ + E +LA P+DG + LY+Y + + Y + D +
Sbjct: 118 CKDNYAYIKFEGQCYLA----PQDGAFHHDYILYSYYYSIKDKVSTIYDKVVSLIKDDSK 173
Query: 176 EHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEP 235
K+ + K + VIV A AW + S IG + VPI P K ++ TEPL R +EP
Sbjct: 174 IKGVKLSSGKELYGDKVIVTA-GAWSGEVLSSIGIE-VPIFPEKKEIYITEPL-RYFLEP 230
Query: 236 LVCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHV 295
L+ G +I G + + ++ T + + LK ++I + +
Sbjct: 231 LIIDSKL--QIYFSQTLKGEIIGGIEDKREYKFEEFTISISNAIKFLKGIRELIKGIDGI 288
Query: 296 HVVRQWAGHYAKTPDNNPAIG---ELVEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRT 352
++R W+G+Y TPD++ +G + E ++ G+SGHG M AP + +A+ I
Sbjct: 289 GILRGWSGYYEMTPDSSQIMGYSNDWPEGLFIDAGYSGHGMMFAPYSGKIMADLIADNYK 348
Query: 353 KVPLDWEWYDPYRFERGEL 371
+D + P RF+ +L
Sbjct: 349 NKFID--IFSPSRFKLNKL 365
>gb|AAD13136.1| (AF047004) dimethylglycine dehydrogenase-like protein isoform 1;
putative sarcosine dehydrogenase [Homo sapiens]
Length = 431
Score = 115 bits (285), Expect = 9e-25
Identities = 95/350 (27%), Positives = 159/350 (45%), Gaps = 28/350 (8%)
Query: 4 VIGGGIIGVATAYELAKLGEE-VVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSI 62
VIGGG +G T Y LAKLG V+ E+ SG+T+ A + + ++L+ ++
Sbjct: 71 VIGGGSLGCQTLYHLAKLGMSGAVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLAHTR 130
Query: 63 ERW-KELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
+EL EE G + + Q G LF+A+ + ++ +K+ + L +GV + +++P E K +
Sbjct: 131 RVVSRELEEETGLHTGWIQNGGLFIASNRQRLDEYKRLMSLGKAYGVESHVLSPAETKTL 190
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLG---VKFYPYTEV-VWIDG-GRE 176
P +NV++ + P DG P T +A G ++ P T + VW D G
Sbjct: 191 YPLMNVDDLYGTLYVPHDGTMDPAGTCTTLARAASARGAQVIENCPVTGIRVWTDDFGVR 250
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPL 236
++T G + +VN W S + M G VP+ H V TE +E Q P
Sbjct: 251 RVAGVETQHGSIQTPCVVNCAGVWASAVGRMAGVK-VPLVAMHHAYVVTERIEGIQNMPN 309
Query: 237 VCPPAWNDSYVIQDGEDGGVICGTALEYKSDP---DDVTPTYDFVKEVLKW--------- 284
V +D+ V + + G Y+++P ++V+ + F L W
Sbjct: 310 VRD---HDASVYLRLQGDALSVG---GYEANPIFWEEVSDKFAFGLFDLDWEVFTQHIEG 363
Query: 285 AVKIIPALRHVHVVRQWAGHYAKTPDNNPAIGELVE--DFYVAIGFSGHG 332
A+ +P L + G + TPD+ P +GE E F++ GF+ G
Sbjct: 364 AINRVPVLEKTGIKSTVCGPESFTPDHKPLMGEAPELRGFFLGCGFNSAG 413
>gb|AAF57379.1| (AE003789) CG3270 gene product [Drosophila melanogaster]
Length = 440
Score = 112 bits (278), Expect = 6e-24
Identities = 108/382 (28%), Positives = 165/382 (42%), Gaps = 37/382 (9%)
Query: 4 VIGGGIIGVATAYELA----KLGEEV---VVFEKRYFGSGSTFRCASGIRAQFTDEANIK 56
+IGGG +G ++A+ L +LG ++ VV + S ST G+R QF+ NI+
Sbjct: 36 IIGGGGMGASSAFWLKSRALQLGRKLNVLVVERDAGYTSASTVLSVGGVRQQFSLAENIE 95
Query: 57 LMKYSIERWKELSEELGH-NIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITP 115
+ + E LG ++ +Q GYL LA+ E+ KN KLQN G +L+ P
Sbjct: 96 MSLFGYNFVVNGREHLGDVDLCYQPNGYLILAS-EKGAHILAKNSKLQNELGARNELLGP 154
Query: 116 EEAKEIVPPLNVEEFLAGAWN-PEDGKASPFHTLYAYKKAGEKLGVKFYPYTEV--VWID 172
E ++ P L+ E G ++G P+ L YKK LG F + V W D
Sbjct: 155 EALRQRFPWLSTEGVELGCHGIDKEGWFDPWALLMGYKKKARALGANFANGSVVGFEWND 214
Query: 173 GGREHKWKI---KTTKGEFEVDVIVNATNAWGSRINSMIG-----------KDIVPITPF 218
G + + + D V A A+ ++ + G +P+ P
Sbjct: 215 SGGLSGAVVDAGDVLQRTVKFDTCVLAAGAYSGQVARLAGIGDKEAKEASLSVALPVEPR 274
Query: 219 KH--QLVKTEPLE-RGQIEPLVCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTY 275
K +V T+ G PL P + +Y +DG G +CG + +P+ T
Sbjct: 275 KRYVYVVSTQGKNCPGLATPLTVDP--DGTYFRRDGLCGNFLCGRSPNEDEEPECETLDV 332
Query: 276 D---FVKEVLKWAVKIIPALRHVHVVRQWAGHY-AKTPDNNPAIGE--LVEDFYVAIGFS 329
D F +V +PA V + WAG Y T D N IG + ++A GFS
Sbjct: 333 DHGYFETDVWPTLANRVPAFESVKIQSSWAGFYDHNTFDANGVIGRHPHYSNLFIAAGFS 392
Query: 330 GHGFMMAPAVAQALAERIVKGR 351
GHG PAV +A++E I+ G+
Sbjct: 393 GHGIQQTPAVGRAISELILDGK 414
>gb|AAF57796.1| (AE003802) CG6385 gene product [Drosophila melanogaster]
Length = 894
Score = 111 bits (276), Expect = 1e-23
Identities = 89/371 (23%), Positives = 169/371 (44%), Gaps = 25/371 (6%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSIE 63
VIGGG G T Y LA+ G + V+ E+ +G+T+ A + ++ +I+L+ S
Sbjct: 41 VIGGGSAGCHTLYHLARRGVKAVLLERAQLTAGTTWHTAGLLWRLRPNDVDIQLLANSRR 100
Query: 64 RWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEIVP 123
++L EE + + Q G +F+A E ++ +++ + + G+ ++++PE+ +++ P
Sbjct: 101 MLQQLEEETELDPGWIQNGGIFIAHNETRLDEYRRLATVGSALGIENQVLSPEDTQKLFP 160
Query: 124 PLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWK--- 180
L+ F+ ++P DG P A KKA LG + V + + + K
Sbjct: 161 LLDPSAFVGALYSPGDGVMDPAMLCAALKKAATNLGAQVIENCGVDDLLLEQTARGKKVV 220
Query: 181 -IKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLVCP 239
+ T G+ + + +VNAT WG + + G + P+ P KH + +E + + P +
Sbjct: 221 GVSTPFGDIKAEKVVNATGVWGRDLVARHGTHL-PLVPMKHAYIVSESIPGVRGLPNIRD 279
Query: 240 PAWNDSYVIQDGEDGGVICGTALEYKSDP---DDVTPTYDFVKEVLKWAV---------K 287
++ + IQ G IC Y+ +P + V + F L W+V K
Sbjct: 280 HDYSTYFRIQ----GDAICMGG--YEPNPILLEPVPKDFHFGLYELDWSVFETHVEGAQK 333
Query: 288 IIPALRHVHVVRQWAGHYAKTPDNNPAIG--ELVEDFYVAIGFSGHGFMMAPAVAQALAE 345
+ P+ V G + TPD+ P +G ++ Y GF+ G M + A
Sbjct: 334 LCPSYAKYGVKSTVCGPESFTPDHKPLMGPDPNLDGLYHNCGFNSAGMMFGGGCGEQTAL 393
Query: 346 RIVKGRTKVPL 356
+++G+ +P+
Sbjct: 394 WVIQGQPDLPM 404
>pir||E72254 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981997|gb|AAD36502.1|AE001795_5 (AE001795)
conserved hypothetical protein [Thermotoga maritima]
Length = 479
Score = 108 bits (267), Expect = 1e-22
Identities = 88/365 (24%), Positives = 172/365 (47%), Gaps = 14/365 (3%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRY-FGSGSTFRCASGIRAQFTDEANIKLMKYSI 62
VIGGG+ G A EL K EV + EK G G T ++ + A + D ++
Sbjct: 5 VIGGGVFGSLIARELTKYDLEVTLIEKNLDVGWGVTKANSAVVHAGYDDPPESVRAQFCA 64
Query: 63 E---RWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVP-TKLITPEEA 118
+++LS+EL + F++ G +A +EE++ ++ +K GVP ++ +E
Sbjct: 65 SGNAMYEDLSKELDFD--FKRIGSFVVAFNDEELKELERLLKQGEENGVPGLTILERDEV 122
Query: 119 KEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHK 178
+ P LN E A + P G P+ A + + G+K VV +
Sbjct: 123 LSMEPNLNPEVKYA-LYAPTAGITEPWMVAIAAVENAVQNGLKLVLGESVVGFEKVNGRV 181
Query: 179 WKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLVC 238
K+ T++GE+E D+++N I + G + VP+ P K + + + +G ++ ++
Sbjct: 182 RKVHTSRGEYEADIVINCAGLHADEIAKLAGAEYVPLHPRKGEYILLDKKLQGLVKRVIF 241
Query: 239 PPAWNDS--YVIQDGEDGGVICGTALEYKSD--PDDVTPTYDFVKEVLKWAVKIIPALRH 294
P S ++ DGG++ G E + D T + +++V ++ +++P+L
Sbjct: 242 PTPTKISKGILVLPTVDGGILLGPTAEDLPEEMKDRPITTREGLEKVREFTRRLVPSLDF 301
Query: 295 VHVVRQWAGHYAKTPDNN--PAIGELVEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRT 352
VV+ ++G ++P + + E V++F + G APAVA+ + E +++ +
Sbjct: 302 SLVVKTFSGLRPESPQKDFFIKVSETVKNFVNVMATRSPGLTAAPAVAKYVVEELIQEKM 361
Query: 353 KVPLD 357
++PL+
Sbjct: 362 RIPLE 366
>gi|10955084 agaE [Agrobacterium tumefaciens] >gi|11352852|pir||T45533 agaE
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665709|gb|AAB88469.1| (AF242881) agaE
[Agrobacterium tumefaciens]
Length = 437
Score = 106 bits (261), Expect = 6e-22
Identities = 98/420 (23%), Positives = 157/420 (37%), Gaps = 67/420 (15%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSIE 63
VIGGGI+GV+TA ELA+ G V + EK + R +R D + I L S+
Sbjct: 23 VIGGGIVGVSTALELAERGISVALCEKGLIAGEQSGRNWGWVRQMGRDASEIPLAVESLN 82
Query: 64 RWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEIVP 123
WK L+ +G F+QTG +L + ++ + + G+ ++L+ EE ++ +P
Sbjct: 83 LWKGLNARIGEETGFRQTGIAYLCRNTRQEAEYEAWLVHARKHGLDSRLLKKEELRQHLP 142
Query: 124 PLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWKIKT 183
+ + F A DG+A P A + + G V I+ + T
Sbjct: 143 GM-ADGFTAALHTSTDGRAEPSKAAPAIARGAIRAGAHIITGCAVRSIERSGGAVSGVVT 201
Query: 184 TKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLVCPPAWN 243
+G +V A AW + +G D F + +E + P
Sbjct: 202 ERGRIACSSVVLAGGAWSRLFSGNMGID------FPQLKILATVARATSVEGVPDMPVGA 255
Query: 244 DSYVIQDGEDG--GVICGTALEYKSDPDDVTPTYDFVKEVLK------------------ 283
D++ + +DG + A PD DF+ ++K
Sbjct: 256 DNFSFRRRQDGSFNIAMRNANVAPIVPDSFRLFTDFMPTLIKGWDELTLRVGSRFIEEWR 315
Query: 284 ----WA-----------------------------VKIIPALRHVHVVRQWAGHYAKTPD 310
WA VK PA + + WAG TPD
Sbjct: 316 TPRSWAADAISPFEQVRILDPKPFERFNREGLAHLVKAFPAFADSRITQSWAGLIDVTPD 375
Query: 311 NNPAIGEL--VEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRTKVPLDWEWYDPYRFER 368
P IG + F++A GFSGHGF + P + +A+ + + V P+RF+R
Sbjct: 376 AIPVIGPAGGIPGFFIASGFSGHGFGIGPGSGKLMADLVTNAQPSVD-----PAPFRFDR 430
>pir||H82968 sarcosine oxidase beta subunit PA5416 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951743|gb|AAG08801.1|AE004954_3 (AE004954)
sarcosine oxidase beta subunit [Pseudomonas aeruginosa]
Length = 416
Score = 105 bits (260), Expect = 8e-22
Identities = 87/355 (24%), Positives = 159/355 (44%), Gaps = 13/355 (3%)
Query: 4 VIGGGIIGVATAYELAKLG--EEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYS 61
++GGG G+ATAY LAK V V EK + G G+T R + +R+ + + + L +++
Sbjct: 37 IVGGGGHGLATAYYLAKEHGISNVAVVEKGWLGGGNTARNTTIVRSNYLWDESALLYEHA 96
Query: 62 IERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
++ W+ LS++L +N+MF Q G L T +++ ++ + GV +L+ ++ E
Sbjct: 97 MKLWEGLSQDLNYNVMFSQRGVYNLCHTLQDMRDGERRVSANRLNGVDGELLNAQQVAEE 156
Query: 122 VPPLNVEE-----FLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGRE 176
+P L+ + + G A + + +A + LGV TEV
Sbjct: 157 IPYLDCSKSTRYPIMGATIQRRGGVARHDAVAWGFARAADALGVDLIQQTEVTGFRKQDG 216
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPL 236
++T +G F V A S + + +P+ Q + +EPL + I+ +
Sbjct: 217 AVIGVETNRG-FIGARRVGVVTAGNSGHMARLAGFRLPLESHPLQALVSEPL-KPIIDSV 274
Query: 237 VCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHVH 296
+ A + I + G ++ G ++ + +Y ++ L+ V++ P L V
Sbjct: 275 IMSNAVHG--YISQSDKGDLVIGAGIDGYNGYGQ-RGSYPVIEHTLQAIVEMFPVLSRVR 331
Query: 297 VVRQWAGHYAKTPDNNPAIGEL-VEDFYVAIGFSGHGFMMAPAVAQALAERIVKG 350
+ RQW G TPD P IG+ V++ + G+ GF P A + KG
Sbjct: 332 MNRQWGGIVDTTPDACPIIGKTPVQNLFFNCGWGTGGFKATPGSGNVFAATLAKG 386
>dbj|BAB05153.1| (AP001512) glycine oxidase (sarcosine oxidase) [Bacillus
halodurans]
Length = 365
Score = 103 bits (255), Expect = 3e-21
Identities = 93/374 (24%), Positives = 168/374 (44%), Gaps = 23/374 (6%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEAN-----IKLM 58
V+GGG+IG+A A+EL G +V V E+ G G A+G+ A F++ L
Sbjct: 3 VLGGGVIGLAVAFELKVRGHQVTVLEQGLCG-GQASGAAAGMLAPFSEIGEDPNDFFHLA 61
Query: 59 KYSIER---WKELSEEL-GHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLIT 114
S++ W++ +E+ G + + Q+G L E + + Q FGV +++++
Sbjct: 62 HESLKMYPDWQQAVKEISGKSFEYVQSGSLHCVYHEADFLELESRQHWQGTFGVESEILS 121
Query: 115 PEEAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGG 174
++ + + P ++ +E + + PE+ + A + KLGV + I+
Sbjct: 122 QQQIRALEPNIS-DEIIGAIYYPEESHLFAPDYVKALEIGCRKLGVTIEDEVGHISIEAW 180
Query: 175 REHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIE 234
EH+ + ++ D ++ AW S VP+ P + Q+ E + G +
Sbjct: 181 MEHQVLRGPSGKQWAGDRLIVCAGAWASEHEETFSLR-VPVYPIRGQICAYE-VPAGDVR 238
Query: 235 PLVCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRH 294
+V + Y++ G +G V+ G + + D T T +K + W I P L
Sbjct: 239 HIVYT---SQGYIVPKG-NGTVVNGASEDIAG--YDTTVTEQGIKRLTNWNGHIFPFLNE 292
Query: 295 VHVVRQWAGHYAKTPDNNPAIGELVEDFYV--AIGFSGHGFMMAPAVAQALAERIVKGRT 352
+ WAG T D P IGE + +V A G +G +++P A+ +A+ + +T
Sbjct: 293 LTPFHTWAGLRPATQDGYPMIGETKKAPHVVFATGHYRNGILLSPITAKVVADVVEGKKT 352
Query: 353 KVPLDWEWYDPYRF 366
+VPL +DP RF
Sbjct: 353 EVPL--TMFDPMRF 364
>sp|O31616|GLOX_BACSU GLYCINE OXIDASE >gi|7475812|pir||B69845 sarcosine oxidase homolog
yjbR - Bacillus subtilis >gi|2633521|emb|CAB13024.1|
(Z99110) similar to sarcosine oxidase [Bacillus
subtilis]
Length = 369
Score = 102 bits (252), Expect = 7e-21
Identities = 102/378 (26%), Positives = 170/378 (43%), Gaps = 32/378 (8%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCAS--GIRAQFTD-EANIKLMKY 60
VIGGGIIG A AY LAK + +FE G +T A G A+ + +A +
Sbjct: 9 VIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMH 68
Query: 61 SIERWKELSEEL----GHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPE 116
S +K L EEL G +I G LA +EE+V ++ L + + E
Sbjct: 69 SQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDS-----VSWYSKE 123
Query: 117 EAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGRE 176
E E P + + F A ++ +D P+ AY KA + LG + + +T V+ ++ E
Sbjct: 124 EVLEKEPYASGDIFGA-SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGE 182
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPL 236
+ IKT G+ + +V A+ W +G + + VK E L +
Sbjct: 183 ALF-IKTPSGDVWANHVVVASGVWSGMFFKQLGLNNAFLP------VKGECLSVWNDDIP 235
Query: 237 VCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDF--VKEVLKWAVKIIPALRH 294
+ ++D I + G ++ G ++ P D + T D ++ V+K A ++PA+++
Sbjct: 236 LTKTLYHDHCYIVPRKSGRLVVGATMK----PGDWSETPDLGGLESVMKKAKTMLPAIQN 291
Query: 295 VHVVRQWAGHYAKTPDNNPAIGELVEDFYV--AIGFSGHGFMMAPAVAQALAERIVKGRT 352
+ V R WAG T D P IG ED + A G +G ++APA +++ I+
Sbjct: 292 MKVDRFWAGLRPGTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKE- 350
Query: 353 KVPLDWEWYDPYRFERGE 370
++ +W +R +R E
Sbjct: 351 ---VNQDWLHAFRIDRKE 365
>gb|AAD53399.2|AF095736_1 (AF095736) unknown [Homo sapiens]
Length = 328
Score = 102 bits (252), Expect = 7e-21
Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 8/241 (3%)
Query: 4 VIGGGIIGVATAYELAKLGEE-VVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSI 62
VIGGG +G T Y LAKLG V+ E+ SG+T+ A + + ++L+ ++
Sbjct: 27 VIGGGSLGCQTLYHLAKLGMSGAVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLAHTR 86
Query: 63 ERW-KELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
+EL EE G + + Q G LF+A+ + ++ +K+ + L +GV + +++P E K +
Sbjct: 87 RVVSRELEEETGLHTGWIQNGGLFIASNRQRLDEYKRLMSLGKAYGVESHVLSPAETKTL 146
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLG---VKFYPYTEV-VWIDG-GRE 176
P +NV++ + P DG P T +A G ++ P T + VW D G
Sbjct: 147 YPLMNVDDLYGTLYVPHDGTMDPAGTCTTLARAASARGAQVIENCPVTGIRVWTDDFGVR 206
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPL 236
++T G + +VN W S + M G VP+ H V TE +E Q P
Sbjct: 207 RVAGVETQHGSIQTPCVVNCAGVWASAVGRMAGVK-VPLVAMHHAYVVTERIEGIQNMPN 265
Query: 237 V 237
V
Sbjct: 266 V 266
>gi|6005868 sarcosine dehydrogenase; dimethylglycine dehydrogenase-like 1 [Homo
sapiens] >gi|11429603|ref|XP_005639.1| sarcosine
dehydrogenase [Homo sapiens] >gi|5902972|gb|AAD53400.2|
(AF095737) unknown [Homo sapiens]
Length = 396
Score = 101 bits (250), Expect = 1e-20
Identities = 68/233 (29%), Positives = 112/233 (47%), Gaps = 8/233 (3%)
Query: 4 VIGGGIIGVATAYELAKLGEE-VVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSI 62
VIGGG +G T Y LAKLG V+ E+ SG+T+ A + + ++L+ ++
Sbjct: 71 VIGGGSLGCQTLYHLAKLGMSGAVLLERERLTSGTTWHTAGLLWQLRPSDVEVELLAHTR 130
Query: 63 ERW-KELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
+EL EE G + + Q G LF+A+ + ++ +K+ + L +GV + +++P E K +
Sbjct: 131 RVVSRELEEETGLHTGWIQNGGLFIASNRQRLDEYKRLMSLGKAYGVESHVLSPAETKTL 190
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLG---VKFYPYTEV-VWIDG-GRE 176
P +NV++ + P DG P T +A G ++ P T + VW D G
Sbjct: 191 YPLMNVDDLYGTLYVPHDGTMDPAGTCTTLARAASARGAQVIENCPVTGIRVWTDDFGVR 250
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLE 229
++T G + +VN W S + M G VP+ H V TE +E
Sbjct: 251 RVAGVETQHGSIQTPCVVNCAGVWASAVGRMAGVK-VPLVAMHHAYVVTERIE 302
>gb|AAB03674.1| (U62481) dimethylglycine dehydrogenase-like protein [Rattus
norvegicus] >gi|1449112|gb|AAB04667.1| (L79910)
dimethylglycine dehydrogenase [Rattus norvegicus]
Length = 278
Score = 96.0 bits (235), Expect = 7e-19
Identities = 66/241 (27%), Positives = 111/241 (45%), Gaps = 8/241 (3%)
Query: 4 VIGGGIIGVATAYELAKLGEEVV-VFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSI 62
VIGGG +G T Y LAKLG V +R SG+T+ A + + ++L+ ++
Sbjct: 32 VIGGGSLGCQTLYHLAKLGVSGVGAAGERAMTSGTTWHTAGLLWQLRPSDVEVELLAHTR 91
Query: 63 ERWK-ELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
+ +L EE G + + Q G F+A+ ++ ++ +K+ + L +G+ + +++P E K++
Sbjct: 92 QVVSHDLEEETGLHTGWIQNGGFFIASNQQRLDEYKRLMSLGKAYGIESHVLSPAETKDL 151
Query: 122 VPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWI-----DGGRE 176
P +NV++ + P DG P T +A G + V I D G
Sbjct: 152 YPLMNVDDLYGTLYVPRDGTMDPAGTCTTLTRAAVARGAQVIENCAVTGIRVRTDDFGVR 211
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPL 236
++T G + +VN W S + M G VP+ H V TE +E Q P
Sbjct: 212 RVTAVETQHGSIQTPCVVNCAGVWASSVGRMAGVK-VPLVAMHHAYVVTERIEGIQNMPN 270
Query: 237 V 237
V
Sbjct: 271 V 271
>dbj|BAB05760.1| (AP001514) unknown conserved protein [Bacillus halodurans]
Length = 376
Score = 93.2 bits (228), Expect = 4e-18
Identities = 91/363 (25%), Positives = 157/363 (43%), Gaps = 37/363 (10%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFG-------SGSTFRCASGI-RAQFTDEANI 55
+IGGG+IG++ A AK G V+V EK G +G A G+ R +
Sbjct: 9 IIGGGVIGLSIAIHTAKKGANVLVVEKDRLGQEASGGRAGLLTTVAEGVDRHDPYSIFSR 68
Query: 56 KLMKYSIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITP 115
+ ++Y ++ EL E+ + + L LA E+E + + +Q K ++
Sbjct: 69 ESLQYLLQWIPELEEKTQISSGLVKQNLLRLALHEQEAALLEDHWLMQTETNSQIKRLSA 128
Query: 116 EEAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGR 175
EEA+ + P L+ + + +P++ P L A + +LGV TEV+
Sbjct: 129 EEARTLEPLLS-NDLIMAICSPDEYHLEPSLYLNALARMARQLGVTIREQTEVIQFIHQN 187
Query: 176 EHKWKIKTTKG-EFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIE 234
+ + T G + + + A AW S + S + K VP+ P K QL+ L++G +
Sbjct: 188 NRMYGVVTNTGTQIVAETTILAAGAW-SHLLSRLAKVKVPVYPLKGQLI---VLKQGDTD 243
Query: 235 PLVCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVT--------PTYDFVKEVLKWAV 286
V + Y++ +G V+ G E + +T P +D+V E+ W +
Sbjct: 244 LNVMINT-SKGYILSK-PNGTVVLGATSEKEKFNKFITAKGIQELLPLFDYVPELKNWEI 301
Query: 287 KIIPALRHVHVVRQWAGHYAKTPDNNPAIGELV--EDFYVAIGFSGHGFMMAPAVAQALA 344
+ + WAG TPD P IG + E +Y+A G S HG +++ +A
Sbjct: 302 QHL-----------WAGLRPATPDGQPIIGYVPEWEGWYLATGHSRHGVLLSGWTGHLVA 350
Query: 345 ERI 347
E +
Sbjct: 351 EEL 353
>sp|O87388|SAOX_RHIME SARCOSINE OXIDASE BETA SUBUNIT (SARCOSINE OXIDASE SUBUNIT B)
>gi|3687680|gb|AAC62218.1| (AF055582) sarcosine oxidase
subunit B [Sinorhizobium meliloti]
Length = 416
Score = 92.4 bits (226), Expect = 8e-18
Identities = 95/376 (25%), Positives = 159/376 (42%), Gaps = 16/376 (4%)
Query: 4 VIGGGIIGVATAYELAK-LG-EEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYS 61
++GGG G+ATAY LAK G V V EK Y GSG+ R + IR+ + N + S
Sbjct: 36 IVGGGGHGLATAYYLAKEFGITNVAVLEKNYIGSGNVGRNTTIIRSNYLLPGNNPFYELS 95
Query: 62 IERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
++ W+ L ++ N M Q G L L ++ + +A+ + GV +L+ +++
Sbjct: 96 MKLWEGLEQDFNFNAMVSQRGVLNLFHSDAQRDAYTRRGNAMRLHGVDAELLYRAAVRKM 155
Query: 122 VPPLNVEE----FLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREH 177
+P L+ + G G + Y + + GV EV I
Sbjct: 156 LPFLDFDNARFPIQGGLLQRRGGTVRHDAVAWGYARGADSRGVDIIQNCEVTGIRRENGR 215
Query: 178 KWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLV 237
++T++G + A S++ M G + PI Q +E L + I+ +V
Sbjct: 216 VIGVETSRGFIGCAKLALAAAGNSSQVAEMAGLRL-PIESHVLQAFVSEGL-KPFIDGVV 273
Query: 238 CPPAWNDSYVIQDGEDGGVICGTALE-YKSDPDDVTPTYDFVKEVLKWAVKIIPALRHVH 296
A + + + + GG++ G ++ Y S V+ V + +IPAL V
Sbjct: 274 TFGAGH--FYVSQSDKGGLVFGGDIDGYNSYAQ--RGNLATVEHVAEAGKAMIPALSRVR 329
Query: 297 VVRQWAGHYAKTPDNNPAIGEL-VEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRTKVP 355
V+R W G + D +P I +++ Y+ G+ GF PA A + +G +
Sbjct: 330 VLRSWGGIMDMSMDGSPIIDRTPIDNLYLNAGWCYGGFKATPASGFCFAHLLARGAPQKT 389
Query: 356 LDWEWYDPYRFERGEL 371
D RFERG L
Sbjct: 390 AAAFRLD--RFERGFL 403
>pir||F83487 hypothetical protein PA1267 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947200|gb|AAG04656.1|AE004556_6
(AE004556) hypothetical protein [Pseudomonas aeruginosa]
Length = 371
Score = 92.1 bits (225), Expect = 1e-17
Identities = 99/378 (26%), Positives = 165/378 (43%), Gaps = 37/378 (9%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSIE 63
V+G GI+G A A+ELA+ G +V+V + R G+T + A + A + L YS +
Sbjct: 7 VVGAGIVGSACAHELARRGLDVLVLDSRR--GGATAVGMGHLVAMDDNPAELALSDYSTQ 64
Query: 64 RWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEIVP 123
W+ + EL + ++ G L+LA E+ ++ + GV +++ + P
Sbjct: 65 AWRAWAAELPEDCAYRGCGTLWLAADASELAEAERKRQALQAAGVACRMLGAARLYALEP 124
Query: 124 PLNVEEFLAGAWNPE-DGKA-SPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWKI 181
L LAGA DG +P + +AG +L Y EV +DG R +
Sbjct: 125 ALRPG--LAGALEVSGDGILYAPNAARWLLDQAGPRLRRL---YAEVSEVDGSR-----L 174
Query: 182 KTTKGEF-EVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEP---------LERG 231
+ G + + +V A + + + PI P K L+ T+ +E G
Sbjct: 175 RLADGRWLSAEALVLANGIHAGELCAEL-----PIRPKKGHLLITDRYPGTLRHQLVELG 229
Query: 232 QIEPLVCPPAWNDSYVIQDGEDGGVICGTALEYKS-DPDDVTPTYDFVKEVLKWAVKIIP 290
+ + ++ Q G V G++ ++ + DP P + +L+ A+ +P
Sbjct: 230 YVSSAHASSGTSVAFNAQPRPTGQVFLGSSRQFDTLDPQVEGPV---LARMLRRALDYLP 286
Query: 291 ALRHVHVVRQWAGHYAKTPDNNPAIGE--LVEDFYVAIGFSGHGFMMAPAVAQALAERIV 348
L ++ +R W G A TPD P +GE ++A+G G G AP A+ LA ++
Sbjct: 287 GLAGLNAIRAWTGFRAATPDGLPLLGEHPAQPGLWLAVGHEGLGVTTAPGSARLLAAQLF 346
Query: 349 KGRTKVPLDWEWYDPYRF 366
G T PLD Y P RF
Sbjct: 347 -GETP-PLDPTPYLPQRF 362
>pir||H83370 hydrogen cyanide synthase HcnC PA2195 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|6644364|gb|AAF21030.1|AF208523_3 (AF208523) HcnC
[Pseudomonas aeruginosa]
>gi|9948217|gb|AAG05583.1|AE004646_4 (AE004646) hydrogen
cyanide synthase HcnC [Pseudomonas aeruginosa]
Length = 417
Score = 90.9 bits (222), Expect = 2e-17
Identities = 82/313 (26%), Positives = 142/313 (45%), Gaps = 23/313 (7%)
Query: 63 ERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEIV 122
E +EL E G + F++TG ++ +E+ + + + + + EE +
Sbjct: 109 ELHRELIERHGMDFKFERTGLKYVIQDDEDRQYAEHIVAQIPHLAEQVRWLDREELRRAE 168
Query: 123 PPLN-----VEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWI-DGGRE 176
P ++ EFL D + SPF AY +A + GV+ P T V + GR
Sbjct: 169 PAVSHAAHGALEFLC------DHQVSPFRLADAYLEAARQNGVELLPGTNVTGVLRQGRR 222
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPL 236
G ++NA AW + ++ M +P+ P K Q+V TE + R L
Sbjct: 223 ISGVRTDNAGVLHCRTLINAAGAWAAELSEMATGRRIPVKPVKGQIVLTERMPRLLNGCL 282
Query: 237 VCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHVH 296
+D Y+ Q ++G ++ G+ E K DV+ T+ + +++ AV+ +P L+ V+
Sbjct: 283 TT----SDCYMAQK-DNGEILIGSTTEDKGF--DVSNTFPEIAGLVQGAVRCVPELQQVN 335
Query: 297 VVRQWAGHYAKTPDNNPAIGEL--VEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRTKV 354
+ R WAG +PD P +G + VE + A G G ++ A+ L +R+V T +
Sbjct: 336 LKRTWAGLRPGSPDELPILGPVAEVEGYLNACGHFRTG-ILTSAITGVLLDRLVHEET-L 393
Query: 355 PLDWEWYDPYRFE 367
PLD + RF+
Sbjct: 394 PLDIAPFLAARFQ 406
>gb|AAK42656.1| Glycerol-3-phosphate dehydrogenase chain A (glpA) [Sulfolobus
solfataricus]
Length = 445
Score = 89.7 bits (219), Expect = 5e-17
Identities = 82/311 (26%), Positives = 142/311 (45%), Gaps = 20/311 (6%)
Query: 2 IGVIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFR----CASGIRAQFTDEANIKL 57
+ VIGGG+ G+ TA +LA G +V + ++ G G++ + SG R TD + +
Sbjct: 20 VTVIGGGVSGLFTALDLALRGIDVTLVDRGDIGYGTSGKFHGLLHSGARYAVTDPDSAR- 78
Query: 58 MKYSIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEE 117
I+ K +S+ H + + TG +FL T+++++ + IK N+ G+ +K+I +E
Sbjct: 79 --ECIQENKIISKIAPHTV--KDTGGVFLGITDDDLQFSETFIKALNKVGIESKVIDVKE 134
Query: 118 AKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWI------ 171
+ P +N + +A W P D + L + G K Y EVV I
Sbjct: 135 VLQKEPFINRDTKMA-IWVP-DKVVYGYDLLASVAITASLNGAKILTYNEVVEIIRENNN 192
Query: 172 DGGREHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERG 231
G + KI + D+IVN W I M G + +PI P +V +
Sbjct: 193 VKGVKVLDKINNNTNVIKSDIIVNTAGPWSFNIIKMAGLEEIPIMPTAGIIVVFDKRVNN 252
Query: 232 QIEPLVCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPA 291
+ + PP +D +I D ++ GT DPD+ T + + + ++ +IP
Sbjct: 253 MVINRLRPP--SDGDIIVPYADSSIL-GTTATIIEDPDNFTISDEDIAMLVNEGAYLIPK 309
Query: 292 LRHVHVVRQWA 302
L+++ VVR +A
Sbjct: 310 LKNMRVVRSYA 320
>sp|Q52671|SAOX_RHOCA SARCOSINE OXIDASE BETA SUBUNIT (SARCOSINE OXIDASE SUBUNIT B)
>gi|1353872|gb|AAB01814.1| (U46071) sarcosine oxidase
[Rhodobacter capsulatus]
Length = 208
Score = 86.6 bits (211), Expect = 4e-16
Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 4 VIGGGIIGVATAYELAKLG--EEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYS 61
V+G G G+ATAY L K+ + V + EK + G G+T R + IR+ + + + + + +
Sbjct: 37 VVGAGGHGLATAYYLGKVHGIKNVAIIEKGWLGGGNTGRNTTIIRSNYLQDPSAAIYEKA 96
Query: 62 IERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEI 121
++ LS++L +N+MF G L LA +E E+ +K+ + N V T+ I P+E K++
Sbjct: 97 RSLYEGLSQDLNYNVMFSPRGLLMLAQSEHEMRGYKRTVYANNLQNVETRWIEPKEVKKL 156
Query: 122 VPPLNVE----EFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEV 168
VP LN+ L + G A + Y +A +G+ TEV
Sbjct: 157 VPILNIAGPRYPVLGALLQEKGGTARHDAVAWGYARACSDMGMDLLQNTEV 207
>pir||E82983 probable oxidoreductase PA5309 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951625|gb|AAG08694.1|AE004943_10
(AE004943) probable oxidoreductase [Pseudomonas
aeruginosa]
Length = 439
Score = 82.7 bits (201), Expect = 7e-15
Identities = 91/375 (24%), Positives = 159/375 (42%), Gaps = 53/375 (14%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRC--------------------AS 43
V+GGG GV TA ELA+ G VV+ E G G++ R A
Sbjct: 42 VVGGGFSGVNTALELAQRGFSVVLLEAHQIGWGASGRNGGQLIRGVGHDVEQFLPVIGAD 101
Query: 44 GIRAQFTDEANIKLMKY-SIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKL 102
G++A +KLM ++E + E+ + + GY LA + + F+++++
Sbjct: 102 GVKA-------LKLMGLEAVEIVRRRVEQYAIDCDLRW-GYCDLANKPGDYQGFREDMEE 153
Query: 103 QNRFGV--PTKLITPEEAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGV 160
G +L+ E + ++ + ++ G + G P + + A + LGV
Sbjct: 154 LQALGYRHEMRLVPAAEMRSVI---GSDRYVGGLVDMGSGHLHPLNLVLGEAAAAQSLGV 210
Query: 161 KFYPYTEVVWIDGGREHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKH 220
+ + + V+ ID G E + + T G+ +V NA+ + +N ++G ++P +
Sbjct: 211 RLFERSTVMRIDYGTEVQ--VHTATGKVRAKTLVLGCNAYMNDLNPLLGGKVLPAGSY-- 266
Query: 221 QLVKTEPLERGQIEPLVCP-PAWNDSYVIQD----GEDGGVICGTALEYKS-DPDDVTPT 274
++ TEPL+ L+ A D V D D ++ G A Y DP D+
Sbjct: 267 -VIATEPLDEKLARQLLPQNMAVCDQRVALDYYRLSADNRLLFGGACHYSGRDPSDIAA- 324
Query: 275 YDFVKEVLKWAVKIIPALRHVHVVRQWAGHYAKTPDNNPAIGEL--VEDFYVAIGFSGHG 332
+++ + +++ P L +V + QW G + P IG L + Y A +SGHG
Sbjct: 325 --YMRPKM---LEVFPQLANVRIDYQWGGMIGIGANRLPQIGRLPGQPNVYFAQAYSGHG 379
Query: 333 FMMAPAVAQALAERI 347
Q LAE I
Sbjct: 380 VNATHLAGQLLAEAI 394
>gb|AAC38596.1| (AF053760) hydrogen cyanide synthase HcnC [Pseudomonas fluorescens]
Length = 417
Score = 82.7 bits (201), Expect = 7e-15
Identities = 99/403 (24%), Positives = 168/403 (41%), Gaps = 64/403 (15%)
Query: 4 VIGGGIIGVATAYELAKLGE-EVVVFEKRYFGSGST---------------------FRC 41
+ GGG+IG + AY+L+K + +V + + + G+ S FR
Sbjct: 9 IAGGGVIGASCAYQLSKRKDLKVALIDAKRPGNASRASAGGLWAIGESVGLGCGVIFFRM 68
Query: 42 ASGIR-------AQFTDEANIKLMKYSI--------ERWKELSEELG--HNI--MFQQTG 82
S R A D + ++ S E + L EL HN+ F+QTG
Sbjct: 69 MSANRKREAQGSAVVVDSSTPHILPQSFFDFALQSNELYPRLHRELMGLHNMDFKFEQTG 128
Query: 83 YLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAKEIVPPLNVE-----EFLAGAWNP 137
F+ EE+ + + + + + P ++ E EFL
Sbjct: 129 LKFVIYDEEDRLYAEHIVGCIPHLSDQVRWLDQAALRASEPNVSHEAQGALEFLC----- 183
Query: 138 EDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGREHKWKIKT-TKGEFEVDVIVNA 196
D + +PF AY + + GV Y T V + +KT G F ++NA
Sbjct: 184 -DHQVNPFRLTDAYTEGARQNGVDVYFNTNVTGVLHQGNRVSGVKTDVAGLFRCTTLINA 242
Query: 197 TNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEPLVCPPAWNDSYVIQDGEDGGV 256
AW + ++ +P+ P K Q++ TE + + L +D Y+ Q ++G +
Sbjct: 243 AGAWAAELSLQATGIEIPVKPVKGQILLTERMPKLLNGCLTT----SDCYMAQK-DNGEI 297
Query: 257 ICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHVHVVRQWAGHYAKTPDNNPAIG 316
+ G+ E K DVT TY + +++ AV+ +P L HV++ R WAG +PD P +G
Sbjct: 298 LIGSTTEDKGF--DVTTTYPEINGLVQGAVRCVPELAHVNLKRCWAGLRPGSPDELPILG 355
Query: 317 EL--VEDFYVAIGFSGHGFMMAPAVAQALAERIVKGRTKVPLD 357
+ VE + A G G ++ A+ L +++V +PLD
Sbjct: 356 PMDGVEGYLNACGHFRTG-ILTSAITGVLLDKLV-NEEALPLD 396
>pir||H70361 conserved hypothetical protein aq_707 - Aquifex aeolicus
>gi|2983300|gb|AAC06892.1| (AE000703) hypothetical
protein [Aquifex aeolicus]
Length = 353
Score = 81.9 bits (199), Expect = 1e-14
Identities = 101/376 (26%), Positives = 175/376 (45%), Gaps = 40/376 (10%)
Query: 4 VIGGGIIGVATAYELAKLGEEV--VVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYS 61
VIGGG+IG++ EL G +V +V +KR G+++ A G+ A F++ +++S
Sbjct: 5 VIGGGVIGLSIGVELLLAGHDVRLLVRDKR---EGASW-VAGGMLAPFSEGLRGDFLRFS 60
Query: 62 IER---WKELSEEL----GHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLIT 114
+E W + E L G + F Q G L +A E+E + ++++K ++ V LI+
Sbjct: 61 VESLRLWHDYLERLKEISGRKVFFSQ-GILRVAFDEKEEKKLREDVKFYSQ-EVCQNLIS 118
Query: 115 PEEAKEIVP--PLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWID 172
+A+E++ P E G ++G + A A EKLG + V +
Sbjct: 119 -YDAEELLKEFPYLSSEVRYGVIYGDEGNVDTEELMEALYVAFEKLGGEIINEDAVKILR 177
Query: 173 GGREHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTE-PLERG 231
G E K+ EF D V AT AW + G P+ P K Q+++ E PL+
Sbjct: 178 NG-ERIEKVFGFFEEFTADYYVFATGAW---LKEHFG---FPVFPVKGQILRVEAPLKDY 230
Query: 232 QIEPLVCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPA 291
+ + +Y+I +D ++ G E + D T + VK++ + A+ +P
Sbjct: 231 VVYS-------SRAYIIPREKD--LLIGATTE--NAGFDTKTTLEGVKKLSEGAISSVPQ 279
Query: 292 LRHVHVVRQWAGHYAKTPDNNPAIGELVEDFYVAIGFSGHGFMMAPAVAQALAERIVKGR 351
L+ ++ G TPD P + E+F V G +G ++APA A+ + I +G
Sbjct: 280 LKEAQLLEVRVGFRPGTPDELP-VFYFGENFSVYGGHYRNGILLAPATAEVALKLIDQG- 337
Query: 352 TKVPLDWEWYDPYRFE 367
+V ++ + PYRF+
Sbjct: 338 -EVSEYFKTFSPYRFK 352
>pir||C83407 hypothetical protein PA1918 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947911|gb|AAG05306.1|AE004617_10
(AE004617) hypothetical protein [Pseudomonas aeruginosa]
Length = 466
Score = 80.4 bits (195), Expect = 3e-14
Identities = 89/362 (24%), Positives = 155/362 (42%), Gaps = 46/362 (12%)
Query: 2 IGVIGGGIIGVATAYELAKLGEE--VVVFEKRYFGSGSTFRCAS---------GIRAQFT 50
+ ++GGG +G+ TA L +L + V++ E+ G G++ R G F
Sbjct: 36 VAIVGGGFVGLWTAITLKQLEPDARVLLLEQDVCGGGASGRNGGFVMSWWPKIGTLLGFC 95
Query: 51 DEANIKLMKYSIERW-KELSEELG-HNI--MFQQTGYLFLATTEEEVEAFKKNIKLQNRF 106
EA + + S ER +EL E H+I FQQ G+L+ ATT ++A+ + R
Sbjct: 96 SEAQARFLGESAERAIQELGEFCARHDIDAHFQQKGWLWTATTAHHLDAWNDTLAACERL 155
Query: 107 GVPT--KLITPEEAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYP 164
GV +L E A+ P++ LAG + + P + ++ LGV+ +
Sbjct: 156 GVSPFERLDASEVARRTGSPVH----LAGVFERSNATVQPALLVQGMRRVALALGVEIHE 211
Query: 165 YTEVVWIDGGREHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVK 224
V I G+ + + + + +V ATNAW + + + + IVP+ +
Sbjct: 212 RCGVSQIVPGQPAQ--LLSAGARVQAKAVVLATNAWSAAL-PRLSRLIVPVNS---SIAV 265
Query: 225 TEPLERGQIEPLVCPPAWNDSYVIQDGE----------DGGVICGTALEYKSDPDDVTPT 274
TE + + ++E + W I D + DG + G S +
Sbjct: 266 TEAIPQ-RLERI----GWTGGEAITDSQLMVDYYRTTRDGRIAFGKGTGALSYGSRIGRV 320
Query: 275 YDFVKEVLKWAV----KIIPALRHVHVVRQWAGHYAKTPDNNPAIGELVEDFYVAIGFSG 330
+D +E L + P+L + +V W+G +T D+ P G L E+ + IG+SG
Sbjct: 321 FDVDRESLALTEADFRRTYPSLGDIPLVDGWSGPIDRTYDSLPVFGRLHENIHYGIGWSG 380
Query: 331 HG 332
+G
Sbjct: 381 NG 382
>pir||G83298 conserved hypothetical protein PA2776 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948857|gb|AAG06164.1|AE004705_6 (AE004705)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 427
Score = 79.2 bits (192), Expect = 7e-14
Identities = 88/368 (23%), Positives = 150/368 (39%), Gaps = 42/368 (11%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANI---KLMKY 60
VIG G G++TA L + G +V V E G G++ R I ++ + ++ + K
Sbjct: 34 VIGAGYTGLSTALFLLENGFKVTVLEAAKVGFGASGRNGGQIVNSYSRDIDVIERTVGKR 93
Query: 61 SIERWKELSEELGHNIMFQQTGY----------LFLATTEEEVEAFKKNIKLQNRFGVPT 110
+ E++ E G I + Y +F A TE++++ + +L R+G
Sbjct: 94 EAQLLGEMAFEGGRIIRERVARYGIQCDLKDGGVFAAFTEKQMDHLRAQKQLWERYGHNQ 153
Query: 111 KLITPEEAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVW 170
I +AK I + + ++ G + G P + A E LG + Y +
Sbjct: 154 LEIM--DAKRIREVVATDNYIGGMLDMSGGHIHPLNLALGEAAAVESLGGRIYEQSPATR 211
Query: 171 IDGGREHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLER 230
I+ G + T +G+ + IV A NA+ +N ++ + P Q++ TEPL
Sbjct: 212 IERGASPV--VHTPQGKVKAKFIVVAGNAY---LNGLVPELAAKSMPCGTQVITTEPLNE 266
Query: 231 GQIEPLV----CPPAWN---DSYVIQDGE----DGGVICGTALEYKSDPDDVTPTYDFVK 279
L+ C N D Y + + GGVI G DP D+
Sbjct: 267 ELAHSLLPQDYCVEDCNYLLDYYRLSGDKRLIYGGGVIYGAR-----DPADIEAI----- 316
Query: 280 EVLKWAVKIIPALRHVHVVRQWAGHYAKTPDNNPAIGELVEDFYVAIGFSGHGFMMAPAV 339
+ +K P L+ V + W G++ T P +G + ++ Y + G SGHG
Sbjct: 317 -IRPKMLKTFPQLKDVKIDFAWTGNFLLTLSRLPQVGRIGDNIYYSQGCSGHGVTYTHVA 375
Query: 340 AQALAERI 347
+ LAE +
Sbjct: 376 GKVLAEAL 383
>gb|AAG20146.1| (AE005092) glycerol-3-phosphate dehydrogenase chain A; GpdA2
[Halobacterium sp. NRC-1]
Length = 570
Score = 79.2 bits (192), Expect = 7e-14
Identities = 88/321 (27%), Positives = 143/321 (44%), Gaps = 34/321 (10%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCA----SGIRAQFTDEANIKLMK 59
V+GGG G A +LA G V + E+ G+T R SG R +D+A+ + +
Sbjct: 9 VVGGGSTGAGVARDLAMRGLGVTLVEQGNLTHGTTGRMHGLLHSGGRYAVSDQASAR--E 66
Query: 60 YSIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAK 119
IE + L E H + +TG LF+ E+ + F++ + +PTK+++ EA+
Sbjct: 67 CIIEN-RVLREIATHCV--DETGGLFVKRPEDSEQYFQEKLAGCEACDIPTKVLSGAEAR 123
Query: 120 EIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPY---TEVVWIDGG-- 174
++ P L ++ W P D PF + A + ++ G + + T+VV DG
Sbjct: 124 QLEPHL-ADDVEKAIWVP-DAAIDPFRLVVANAASAQEHGARIETHSTVTDVVVEDGAVV 181
Query: 175 ---REHKW----KIKTTKGEFEV---DVIVNATNAWGSRINSMIGKDIVPITPFKHQLVK 224
EH ++ T+G EV D +VNA AW R+ M G D V + P K +
Sbjct: 182 GVEVEHATGAGKRVHGTEGGTEVIRADHVVNAAGAWAGRLGEMAGVD-VEVRPSKGVMT- 239
Query: 225 TEPLERGQIEPLV--CPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVL 282
+ Q++ +V C P + V+ + I GT E +DP+D V V+
Sbjct: 240 --VMNTRQVDTVVNRCRPKGDADIVVP--HETTCILGTTDEEVADPEDYPEQQWEVDMVI 295
Query: 283 KWAVKIIPALRHVHVVRQWAG 303
++IP L VR + G
Sbjct: 296 DELAELIPMLDDARTVRSFWG 316
>pir||S76505 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001620|dbj|BAA10351.1| (D64002) ThiG protein
[Synechocystis sp.]
Length = 656
Score = 78.8 bits (191), Expect = 1e-13
Identities = 90/354 (25%), Positives = 151/354 (42%), Gaps = 29/354 (8%)
Query: 4 VIGGGIIGVATAYELAKLGE---EVVVFEKRYFGSGSTFRCASGIRAQFTDEAN----IK 56
+IGGGIIG+A A EL KL + +V V + + + S A+G+ A ++ +
Sbjct: 9 IIGGGIIGLAIAVEL-KLKQKRLQVTVLSRDFAQAAS--HAAAGMLAPHAEQIAPGPMLD 65
Query: 57 LMKYSIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPE 116
L S R+ E E+L + +TGY EA N + + + E
Sbjct: 66 LCLASRWRYGEWVEKL-EQLTGMETGYNPCGILSPVFEAPHGNSSTNSAW------LDQE 118
Query: 117 EAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGRE 176
+ P L E+ + G W+P+DG+ + A ++A + LGV+ V I
Sbjct: 119 TIRYYQPGLG-EDVIGGWWHPDDGQVDNRKLVSALRQAAQSLGVQIQEGVTVQAIAQRHG 177
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTE-PLERGQIEP 235
+ T +G F+ D V A +W + + P+ P K Q++ P Q P
Sbjct: 178 QVTAVLTDQGSFQADSYVLANGSWAKELLPL------PVFPVKGQMMALRMPAGTHQPYP 231
Query: 236 LVCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHV 295
L +Y++ DG +I G E TP ++ +L A+++ PAL
Sbjct: 232 LQRVLFGPQTYLV-PRRDGRLIVGATSEQVDWQPHNTP--QGIQTLLGRAIRLFPALGDW 288
Query: 296 HVVRQWAGHYAKTPDNNPAIG-ELVEDFYVAIGFSGHGFMMAPAVAQALAERIV 348
+ W G TPD P +G ++ +AIG +G ++AP A +++ I+
Sbjct: 289 AIEDFWWGFRPGTPDEQPFLGYGPCDNLILAIGHYRNGILLAPITAALISDLIL 342
>gb|AAA96395.1| (U38892) N-terminal and C-terminal ends are similar to the proteins
ThiG and D-amino acid dehydrogenase small subunits from
Escherichia coli, respectively; Method: conceptual
translation supplied by author; ORF656 [Synechocystis
sp.]
Length = 656
Score = 78.8 bits (191), Expect = 1e-13
Identities = 90/354 (25%), Positives = 151/354 (42%), Gaps = 29/354 (8%)
Query: 4 VIGGGIIGVATAYELAKLGE---EVVVFEKRYFGSGSTFRCASGIRAQFTDEAN----IK 56
+IGGGIIG+A A EL KL + +V V + + + S A+G+ A ++ +
Sbjct: 9 IIGGGIIGLAIAVEL-KLKQKRLQVTVLSRDFAQAAS--HAAAGMLAPHAEQIAPGPMLD 65
Query: 57 LMKYSIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPE 116
L S R+ E E+L + +TGY EA N + + + E
Sbjct: 66 LCLASRWRYGEWVEKL-EQLTGMETGYNPCGILSPVFEAPHGNSSTNSAW------LDQE 118
Query: 117 EAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDGGRE 176
+ P L E+ + G W+P+DG+ + A ++A + LGV+ V I
Sbjct: 119 TIRYYQPGLG-EDVIGGWWHPDDGQVDNRKLVSALRQAAQSLGVQIQEGVTVQAIAQRHG 177
Query: 177 HKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTE-PLERGQIEP 235
+ T +G F+ D V A +W + + P+ P K Q++ P Q P
Sbjct: 178 QVTAVLTDQGSFQADSYVLANGSWAKELLPL------PVFPVKGQMMALRMPAGTHQPYP 231
Query: 236 LVCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHV 295
L +Y++ DG +I G E TP ++ +L A+++ PAL
Sbjct: 232 LQRVLFGPQTYLV-PRRDGRLIVGATSEQVDWQPHNTP--QGIQTLLGRAIRLFPALGDW 288
Query: 296 HVVRQWAGHYAKTPDNNPAIG-ELVEDFYVAIGFSGHGFMMAPAVAQALAERIV 348
+ W G TPD P +G ++ +AIG +G ++AP A +++ I+
Sbjct: 289 AIEDFWWGFRPGTPDEQPFLGYGPCDNLILAIGHYRNGILLAPITAALISDLIL 342
>sp|P44732|ORDL_HAEIN PROBABLE OXIDOREDUCTASE ORDL >gi|1073832|pir||F64072 probable
oxidoreductase (EC 1.-.-.-) HI0499 - Haemophilus
influenzae (strain Rd KW20) >gi|1573476|gb|AAC22156.1|
(U32731) oxidoreductase, putative [Haemophilus
influenzae Rd]
Length = 431
Score = 76.9 bits (186), Expect = 4e-13
Identities = 91/378 (24%), Positives = 159/378 (41%), Gaps = 58/378 (15%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRA-------------QFT 50
VIG G G++ A ELA+ G++V+V E G G++ R SG +A Q
Sbjct: 37 VIGAGFFGLSAALELAEKGKKVIVLEGARVGFGASGR--SGGQAINGFEEGIDEYIKQVG 94
Query: 51 DEANIKLMKYSIERWKELSEELG-HNIMFQ-QTGYLFLATTEEEVEAFKKNIKLQNR-FG 107
++ KL S+E + E + ++I + GY LA E ++ + K ++ FG
Sbjct: 95 EDKAHKLWNMSLETIDIIDERIEKYSIQCDWKKGYATLALNERRMDDLIEMEKESHKNFG 154
Query: 108 VPTKLITPEEAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFY---P 164
+ + ++ L + ++ G ++ G P + KA LGV+ + P
Sbjct: 155 YQNMQLW--DKTKLKQHLGSDIYVGGLFDSNSGHLHPLNYCLGLAKACVDLGVQIFEQSP 212
Query: 165 YTEVVWIDGGREHKWKIKTTKGEFEVDVIVNATNAW----GSRINSMIGKDIVPITPFKH 220
++V +G E +KT K ++ ATNA+ I+ I + I+P+ F
Sbjct: 213 VVDMVEKNGCVE----VKTAKSAVISQDVILATNAYIDVLPKSIHHGINRKILPVESF-- 266
Query: 221 QLVKTEPLERGQIEPLVCPPAWNDSYVIQDGEDGGVICGTAL---EYKSDPD-------D 270
++ TEPL + + ++ +G +C L Y+ D D
Sbjct: 267 -IIATEPLSQAVADSVI--------------NNGMSVCDNNLLLDYYRLSADNRLLFGSD 311
Query: 271 VTPTYDFVKEVLKWAVKIIPALRHVHVVRQWAGHYAKTPDNNPAIGELVEDFYVAIGFSG 330
+ D V + K + + P L +V + WAG T ++ P G + Y A G+SG
Sbjct: 312 SSSEKDMVAIMRKNMLCVFPQLENVKIDYGWAGPIDMTLNSTPHFGRISPHIYFAHGYSG 371
Query: 331 HGFMMAPAVAQALAERIV 348
HG + + +AE I+
Sbjct: 372 HGVALTGLAGRIVAEAIL 389
>sp|O32159|YURR_BACSU HYPOTHETICAL 39.4 KD OXIDOREDUCTASE IN HOM-MRGA INTERGENIC REGION
>gi|7475684|pir||A70019 opine catabolism homolog yurR -
Bacillus subtilis >gi|2635760|emb|CAB15253.1| (Z99120)
similar to opine catabolism [Bacillus subtilis]
Length = 372
Score = 76.1 bits (184), Expect = 6e-13
Identities = 94/379 (24%), Positives = 158/379 (40%), Gaps = 36/379 (9%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGI----RAQFTDEANIKLMK 59
++G GI+G +TAY LAK G V V +++ G + A+GI +Q ++ +L K
Sbjct: 6 IVGAGILGASTAYHLAKTGARVTVIDRKEPGQATD--AAAGIVCPWLSQRRNQDWYQLAK 63
Query: 60 YSIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNR----------FGVP 109
+K+L +L + TGY + +A K + K++ R G
Sbjct: 64 GGARYYKDLIHQLEKD-GESDTGYKRVGAISIHTDASKLD-KMEERAYKRREDAPEIGDI 121
Query: 110 TKLITPEEAKEIVPPL--NVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTE 167
T+L + E K++ P L E +G+A + A EK G
Sbjct: 122 TRL-SASETKKLFPILADGYESVHISGAARVNGRA----LCRSLLSAAEKRGATVIKGNA 176
Query: 168 VVWIDGGREHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEP 227
+ + G ++T +F D ++ AW + I +G ++ K Q++ E
Sbjct: 177 SLLFENGT--VTGVQTDTKQFAADAVIVTAGAWANEILKPLGIHF-QVSFQKAQIMHFEM 233
Query: 228 LERGQIE-PLVCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAV 286
+ P+V PP +D Y++ ++G ++ G E + DD+ T EVL A+
Sbjct: 234 TDADTGSWPVVMPP--SDQYIL-SFDNGRIVAGATHENDAGLDDLRVTAGGQHEVLSKAL 290
Query: 287 KIIPALRHVHVVRQWAGHYAKTPDNNPAIGEL--VEDFYVAIGFSGHGFMMAPAVAQALA 344
+ P L V G TP P +G + V+ Y A G G M P + LA
Sbjct: 291 AVAPGLADAAAVETRVGFRPFTPGFLPVVGAVPNVQGLYAANGLGASGLTMGPFLGAELA 350
Query: 345 ERIVKGRTKVPLDWEWYDP 363
+ ++ +T+ LD YDP
Sbjct: 351 KLVLGKQTE--LDLSPYDP 367
>pir||B75218 glycerol-3-phosphate dehydrogenase (glpa) PAB0183 - Pyrococcus
abyssi (strain Orsay) >gi|5457702|emb|CAB49193.1|
(AJ248283) glycerol-3-phosphate dehydrogenase (glpA)
[Pyrococcus abyssi]
Length = 497
Score = 75.3 bits (182), Expect = 1e-12
Identities = 95/378 (25%), Positives = 160/378 (42%), Gaps = 17/378 (4%)
Query: 2 IGVIGGGIIGVATAYELAKLGE-EVVVFEKRY-FGSGSTFRCASGIRAQFTDEANIKLMK 59
+ +IG GI G + A L+K EV + EK G G + + I + D+ M+
Sbjct: 7 VAIIGAGITGASIARVLSKYENLEVHLIEKNPDVGWGVSKANTAIIHGGYDDDPEKYPMR 66
Query: 60 YSI-----ERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPT-KLI 113
W E ++L I G L +A EE+ + +K ++ + GVP +++
Sbjct: 67 ARFCVKGNRIWHEWVKQL--EIPHVWNGALVVALEEEDFDELEKLLERGIKNGVPEMRIV 124
Query: 114 TPEEAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWIDG 173
EE ++ P LN L W P G+ +P + A + GVK + T+V I
Sbjct: 125 DKEELFQLEPGLN-RNALGALWVPIVGQIAPIPAVIALVENAVANGVKTHLETKVKGIKV 183
Query: 174 GREHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQL-VKTEPLERGQ 232
R ++T G E D+I+NA + I+ M+G D I P K + + E + +
Sbjct: 184 KRGEVRGLETNDGFIEADIIINAAGLYADEISRMVGLDYFEIRPRKGEYWIFDEGIPGPK 243
Query: 233 IEPLVCPPAWNDSYVIQDGEDGGVICGTALEYKS--DPDDVTPTYDFVKEVLKWAVKIIP 290
P + V+ G ++ G + S + ++ T + + EV + A K+ P
Sbjct: 244 RVLFPTPTPISKGIVVTTEISGHLMIGPNAKDLSPEEKENTATTREGLDEVWEGAKKLWP 303
Query: 291 AL-RHVHVVRQWAGHYAKTPDNNPAI--GELVEDFYVAIGFSGHGFMMAPAVAQALAERI 347
L V+R +AG + + I E V F G G APA+A +AE I
Sbjct: 304 NLPPRSKVIRTFAGLRPEPTGGDFIIRAEEEVWGFINVAGIRSPGLTSAPAIAYYVAELI 363
Query: 348 VKGRTKVPLDWEWYDPYR 365
+ ++ + ++PYR
Sbjct: 364 ERELDVKLIEKKNWNPYR 381
>sp|P37906|ORDL_ECOLI PROBABLE OXIDOREDUCTASE ORDL >gi|7449558|pir||H64878 probable
oxidoreductase (EC 1.-.-.-) ordL - Escherichia coli
>gi|1054921|gb|AAC45300.1| (U38543) oxidoreductase
[Escherichia coli] >gi|1742131|dbj|BAA14870.1| (D90768)
Probable oxidoreductase OrdL (EC 1.-.-.-). [Escherichia
coli] >gi|1787559|gb|AAC74383.1| (AE000228) probable
oxidoreductase [Escherichia coli K12]
Length = 426
Score = 74.1 bits (179), Expect = 2e-12
Identities = 79/367 (21%), Positives = 150/367 (40%), Gaps = 43/367 (11%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANIKLMKYSIE 63
V+GGG G+++A LA+ G +VVV E G G++ R + ++ + ++ Y ++
Sbjct: 32 VVGGGYTGLSSALHLAEAGFDVVVLEASRIGFGASGRNGGQLVNSYSRDIDVIEKSYGMD 91
Query: 64 RWKELSEEL--GHNIMFQQT-----------GYLFLATTEEEVEAFKKNIKLQNRFGVPT 110
+ L + G I+ ++ G LF+A ++++ ++ + R+G
Sbjct: 92 TARMLGSMMFEGGEIIRERIKRYQIDCDYRPGGLFVAMNDKQLATLEEQKENWERYG--N 149
Query: 111 KLITPEEAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVW 170
K + +A I + + + + G P + A G + Y + V
Sbjct: 150 KQLELLDANAIRREVASDRYTGALLDHSGGHIHPLNLAIGEADAIRLNGGRVYELSAVTQ 209
Query: 171 IDGGREHKWKIKTTKGEFEVDVIVNATNAW-GSRINSMIGKDIVPITPFKHQLVKTEPLE 229
I ++T KG+ ++ A NA+ G ++ + K +P Q++ TE L
Sbjct: 210 IQ--HTTPAVVRTAKGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGT---QVITTERLS 264
Query: 230 RGQIEPLVCPPAWNDSYVIQDGE----------DGGVICGTALEYKS-DPDDVTPTYDFV 278
L+ +Y ++D D ++ G + Y + DPDDV
Sbjct: 265 EDLARSLI-----PKNYCVEDCNYLLDYYRLTADNRLLYGGGVVYGARDPDDVE------ 313
Query: 279 KEVLKWAVKIIPALRHVHVVRQWAGHYAKTPDNNPAIGELVEDFYVAIGFSGHGFMMAPA 338
+ V+ +K P L+ V + +W G++ T P G L + Y G+SGHG
Sbjct: 314 RLVVPKLLKTFPQLKGVKIDYRWTGNFLLTLSRMPQFGRLDTNIYYMQGYSGHGVTCTHL 373
Query: 339 VAQALAE 345
+ +AE
Sbjct: 374 AGRLIAE 380
>dbj|BAB09014.1| (AB007645) contains similarity to unknown
protein~gene_id:K8K14.1~sp|Q10058 [Arabidopsis thaliana]
Length = 406
Score = 73.4 bits (177), Expect = 4e-12
Identities = 99/386 (25%), Positives = 151/386 (38%), Gaps = 46/386 (11%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTDEANI-KLMKYSI 62
V GGG+IGV TAY LAK G V + EK ++ + + + D + + L + S
Sbjct: 44 VCGGGVIGVCTAYFLAKKGIAVTLVEKSAVACAASGKAGGFLAFDWCDGSPVAHLARASF 103
Query: 63 ERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTK----LITPEEA 118
+ + L+EEL + L+ T E + + L + P K + T +
Sbjct: 104 KLHRSLAEELNGVESYGYRALTTLSVTVTESKPGSGGLGLPDWVNGPAKSTSTIGTTQTT 163
Query: 119 KEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVK-FYPYTEVVWIDGGREH 177
++ P L + L+ A EK GV+ E V ++ GR +
Sbjct: 164 AQVHPQLFTRKLLS--------------------TAREKYGVEVVIGKLEEVRVESGRVN 203
Query: 178 KWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERGQIEP-- 235
++ + + DV+V A W S+ + I + K + EP E I P
Sbjct: 204 SVVLEGGR-VIDTDVVVLAMGPWSSKFELL--SSIFRVYCTKAHSIVLEPKEPNAITPHA 260
Query: 236 --LVCPPAWN----DSYVIQDGEDGGVICGTAL--EYKSDPDDVTPTYDFVKEVLKWAVK 287
L PA D V ICG + E D D VT + + +VLK K
Sbjct: 261 LFLTYRPAHGGEALDPEVYPRPTGEVYICGMSSQEEVPDDADQVTSNPESI-QVLKRVAK 319
Query: 288 IIPAL---RHVHVVRQWAGHYAKTPDNNPAIGEL--VEDFYVAIGFSGHGFMMAPAVAQA 342
+ + + V + A T D P IGE+ ++ YV G S G + PA A
Sbjct: 320 TVSSYLNEENALVKAEQACFLPSTEDGVPVIGEIPGIKGCYVGTGHSCWGILNGPATGAA 379
Query: 343 LAERIVKGRTKVPLDWEWYDPYRFER 368
LAE IV G +D + P RF +
Sbjct: 380 LAELIVDG-VATSVDLSRFSPSRFSK 404
>emb|CAC11772.1| (AL445064) glycerol-3-phosphate dehydrogenase related protein
[Thermoplasma acidophilum]
Length = 422
Score = 71.4 bits (172), Expect = 2e-11
Identities = 96/370 (25%), Positives = 153/370 (40%), Gaps = 40/370 (10%)
Query: 2 IGVIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFR----CASGIRAQFTDEANIKL 57
I VIG GI G+ AY LA G +V VFE+ SG++ R SG R DE + +
Sbjct: 8 IAVIGAGINGIFAAYYLAYAGYDVTVFERGDIDSGTSGRFHGMLHSGARYATNDEVSARE 67
Query: 58 MKYSIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEE 117
R +GH + + TG FLA ++E E R G+ I EE
Sbjct: 68 CIVENRR----ISNIGHRYV-ENTGGYFLAANDDEAEFGDVLFDACRRAGIDISEIPIEE 122
Query: 118 AKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWID----- 172
P L + A D + + + A +G K Y++V ID
Sbjct: 123 FARDNPQL---KNARRAMRVPDKVIRSYEFVVSVAAAAHLMGTKIRTYSDVKKIDIEGNS 179
Query: 173 -GGREHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLERG 231
G E++ K +F D +VNAT + +I G P+ P +V E
Sbjct: 180 VTGIEYERSGKEISEKF--DAVVNATGPFSGKILERSGLKQTPVMPSAGIMVVLEGRVST 237
Query: 232 QI-----EPL---VCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLK 283
I EP + P W++S + V+ ++ +P+D+ D + E++
Sbjct: 238 AILNRMREPSDADILLPYWSNSIL----GTSAVVVEDPDSFRPEPEDMQMMIDDMSELVP 293
Query: 284 WAVKIIPALRHVHVVR---QWAGHYAKTPDNNPAI--GELVEDFYVAIGFSGHGFMMAPA 338
AVKI+P R+ + VR + AG A+T + I E ++D +++ G F
Sbjct: 294 -AVKIMPIKRYYYSVRPLIEDAGEDARTASRSFRIVGEEDLDDTLLSV--VGGKFTTGRL 350
Query: 339 VAQALAERIV 348
V + +A+R++
Sbjct: 351 VGEEIAKRVM 360
>pir||G81179 oxidoreductase, probable NMB0614 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225844|gb|AAF41041.1| (AE002416) oxidoreductase,
putative [Neisseria meningitidis MC58]
Length = 431
Score = 71.0 bits (171), Expect = 2e-11
Identities = 82/366 (22%), Positives = 151/366 (40%), Gaps = 33/366 (9%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSG----------STFRCASG-IRAQFTDE 52
+IGGG+ G+ TA LA+ G E VV E G G S + C G I Q E
Sbjct: 37 IIGGGLGGLCTALPLAEQGHETVVLEAARIGFGASGRSGGQVISDYACGMGEIEKQVGLE 96
Query: 53 ANIKLMKYSIERWKELSEELGHNIMF--QQTGYLFLATTEEEVEAFKK-NIKLQNRFGVP 109
+ S++ + + E + + + Q GY +A + E ++ + Q +G
Sbjct: 97 QAQWFWQQSLQAVELVDERVRKHAVDCDWQRGYATVAVRPQHWEELQQWHEHAQRHYGAS 156
Query: 110 TKLITPEEAKEIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVV 169
+ + E+ L+ + + ++P G P +A + G + + + +
Sbjct: 157 HYQLW--DKAELKQQLDSDMYQGAQFDPLSGHLHPLTYTLGIARAAAEAGAQIFEQSPMT 214
Query: 170 WIDGGREHKWKIKTTKGEFEVDVIVNATNAWG--SRINSMIGKDIVPITPFKHQLVKTEP 227
I+ ++ W + T +G E +V A N + + I + + + ++ F ++ TEP
Sbjct: 215 CIEP-HQNGWLVYTPEGSVECKNVVYAVNTYAGLNPIFRPLERKAIAVSTF---IIATEP 270
Query: 228 L---ERGQIEP--LVCPPAWNDSYVIQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVL 282
L +G I VC Y + + G E+ +P+ +T + V++ +
Sbjct: 271 LGARAKGLIRNNMAVCDNRHILDYYRLSADGRLLFGGKDNEFIDNPERMT---ELVRQDM 327
Query: 283 KWAVKIIPALRHVHVVRQWAGHYAKTPDNNPAIGELVEDFYVAIGFSGHGFMMAPAVAQA 342
+K+ P L V + W G T + P G L + + A G+SGHG + A
Sbjct: 328 ---LKVFPQLADVKIEYSWGGECDITANLVPHFGRLAPNVFYAQGYSGHGMAITGIAGLA 384
Query: 343 LAERIV 348
+AE I+
Sbjct: 385 VAEAIL 390
>pir||B83078 probable D-amino acid oxidase PA4548 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950792|gb|AAG07936.1|AE004868_7 (AE004868) probable
D-amino acid oxidase [Pseudomonas aeruginosa]
Length = 364
Score = 71.0 bits (171), Expect = 2e-11
Identities = 86/375 (22%), Positives = 161/375 (42%), Gaps = 53/375 (14%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFT---DEANIKLMKY 60
V+G G+IG+ TA ELA G V + E+ G +++ + + A L +
Sbjct: 7 VVGAGVIGLLTARELALAGLRVTLVERGESGREASWAGGGIVSPLYPWRYSPAVTALAHW 66
Query: 61 SIERWKELSEELGHNIMFQQTGY--------LFLATTEEEVEAFKKNIKLQNRFGVPTKL 112
S + + L + L +TG L+ +++ EA ++ + P K
Sbjct: 67 SQDFYPALGQRL-----LDETGLDPEVHTVGLYWLDLDDQTEA----LQWARKHTRPLKE 117
Query: 113 ITPEEAKEIVPPLNV----EEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEV 168
+ EEA VP L +++G N + + + +L A + L + + TEV
Sbjct: 118 VPIEEAYAAVPGLGAGFQRAVYMSGVANVRNPRLA--RSLRASLQQFANL--ELHEQTEV 173
Query: 169 V-WIDGGREHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEP 227
W+ G + + T++GE D ++ A AW + +G ++ P+ P K Q++ +
Sbjct: 174 RGWLRDG-DRVVGVATSRGEIRGDKVLLAAGAWSGELLKPLGLEL-PVVPVKGQMILYK- 230
Query: 228 LERGQIEPLVCPPAWNDSYVIQDGE------DGGVICGTALEYKSDPDDVTPTYDFVKEV 281
C + V+ G DG ++ G+ LE+ D TPT + + +
Sbjct: 231 ----------CAADFLPRMVLAKGRYAIPRRDGHILIGSTLEHSGF--DKTPTDEAQESL 278
Query: 282 LKWAVKIIPALRHVHVVRQWAGHYAKTPDNNPAIGEL--VEDFYVAIGFSGHGFMMAPAV 339
A +++P L + V WAG +P+ P IG + + ++ G +G ++APA
Sbjct: 279 RASAAELLPELADMQPVAHWAGLRPGSPEGIPYIGPVPGFDGLWLNTGHYRNGLVLAPAS 338
Query: 340 AQALAERIVKGRTKV 354
+ LA+ ++ GR +
Sbjct: 339 CRLLAD-LMSGREPI 352
>pir||T35488 probable oxidoreductase - Streptomyces coelicolor (fragment)
>gi|5689917|emb|CAB51955.1| (AL109661) putative
oxidoreductase [Streptomyces coelicolor A3(2)]
Length = 375
Score = 70.2 bits (169), Expect = 4e-11
Identities = 81/355 (22%), Positives = 147/355 (40%), Gaps = 18/355 (5%)
Query: 9 IIGVATAYELAKLGEEVVVFEKRYFGSGSTFRCASGIRAQFTD-----EANIKLMKYSIE 63
IIG+ TA+ A+ G + + G + A+G+ A T+ E + L S
Sbjct: 1 IIGLVTAWRAARRGLVTALVDPE--PGGGAAQVAAGMLAAVTELHYGEETLLALNLASAR 58
Query: 64 RWKELSEEL----GHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAK 119
R+ E + EL GH++ +++ G L +A ++ ++ LQ R G+ ++ ++ E +
Sbjct: 59 RYPEFAAELTELTGHDLGYRRCGTLAVALDADDRAHLRELHALQQRSGLESEWLSGRECR 118
Query: 120 EIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYP-YTEVVWIDGGREHK 178
+ P L G D + P A A E GV F+ + E + + G
Sbjct: 119 RLEPML-APGVRGGLRVDGDHQIDPRRLARALVAACEHAGVVFHRVWAERLTVGRGDRAT 177
Query: 179 WKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVK-TEPLERGQIEPLV 237
+ E +V A + R+ + + P+ P K Q+++ T P G +
Sbjct: 178 GVVGADGTALEAGQVVLAGGSLSGRLGGVPEAVLPPVRPVKGQVLRLTMPRTPGPLLNRT 237
Query: 238 CPPAWNDSYV-IQDGEDGGVICGTALEYKSDPDDVTPTYDFVKEVLKWAVKIIPALRHVH 296
++V + E G ++ G E D T T V E+L+ A +++P + +
Sbjct: 238 VRAVVRGNHVYLVPRESGELVVGATSEELGW--DTTVTAGGVYELLRDAHELVPGITELP 295
Query: 297 VVRQWAGHYAKTPDNNPAIGELVED-FYVAIGFSGHGFMMAPAVAQALAERIVKG 350
+ AG +PDN P +G D +A G +G ++ P +AE + G
Sbjct: 296 LTETRAGLRPGSPDNAPLLGPTALDGLLLATGHYRNGVLLTPVTGDVMAEALTGG 350
>sp|P43799|GLPA_HAEIN ANAEROBIC GLYCEROL-3-PHOSPHATE DEHYDROGENASE SUBUNIT A (G-3-P
DEHYDROGENASE) >gi|1074156|pir||E64086
glycerol-3-phosphate dehydrogenase (EC 1.1.99.5) chain
A, anaerobic - Haemophilus influenzae (strain Rd KW20)
>gi|1573687|gb|AAC22345.1| (U32751) anaerobic
glycerol-3-phosphate dehydrogenase, subunit A (glpA)
[Haemophilus influenzae Rd]
Length = 563
Score = 69.5 bits (167), Expect = 6e-11
Identities = 79/314 (25%), Positives = 134/314 (42%), Gaps = 27/314 (8%)
Query: 4 VIGGGIIGVATAYELAKLGEEVVVFEKRYFGSGSTFR----CASGIRAQFTDEANIKLMK 59
+IGGG G A + A G + ++ E+R +G+T R SG R D+ + +
Sbjct: 23 IIGGGATGAGIARDCALRGIDCILLERRDIATGATGRNHGLLHSGARYAVNDQES---AE 79
Query: 60 YSIERWKELSEELGHNIMFQQTGYLFLATTEEEVEAFKKNIKLQNRFGVPTKLITPEEAK 119
I+ + L + H + +T LF+ E+ ++ K ++ + G+ + I PE AK
Sbjct: 80 ECIKENRILRKIARHCV--DETEGLFITLPEDSLDYQKTFLESCAKSGIDAQAIDPELAK 137
Query: 120 EIVPPLNVEEFLAGAWNPEDGKASPFHTLYAYKKAGEKLGVKFYPYTEVVWI--DGGR-- 175
+ P +N + L GA DG PF + + G K + Y EV + +GG+
Sbjct: 138 IMEPSVNPD--LVGAVVVPDGSIDPFRLTASNMMDATENGAKMFTYCEVKNLIREGGKVI 195
Query: 176 -----EHKWKIKTTKGEFEVDVIVNATNAWGSRINSMIGKDIVPITPFKHQLVKTEPLER 230
+HK + +F ++VNA WG I I LV + +
Sbjct: 196 GVNAYDHK---NRRERQFFAPLVVNAGGIWGQGIAEYADLKIKMFPAKGALLVMGHRINK 252
Query: 231 GQIEPLVCPPAWNDSYVIQDGEDGGVICGTALEYKSDP-DDVTPTYDFVKEVLKWAVKII 289
I P D+ ++ G+ VI T+ D D++ T + V + + K+
Sbjct: 253 LVINRCRKPA---DADILVPGDTICVIGTTSSRIPYDQIDNMEVTPEEVDILFREGEKLA 309
Query: 290 PALRHVHVVRQWAG 303
P+LRH V+R +AG
Sbjct: 310 PSLRHTRVLRAYAG 323
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157706506
Number of Sequences: 2977
Number of extensions: 7134743
Number of successful extensions: 16181
Number of sequences better than 1.0e-10: 51
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 16044
Number of HSP's gapped (non-prelim): 57
length of query: 379
length of database: 189,106,746
effective HSP length: 53
effective length of query: 326
effective length of database: 157,386,935
effective search space: 51308140810
effective search space used: 51308140810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)