BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0223 (PAB0223) DE:Hypothetical protein
(269 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75148 hypothetical protein PAB0223 - Pyrococcus abyssi (st... 535 e-151
pir||G71188 hypothetical protein PH1783 - Pyrococcus horikoshii ... 493 e-138
pir||E69026 conserved hypothetical protein MTH1196 - Methanobact... 156 3e-37
sp|Q58185|Y775_METJA HYPOTHETICAL PROTEIN MJ0775 >gi|2128495|pir... 145 4e-34
pir||D72425 conserved hypothetical protein - Thermotoga maritima... 128 8e-29
gi|11498779 conserved hypothetical protein [Archaeoglobus fulgid... 119 4e-26
gb|AAG20094.1| (AE005089) Vng1901c [Halobacterium sp. NRC-1] 113 2e-24
pir||H72457 hypothetical protein APE2308 - Aeropyrum pernix (str... 105 6e-22
pir||C81949 hypothetical protein NMA1013 [imported] - Neisseria ... 98 1e-19
pir||B81155 conserved hypothetical protein NMB0803 [imported] - ... 97 2e-19
emb|CAC12264.1| (AL445066) conserved hypothetical protein [Therm... 93 3e-18
dbj|BAB04717.1| (AP001510) unknown conserved protein [Bacillus h... 90 2e-17
pir||H69759 conserved hypothetical protein yciA - Bacillus subti... 80 4e-14
>pir||G75148 hypothetical protein PAB0223 - Pyrococcus abyssi (strain Orsay)
>gi|5457780|emb|CAB49270.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 269
Score = 535 bits (1364), Expect = e-151
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MRELYVETQEEEPEIKIPLPRVGITNLRTIAKINWKGRIYTFIPTFEVTIDLPREKKGIH 60
MRELYVETQEEEPEIKIPLPRVGITNLRTIAKINWKGRIYTFIPTFEVTIDLPREKKGIH
Sbjct: 1 MRELYVETQEEEPEIKIPLPRVGITNLRTIAKINWKGRIYTFIPTFEVTIDLPREKKGIH 60
Query: 61 MSRLVESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEEKHKHKRAEVWIRTTLILEKT 120
MSRLVESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEEKHKHKRAEVWIRTTLILEKT
Sbjct: 61 MSRLVESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEEKHKHKRAEVWIRTTLILEKT 120
Query: 121 TPASRKLSYEPYDVEVAVIKEGKDVKKRLKVRVIGNTACPHAMANNNGKTHIQRAIGELE 180
TPASRKLSYEPYDVEVAVIKEGKDVKKRLKVRVIGNTACPHAMANNNGKTHIQRAIGELE
Sbjct: 121 TPASRKLSYEPYDVEVAVIKEGKDVKKRLKVRVIGNTACPHAMANNNGKTHIQRAIGELE 180
Query: 181 VMADFNEEIALEDMIEVVESSFSSPTYTLLKTPDENAVVRKMYENPKFVEDVAREILMKA 240
VMADFNEEIALEDMIEVVESSFSSPTYTLLKTPDENAVVRKMYENPKFVEDVAREILMKA
Sbjct: 181 VMADFNEEIALEDMIEVVESSFSSPTYTLLKTPDENAVVRKMYENPKFVEDVAREILMKA 240
Query: 241 REKFPGRIHVRVISNESIHKHDVIAEAWA 269
REKFPGRIHVRVISNESIHKHDVIAEAWA
Sbjct: 241 REKFPGRIHVRVISNESIHKHDVIAEAWA 269
>pir||G71188 hypothetical protein PH1783 - Pyrococcus horikoshii
>gi|3258219|dbj|BAA30902.1| (AP000007) 269aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 269
Score = 493 bits (1255), Expect = e-138
Identities = 239/269 (88%), Positives = 258/269 (95%)
Query: 1 MRELYVETQEEEPEIKIPLPRVGITNLRTIAKINWKGRIYTFIPTFEVTIDLPREKKGIH 60
MREL++ETQE+EPEIKIPLPRVGITNLRTIAKINWKGR+YTFIPTFE+TIDLPREKKGIH
Sbjct: 1 MRELFIETQEKEPEIKIPLPRVGITNLRTIAKINWKGRVYTFIPTFEITIDLPREKKGIH 60
Query: 61 MSRLVESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEEKHKHKRAEVWIRTTLILEKT 120
MSRLVESITDAMSEA+EEEVKKIHTSLEELALAVI+RLEEKH+HKRAEVWIRTTLILEK
Sbjct: 61 MSRLVESITDAMSEAIEEEVKKIHTSLEELALAVIQRLEEKHRHKRAEVWIRTTLILEKM 120
Query: 121 TPASRKLSYEPYDVEVAVIKEGKDVKKRLKVRVIGNTACPHAMANNNGKTHIQRAIGELE 180
TPAS KLSYEPYDVEV VIKEG +KK LKV+VIGNTACPHAMANN GKTHIQRAIGELE
Sbjct: 121 TPASNKLSYEPYDVEVGVIKEGDKIKKTLKVKVIGNTACPHAMANNEGKTHIQRAIGELE 180
Query: 181 VMADFNEEIALEDMIEVVESSFSSPTYTLLKTPDENAVVRKMYENPKFVEDVAREILMKA 240
V DFNE + LEDMIEVVESSFSSPTYTLLKTPDEN+VVR+MYENPKFVEDVAREIL+KA
Sbjct: 181 VTTDFNEYVTLEDMIEVVESSFSSPTYTLLKTPDENSVVRRMYENPKFVEDVAREILIKA 240
Query: 241 REKFPGRIHVRVISNESIHKHDVIAEAWA 269
++KFPG+IHV+V+SNESIHKHDVIAEAWA
Sbjct: 241 KKKFPGKIHVKVVSNESIHKHDVIAEAWA 269
>pir||E69026 conserved hypothetical protein MTH1196 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622305|gb|AAB85685.1| (AE000888) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 318
Score = 156 bits (390), Expect = 3e-37
Identities = 97/297 (32%), Positives = 155/297 (51%), Gaps = 39/297 (13%)
Query: 5 YVETQEEEPEIKIPLPRVGITNLRTIAKINWKGRI-YTFIPTFEVTIDLPREKKGIHMSR 63
+ +TQ++ P I + L RVG+T ++ + KI +GR +PTF+ +DLP +++GIHMSR
Sbjct: 6 FPDTQDKIPSIPVHLTRVGVTGVKKLLKIEREGRRPIILLPTFDAFVDLPSKQRGIHMSR 65
Query: 64 LVESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEEKHKH-KRAEVWIRTTLILEKTTP 122
E+I+D + E VE LE L ++ L +KH++ +RAEV + + + K +P
Sbjct: 66 NPEAISDVLEEVVENNA----LELESLCAEIVNELLKKHRYARRAEVSMNSDFMFMKRSP 121
Query: 123 ASRKLSYEPYDVEVAVI----KEGKDVKKRLKVRVIGNTACPHAMAN------------- 165
+R+ S E + I +G ++K + V+G T CP A +
Sbjct: 122 VTRRKSQEMTKIMADAIGYRDDDGIVIRKMIGAEVVGMTVCPCAQESVREASRQKLLEFL 181
Query: 166 -----------NNGKTHIQRAIGELEVMADFNEEIALEDMIEVVESSFSSPTYTLLKTPD 214
+ +H Q G + + ++ I E +I+++ESS SSP Y LLK PD
Sbjct: 182 DDETVERVLDCVSFASHNQSGRGMIMIEVPEDQTIRAEKLIDIIESSMSSPVYELLKRPD 241
Query: 215 ENAVVRKMYENPKFVEDVAREILMKAREKFPGR-----IHVRVISNESIHKHDVIAE 266
ENAVV +ENP FVED R ++ + ++P + VR I+ ESIH+H+ AE
Sbjct: 242 ENAVVMSAHENPMFVEDCVRNMVHRIVSEYPHLPDDTIVTVRQINEESIHRHNAFAE 298
>sp|Q58185|Y775_METJA HYPOTHETICAL PROTEIN MJ0775 >gi|2128495|pir||G64396 hypothetical
protein MJ0775 - Methanococcus jannaschii
>gi|1592307|gb|AAB98765.1| (U67522) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 316
Score = 145 bits (363), Expect = 4e-34
Identities = 101/296 (34%), Positives = 158/296 (53%), Gaps = 40/296 (13%)
Query: 7 ETQEEEPEIKIPLPRVGITNLRTIAKINWKG-RIYTFIPTFEVTIDLPREKKGIHMSRLV 65
+ Q EP++KI L RVG+TNL+ + ++ R + TFEV ++LP +KGIHMSR
Sbjct: 9 DVQNFEPDVKISLTRVGVTNLKKLVRLKRTNKRPIILLSTFEVFVNLPSSQKGIHMSRNP 68
Query: 66 ESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEEKHKH-KRAEVWIRTTLILEKTTPAS 124
E I + EA+E E ++ T EE ++KRL EKH++ AEV++ + + ++ +P S
Sbjct: 69 EVIEGIIDEALELESYEMETICEE----IVKRLFEKHEYATEAEVFMVSDFMTKEKSPIS 124
Query: 125 RKLSYEPYDVEVAV--IKEGKDVK--KRLKVRVIGNTACPHA--------MANNNGK--- 169
K S E + + IK+ +++ K + V+G TACP A + N K
Sbjct: 125 GKYSQEIHKIMGGAKGIKKDDEIELTKIVGAEVVGITACPCAQNLIKEICIKNLKEKGFS 184
Query: 170 --------------THIQRAIGELEVMADFNEEIALEDMIEVVESSFSSPTYTLLKTPDE 215
TH QR IG + + +I + D+IE+++ S S+ + +LK DE
Sbjct: 185 DEDIDKILDSVIFATHNQRGIGRIILEVPTGYDIEIMDIIEIIKKSMSAEIHGILKRADE 244
Query: 216 NAVVRKMYENPKFVEDVAREILMKAREKF-----PGRIHVRVISNESIHKHDVIAE 266
VV + ++NPKFVED RE+ + EKF ++ +R I+ ESIH+HD AE
Sbjct: 245 AYVVEQSHKNPKFVEDCVREMAKRVVEKFKHLPDETKVLIRQINMESIHRHDAFAE 300
>pir||D72425 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980524|gb|AAD35133.1|AE001691_7 (AE001691)
conserved hypothetical protein [Thermotoga maritima]
Length = 259
Score = 128 bits (318), Expect = 8e-29
Identities = 95/263 (36%), Positives = 136/263 (51%), Gaps = 21/263 (7%)
Query: 7 ETQEEEPEIKIPLPRVGITNLRTIAKINWKGRIY-TFIPTFEVTIDLPREKKGIHMSRLV 65
+ Q E+ +PL +VGI +L K+ K Y + + ++DL REK+GIHMSR +
Sbjct: 3 DVQNEKDPRMVPLKKVGIKDLHWPLKVILKEDGYQSTVAQISCSVDLHREKRGIHMSRFI 62
Query: 66 ESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEEKHKHKRAEVWIRTTLILEKTTPASR 125
E + K+ ++ ++ L E + KRA + I + K +P SR
Sbjct: 63 EVLN------------KLEVITPQIFEEILDDLIEIMEAKRAHLEIHFPYFIWKESPVSR 110
Query: 126 KLSYEPYDVEVAVIKEGKDVKKRLKVRVIGNTACPHAMANNNGKTHIQRAIGELEVMADF 185
K S D V KE K+ ++ VR +T CP + ++ H QRA E+ V
Sbjct: 111 KKSPLKVDCFVEAEKE-KNFSFKIGVRTPVHTLCPCSKEISDYGAHNQRAFVEITVKT-- 167
Query: 186 NEEIALEDMIEVVESSFSSPTYTLLKTPDENAVVRKMYENPKFVEDVAREILMKAREKFP 245
+ I ED++E+ E + SSP YTLLK PDE V K YENP+FVEDVAR++ ++ EK P
Sbjct: 168 RKFIWFEDLVEIAEKNASSPLYTLLKRPDEKFVTEKAYENPRFVEDVARDVALEL-EKDP 226
Query: 246 GRI---HVRVISNESIHKHDVIA 265
RI V V S ESIH H+ A
Sbjct: 227 -RITWYRVYVESMESIHNHNAFA 248
>gi|11498779 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451312|pir||B69397 conserved hypothetical protein
AF1179 - Archaeoglobus fulgidus
>gi|2649401|gb|AAB90061.1| (AE001022) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 315
Score = 119 bits (295), Expect = 4e-26
Identities = 91/296 (30%), Positives = 146/296 (48%), Gaps = 37/296 (12%)
Query: 7 ETQEEEPEIKIPLPRVGITNLRTIAKINWKG-RIYTFIPTFEVTIDLPREKKGIHMSRLV 65
+ Q +PE+ I L RVG T ++ + ++ +G R I TF+V +DLP KG+++SR
Sbjct: 4 DVQLLKPEVPIGLSRVGATGIKKLVEVQREGKRPIILISTFDVFVDLPAHLKGVNLSRNF 63
Query: 66 ESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEEKHKHKRAEVWIRTTLILEKTTPASR 125
E I + + + ++ I + E+A ++KR E K AE + + LI+ K TP +
Sbjct: 64 EVIDEVLETLTAKPIENIEDLVVEIADHLLKRHEYATK---AEARMNSELIMRKRTPKTG 120
Query: 126 KLSYEPYDV--EVAVIKEGKDVKKRLKVRVIGNTACPHAM-------ANNNGK------- 169
+ + E + E + ++G V + V V G TACP A A K
Sbjct: 121 QRTQEVVKIFGEATLGRDGSKV-IMVGVEVTGITACPCAQELVKASSAERLAKMGFDEET 179
Query: 170 -----------THIQRAIGELEVMADFNEEIALEDMIEVVESSFSSPTYTLLKTPDENAV 218
TH QR L+V + ++ + +I+V +SS S TY +LK DE AV
Sbjct: 180 IQKILDAIPVATHNQRGRATLKVQVTDSFKVPIAKLIDVAKSSMSYETYEILKREDELAV 239
Query: 219 VRKMYENPKFVEDVAREILMKAREKFPGR-----IHVRVISNESIHKHDVIAEAWA 269
V + N +FVED R + M+ + FP + +R + ESIH+H+V+AE +A
Sbjct: 240 VEAAHRNTRFVEDGVRYMAMELLKTFPNAPDDILVFLRQENEESIHQHNVVAERFA 295
>gb|AAG20094.1| (AE005089) Vng1901c [Halobacterium sp. NRC-1]
Length = 311
Score = 113 bits (280), Expect = 2e-24
Identities = 85/299 (28%), Positives = 139/299 (46%), Gaps = 37/299 (12%)
Query: 1 MRELYVETQEEEPEIKIPLPRVGITNLRTIAKINWKG-RIYTFIPTFEVTIDLPREKKGI 59
M + + Q EP++ + L VG+T + + +I + R + FEV +DLPR +KGI
Sbjct: 1 MSQQLPDVQATEPDVSVGLSEVGVTGVEKLVEIAREDDRPIVLMAEFEVYVDLPRGRKGI 60
Query: 60 HMSRLVESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEEKHKHKR-AEVWIRTTLILE 118
MSR + I + + +AV E + ++ EE+ V +RL EKH + A V + L+L
Sbjct: 61 DMSRNMRVIDETLEDAVREPIYRV----EEMCGEVAERLLEKHDYTTTATVEMNAELMLR 116
Query: 119 KTTPASRKLSYEPYDVEV-AVIKEGKDVKKRLKVRVIGNTACP--HAMANNNGKT----- 170
+ TPAS + D+ A +E ++ + RV+G T CP M + +
Sbjct: 117 EETPASDLPTQGTIDIIASATAQEDAPTREEIGARVVGMTVCPCSQQMMSETARRKLAEL 176
Query: 171 ------------------HIQRAIGELEVMADFNEEIALEDMIEVVESSFSSPTYTLLKT 212
H QR L V A + ++ L D++ V S S+ Y K
Sbjct: 177 GVGEDAVREFLRDVPQAGHSQRGHATLTVEAGGDPDVNLMDLVSVARDSMSARIYNTAKR 236
Query: 213 PDENAVVRKMYENPKFVEDVAREILMKAREKF-----PGRIHVRVISNESIHKHDVIAE 266
PDE+ + + + N KFVED R + E+F + ++ ++ESIH+H+ AE
Sbjct: 237 PDEDHMTYESHANAKFVEDCVRSMARGVVEEFDHLPEDAVVTMKQSNDESIHQHNAHAE 295
>pir||H72457 hypothetical protein APE2308 - Aeropyrum pernix (strain K1)
>gi|5106009|dbj|BAA81320.1| (AP000064) 283aa long
hypothetical protein [Aeropyrum pernix]
Length = 283
Score = 105 bits (259), Expect = 6e-22
Identities = 83/277 (29%), Positives = 135/277 (47%), Gaps = 28/277 (10%)
Query: 6 VETQEEEPEIKIPLPRVGITNLRTIAKINWKGRIYTFIPTFEVTIDLPREKKGIHMSRLV 65
++ Q+ +P + L RVG +R A + T +V +DL R K+G+H+SR +
Sbjct: 1 MDVQDLKPPKPLYLERVGFRGVRRRALLETPEGPVTLDLELDVFVDLDRSKRGVHLSRNI 60
Query: 66 ESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEEKHKH-KRAEVWIRTTLILEKTTPAS 124
E++ +SE + S+E L ++ K L +H + ++A V RT ++ A+
Sbjct: 61 EAVEAVVSE-------RRARSIEGLLRSIAKELLSRHGYAEKATVRARTRYYID--LEAA 111
Query: 125 RKLSYEPYDVEVAV-IKEGKDVKKRLKVRVIGNTACPHAMAN----------NNGKTHIQ 173
EP DV V V + + R+ V V G T CP A + + +H Q
Sbjct: 112 GVKGREPVDVAVTVSLTRSGGERWRVAVSVKGMTVCPSAQSTIAEAEGISDPSRAPSHSQ 171
Query: 174 RAIGELEVMADFNEE-IALEDMIEVVESSFSSPTYTLLKTPDENAVVRKMYENPKFVEDV 232
+ + L+ D + + +ED+ + SFS+PT+TLLK P E ++ + + P FVEDV
Sbjct: 172 KVL--LKGTVDTGKVMVRIEDLARALLQSFSAPTFTLLKKPQEARLILEAFTRPMFVEDV 229
Query: 233 AREILMK--AREKFPGR--IHVRVISNESIHKHDVIA 265
RE + A PG + V +S ESIH HD++A
Sbjct: 230 VREAAWRIAAIPYIPGEALLQVEAVSLESIHPHDLVA 266
>pir||C81949 hypothetical protein NMA1013 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379715|emb|CAB84282.1|
(AL162754) hypothetical protein NMA1013 [Neisseria
meningitidis Z2491]
Length = 257
Score = 97.5 bits (239), Expect = 1e-19
Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 14/250 (5%)
Query: 17 IPLPRVGITNLRTIAKINWKGRIYTFIPTFEVTIDLPREKKGIHMSRLVESITDAMSEAV 76
+P+ +VGI +LR + I + + +T+ LP E+KG HMSR V ++ + +EA+
Sbjct: 16 LPINQVGIKDLRFPITLQTAEGIQSTVARLTMTVYLPAEQKGTHMSRFV-ALMEQHTEAL 74
Query: 77 EEEVKKIHTSLEELALAVIKRLEEKHKHKRAEVWIRTTLILEKTTPASRKLSYEPYDVEV 136
+ L L ++ L+ + ++ + +KT P S S YDV +
Sbjct: 75 D------FAQLRRLTAEMVALLDSR----AGKISVSFPFFRKKTAPVSGIRSLLDYDVSL 124
Query: 137 AVIKEGKDVKKRLKVRVIGNTACPHAMANNNGKTHIQRAIGELEVMADFNEEIALEDMIE 196
+ +KV + + CP + + H QR+ + + AD E+ +E++I+
Sbjct: 125 TGEMKDGAYGHSMKVMIPVTSLCPCSKEISQYGAHNQRSHVTVSLTAD--AEVGIEEVID 182
Query: 197 VVESSFSSPTYTLLKTPDENAVVRKMYENPKFVEDVAREILMK-AREKFPGRIHVRVISN 255
VE+ S Y LLK PDE V K YENPKFVED+ R++ +K V +
Sbjct: 183 YVEAQASCQLYGLLKRPDEKYVTEKAYENPKFVEDMVRDVATSLIADKRIKSFVVESENF 242
Query: 256 ESIHKHDVIA 265
ESIH H A
Sbjct: 243 ESIHNHSAYA 252
>pir||B81155 conserved hypothetical protein NMB0803 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226037|gb|AAF41216.1| (AE002434) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 257
Score = 97.1 bits (238), Expect = 2e-19
Identities = 77/251 (30%), Positives = 122/251 (47%), Gaps = 16/251 (6%)
Query: 17 IPLPRVGITNLRTIAKINWKGRIYTFIPTFEVTIDLPREKKGIHMSRLVESITDAMSEAV 76
+P+ +VGI +LR + I + I +T+ LP E+KG HMSR V ++ + +EA+
Sbjct: 16 LPINQVGIKDLRFPITLQTAEGIQSTIARLTMTVYLPAEQKGTHMSRFV-ALMEQHAEAL 74
Query: 77 EEEVKKIHTSLEELALAVIKRLEEKHKHKRAEVWIRTTLILEKTTPASRKLSYEPYDVEV 136
+ L +L ++ L+ + ++ + +KT P S S YDV +
Sbjct: 75 D------FAQLRKLTTEMVALLDSR----AGKISVSFPFFRKKTAPVSGIRSLLDYDVCL 124
Query: 137 A-VIKEGKDVKKRLKVRVIGNTACPHAMANNNGKTHIQRAIGELEVMADFNEEIALEDMI 195
IK+G +KV + + CP + + H QR+ + + AD E+ +E++I
Sbjct: 125 TGEIKDGA-YGHSMKVMIPVTSLCPCSKEISQYGAHNQRSHVTVSLTAD--AEVGIEEVI 181
Query: 196 EVVESSFSSPTYTLLKTPDENAVVRKMYENPKFVEDVAREILMK-AREKFPGRIHVRVIS 254
+ VE+ S Y LLK PDE V K YENPKFVED+ R++ +K V +
Sbjct: 182 DYVEAQASCQLYGLLKRPDEKYVTEKAYENPKFVEDMVRDVATSLIADKRIKSFVVESEN 241
Query: 255 NESIHKHDVIA 265
ESIH H A
Sbjct: 242 FESIHNHSAYA 252
>emb|CAC12264.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 286
Score = 93.2 bits (228), Expect = 3e-18
Identities = 82/286 (28%), Positives = 132/286 (45%), Gaps = 41/286 (14%)
Query: 5 YVETQEEEPEIKIPLPRVGITNLRTIAKINWKGRIYTFIPTFEVTIDLPREKKGIHMSRL 64
+++ Q+E P I+I + RVG+ N++ KI+ + F+ T + +D+P ++KG MSR
Sbjct: 4 FLDVQKETPRIRIAIDRVGVKNIKFPLKIHDD---FAFL-TLNLFVDVPADRKGADMSRA 59
Query: 65 VESITDAMSE-AVEEEVKKIHTSLEELALAVIKRLEEKHKHKRAEVWIRTTLILEKTTPA 123
VESI ++ + E + I ++ + AL+ E+ + + R+
Sbjct: 60 VESIQKVINAGSYGERIGDIGIAICDEALSRFNYSEKAQCEVNIQYYRRS---------G 110
Query: 124 SRKLSYEPYDVEVAVIKEGKDV-KKRLKVRVIGNTACPHAMANNNGK------------- 169
R L Y Y V K+ K + K + + + TACP AM
Sbjct: 111 ERYLEYRMY---VETAKDRKQIMKNEIGISYVTMTACPCAMETTRALISMDNPDISDAIS 167
Query: 170 -----THIQRAIGELEVMADFNEEIALEDMIEVVESSFSSPTYTLLKTPDENAVVRKMYE 224
TH QR + +L V + ++ I + D+ +V+E P +LLK +E +V +
Sbjct: 168 AIPTITHNQRNVTKLTV-DNRSKMITVWDLADVMERVQGKPLDSLLKRVEEGRLVYSAHR 226
Query: 225 NPKFVEDVAREILMKAREKF----PGRIHVRVISNESIHKHDVIAE 266
NPKFVEDV REI +A I V S+ESIH H+ AE
Sbjct: 227 NPKFVEDVVREIAYEAARVLGVPDEATIKVSSESDESIHPHNAYAE 272
>dbj|BAB04717.1| (AP001510) unknown conserved protein [Bacillus halodurans]
Length = 299
Score = 90.5 bits (221), Expect = 2e-17
Identities = 79/276 (28%), Positives = 122/276 (43%), Gaps = 25/276 (9%)
Query: 2 RELYVETQEEEPEIKIPLPRVGITNLR--TIAKINWKGRIYTFIPTFEVTIDLPREKKGI 59
+E + Q + L VGI N++ I + N K T + TF +T L + KGI
Sbjct: 30 KEEMADLQNMPNDFLFALDSVGIHNVKHPCIIQSNLKPYEQTTVGTFSLTTGLEQMSKGI 89
Query: 60 HMSRLVESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEEKHKHKRAEVWIRTTLILEK 119
+MSRL E + + +K + ++LA +R+E+ H V + E+
Sbjct: 90 NMSRLTELLQEYHQTGFILSLKNMQAFTKDLA----ERMEQSSAH----VHVTFPWFFER 141
Query: 120 TTPASRKLSYEPYDVEVAV-IKEGKDVKKRLKVRVIGNTACPHAMANNNGKTHIQRAIGE 178
+P+ K+ + + V E + + T CP + + H QR G
Sbjct: 142 ESPSLNKIGLAHAEARLNVHFDETLGFTHEVGLTAAVTTLCPCSKEISEYSAHNQR--GY 199
Query: 179 LEVMADFNEEIALED-----MIEVVESSFSSPTYTLLKTPDENAVVRKMYENPKFVEDVA 233
+ + A F E D ++E ES+ SS Y +LK PDE AV K YENP+FVED+
Sbjct: 200 VTIKATFYEPTEGSDDWKVTLLEAAESNASSILYPVLKRPDEKAVTEKAYENPRFVEDMV 259
Query: 234 REILMKAREKFPGR----IHVRVISNESIHKHDVIA 265
R + A + + V + ESIH+HD IA
Sbjct: 260 R---LTAADLYENETIKAFTVECRNEESIHQHDAIA 292
>pir||H69759 conserved hypothetical protein yciA - Bacillus subtilis
>gi|1805406|dbj|BAA08968.1| (D50453) yciA [Bacillus
subtilis] >gi|2632620|emb|CAB12128.1| (Z99105) similar
to hypothetical proteins [Bacillus subtilis]
Length = 305
Score = 79.6 bits (193), Expect = 4e-14
Identities = 66/232 (28%), Positives = 103/232 (43%), Gaps = 14/232 (6%)
Query: 41 TFIPTFEVTIDLPREKKGIHMSRLVESITDAMSEAVEEEVKKIHTSLEELALAVIKRLEE 100
T F +T +LPR +KGI+MSRL T+ + + +SL++ K L E
Sbjct: 72 TTAANFTMTCNLPRNQKGINMSRL----TELLQVYHQNGWILSFSSLQQFT----KELAE 123
Query: 101 KHKHKRAEVWIRTTLILEKTTPASRKLSYEPYDVEVAVI-KEGKDVKKRLKVRVIGNTAC 159
A V +R E+ +P K D+ ++V ++ + K+R + T C
Sbjct: 124 NMDTSSATVEVRFPWFFERKSPKLEKAGLMHADIFMSVTYRKDQPFKQRAGISAKVTTLC 183
Query: 160 PHAMANNNGKTHIQRA----IGELEVMADFNEEIALEDMIEVVESSFSSPTYTLLKTPDE 215
P + + H QR +G + A D+ ES+ S+ + +LK PDE
Sbjct: 184 PCSKEISEYSAHNQRGTVKHLGRIFTRAASLPSDVKADLPHAAESNASARLHPVLKRPDE 243
Query: 216 NAVVRKMYENPKFVEDVAREILMKARE-KFPGRIHVRVISNESIHKHDVIAE 266
AV YENP+FVED+AR I E ++ + + ESIH H + E
Sbjct: 244 KAVTETAYENPRFVEDLARLIAADLFELEWVSAFEIECRNEESIHLHRCLCE 295
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94490136
Number of Sequences: 2977
Number of extensions: 3693969
Number of successful extensions: 13005
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 12971
Number of HSP's gapped (non-prelim): 16
length of query: 269
length of database: 189,106,746
effective HSP length: 60
effective length of query: 209
effective length of database: 153,197,526
effective search space: 32018282934
effective search space used: 32018282934
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 164 (68.3 bits)