BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0225 (PAB0225) DE:Hypothetical protein
         (156 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75149 hypothetical protein PAB0225 - Pyrococcus abyssi (st...   307  6e-83
pir||A71189 hypothetical protein PH1785 - Pyrococcus horikoshii ...   210  7e-54

>pir||A75149 hypothetical protein PAB0225 - Pyrococcus abyssi (strain Orsay)
           >gi|5457782|emb|CAB49272.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 156
           
 Score =  307 bits (777), Expect = 6e-83
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   MKKALSIALTLYFILGLALVVHENSWFSFSKNALSDMGSLRNPKGWMFNVFIIGLGLLGL 60
           MKKALSIALTLYFILGLALVVHENSWFSFSKNALSDMGSLRNPKGWMFNVFIIGLGLLGL
Sbjct: 1   MKKALSIALTLYFILGLALVVHENSWFSFSKNALSDMGSLRNPKGWMFNVFIIGLGLLGL 60

Query: 61  VTSLMLKRKILTLSMAFLVLVGVFPEEKPLHTPSAILTYILAFTDMVIYGGIWRVVGIGT 120
           VTSLMLKRKILTLSMAFLVLVGVFPEEKPLHTPSAILTYILAFTDMVIYGGIWRVVGIGT
Sbjct: 61  VTSLMLKRKILTLSMAFLVLVGVFPEEKPLHTPSAILTYILAFTDMVIYGGIWRVVGIGT 120

Query: 121 FMVMLFLINLKVGLAIPELIGAASILAYILYLGERA 156
           FMVMLFLINLKVGLAIPELIGAASILAYILYLGERA
Sbjct: 121 FMVMLFLINLKVGLAIPELIGAASILAYILYLGERA 156


>pir||A71189 hypothetical protein PH1785 - Pyrococcus horikoshii
           >gi|3258221|dbj|BAA30904.1| (AP000007) 156aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 156
           
 Score =  210 bits (529), Expect = 7e-54
 Identities = 92/153 (60%), Positives = 127/153 (82%)

Query: 1   MKKALSIALTLYFILGLALVVHENSWFSFSKNALSDMGSLRNPKGWMFNVFIIGLGLLGL 60
           MK+ ++I + +YFI+GLALV+ +N WFSF+KNALSDMGS +NPKGWMFN++IIGLG++G+
Sbjct: 1   MKREVTIVMVIYFIIGLALVISQNPWFSFTKNALSDMGSAKNPKGWMFNLYIIGLGIIGI 60

Query: 61  VTSLMLKRKILTLSMAFLVLVGVFPEEKPLHTPSAILTYILAFTDMVIYGGIWRVVGIGT 120
           + + +L R +L +SM  L+LVG+FPEE+P HTPSAIL Y+L+F DM +Y   WR++   T
Sbjct: 61  IVANLLNRNLLKISMILLILVGIFPEEEPPHTPSAILMYLLSFIDMGLYSRTWRIIATIT 120

Query: 121 FMVMLFLINLKVGLAIPELIGAASILAYILYLG 153
           F +M+ L++ K+GLAIPELIGAA+IL+YILYLG
Sbjct: 121 FTIMVILVSFKIGLAIPELIGAAAILSYILYLG 153


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.146    0.431 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54067348
Number of Sequences: 2977
Number of extensions: 2129969
Number of successful extensions: 7420
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7418
Number of HSP's gapped (non-prelim): 2
length of query: 156
length of database: 189,106,746
effective HSP length: 50
effective length of query: 106
effective length of database: 159,182,396
effective search space: 16873333976
effective search space used: 16873333976
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 162 (67.5 bits)