BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0226 (THII) DE:THIAMIN BIOSYNTHESIS PROTEIN THII
(198 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75149 thiamin biosynthesis protein thII PAB0226 - Pyrococc... 394 e-109
pir||B71189 hypothetical protein PH1786 - Pyrococcus horikoshii ... 326 1e-88
sp|Q58341|THII_METJA PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 171 5e-42
pir||T44564 probable thiamin biosynthesis protein thiI [imported... 151 5e-36
sp|O27720|THII_METTH PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 126 2e-28
gi|11498485 conserved hypothetical protein [Archaeoglobus fulgid... 111 8e-24
sp|Q9X220|THII_THEMA PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 104 6e-22
sp|O83570|THII_TREPA PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 103 1e-21
dbj|BAB06922.1| (AP001518) thiamin biosynthesis [Bacillus halodu... 97 2e-19
gb|AAK40666.1| Thiamine biosynthesis protein thiI (thiI) [Sulfol... 91 7e-18
sp|P47612|THII_MYCGE PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 90 1e-17
sp|O34595|THII_BACSU PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 90 2e-17
sp|P77718|THII_ECOLI THIAMINE BIOSYNTHESIS PROTEIN THII >gi|7467... 89 5e-17
sp|P55913|THII_SALTY THIAMINE BIOSYNTHESIS PROTEIN THII >gi|1135... 88 8e-17
pir||E82267 thiamin biosynthesis protein ThiI VC0894 [imported] ... 87 2e-16
pir||C82892 thiamin biosynthesis protein UU418 [imported] - Urea... 84 1e-15
emb|CAC11646.1| (AL445064) thiazole biosynthesis protein Thi I r... 84 1e-15
sp|Q9YEW8|THII_AERPE PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 82 5e-15
sp|P75228|THII_MYCPN PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII... 81 8e-15
gb|AAG19645.1| (AE005052) Vng1299c [Halobacterium sp. NRC-1] 79 4e-14
pir||F83005 thiazole biosynthesis protein ThiI PA5118 [imported]... 72 5e-12
>pir||B75149 thiamin biosynthesis protein thII PAB0226 - Pyrococcus abyssi
(strain Orsay) >gi|5457783|emb|CAB49273.1| (AJ248284)
THIAMIN BIOSYNTHESIS PROTEIN THII [Pyrococcus abyssi]
Length = 198
Score = 394 bits (1002), Expect = e-109
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MKVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKENKVRRIVKRLQEIHGDKVKDP 60
MKVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKENKVRRIVKRLQEIHGDKVKDP
Sbjct: 1 MKVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKENKVRRIVKRLQEIHGDKVKDP 60
Query: 61 RIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVAS 120
RIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVAS
Sbjct: 61 RIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVAS 120
Query: 121 QTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFPVVRA 180
QTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFPVVRA
Sbjct: 121 QTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFPVVRA 180
Query: 181 GLGEFRKILNEVKDLLPK 198
GLGEFRKILNEVKDLLPK
Sbjct: 181 GLGEFRKILNEVKDLLPK 198
>pir||B71189 hypothetical protein PH1786 - Pyrococcus horikoshii
>gi|3258222|dbj|BAA30905.1| (AP000007) 201aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 201
Score = 326 bits (827), Expect = 1e-88
Identities = 152/198 (76%), Positives = 182/198 (91%)
Query: 1 MKVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKENKVRRIVKRLQEIHGDKVKDP 60
M+V+ LLSSGIDSPVAIHL+AS+GAEVYPLHF+QD++KE K R++V RL+EIHG+KVKD
Sbjct: 4 MRVIGLLSSGIDSPVAIHLMASRGAEVYPLHFRQDEIKEKKARKLVSRLKEIHGEKVKDL 63
Query: 61 RIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVAS 120
++VDA +VQGPVFEKLRE+++EKW CIFCKYTMY+VA YARE+ A+AIVTGDSLGQVAS
Sbjct: 64 KVVDALKVQGPVFEKLRELKREKWICIFCKYTMYMVAEKYAREVGAEAIVTGDSLGQVAS 123
Query: 121 QTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFPVVRA 180
QTLDNLMV+STAT LPI+RPLIALDKEEIVRIAKEIGTF+IS E EPPCPF+P+FPVVRA
Sbjct: 124 QTLDNLMVISTATNLPIIRPLIALDKEEIVRIAKEIGTFEISIENEPPCPFLPKFPVVRA 183
Query: 181 GLGEFRKILNEVKDLLPK 198
G +FRKIL E++++LPK
Sbjct: 184 GFSQFRKILEEIREVLPK 201
>sp|Q58341|THII_METJA PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|2128072|pir||C64416
conserved hypothetical MG372 related protein -
Methanococcus jannaschii >gi|1591602|gb|AAB98933.1|
(U67536) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 381
Score = 171 bits (429), Expect = 5e-42
Identities = 95/192 (49%), Positives = 124/192 (64%), Gaps = 2/192 (1%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKENKVRRIVKRLQEIHGDKVKDPR 61
KV+ L+S GIDSPVA ++ +G LH K + NKVR+IV+ L + D +
Sbjct: 190 KVLCLISDGIDSPVAAFMMIRRGCRAVLLHLKMSEEALNKVRKIVEVLSDY--DTELEFV 247
Query: 62 IVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVASQ 121
+ D + + EKL+ I+KE +TCIFCK M VA YA+ + AIVTGD+LGQVASQ
Sbjct: 248 VYDYKKDIEDIVEKLKSIKKENYTCIFCKRKMLKVAEKYAKYLDCDAIVTGDNLGQVASQ 307
Query: 122 TLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFPVVRAG 181
TL NL V+S PILRPLI LDK +IV+IAKEIGT++ISTEKE CP++P+ P A
Sbjct: 308 TLKNLRVISENINYPILRPLIGLDKNDIVKIAKEIGTYEISTEKEIKCPYLPKHPKTIAK 367
Query: 182 LGEFRKILNEVK 193
E +KI +VK
Sbjct: 368 PEEVKKIKEKVK 379
>pir||T44564 probable thiamin biosynthesis protein thiI [imported] - Pyrococcus
furiosus >gi|6066237|gb|AAF03222.1|AF156097_2 (AF156097)
putative thiamine biosynthesis protein THII [Pyrococcus
furiosus]
Length = 363
Score = 151 bits (378), Expect = 5e-36
Identities = 88/196 (44%), Positives = 117/196 (58%), Gaps = 8/196 (4%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKENKVRRIVKRLQEIHGDKVKDPR 61
KVVAL+S GIDSPVA L+ +GAEV LHF Q +++V+++ EI D +P
Sbjct: 167 KVVALISGGIDSPVAAFLMLKRGAEVIALHFDQG----TNAKKVVEKVVEILSDYSPEPI 222
Query: 62 ---IVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQV 118
+ + FE+ P L +++K +WTCI CK M A A+E A IVTGDSLGQV
Sbjct: 223 ELIVENHFEILKPYVSVLAKLQKREWTCILCKIAMLKRAAEIAKEEGALGIVTGDSLGQV 282
Query: 119 ASQTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTE-KEPPCPFVPRFPV 177
ASQTL NL + + + + PI RPLI DKEEIV IAK IGT+D E CPF P +
Sbjct: 283 ASQTLSNLFIETISVDYPIYRPLIGFDKEEIVSIAKRIGTYDAFLEYPYCECPFRPNRVI 342
Query: 178 VRAGLGEFRKILNEVK 193
+ + EF I +E++
Sbjct: 343 TQGKITEFYFIRDELR 358
>sp|O27720|THII_METTH PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|7429876|pir||C69092
conserved hypothetical protein MTH1685 -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622815|gb|AAB86157.1| (AE000926) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 389
Score = 126 bits (314), Expect = 2e-28
Identities = 77/179 (43%), Positives = 95/179 (53%), Gaps = 8/179 (4%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQ----DDVKENKVRRIVKRLQEIHGDKV 57
KVVALLS GIDSPVA +L+ +G +V +H + E KV +I +L E
Sbjct: 179 KVVALLSGGIDSPVATYLMMKRGCQVVAVHMDNAPFTGEEAEEKVEKIAAKLAEYSAGVE 238
Query: 58 KDPRIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQ 117
R G E R EK TC+ CK+ MY +A A E A AIV G SLGQ
Sbjct: 239 FKLRTFS----YGRYLESCRRGAPEKMTCVLCKFGMYHLAEMVAEEEGALAIVDGSSLGQ 294
Query: 118 VASQTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFP 176
VASQTL N++ +PIL PLI +DK EI +AK IGT+DIS + C VP P
Sbjct: 295 VASQTLPNILATRMGVNIPILSPLIGMDKVEIENLAKRIGTYDISVIPDGGCSAVPAHP 353
>gi|11498485 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3915121|sp|O29382|THII_ARCFU PROBABLE THIAMINE
BIOSYNTHESIS PROTEIN THII >gi|7429877|pir||G69359
conserved hypothetical protein AF0879 - Archaeoglobus
fulgidus >gi|2649723|gb|AAB90361.1| (AE001043) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 374
Score = 111 bits (274), Expect = 8e-24
Identities = 78/191 (40%), Positives = 109/191 (56%), Gaps = 10/191 (5%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKENKVRRIVKRLQEIHGD---KVK 58
KVVAL+S GIDSPVA + +G EV +HF + KVR ++ L E + K+K
Sbjct: 167 KVVALISGGIDSPVAAFMAMKRGCEVVAVHFFNQTMHSPKVREKIRMLAEKLAEYQGKIK 226
Query: 59 DPRIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQV 118
+V EVQ + ++ K + + +M +A A + KA+VTGDSL QV
Sbjct: 227 -LYMVPFKEVQFEIINRV----PPKLRMVVYRRSMMRMANLIAEKEGCKAVVTGDSLSQV 281
Query: 119 ASQTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDIS-TEKEPPCPF-VPRFP 176
ASQTLDN+ V+ +A++L +L PLI +DKEEIV IAK I T++IS E C F V + P
Sbjct: 282 ASQTLDNINVIYSASKLAVLPPLIGMDKEEIVAIAKRIETYEISILPYEDCCSFMVAQHP 341
Query: 177 VVRAGLGEFRK 187
RA + + K
Sbjct: 342 ETRAKIEDVVK 352
>sp|Q9X220|THII_THEMA PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|7445342|pir||H72223
thiamin biosynthesis protein ThiI - Thermotoga maritima
(strain MSB8) >gi|4982270|gb|AAD36761.1|AE001809_13
(AE001809) thiamin biosynthesis protein ThiI [Thermotoga
maritima]
Length = 388
Score = 104 bits (258), Expect = 6e-22
Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 10/200 (5%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKEN----KVRRIVKRLQEIHGDKV 57
K V LLS GIDSPVA +G + + F KVR I++ L+E G
Sbjct: 176 KAVLLLSGGIDSPVAGWYALKRGVLIESVTFVSPPFTSEGAVEKVRDILRVLREFSGGHP 235
Query: 58 KDPRIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQ 117
IV+ ++Q V +++ +K++ I + +M+ +A A E A A TG+++GQ
Sbjct: 236 LRLHIVNLTKLQLEVKKRV----PDKYSLIMYRRSMFRIAEKIAEETGAVAFYTGENIGQ 291
Query: 118 VASQTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEK-EPPCP-FVPRF 175
VASQTL+NL + + T P++RPL DK EIV AKEIGT++IS + + C F P+
Sbjct: 292 VASQTLENLWSIESVTTRPVIRPLSGFDKTEIVEKAKEIGTYEISIKPYQDSCVFFAPKN 351
Query: 176 PVVRAGLGEFRKILNEVKDL 195
P R+ K+ +V DL
Sbjct: 352 PATRSHPSILEKLEQQVPDL 371
>sp|O83570|THII_TREPA PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|7429878|pir||C71310
conserved hypothetical protein TP0559 - syphilis
spirochete >gi|3322853|gb|AAC26563.1| (AE001231)
conserved hypothetical protein [Treponema pallidum]
Length = 401
Score = 103 bits (255), Expect = 1e-21
Identities = 68/186 (36%), Positives = 101/186 (53%), Gaps = 8/186 (4%)
Query: 6 LLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKENKVRRIVKRLQEIHGDKVKDPR--IV 63
LLS GIDSPVA + + S+G + L+F + ++ V+ L ++ +V
Sbjct: 186 LLSGGIDSPVAGYRMLSRGMHIDCLYFHSYPYTPPEAQKKVEDLAKVLARYGLSTTLTVV 245
Query: 64 DAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVASQTL 123
++Q ++L+ + + M +A ARE +A+ ++TG+SL QVASQTL
Sbjct: 246 SLTDIQ----KQLQTHAPAPSLTLLLRMCMMRIAEHVAREQRARCLITGESLAQVASQTL 301
Query: 124 DNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPC--PFVPRFPVVRAG 181
+NL V S T LPI RPLI DKE+I+R A EIGT+ IS C F P+ PV+R
Sbjct: 302 ENLTVTSACTHLPIFRPLIGADKEDIIRTATEIGTYAISIRPYEDCCTLFAPKHPVLRPE 361
Query: 182 LGEFRK 187
+ E +K
Sbjct: 362 VEEMQK 367
>dbj|BAB06922.1| (AP001518) thiamin biosynthesis [Bacillus halodurans]
Length = 382
Score = 96.7 bits (237), Expect = 2e-19
Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKENKVRRIVKRLQEI---HGDKVK 58
KV+ +LS GIDSPVA + + +G + +HF K ++ V L G +VK
Sbjct: 159 KVLLMLSGGIDSPVAGYYLLKRGVTLEAIHFHSPPFTNEKAKQKVVDLAAKLTNFGGQVK 218
Query: 59 DPRIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQV 118
IV E+Q + EK+ + M ++ A++ A AI TG+SLGQV
Sbjct: 219 -LHIVPFTELQKHIHEKV----PSNMEMTIMRRMMLRISEGIAKKTDALAIATGESLGQV 273
Query: 119 ASQTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDIS 162
ASQTL ++ ++ T P+LRPL+ +DKEE++ +AKEI TF+IS
Sbjct: 274 ASQTLHSMNTINEVTTTPVLRPLLTMDKEEVITVAKEIDTFNIS 317
>gb|AAK40666.1| Thiamine biosynthesis protein thiI (thiI) [Sulfolobus solfataricus]
Length = 371
Score = 91.3 bits (223), Expect = 7e-18
Identities = 65/171 (38%), Positives = 91/171 (53%), Gaps = 10/171 (5%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQD-DVKENKVRRIVKRLQEIHGD-KVKD 59
K V L S GIDSPVA ++ +G+ L+F D+ + V + + L+ G K+K
Sbjct: 170 KTVVLFSGGIDSPVATWMMMKRGSVPIILNFNLGGDLHKELVLKELNMLKRWSGGHKLK- 228
Query: 60 PRIVDAFEVQGP-VFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQV 118
F V+G VF KL ++ + + K MY A + AK+I TG+SL QV
Sbjct: 229 -----IFIVKGTDVFIKLSQVERRS-RVVMLKRVMYKTAEKLCEKTNAKSITTGESLSQV 282
Query: 119 ASQTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPC 169
+SQT+ NL V + PI RPLI DKEEIV IA++IGT+ S + C
Sbjct: 283 SSQTMANLYVTEYGIKYPIFRPLIGFDKEEIVDIARKIGTYKHSIKLPEYC 333
>sp|P47612|THII_MYCGE PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|1361675|pir||B64241
hypothetical protein MG372 - Mycoplasma genitalium
>gi|3844960|gb|AAC71599.1| (U39719) NTP-utilizing enzyme
(GuaA family) [Mycoplasma genitalium]
Length = 385
Score = 90.5 bits (221), Expect = 1e-17
Identities = 68/204 (33%), Positives = 107/204 (52%), Gaps = 12/204 (5%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKENK-VRRIVKRLQEIHGDKVKDP 60
K + LLS GIDSPVA LV +G + + F + K K + +I + I +K
Sbjct: 179 KALVLLSGGIDSPVAASLVMQRGFNIDFITFINEPNKNQKTIEKITRLANLISFNKTICS 238
Query: 61 RIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVAS 120
+ F+ + ++L I E + + + Y A+ + K +VTG+ LGQVAS
Sbjct: 239 GKLLVFDFTA-IQKELIHISNESYRIVLMRRVFYKAASMF----KYDCLVTGEVLGQVAS 293
Query: 121 QTLDNLMVMSTAT-ELPILRPLIALDKEEIVRIAKEIGTFDISTEK--EPPCPFVPRFPV 177
QT++NL V+ +AT + I+RPLI K++I+ +AK TFDIS E+ + F P+ P
Sbjct: 294 QTIENLKVIQSATPDTFIVRPLIGFSKDKIIELAKFFNTFDISIEQHLDTCSEFSPKNPT 353
Query: 178 VRAGLGEFRKILNE---VKDLLPK 198
+A L K+ +E + DL+ K
Sbjct: 354 TKAKLINVEKLESELIFLNDLIEK 377
>sp|O34595|THII_BACSU PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|7429879|pir||E69988
conserved hypothetical protein ytbJ - Bacillus subtilis
>gi|2293230|gb|AAC00308.1| (AF008220) YtbJ [Bacillus
subtilis] >gi|2635442|emb|CAB14936.1| (Z99119) similar
to hypothetical proteins [Bacillus subtilis]
Length = 358
Score = 89.7 bits (219), Expect = 2e-17
Identities = 59/172 (34%), Positives = 88/172 (50%), Gaps = 10/172 (5%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQ----DDVKENKVRRIVKRLQEIHGDKV 57
K + +LS G DSPVA +G V +HF + + KV + K L G
Sbjct: 179 KAMLMLSGGFDSPVAGFYAMKRGLSVEAVHFFSPPYTSERAKQKVMDLAKCLSRFGGSMT 238
Query: 58 KDPRIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQ 117
IV + Q E +++ E +T + M +A + AI+TG+SLGQ
Sbjct: 239 L--HIVPFTKTQ----ELIQKQIPENYTMTATRRLMLQIADRIREKRNGLAIITGESLGQ 292
Query: 118 VASQTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPC 169
VASQTL+++ ++ T PILRPLIA+DK EI+ ++EIGT++ S + C
Sbjct: 293 VASQTLESMYAINAVTSTPILRPLIAMDKTEIIEKSREIGTYETSIQPFEDC 344
>sp|P77718|THII_ECOLI THIAMINE BIOSYNTHESIS PROTEIN THII >gi|7467031|pir||G64771 yajK
protein - Escherichia coli >gi|1773107|gb|AAB40179.1|
(U82664) similar to M. jannaschii MG372 [Escherichia
coli] >gi|1786625|gb|AAC73526.1| (AE000148) putative
oxidoreductase [Escherichia coli K12]
Length = 482
Score = 88.5 bits (216), Expect = 5e-17
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 6/180 (3%)
Query: 3 VVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVK-ENKVRRIVKRLQEIHGDKVKDPR 61
V++L+S G DS V+ +++ +G V+ F E VR++ L G +
Sbjct: 180 VLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRF 239
Query: 62 IVDAFE-VQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVAS 120
+ FE V G + EK+ + + + K M A+ A +A+VTG++LGQV+S
Sbjct: 240 VAINFEPVVGEILEKIDDGQMG----VILKRMMVRAASKVAERYGVQALVTGEALGQVSS 295
Query: 121 QTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFPVVRA 180
QTL NL ++ ++ ILRPLI+ DKE I+ +A++IGT D + C + + P V+A
Sbjct: 296 QTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTEDFARTMPEYCGVISKSPTVKA 355
>sp|P55913|THII_SALTY THIAMINE BIOSYNTHESIS PROTEIN THII >gi|11354259|pir||T46944 thiamin
biosynthesis protein thiI [validated] - Salmonella
typhimurium >gi|2098763|gb|AAB63031.1| (U94901) ThiI
[Salmonella typhimurium]
Length = 482
Score = 87.8 bits (214), Expect = 8e-17
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 6/180 (3%)
Query: 3 VVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVK-ENKVRRIVKRLQEIHGDKVKDPR 61
V++L+S G DS V+ +++ +G V+ F E VR++ L G +
Sbjct: 180 VLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRF 239
Query: 62 IVDAFE-VQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVAS 120
+ FE V G + EK+ + + + K M A+ A +A+VTG++LGQV+S
Sbjct: 240 VAINFEPVVGEILEKVDDGQMG----VVLKRMMVRAASKVAERYGVQALVTGEALGQVSS 295
Query: 121 QTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFPVVRA 180
QTL NL ++ ++ ILRPLI+ DKE I+ +A++IGT D + C + + P V+A
Sbjct: 296 QTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTEDFARTMPEYCGVISKSPTVKA 355
>pir||E82267 thiamin biosynthesis protein ThiI VC0894 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655349|gb|AAF94056.1| (AE004173) thiamin
biosynthesis protein ThiI [Vibrio cholerae]
Length = 515
Score = 86.6 bits (211), Expect = 2e-16
Identities = 60/179 (33%), Positives = 93/179 (51%), Gaps = 4/179 (2%)
Query: 3 VVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDD-VKENKVRRIVKRLQEIHGDKVKDPR 61
V++L+S G DS V+ +L +G++V+ F E V++ L + +G K
Sbjct: 212 VLSLISGGFDSGVSSYLHIKRGSKVHYCFFNLGGPAHEIGVKQTAYYLWQKYGSSAKVRF 271
Query: 62 IVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVASQ 121
I F PV ++ E + + K A A + +A+VTG++LGQV+SQ
Sbjct: 272 IAIDF---APVVAEILEKIDDGQMGVVLKRMFMRTAGMVAEKFGIQALVTGEALGQVSSQ 328
Query: 122 TLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFPVVRA 180
TL NL + T+ ILRPLI DKE+I+R+A+EIGT D + C + + P V+A
Sbjct: 329 TLTNLRHIDNVTDTLILRPLINWDKEDIIRLAREIGTEDFAKTMPEFCGVISKSPTVKA 387
>pir||C82892 thiamin biosynthesis protein UU418 [imported] - Ureaplasma
urealyticum >gi|6899407|gb|AAF30829.1|AE002139_2
(AE002139) thiamin biosynthesis protein [Ureaplasma
urealyticum]
Length = 390
Score = 83.9 bits (204), Expect = 1e-15
Identities = 61/199 (30%), Positives = 102/199 (50%), Gaps = 15/199 (7%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEV------YPLHFKQDDVKENKVRRIVKRLQEIHGD 55
K + LLS GIDSPVA L+ +G + P H Q + +K + K++ +
Sbjct: 176 KALVLLSGGIDSPVASRLIMKRGISIDFITFITPPHTSQKAL--DKTIALAKQITLDNKL 233
Query: 56 KVKDPRIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSL 115
+ + + ++Q +++ I KE + + +A A +KA A+VTG++L
Sbjct: 234 TKANLYVCNFTKLQ----DEIAHISKESYRITLMRRYFMRIAKRLAISVKANALVTGEAL 289
Query: 116 GQVASQTLDNLMVMSTATE-LPILRPLIALDKEEIVRIAKEIGTFDIS-TEKEPPCP-FV 172
GQVASQTL+++ +S+ + +LRPLIA DKEEI+ +AK T+++S + C F
Sbjct: 290 GQVASQTLNSMQTISSVLDNFLVLRPLIAYDKEEIISLAKRFNTYELSILPYDDSCSLFA 349
Query: 173 PRFPVVRAGLGEFRKILNE 191
P+ P + K+ E
Sbjct: 350 PKNPTTNPNVQTAAKLEEE 368
>emb|CAC11646.1| (AL445064) thiazole biosynthesis protein Thi I related protein
[Thermoplasma acidophilum]
Length = 469
Score = 83.9 bits (204), Expect = 1e-15
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 25/190 (13%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEV--------YPLHFKQ--DDVKENKVRRIVKRLQE 51
K ++L+S GIDSPV+ ++ +G+ YP+ + D VK+ R R
Sbjct: 158 KYISLVSGGIDSPVSTWMIMKRGSPCDILFCSLSYPVDLRPFVDVVKKLVERWAPYRKPR 217
Query: 52 IHGDKVKDPR-IVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIV 110
I+ V D R ++ ++G + K++ + K +Y +A A E IV
Sbjct: 218 IY---VADCRSLIRTMVIEG----------RTKYSNVTFKRVIYRIAEKIALENGYNGIV 264
Query: 111 TGDSLGQVASQTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCP 170
TG+SLGQV+SQT +NL + + +PILRPLI +DK+E+V +A+ IGTF + E
Sbjct: 265 TGESLGQVSSQTAENLKAIESGIGVPILRPLIGMDKDEVVDMARRIGTFPELSMGEFCSL 324
Query: 171 FVPRFPVVRA 180
F R P++R+
Sbjct: 325 FASR-PIIRS 333
>sp|Q9YEW8|THII_AERPE PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|7445341|pir||H72741
probable thiazole biosynthesis gene thi I APE0465 -
Aeropyrum pernix (strain K1) >gi|5104112|dbj|BAA79428.1|
(AP000059) 412aa long hypothetical thiazole biosynthesis
gene thi I [Aeropyrum pernix]
Length = 412
Score = 81.9 bits (199), Expect = 5e-15
Identities = 64/194 (32%), Positives = 103/194 (52%), Gaps = 7/194 (3%)
Query: 4 VALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDVKENKVRRIVKRLQEIHGDKVKD--PR 61
+AL S G DS VA ++ +G+ V+ L F V E + V+ + + G+ PR
Sbjct: 198 LALYSGGFDSGVAAWMIMRRGSPVH-LAFYDFGVPE-ALEVAVEGAKTLAGEWAWGYRPR 255
Query: 62 IVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVASQ 121
+ +G + + K + + + M + A A +A+VTG+S+GQVASQ
Sbjct: 256 LY-VVNFRGAALI-VNGLVKPSYRTLVLRRLMLLHAQDLAAREGFEALVTGESVGQVASQ 313
Query: 122 TLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFPVVRAG 181
T+ NL ++S+ ELP+LRPL +DK+EIV ++EIG +DI+ + C V + P RA
Sbjct: 314 TVRNLRLISSGLELPVLRPLAGMDKDEIVEKSREIGLYDIARRQVEVCG-VDQPPNPRAS 372
Query: 182 LGEFRKILNEVKDL 195
FR +V+D+
Sbjct: 373 PQGFRSEFEKVRDI 386
>sp|P75228|THII_MYCPN PROBABLE THIAMINE BIOSYNTHESIS PROTEIN THII >gi|2146443|pir||S73618
MG372 homolog G12_orf387 - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1673963|gb|AAB95940.1| (AE000027)
Thiamin biosynthesis protein [Mycoplasma pneumoniae]
Length = 387
Score = 81.1 bits (197), Expect = 8e-15
Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 21/199 (10%)
Query: 4 VALLSSGIDSPVAIHLVASKGAEV-------YPLHFKQDDVKENKVRRIVKRLQEIHGDK 56
+ALLS GIDSPVA LV +G V P H K ++ +V Q + +
Sbjct: 183 LALLSGGIDSPVAASLVLQRGFNVDFITFINEPGHNAATIGKIQRLANLVSLNQTLCTGR 242
Query: 57 VKDPRIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLG 116
+ + D ++Q ++L I E + + + Y +A+ + K ++TG++LG
Sbjct: 243 LF---VFDFTDLQ----KELSHISLEGYRIVLMRRCFYKIASLF----KYDCLITGEALG 291
Query: 117 QVASQTLDNL-MVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTE--KEPPCPFVP 173
QVASQT+DNL ++ + ++RPLI L K++I+ AK +GTF+ S E + F P
Sbjct: 292 QVASQTIDNLKVIQAVVPNTFVIRPLIGLSKDKIIEWAKALGTFETSIEHHMDTCTVFAP 351
Query: 174 RFPVVRAGLGEFRKILNEV 192
+ P +A L K+ +E+
Sbjct: 352 KKPTTKAKLAIVEKLESEL 370
>gb|AAG19645.1| (AE005052) Vng1299c [Halobacterium sp. NRC-1]
Length = 392
Score = 78.8 bits (191), Expect = 4e-14
Identities = 62/188 (32%), Positives = 87/188 (45%), Gaps = 9/188 (4%)
Query: 3 VVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDDV----KENKVRRIVKRLQEIHGDKVK 58
+VAL+S GIDSPVA +GA V PL+ D + V+ L + +
Sbjct: 184 LVALVSGGIDSPVAAWESMRRGAPVIPLYLALGDYGGPDHRARAEAAVRTLDDYAPNHDL 243
Query: 59 DPRIVDAFEVQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQV 118
R+ A G ++L F ++ MY VA A A IVTG+++GQ
Sbjct: 244 SLRVAPA----GDAIDRLAAATGRTRMLSFRRF-MYRVAEHVAEHAGAAGIVTGEAVGQK 298
Query: 119 ASQTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFPVV 178
+SQT NL V+ AT LP+ RPL+ DK+ I A+ I TF S+ PR P+
Sbjct: 299 SSQTTANLGVVDRATTLPVHRPLLTWDKQRITAAARSIDTFRDSSLDVGCNRLAPRQPLT 358
Query: 179 RAGLGEFR 186
A + R
Sbjct: 359 AAPIESVR 366
>pir||F83005 thiazole biosynthesis protein ThiI PA5118 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951416|gb|AAG08503.1|AE004925_1 (AE004925) thiazole
biosynthesis protein ThiI [Pseudomonas aeruginosa]
Length = 484
Score = 71.8 bits (173), Expect = 5e-12
Identities = 52/181 (28%), Positives = 89/181 (48%), Gaps = 6/181 (3%)
Query: 2 KVVALLSSGIDSPVAIHLVASKGAEVYPLHFKQDD-VKENKVRRIVKRLQEIHGDKVKDP 60
+V+ L+S G DS VA + + +G + + F E V + L E +G +
Sbjct: 181 QVLVLMSGGFDSTVAAYQMMRRGMISHFVFFNLGGRAHELGVMEVAHYLWEKYGRSQRVL 240
Query: 61 RIVDAFE-VQGPVFEKLREIRKEKWTCIFCKYTMYIVATSYAREIKAKAIVTGDSLGQVA 119
+ FE V G + K+ + + + K M A+ A ++ A+VTG+++ QV+
Sbjct: 241 FVSVPFEEVVGEILTKV----DDSYMGVTLKRMMLRAASRVAERLELDALVTGEAISQVS 296
Query: 120 SQTLDNLMVMSTATELPILRPLIALDKEEIVRIAKEIGTFDISTEKEPPCPFVPRFPVVR 179
SQTL NL V+ T+ +LRPLI K++I+ A++IGT + + C + P +
Sbjct: 297 SQTLPNLSVIDRVTDTLVLRPLIVSHKQDIIDTARQIGTAEFARHMPEYCGVISVNPTTQ 356
Query: 180 A 180
A
Sbjct: 357 A 357
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.139 0.395
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68120407
Number of Sequences: 2977
Number of extensions: 2617130
Number of successful extensions: 8659
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8626
Number of HSP's gapped (non-prelim): 21
length of query: 198
length of database: 189,106,746
effective HSP length: 55
effective length of query: 143
effective length of database: 156,189,961
effective search space: 22335164423
effective search space used: 22335164423
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)