BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0229 344762 345154 131 !not a gene!
         (131 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71189 hypothetical protein PH1790 - Pyrococcus horikoshii ...   228  3e-59

>pir||F71189 hypothetical protein PH1790 - Pyrococcus horikoshii
           >gi|3258226|dbj|BAA30909.1| (AP000007) 133aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 133
           
 Score =  228 bits (574), Expect = 3e-59
 Identities = 116/131 (88%), Positives = 122/131 (92%)

Query: 1   MSITSFSSSSGTWNRTINRIASTFGSFMKASRASLYLSASVSPTTSVGFPTTACGGNLSL 60
           M ITS SSS+GTW RTI RIASTFGSF+KAS+A+LYLSASVSPTTSVGFPTTACGGNLSL
Sbjct: 3   MLITSSSSSNGTWKRTIRRIASTFGSFVKASKANLYLSASVSPTTSVGFPTTACGGNLSL 62

Query: 61  RNFIVSSLSSASLRPNLATASLAITPAPPPSVIIPILSPLGSLHFAKALAKSNMCSKSSA 120
           +NFIVSSLSSAS  PN ATASLAITPAPPPSVIIPILSPLG+LH AKALAKSNMCSKSSA
Sbjct: 63  KNFIVSSLSSASFNPNFATASLAITPAPPPSVIIPILSPLGNLHLAKALAKSNMCSKSSA 122

Query: 121 LIIPVCLNTAS 131
           LIIPVCL TAS
Sbjct: 123 LIIPVCLKTAS 133


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.125    0.349 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42634340
Number of Sequences: 2977
Number of extensions: 1481254
Number of successful extensions: 7572
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7571
Number of HSP's gapped (non-prelim): 1
length of query: 131
length of database: 189,106,746
effective HSP length: 60
effective length of query: 71
effective length of database: 153,197,526
effective search space: 10877024346
effective search space used: 10877024346
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)