BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0232 (PAB0232) DE:Hypothetical protein
         (144 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75149 hypothetical protein PAB0232 - Pyrococcus abyssi (st...   293  5e-79
pir||B71190 hypothetical protein PH1794 - Pyrococcus horikoshii ...   251  2e-66

>pir||G75149 hypothetical protein PAB0232 - Pyrococcus abyssi (strain Orsay)
           >gi|5457788|emb|CAB49278.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 144
           
 Score =  293 bits (743), Expect = 5e-79
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MLLTNHAKERIAKRLAKRKKIDRIYSALFSFLKNSIRIEVEGTILFTDGSKTLVATRLNG 60
           MLLTNHAKERIAKRLAKRKKIDRIYSALFSFLKNSIRIEVEGTILFTDGSKTLVATRLNG
Sbjct: 1   MLLTNHAKERIAKRLAKRKKIDRIYSALFSFLKNSIRIEVEGTILFTDGSKTLVATRLNG 60

Query: 61  EYLDLKDIIGRVKDIEENYECVFWDRRIVKITKPGKFLQDVSPGKYYFYINKEKKTLYIG 120
           EYLDLKDIIGRVKDIEENYECVFWDRRIVKITKPGKFLQDVSPGKYYFYINKEKKTLYIG
Sbjct: 61  EYLDLKDIIGRVKDIEENYECVFWDRRIVKITKPGKFLQDVSPGKYYFYINKEKKTLYIG 120

Query: 121 TQEPLLALTFRPAKRWERALFYFT 144
           TQEPLLALTFRPAKRWERALFYFT
Sbjct: 121 TQEPLLALTFRPAKRWERALFYFT 144


>pir||B71190 hypothetical protein PH1794 - Pyrococcus horikoshii
           >gi|3258230|dbj|BAA30913.1| (AP000007) 158aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 158
           
 Score =  251 bits (635), Expect = 2e-66
 Identities = 120/144 (83%), Positives = 135/144 (93%)

Query: 1   MLLTNHAKERIAKRLAKRKKIDRIYSALFSFLKNSIRIEVEGTILFTDGSKTLVATRLNG 60
           MLLT HAKERIAKRLAK++KID+IYSALFSFLKNSIRIE+EGTI FTDGSKTLVAT+L+G
Sbjct: 15  MLLTKHAKERIAKRLAKKRKIDKIYSALFSFLKNSIRIEIEGTIFFTDGSKTLVATKLDG 74

Query: 61  EYLDLKDIIGRVKDIEENYECVFWDRRIVKITKPGKFLQDVSPGKYYFYINKEKKTLYIG 120
           + LDL+DII RV+ IEE+YECVFWD++IVKITKP KFLQ+V PGKYYFYINKEKK LYIG
Sbjct: 75  KLLDLEDIIRRVRGIEESYECVFWDKKIVKITKPRKFLQEVPPGKYYFYINKEKKVLYIG 134

Query: 121 TQEPLLALTFRPAKRWERALFYFT 144
           + EPLLALTFRPAKRWERALFYF+
Sbjct: 135 SHEPLLALTFRPAKRWERALFYFS 158


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.142    0.414 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53347932
Number of Sequences: 2977
Number of extensions: 2132655
Number of successful extensions: 4769
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4767
Number of HSP's gapped (non-prelim): 2
length of query: 144
length of database: 189,106,746
effective HSP length: 51
effective length of query: 93
effective length of database: 158,583,909
effective search space: 14748303537
effective search space used: 14748303537
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 161 (67.1 bits)