BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0236 350952 351335 128 !not a gene!
         (128 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71190 hypothetical protein PH1799 - Pyrococcus horikoshii ...   165  2e-40

>pir||G71190 hypothetical protein PH1799 - Pyrococcus horikoshii
           >gi|3258235|dbj|BAA30918.1| (AP000007) 117aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 117
           
 Score =  165 bits (413), Expect = 2e-40
 Identities = 88/116 (75%), Positives = 96/116 (81%)

Query: 12  ITVSPSANLIAFSILGSYSMTSMTGVPTESLTFFGFILLSGRNVSLPSLFLLRNSIAFSA 71
           +TVSP A L AFSILGSYSMT  TG+PT   T   FILLSGR V+LPSLFL +NSIAFSA
Sbjct: 1   MTVSPRAKLTAFSILGSYSMTLTTGIPTSPFTCRAFILLSGRKVNLPSLFLFKNSIAFSA 60

Query: 72  TISFSTTTLSALFPRATSTAIEYISSFTLINSNKVPYIPLIPDLLSSSTALLTLTS 127
           TIS STTTLSAL P+ATSTA+EY SS TLINS+KVPY+P IPDLLSSSTALL L S
Sbjct: 61  TISSSTTTLSALLPKATSTAMEYFSSLTLINSSKVPYMPGIPDLLSSSTALLLLVS 116


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.130    0.344 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37929831
Number of Sequences: 2977
Number of extensions: 1244145
Number of successful extensions: 4763
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4762
Number of HSP's gapped (non-prelim): 1
length of query: 128
length of database: 189,106,746
effective HSP length: 61
effective length of query: 67
effective length of database: 152,599,039
effective search space: 10224135613
effective search space used: 10224135613
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 160 (66.7 bits)