BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0239 (PAB0239) DE:Hypothetical protein
         (109 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75150 hypothetical protein PAB0239 - Pyrococcus abyssi (st...   207  3e-53
pir||A71191 hypothetical protein PH1801 - Pyrococcus horikoshii ...   183  6e-46
gb|AAC44839.1| (U52961) holin-like protein LrgA [Staphylococcus ...    71  4e-12

>pir||C75150 hypothetical protein PAB0239 - Pyrococcus abyssi (strain Orsay)
           >gi|5457792|emb|CAB49282.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 109
           
 Score =  207 bits (521), Expect = 3e-53
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   MSRGLAIIFGFLFLGELIESLGVPVPGSVLGMVLLTLALISGIVKLGDVEKEAEFLVKNM 60
           MSRGLAIIFGFLFLGELIESLGVPVPGSVLGMVLLTLALISGIVKLGDVEKEAEFLVKNM
Sbjct: 1   MSRGLAIIFGFLFLGELIESLGVPVPGSVLGMVLLTLALISGIVKLGDVEKEAEFLVKNM 60

Query: 61  SVMFIPPGVGIILYTGMLKENAIAITVGLVLSFIITLFVTAKTVEVLRK 109
           SVMFIPPGVGIILYTGMLKENAIAITVGLVLSFIITLFVTAKTVEVLRK
Sbjct: 61  SVMFIPPGVGIILYTGMLKENAIAITVGLVLSFIITLFVTAKTVEVLRK 109


>pir||A71191 hypothetical protein PH1801 - Pyrococcus horikoshii
           >gi|3258237|dbj|BAA30920.1| (AP000007) 109aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 109
           
 Score =  183 bits (459), Expect = 6e-46
 Identities = 93/109 (85%), Positives = 102/109 (93%)

Query: 1   MSRGLAIIFGFLFLGELIESLGVPVPGSVLGMVLLTLALISGIVKLGDVEKEAEFLVKNM 60
           M RGLAIIFGFLFLGE+IESLG+PVPGSVLGMVLLTLALI  +VKL DVE+EAEFLVKNM
Sbjct: 1   MYRGLAIIFGFLFLGEIIESLGIPVPGSVLGMVLLTLALIFKVVKLEDVEREAEFLVKNM 60

Query: 61  SVMFIPPGVGIILYTGMLKENAIAITVGLVLSFIITLFVTAKTVEVLRK 109
           S+MFIPPGVGI+LYTG+LKENA+AI   LV+SFIITLFVTAKTVEVLRK
Sbjct: 61  SIMFIPPGVGIVLYTGILKENALAIATTLVISFIITLFVTAKTVEVLRK 109


>gb|AAC44839.1| (U52961) holin-like protein LrgA [Staphylococcus aureus]
           Length = 147
           
 Score = 71.0 bits (171), Expect = 4e-12
 Identities = 34/99 (34%), Positives = 62/99 (62%), Gaps = 1/99 (1%)

Query: 12  LFLGELIES-LGVPVPGSVLGMVLLTLALISGIVKLGDVEKEAEFLVKNMSVMFIPPGVG 70
           LF+ ++IES + +P+P SV+G+VLL + L +G VKLG+VEK    L  N+ ++F+P G+ 
Sbjct: 26  LFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGIS 85

Query: 71  IILYTGMLKENAIAITVGLVLSFIITLFVTAKTVEVLRK 109
           ++   G++ +    I   +++S I+ L  T    +++ K
Sbjct: 86  VVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMK 124


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.148    0.402 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34710389
Number of Sequences: 2977
Number of extensions: 1235224
Number of successful extensions: 6187
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6185
Number of HSP's gapped (non-prelim): 3
length of query: 109
length of database: 189,106,746
effective HSP length: 52
effective length of query: 57
effective length of database: 157,985,422
effective search space: 9005169054
effective search space used: 9005169054
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 159 (66.3 bits)