BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0240 (PAB0240) DE:Hypothetical protein
(224 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75150 hypothetical protein PAB0240 - Pyrococcus abyssi (st... 427 e-119
pir||B71191 hypothetical protein PH1802 - Pyrococcus horikoshii ... 385 e-106
sp|P33373|YOHK_ECOLI HYPOTHETICAL 24.5 KD PROTEIN IN PBPG-CDD IN... 160 2e-38
pir||B83144 conserved hypothetical protein PA4013 [imported] - P... 159 3e-38
dbj|BAB06987.1| (AP001518) unknown conserved protein [Bacillus h... 155 4e-37
pir||C82117 conserved hypothetical protein VC2100 [imported] - V... 148 5e-35
pir||D69983 conserved hypothetical protein ysbB - Bacillus subti... 146 1e-34
sp|P39590|YWBG_BACSU HYPOTHETICAL 25.8 KD PROTEIN IN EPR-GALK IN... 146 2e-34
gb|AAA60505.1| (U00007) yohK [Escherichia coli] >gi|744181|prf||... 145 6e-34
pir||B81017 conserved hypothetical protein NMB2004 [imported] - ... 141 9e-33
pir||G81960 hypothetical inner membrane protein NMA0436 [importe... 141 9e-33
emb|CAB98698.1| (AL390114) probable hypothetical 23.9 Kd protein... 126 2e-28
sp|P45146|YOHK_HAEIN HYPOTHETICAL PROTEIN HI1298 >gi|1074723|pir... 120 1e-26
pir||H82226 conserved hypothetical protein VC1232 [imported] - V... 120 1e-26
pir||E83216 conserved hypothetical protein PA3431 [imported] - P... 118 4e-26
gb|AAC44840.1| (U52961) LrgB [Staphylococcus aureus] 115 4e-25
pir||G75394 conserved hypothetical protein - Deinococcus radiodu... 111 5e-24
sp|P42102|YXAC_BACSU HYPOTHETICAL 32.8 KDA PROTEIN IN GNTR-HTPG ... 108 5e-23
gb|AAG12840.1|AC074309_12 (AC074309) unknown protein [Arabidopsi... 98 1e-19
dbj|BAA21582.1| (AB005554) see SWISS_PROT ACC#: P42102 [Bacillus... 78 8e-14
>pir||D75150 hypothetical protein PAB0240 - Pyrococcus abyssi (strain Orsay)
>gi|5457793|emb|CAB49283.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 224
Score = 427 bits (1087), Expect = e-119
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MSTFGAFLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVIS 60
MSTFGAFLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVIS
Sbjct: 1 MSTFGAFLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVIS 60
Query: 61 FFLGPAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSF 120
FFLGPAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSF
Sbjct: 61 FFLGPAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSF 120
Query: 121 APKSVTTAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGV 180
APKSVTTAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGV
Sbjct: 121 APKSVTTAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGV 180
Query: 181 SSHGLGTARIITEDELAGAISGLGMALNGVFTAFLLPALIEVIV 224
SSHGLGTARIITEDELAGAISGLGMALNGVFTAFLLPALIEVIV
Sbjct: 181 SSHGLGTARIITEDELAGAISGLGMALNGVFTAFLLPALIEVIV 224
>pir||B71191 hypothetical protein PH1802 - Pyrococcus horikoshii
>gi|3258238|dbj|BAA30921.1| (AP000007) 224aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 224
Score = 385 bits (979), Expect = e-106
Identities = 192/224 (85%), Positives = 212/224 (93%)
Query: 1 MSTFGAFLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVIS 60
M TFGAF+T+ALYAF+SYLYSRK+NPFLNPVLLSI++IG+ILK GISYE YM SARVIS
Sbjct: 1 MKTFGAFITIALYAFFSYLYSRKRNPFLNPVLLSILTIGVILKAFGISYESYMESARVIS 60
Query: 61 FFLGPAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSF 120
FFLGPAVVSLAIPLYKQ +IVKEYSKEIT G+IVGG+TAIFS + +LKAFHAPE+LQRSF
Sbjct: 61 FFLGPAVVSLAIPLYKQAKIVKEYSKEITIGIIVGGVTAIFSTILMLKAFHAPEILQRSF 120
Query: 121 APKSVTTAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGV 180
APKSVTTAIAMG+SEKI GIPQLTAVLVILTGILGNAFAPELL++FKV+DRVARGL TGV
Sbjct: 121 APKSVTTAIAMGISEKIRGIPQLTAVLVILTGILGNAFAPELLDLFKVKDRVARGLGTGV 180
Query: 181 SSHGLGTARIITEDELAGAISGLGMALNGVFTAFLLPALIEVIV 224
SSHGLGTARII EDELAGA+SGLGMALNG+FTAF+LPALIEVIV
Sbjct: 181 SSHGLGTARIILEDELAGAVSGLGMALNGIFTAFILPALIEVIV 224
>sp|P33373|YOHK_ECOLI HYPOTHETICAL 24.5 KD PROTEIN IN PBPG-CDD INTERGENIC REGION
>gi|7429298|pir||E64982 yohK protein - Escherichia coli
(strain K-12) >gi|1788464|gb|AAC75203.1| (AE000303)
putative seritonin transporter [Escherichia coli K12]
Length = 231
Score = 160 bits (400), Expect = 2e-38
Identities = 89/217 (41%), Positives = 125/217 (57%)
Query: 8 LTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISFFLGPAV 67
LTL ++ L +R K P LNP+L+++V I L + GISY+ Y + + V++ L PAV
Sbjct: 11 LTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPFLMLTGISYDSYFKGSEVLNDLLQPAV 70
Query: 68 VSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPKSVTT 127
V+LA PLY+Q+ ++ K I +G + A+ + + A + S PKSVTT
Sbjct: 71 VALAYPLYEQLHQIRARWKSIITICFIGSVVAMVTGTSVALLMGASPEIAASILPKSVTT 130
Query: 128 AIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSSHGLGT 187
IAM V IGGIP ++AV VI GILG F LLN ++R + ARGLA G +SH LGT
Sbjct: 131 PIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAMRIRTKAARGLAMGTASHALGT 190
Query: 188 ARIITEDELAGAISGLGMALNGVFTAFLLPALIEVIV 224
AR D GA S L + L G+ T+ + P L +I+
Sbjct: 191 ARCAELDYQEGAFSSLALVLCGIITSLIAPFLFPIIL 227
>pir||B83144 conserved hypothetical protein PA4013 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950206|gb|AAG07400.1|AE004818_6 (AE004818)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 236
Score = 159 bits (398), Expect = 3e-38
Identities = 86/220 (39%), Positives = 131/220 (59%)
Query: 4 FGAFLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISFFL 63
FG +TL Y Y R + FL PVL+S++ + +L + GI Y++Y SA+V++ L
Sbjct: 16 FGVGVTLGAYQLALAAYERTRWVFLQPVLVSMLVVIGVLLLCGIDYDEYSASAKVLTILL 75
Query: 64 GPAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPK 123
GPA V+LA+PL+ +R +++ ++V G A + F A + S APK
Sbjct: 76 GPATVALAVPLFLNLRRIRQLFWPTLLTLVVAGTLATVLGIAFGWLFGAEPRMLMSMAPK 135
Query: 124 SVTTAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSSH 183
SVT+ IAM V+ +IGG+ L AV V++TG+LG PELL+ VR A+G+A G+++H
Sbjct: 136 SVTSPIAMLVASQIGGVAALAAVFVLITGVLGAILGPELLSAIGVRHPAAQGMALGMTAH 195
Query: 184 GLGTARIITEDELAGAISGLGMALNGVFTAFLLPALIEVI 223
+GT+R + E E GA + L M+L GV TA LLP + ++
Sbjct: 196 AVGTSRALQEGEECGAFAALAMSLMGVATAVLLPLAVALV 235
>dbj|BAB06987.1| (AP001518) unknown conserved protein [Bacillus halodurans]
Length = 227
Score = 155 bits (388), Expect = 4e-37
Identities = 82/218 (37%), Positives = 126/218 (57%)
Query: 2 STFGAFLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISF 61
S+FG LT+ +Y L+ + NP P+L++ I +L + ISY+ Y SA+ I
Sbjct: 4 SSFGIILTVIIYFLTVKLHKKVNNPLTLPILVATGCIVALLLLTDISYKTYYSSAKWIEH 63
Query: 62 FLGPAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFA 121
LGPAVV+LA PLYKQ + +K Y IT G+ +G + + S V + K E L S A
Sbjct: 64 LLGPAVVALAFPLYKQFKRLKSYFVPITIGIFIGAIVGVGSGVLMAKLLGFDEQLIASVA 123
Query: 122 PKSVTTAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVS 181
PKS+TT +AM V++ +GGIP + A+ V++ GI G L + + +A+G++ G +
Sbjct: 124 PKSITTPVAMEVAQSLGGIPPIAALFVMVAGIGGAVLCTVLSKISGIHHHIAKGVSIGTA 183
Query: 182 SHGLGTARIITEDELAGAISGLGMALNGVFTAFLLPAL 219
SH +GTA+ + + GA S L M+++ + A LLP L
Sbjct: 184 SHAIGTAKAMEDHPQEGAASTLAMSISAMLVAGLLPLL 221
>pir||C82117 conserved hypothetical protein VC2100 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656650|gb|AAF95246.1|
(AE004284) conserved hypothetical protein [Vibrio
cholerae]
Length = 229
Score = 148 bits (370), Expect = 5e-35
Identities = 76/217 (35%), Positives = 127/217 (58%)
Query: 1 MSTFGAFLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVIS 60
+S F LTL Y +LY RK++ L P+LL+ + + I++ + I Y+ YM A +
Sbjct: 6 LSLFCFLLTLLFYYASKFLYRRKRSLLLMPLLLAPLLLVIVVMMFHIPYQAYMADAHWLL 65
Query: 61 FFLGPAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSF 120
+ LGPA V+ A+P+Y +++++ ++ GV+V L AI S V + + + P++LQRS
Sbjct: 66 WLLGPATVAFAVPVYDNRALLRQHWLSLSVGVVVSVLVAISSTVLLARWLNLPDLLQRSL 125
Query: 121 APKSVTTAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGV 180
A +S+TT A+ ++ IGG LTA+ V+LTG++G A +L + +R R+ +G + G
Sbjct: 126 AMRSITTPFAVEATKSIGGQSDLTALFVVLTGVIGMAVGEIILTVLSIRSRLGKGASLGA 185
Query: 181 SSHGLGTARIITEDELAGAISGLGMALNGVFTAFLLP 217
S+HG GTA+ G +S + M L G+ T + P
Sbjct: 186 SAHGAGTAKAYQIGNSEGVVSSVVMMLAGMVTVVIAP 222
>pir||D69983 conserved hypothetical protein ysbB - Bacillus subtilis
>gi|1770004|emb|CAA99613.1| (Z75208) hypothetical
protein [Bacillus subtilis] >gi|2635355|emb|CAB14850.1|
(Z99118) similar to hypothetical proteins [Bacillus
subtilis]
Length = 231
Score = 146 bits (366), Expect = 1e-34
Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 1/221 (0%)
Query: 4 FGAFLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGI-ILKILGISYEDYMRSARVISFF 62
FG ++LA + ++L+ + K FL L + +GI LKI G SY DY +I FF
Sbjct: 9 FGIVVSLAAFGIGTFLFKKTKGFFLFTPLFVAMVLGIAFLKIGGFSYADYNNGGEIIKFF 68
Query: 63 LGPAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAP 122
L PA ++ AIPLYKQ +K+Y +I A +I G + ++ + K H + +S P
Sbjct: 69 LEPATIAFAIPLYKQRDKLKKYWWQIMASIIAGSICSVTIVYLLAKGIHLDSAVMKSMLP 128
Query: 123 KSVTTAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSS 182
++ TTAIA+ +S+ IGGI +TA VI ++ A L +FKV++ +++GLA G S
Sbjct: 129 QAATTAIALPLSKGIGGISDITAFAVIFNAVIVYALGALFLKVFKVKNPISKGLALGTSG 188
Query: 183 HGLGTARIITEDELAGAISGLGMALNGVFTAFLLPALIEVI 223
H LG A I E+ A++ + + + GV T ++P +++I
Sbjct: 189 HALGVAVGIEMGEVEAAMASIAVVVVGVVTVLVIPVFVQLI 229
>sp|P39590|YWBG_BACSU HYPOTHETICAL 25.8 KD PROTEIN IN EPR-GALK INTERGENIC REGION
>gi|2126967|pir||S39677 conserved hypothetical protein
ywbG - Bacillus subtilis >gi|580868|emb|CAA51578.1|
(X73124) ipa-22r [Bacillus subtilis]
>gi|2636368|emb|CAB15859.1| (Z99123) alternate gene
name: ipa-22r~similar to hypothetical proteins [Bacillus
subtilis]
Length = 241
Score = 146 bits (365), Expect = 2e-34
Identities = 78/211 (36%), Positives = 119/211 (55%)
Query: 7 FLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISFFLGPA 66
FLT+ +Y +Y R + +P+L++ + +L ++ + YE Y +++ L PA
Sbjct: 9 FLTVLVYLGAKKVYQRFPRVYTSPLLVTPAVLVGLLLLVNVPYESYNLGGGLLTDMLQPA 68
Query: 67 VVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPKSVT 126
V+ AIPLYK ++K+Y+ EI V VG AI S I K H L S P+SVT
Sbjct: 69 TVAFAIPLYKYFPVLKKYAVEIILNVAVGSCIAIISTALIAKWLHLGTGLIDSLVPRSVT 128
Query: 127 TAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSSHGLG 186
T IA+ VSE IGG+P +TAV VILT +LG P ++ F++ + +ARG+ G S+HG G
Sbjct: 129 TPIAVHVSEMIGGMPAVTAVFVILTALLGTVIGPMVIRYFRIDNEIARGVLLGTSAHGAG 188
Query: 187 TARIITEDELAGAISGLGMALNGVFTAFLLP 217
T++ ++G IS + M L + T + P
Sbjct: 189 TSKAFELSSVSGTISSVSMILAAIMTLWPAP 219
>gb|AAA60505.1| (U00007) yohK [Escherichia coli] >gi|744181|prf||2014253AQ yohK
gene [Escherichia coli]
Length = 248
Score = 145 bits (361), Expect = 6e-34
Identities = 82/194 (42%), Positives = 112/194 (57%)
Query: 8 LTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISFFLGPAV 67
LTL ++ L +R K P LNP+L+++V I L + GISY+ Y + + V++ L PAV
Sbjct: 11 LTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPFLMLTGISYDSYFKGSEVLNDLLQPAV 70
Query: 68 VSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPKSVTT 127
V+LA PLY+Q+ ++ K I +G + A+ + + A + S PKSVTT
Sbjct: 71 VALAYPLYEQLHQIRARWKSIITICFIGSVVAMVTGTSVALLMGASPEIAASILPKSVTT 130
Query: 128 AIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSSHGLGT 187
IAM V IGGIP ++AV VI GILG F LLN ++R + ARGLA G +SH LGT
Sbjct: 131 PIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAMRIRTKAARGLAMGTASHALGT 190
Query: 188 ARIITEDELAGAIS 201
AR D GA S
Sbjct: 191 ARCAELDYQEGAFS 204
>pir||B81017 conserved hypothetical protein NMB2004 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227268|gb|AAF42331.1| (AE002550) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 230
Score = 141 bits (351), Expect = 9e-33
Identities = 82/217 (37%), Positives = 120/217 (54%), Gaps = 1/217 (0%)
Query: 7 FLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISFFLGPA 66
FLTLA+YA + +R N F NPVL+S + + LKILGI Y Y +A+ I F+L PA
Sbjct: 13 FLTLAVYALAIIVRTRTGNIFCNPVLVSTIVLIAYLKILGIDYAVYHNAAQFIDFWLKPA 72
Query: 67 VVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPKSVT 126
VV LA+PLY+ R + + + G +T I + ++ K A + S A KSVT
Sbjct: 73 VVVLAVPLYQNRRKIFNQWLPVIVSQLAGSVTGIVTGMYFAKWLGAEREVVLSLASKSVT 132
Query: 127 TAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSSHGLG 186
IA+ ++ IGGIP +TA VI+ G++G ++L V + G++ G +SH +G
Sbjct: 133 NPIAIEITRSIGGIPAITAATVIIAGLVGQIAGYKMLKNTVVMPS-SVGMSLGTASHAMG 191
Query: 187 TARIITEDELAGAISGLGMALNGVFTAFLLPALIEVI 223
A + A +GLG+ NGV TA + P LI V+
Sbjct: 192 IAASLERSRRMAAYAGLGLTFNGVLTALIAPLLIPVL 228
>pir||G81960 hypothetical inner membrane protein NMA0436 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7379186|emb|CAB83735.1| (AL162753) hypothetical
inner membrane protein [Neisseria meningitidis Z2491]
Length = 230
Score = 141 bits (351), Expect = 9e-33
Identities = 82/217 (37%), Positives = 120/217 (54%), Gaps = 1/217 (0%)
Query: 7 FLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISFFLGPA 66
FLTLA+YA + +R N F NPVL+S + + LKILGI Y Y +A+ I F+L PA
Sbjct: 13 FLTLAVYALAIIVRTRTGNIFCNPVLVSTIVLIAYLKILGIDYAVYHNAAQFIDFWLKPA 72
Query: 67 VVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPKSVT 126
VV LA+PLY+ R + + + G +T I + ++ K A + S A KSVT
Sbjct: 73 VVVLAVPLYQNRRKIFNQWLPVIVSQLAGSVTGIVTGMYFAKWLGAEREVVLSLASKSVT 132
Query: 127 TAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSSHGLG 186
IA+ ++ IGGIP +TA VI+ G++G ++L V + G++ G +SH +G
Sbjct: 133 NPIAIEITRSIGGIPAITAATVIIAGLVGQIAGYKMLKNTVVMPS-SVGMSLGTASHAMG 191
Query: 187 TARIITEDELAGAISGLGMALNGVFTAFLLPALIEVI 223
A + A +GLG+ NGV TA + P LI V+
Sbjct: 192 IAASLERSRRMAAYAGLGLTFNGVLTALIAPLLIPVL 228
>emb|CAB98698.1| (AL390114) probable hypothetical 23.9 Kd protein [Leishmania major]
Length = 155
Score = 126 bits (314), Expect = 2e-28
Identities = 68/152 (44%), Positives = 97/152 (63%)
Query: 56 ARVISFFLGPAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEV 115
A+ + L PA V+LA+PLY+Q+ ++ + + G++ L A+ SAV I A
Sbjct: 4 AQXVHXXLXPATVALAVPLYQQLPKLRAHVLPLLCGLLAXSLVAVVSAVGIAWLLGASPX 63
Query: 116 LQRSFAPKSVTTAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARG 175
+ RS APKSVT IAMGV+EKI G+P LTAVLV+ GI+ A ++LN+ +RD RG
Sbjct: 64 VVRSLAPKSVTIPIAMGVAEKIXGLPSLTAVLVMGXGIIXAISATKILNLLGMRDYSVRG 123
Query: 176 LATGVSSHGLGTARIITEDELAGAISGLGMAL 207
ATG+++HG+GTAR ++ AGA + LGM L
Sbjct: 124 FATGLAAHGIGTARAFQVNQEAGAFAALGMGL 155
>sp|P45146|YOHK_HAEIN HYPOTHETICAL PROTEIN HI1298 >gi|1074723|pir||D64170 hypothetical
protein HI1298 - Haemophilus influenzae (strain Rd KW20)
>gi|1574756|gb|AAC22944.1| (U32809) conserved
hypothetical transmembrane protein [Haemophilus
influenzae Rd]
Length = 231
Score = 120 bits (299), Expect = 1e-26
Identities = 70/217 (32%), Positives = 118/217 (54%)
Query: 7 FLTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISFFLGPA 66
FLT+ + + R K+ N +L+++ + IL I I Y+DYM I+ LG +
Sbjct: 11 FLTIFGFWLALQISKRWKSMIFNTFVLTVLILAAILVIGKIPYDDYMAGNAPINNLLGLS 70
Query: 67 VVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPKSVT 126
+V+LA+PLY+Q+R + K I + V++ A+ S + + + + PKS+T
Sbjct: 71 IVALALPLYEQLRQIARQWKIILSTVVIASFLAMLSGGLLALLLGSTPEMVATVLPKSIT 130
Query: 127 TAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSSHGLG 186
IAM VS +GGIP +TAV V++ G+ G+ F +L V+ + A GL+ G SH LG
Sbjct: 131 MPIAMEVSRHLGGIPAVTAVGVVVAGLQGSIFGYLVLKKLGVKHQEAIGLSVGSVSHALG 190
Query: 187 TARIITEDELAGAISGLGMALNGVFTAFLLPALIEVI 223
T + + AG+ S + + L G+ ++ L P + ++I
Sbjct: 191 TVSCMETNPTAGSYSSISLVLCGIISSILAPFVFKLI 227
>pir||H82226 conserved hypothetical protein VC1232 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655713|gb|AAF94391.1|
(AE004202) conserved hypothetical protein [Vibrio
cholerae]
Length = 224
Score = 120 bits (299), Expect = 1e-26
Identities = 70/212 (33%), Positives = 114/212 (53%)
Query: 8 LTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISFFLGPAV 67
+TL ++ ++ + P NP+L+SI + +L L + +E Y + +S+ L PAV
Sbjct: 5 ITLGVFFVARWVAQKCTTPLANPLLISIGILIPLLTYLKVPFETYYADNQWLSYLLQPAV 64
Query: 68 VSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPKSVTT 127
V+LA PLY+Q+ ++ + I VG + ++ +A I + A L + KSVTT
Sbjct: 65 VALAYPLYEQLPQIRANWRIIALACGVGSVMSMITASLIAVSMGADIELIAALMGKSVTT 124
Query: 128 AIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSSHGLGT 187
IAM V+ ++GG P + A+LV+L G+ G A + + + +A+GL G SH LGT
Sbjct: 125 PIAMEVARQLGGEPAIAAILVLLVGLFGAILAYPIYKLLNITHPIAKGLTMGTVSHALGT 184
Query: 188 ARIITEDELAGAISGLGMALNGVFTAFLLPAL 219
A +D A S L + + GV T+ L P+L
Sbjct: 185 ATCAEKDPRDAAFSSLALVVCGVITSVLAPSL 216
>pir||E83216 conserved hypothetical protein PA3431 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949571|gb|AAG06819.1|AE004764_5 (AE004764)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 228
Score = 118 bits (294), Expect = 4e-26
Identities = 72/213 (33%), Positives = 111/213 (51%), Gaps = 8/213 (3%)
Query: 9 TLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGIS----YEDYMRSARVISFFLG 64
T+ Y LY R K +L+P IV + ++L L I Y DY R + LG
Sbjct: 14 TVGGYLLSRQLYRRVKWYWLSP----IVFVPVLLYALAIPTHTRYADYARDTNWLVALLG 69
Query: 65 PAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPKS 124
PA V+ AIP+++Q ++ + + AG+ G AI S+ + +A + S P+S
Sbjct: 70 PATVAFAIPIWQQRELLMRHWPALLAGMFAGTAVAIGSSWALAQALALDGQVTLSLLPRS 129
Query: 125 VTTAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSSHG 184
+TT AM +S +GG+P+LTA V++TG+ G LL + ++R +ARG GV +HG
Sbjct: 130 ITTPFAMEMSHDLGGVPELTAAFVMITGVFGAVIGGTLLRVLRLRTPLARGALFGVGAHG 189
Query: 185 LGTARIITEDELAGAISGLGMALNGVFTAFLLP 217
GT+R G+ +GL M L G+F + P
Sbjct: 190 AGTSRAYEFGGEEGSAAGLLMVLTGLFNLLVAP 222
>gb|AAC44840.1| (U52961) LrgB [Staphylococcus aureus]
Length = 233
Score = 115 bits (286), Expect = 4e-25
Identities = 68/220 (30%), Positives = 116/220 (51%), Gaps = 1/220 (0%)
Query: 4 FGAFLTLALYAFYSYLYSRKKNPFL-NPVLLSIVSIGIILKILGISYEDYMRSARVISFF 62
FG L++ + + L+ + FL P+ +S+V L + GI Y+ Y +I FF
Sbjct: 12 FGILLSVIPFFLATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFF 71
Query: 63 LGPAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAP 122
L PA + AIPLYK+ ++ ++ I G+ +G + A+ + K + S P
Sbjct: 72 LEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDVILSMLP 131
Query: 123 KSVTTAIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSS 182
++ TTAIA+ VS IGGI +LT++ VIL G++ A + L +F++ + +ARGLA G S
Sbjct: 132 QAATTAIALPVSAGIGGIKELTSLAVILNGVIIYALGNKFLKLFRITNPIARGLALGTSG 191
Query: 183 HGLGTARIITEDELAGAISGLGMALNGVFTAFLLPALIEV 222
H LG A + +++ + + L GV ++P + +
Sbjct: 192 HTLGVAPAKELGPVEESMASIALVLVGVVVVAVVPVFVAI 231
>pir||G75394 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6459207|gb|AAF11017.1|AE001989_5 (AE001989)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 223
Score = 111 bits (276), Expect = 5e-24
Identities = 62/212 (29%), Positives = 108/212 (50%)
Query: 8 LTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISFFLGPAV 67
LTL + L R ++P NP L++ + + L + +Y Y + ++ L PAV
Sbjct: 6 LTLLAFVAGMLLQLRVRSPLANPTLVATLVVLAALLLSRTAYPYYHAQVQPLTELLAPAV 65
Query: 68 VSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPKSVTT 127
V+LA+PLY+Q ++ + + G ++G + + + +A H +RS + T+
Sbjct: 66 VALAVPLYQQRALLARQWQALLVGGMLGTAVGMGTDTLLARALHLGHAAERSLMTATATS 125
Query: 128 AIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGLATGVSSHGLGT 187
+ + +++ G +L A L +L+G++G P LL VR +ARG+A G +HG+GT
Sbjct: 126 PVTVQLAQFTGAPAELAATLAVLSGLVGALILPPLLTRLGVRHPLARGIAIGSVAHGVGT 185
Query: 188 ARIITEDELAGAISGLGMALNGVFTAFLLPAL 219
AR E + GA S +GM L V ++ L
Sbjct: 186 ARAREEGSITGAASSIGMGLGAVLVTLVVALL 217
>sp|P42102|YXAC_BACSU HYPOTHETICAL 32.8 KDA PROTEIN IN GNTR-HTPG INTERGENIC REGION
>gi|7474778|pir||C70071 conserved hypothetical protein
yxaC - Bacillus subtilis >gi|2636549|emb|CAB16039.1|
(Z99124) similar to hypothetical proteins [Bacillus
subtilis]
Length = 301
Score = 108 bits (268), Expect = 5e-23
Identities = 61/156 (39%), Positives = 86/156 (55%)
Query: 8 LTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISFFLGPAV 67
LT+A Y LY R PFL PVL + + I L + +SYE YM + I+ LGPAV
Sbjct: 138 LTVAAYLAMVKLYKRFPLPFLIPVLTTTILIVAALMMFHVSYEGYMIGGKWINSLLGPAV 197
Query: 68 VSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPKSVTT 127
V+LA PLYKQ I+ ++ I GV+VG + S + +AF L S PKS+TT
Sbjct: 198 VALAYPLYKQWHIIVKHCVPILGGVLVGLCMGMISGLIFAEAFGIDHDLLLSILPKSITT 257
Query: 128 AIAMGVSEKIGGIPQLTAVLVILTGILGNAFAPELL 163
+A+ ++ +GG+P +T V V++ G G P L
Sbjct: 258 PVAIQIAAGLGGVPSMTVVFVMIAGFSGVILGPLFL 293
>gb|AAG12840.1|AC074309_12 (AC074309) unknown protein [Arabidopsis thaliana]
>gi|10801363|gb|AAG23435.1|AC084165_1 (AC084165) unknown
protein [Arabidopsis thaliana]
Length = 512
Score = 97.5 bits (239), Expect = 1e-19
Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Query: 58 VISFFLGPAVVSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQ 117
++ FLG ++S A ++KQ ++VK ++ EI VIV + +++S + + L
Sbjct: 339 ILMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTSVIVSTVFSLYSTALVGRLVGLEPSLT 398
Query: 118 RSFAPKSVTTAIAMGVSEKIGGI-PQLTAVLVILTGILGNAFAPELLNMFKVRDRVARGL 176
S P+ +T A+A+ + G LTA +V++TG++G F +L+ ++RD +ARG+
Sbjct: 399 VSILPRCITVALALSIVSLFEGTNSSLTAAVVVVTGLIGANFVQVVLDKLRLRDPIARGI 458
Query: 177 ATGVSSHGLGTARIITEDELAGAISGLGMALNGVFTAFL 215
AT S+HGLGTA + ++ A + AL G+F + L
Sbjct: 459 ATASSAHGLGTAALSAKEPEALPFCAIAYALTGIFGSLL 497
>dbj|BAA21582.1| (AB005554) see SWISS_PROT ACC#: P42102 [Bacillus subtilis]
Length = 253
Score = 78.0 bits (189), Expect = 8e-14
Identities = 47/116 (40%), Positives = 62/116 (52%)
Query: 8 LTLALYAFYSYLYSRKKNPFLNPVLLSIVSIGIILKILGISYEDYMRSARVISFFLGPAV 67
LT+A Y LY R PFL PVL + + I L + +SYE YM + I+ LGPAV
Sbjct: 138 LTVAAYLAMVKLYKRFPLPFLIPVLTTTILIVAALMMFHVSYEGYMIGGKWINSLLGPAV 197
Query: 68 VSLAIPLYKQIRIVKEYSKEITAGVIVGGLTAIFSAVFILKAFHAPEVLQRSFAPK 123
V+LA PLYKQ I+ ++ I GV+VG + S + +AF L S PK
Sbjct: 198 VALAYPLYKQWHIIVKHCVPILGGVLVGLCMGMISGLIFAEAFGIDHDLLLSILPK 253
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.143 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71156736
Number of Sequences: 2977
Number of extensions: 2651649
Number of successful extensions: 10041
Number of sequences better than 1.0e-10: 20
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10016
Number of HSP's gapped (non-prelim): 20
length of query: 224
length of database: 189,106,746
effective HSP length: 56
effective length of query: 168
effective length of database: 155,591,474
effective search space: 26139367632
effective search space used: 26139367632
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)