BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0241 (PAB0241) DE:Hypothetical protein
         (194 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75150 hypothetical protein PAB0241 - Pyrococcus abyssi (st...   383  e-106
pir||C71191 hypothetical protein PH1803 - Pyrococcus horikoshii ...   259  2e-68

>pir||E75150 hypothetical protein PAB0241 - Pyrococcus abyssi (strain Orsay)
           >gi|5457794|emb|CAB49284.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 194
           
 Score =  383 bits (973), Expect = e-106
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MKHEVIALVSLALSFVPPLLSRNFRDWVILLVLAYLLAPSILAKILRVPLSDLGLKKPRG 60
           MKHEVIALVSLALSFVPPLLSRNFRDWVILLVLAYLLAPSILAKILRVPLSDLGLKKPRG
Sbjct: 1   MKHEVIALVSLALSFVPPLLSRNFRDWVILLVLAYLLAPSILAKILRVPLSDLGLKKPRG 60

Query: 61  FKLTLILLGFAFVLSFIGLAFPEMKSYYPRFQYSSVVEFIGYELVFGIIMLAHEALFRGF 120
           FKLTLILLGFAFVLSFIGLAFPEMKSYYPRFQYSSVVEFIGYELVFGIIMLAHEALFRGF
Sbjct: 61  FKLTLILLGFAFVLSFIGLAFPEMKSYYPRFQYSSVVEFIGYELVFGIIMLAHEALFRGF 120

Query: 121 ILFPLARRNKILAILAQDIPYTLLHIGKPSIEVPYAFLAGIVFAIIDLKEESIAPSFIVH 180
           ILFPLARRNKILAILAQDIPYTLLHIGKPSIEVPYAFLAGIVFAIIDLKEESIAPSFIVH
Sbjct: 121 ILFPLARRNKILAILAQDIPYTLLHIGKPSIEVPYAFLAGIVFAIIDLKEESIAPSFIVH 180

Query: 181 WLGSAFFDVLCAFT 194
           WLGSAFFDVLCAFT
Sbjct: 181 WLGSAFFDVLCAFT 194


>pir||C71191 hypothetical protein PH1803 - Pyrococcus horikoshii
           >gi|3258239|dbj|BAA30922.1| (AP000007) 189aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 189
           
 Score =  259 bits (654), Expect = 2e-68
 Identities = 116/189 (61%), Positives = 154/189 (81%)

Query: 6   IALVSLALSFVPPLLSRNFRDWVILLVLAYLLAPSILAKILRVPLSDLGLKKPRGFKLTL 65
           + ++   LSF P L+S + ++WV LL++ Y+L P ++ K L++PL  +G++KP+ FK TL
Sbjct: 1   MTIILAFLSFTPALVSHDLKEWVFLLLVFYVLTPILILKALKIPLQSVGIRKPKSFKSTL 60

Query: 66  ILLGFAFVLSFIGLAFPEMKSYYPRFQYSSVVEFIGYELVFGIIMLAHEALFRGFILFPL 125
           ILLG A VLSFIGL  PEMKSYYPR+ Y   ++FI YE +FGI+ML+HE +FRGF+LFPL
Sbjct: 61  ILLGAAVVLSFIGLLSPEMKSYYPRYPYHGPLDFILYEALFGIVMLSHELMFRGFMLFPL 120

Query: 126 ARRNKILAILAQDIPYTLLHIGKPSIEVPYAFLAGIVFAIIDLKEESIAPSFIVHWLGSA 185
           A+R+ I+AI+AQDIPYT+LH+GKP +E+PYAF+AGIVFAIIDLKEES+ PSF+VHW+GSA
Sbjct: 121 AKRSNIIAIVAQDIPYTILHVGKPFVEIPYAFIAGIVFAIIDLKEESVIPSFLVHWIGSA 180

Query: 186 FFDVLCAFT 194
           FFD LC  T
Sbjct: 181 FFDFLCIIT 189


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.333    0.150    0.448 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67364995
Number of Sequences: 2977
Number of extensions: 2625349
Number of successful extensions: 7180
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7178
Number of HSP's gapped (non-prelim): 2
length of query: 194
length of database: 189,106,746
effective HSP length: 49
effective length of query: 145
effective length of database: 159,780,883
effective search space: 23168228035
effective search space used: 23168228035
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (22.0 bits)
S2: 163 (67.9 bits)