BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0243 (dinF-like) DE:DAMAGE-INDUCIBLE PROTEIN
(463 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75151 damage-inducible protein PAB0243 - Pyrococcus abyssi... 915 0.0
pir||G71191 probable DNA damage-inducible protein - Pyrococcus h... 829 0.0
pir||JC4561 DNA damage-inducible protein homolog - Pyrococcus sp... 568 e-161
pir||E70312 conserved hypothetical protein aq_128 - Aquifex aeol... 263 2e-69
pir||H72331 conserved hypothetical protein - Thermotoga maritima... 223 3e-57
gb|AAG20494.1| (AE005121) DNA damage-inducible protein; Dip1 [Ha... 202 8e-51
pir||C72561 hypothetical protein APE1773 - Aeropyrum pernix (str... 197 3e-49
pir||H71898 hypothetical protein jhp0696 - Helicobacter pylori (... 194 2e-48
pir||G64614 conserved hypothetical integral membrane protein HP0... 193 3e-48
pir||H70158 conserved hypothetical integral membrane protein BB0... 178 9e-44
pir||B75053 dinf related PAB1439 - Pyrococcus abyssi (strain Ors... 170 3e-41
gb|AAG19206.1| (AE005017) Vng0727c [Halobacterium sp. NRC-1] 169 4e-41
dbj|BAA15804.1| (D90837) ORF_ID:o347#5~similar to [SwissProt Acc... 167 2e-40
sp|P76352|YEEO_ECOLI HYPOTHETICAL 60.1 KDA PROTEIN IN AMN-CBL IN... 167 2e-40
pir||E71172 probable damage-inducible protein - Pyrococcus horik... 166 7e-40
pir||E72471 probable DNA-damage-inducible protein APE2414 - Aero... 164 1e-39
pir||C71172 hypothetical protein PH0575 - Pyrococcus horikoshii ... 163 3e-39
pir||JC4562 hypothetical 10.5K protein - Pyrococcus sp >gi|97157... 162 6e-39
pir||A82049 conserved hypothetical protein VC2671 [imported] - V... 158 1e-37
dbj|BAB06655.1| (AP001517) unknown conserved protein [Bacillus h... 156 4e-37
pir||A69905 conserved hypothetical protein yoeA - Bacillus subti... 155 7e-37
pir||C75053 DNA damage-inducible protein. PAB1438 - Pyrococcus a... 151 1e-35
pir||C75474 conserved hypothetical protein - Deinococcus radiodu... 142 9e-33
pir||T36597 hypothetical protein SCH24.32c - Streptomyces coelic... 138 1e-31
dbj|BAB04605.1| (AP001510) unknown conserved protein [Bacillus h... 136 4e-31
pir||H69837 conserved hypothetical protein yisQ - Bacillus subti... 136 7e-31
sp|P54181|YPNP_BACSU HYPOTHETICAL 48.5 KD PROTEIN IN ILVA 3'REGI... 131 1e-29
pir||G72220 conserved hypothetical protein - Thermotoga maritima... 130 4e-29
dbj|BAB05882.1| (AP001514) unknown conserved protein in others [... 129 5e-29
sp|Q58119|Y709_METJA HYPOTHETICAL PROTEIN MJ0709 >gi|2128027|pir... 127 3e-28
pir||B83476 probable transporter PA1361 [imported] - Pseudomonas... 127 4e-28
gb|AAG19201.1| (AE005016) DNA damage-inducible protein; Dip2 [Ha... 126 5e-28
gb|AAG20342.1| (AE005107) DNA damage-inducible protein; DinF [Ha... 125 1e-27
gi|11499066 conserved hypothetical protein [Archaeoglobus fulgid... 123 4e-27
gb|AAG10466.1|AF279106_28 (AF279106) predicted cation efflux pum... 123 5e-27
gb|AAG27731.1|AF312031_1 (AF312031) multi-drug efflux transporte... 122 1e-26
sp|P45272|YDHE_HAEIN HYPOTHETICAL PROTEIN HI1612 >gi|1074865|pir... 121 2e-26
dbj|BAB04579.1| (AP001510) unknown conserved protein [Bacillus h... 121 2e-26
pir||F69906 conserved hypothetical protein yojI - Bacillus subti... 117 2e-25
pir||B81410 probable integral membrane protein Cj0619 [imported]... 116 4e-25
pir||C81156 conserved hypothetical protein NMB0812 [imported] - ... 112 8e-24
sp|Q55364|Y896_SYNY3 HYPOTHETICAL 49.7 KDA PROTEIN SLR0896 >gi|7... 112 1e-23
pir||A82984 hypothetical protein PA5294 [imported] - Pseudomonas... 112 1e-23
pir||D81950 probable transmembrane efflux protein NMA1022 [impor... 110 4e-23
sp|P37340|YDHE_ECOLI HYPOTHETICAL 49.4 KDA PROTEIN IN RIBC-PYKF ... 109 5e-23
dbj|BAB07764.1| (AP001520) unknown conserved protein in others [... 109 5e-23
pir||H82186 probable multidrug resistance protein NorM VC1540 [i... 109 9e-23
pir||G70693 probable dinF protein - Mycobacterium tuberculosis (... 108 1e-22
pir||A64924 probable membrane protein ydhE precursor - Escherich... 107 3e-22
pir||G82392 conserved hypothetical protein VCA0989 [imported] - ... 106 6e-22
sp|P28303|DINF_ECOLI DNA-DAMAGE-INDUCIBLE PROTEIN F >gi|7465839|... 106 8e-22
pir||H75559 conserved hypothetical protein - Deinococcus radiodu... 105 1e-21
pir||E82527 multidrug efflux protein XF2686 [imported] - Xylella... 105 1e-21
dbj|BAA31456.1| (AB010463) NorM [Vibrio parahaemolyticus] 102 7e-21
pir||C69140 conserved hypothetical protein MTH314 - Methanobacte... 101 2e-20
emb|CAA84073.1| (Z34303) DinF protein [Streptococcus pneumoniae] 100 3e-20
gb|AAF26015.1|AC016972_11 (AC016972) hypothetical protein; 49518... 100 4e-20
pir||G82364 DNA-damage-inducible protein F VC0090 [imported] - V... 99 1e-19
pir||E82175 conserved hypothetical protein VC1631 [imported] - V... 96 1e-18
pir||F70172 conserved hypothetical integral membrane protein BB0... 94 3e-18
gi|8922709 hypothetical protein FLJ10847 [Homo sapiens] >gi|7023... 89 8e-17
pir||H81402 probable integral membrane protein Cj0560 [imported]... 89 1e-16
gb|AAF21214.1|AC013483_38 (AC013483) putative integral membrane ... 85 2e-15
prf||1901324A ethionine resistance gene [Saccharomyces cerevisiae] 83 8e-15
pir||E82296 conserved hypothetical protein VC0650 [imported] - V... 82 1e-14
dbj|BAB04869.1| (AP001511) DNA-damage-inducible protein [Bacillu... 82 2e-14
pir||G83043 probable transporter PA4821 [imported] - Pseudomonas... 77 5e-13
gi|6321821 Yhr032wp [Saccharomyces cerevisiae] >gi|731645|sp|P38... 77 5e-13
pir||T02512 hypothetical protein T19C21.18 - Arabidopsis thalian... 75 2e-12
gb|AAD30255.1|AC007296_16 (AC007296) Strong similarity to gi|336... 73 7e-12
gi|11428103 hypothetical protein FLJ10847 [Homo sapiens] 72 1e-11
dbj|BAB02774.1| (AB023036) gb|AAF24840.1~gene_id:MDB19.4~similar... 72 2e-11
>pir||A75151 damage-inducible protein PAB0243 - Pyrococcus abyssi (strain Orsay)
>gi|5457798|emb|CAB49288.1| (AJ248284) DAMAGE-INDUCIBLE
PROTEIN [Pyrococcus abyssi]
Length = 463
Score = 915 bits (2340), Expect = 0.0
Identities = 463/463 (100%), Positives = 463/463 (100%)
Query: 1 MSDIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMA 60
MSDIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMA
Sbjct: 1 MSDIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMA 60
Query: 61 ISTGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEV 120
ISTGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEV
Sbjct: 61 ISTGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEV 120
Query: 121 LEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKF 180
LEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKF
Sbjct: 121 LEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKF 180
Query: 181 GFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTM 240
GFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTM
Sbjct: 181 GFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTM 240
Query: 241 LERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAK 300
LERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAK
Sbjct: 241 LERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAK 300
Query: 301 KPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIV 360
KPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIV
Sbjct: 301 KPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIV 360
Query: 361 GISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFT 420
GISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFT
Sbjct: 361 GISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFT 420
Query: 421 FPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKKIKI 463
FPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKKIKI
Sbjct: 421 FPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKKIKI 463
>pir||G71191 probable DNA damage-inducible protein - Pyrococcus horikoshii
>gi|3258243|dbj|BAA30926.1| (AP000007) 463aa long
hypothetical DNA damage-inducible protein [Pyrococcus
horikoshii]
Length = 463
Score = 829 bits (2118), Expect = 0.0
Identities = 405/463 (87%), Positives = 440/463 (94%)
Query: 1 MSDIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMA 60
MS++R++LW LAWPAIMGNISQTLLNLVDTMIVGHVS+VALGAVGLGGQVSWFMFPIMMA
Sbjct: 1 MSELRRRLWELAWPAIMGNISQTLLNLVDTMIVGHVSAVALGAVGLGGQVSWFMFPIMMA 60
Query: 61 ISTGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEV 120
ISTGTLALVARRVGE N+ EASRI EQSMYIAF+IGIPVMLFG+FLGDEVL+IMGAKGEV
Sbjct: 61 ISTGTLALVARRVGEGNYREASRITEQSMYIAFLIGIPVMLFGIFLGDEVLRIMGAKGEV 120
Query: 121 LEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKF 180
L+IAY+YL++LFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVIN +LDYLLVFGK
Sbjct: 121 LDIAYSYLKILFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINGILDYLLVFGKL 180
Query: 181 GFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTM 240
GFP+LGPVGAAWASGIGI+ +FLVG+YLF+ +KLILKPVL+ LRF+IIEKILRIGTPTM
Sbjct: 181 GFPKLGPVGAAWASGIGISSSFLVGLYLFLAHKLILKPVLEFKLRFNIIEKILRIGTPTM 240
Query: 241 LERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAK 300
LERGLFSFYNFLYVSIVARFG+IALSAHYIGLR+ESIAYMPAFGFSIATSALVGQ LGA+
Sbjct: 241 LERGLFSFYNFLYVSIVARFGEIALSAHYIGLRVESIAYMPAFGFSIATSALVGQKLGAR 300
Query: 301 KPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIV 360
KP+EAE TVKEALKMTT FMS MAF+L+ FPGYLTEPFLSHNDPNY AVKSLAVIYLIIV
Sbjct: 301 KPDEAELTVKEALKMTTAFMSTMAFILVAFPGYLTEPFLSHNDPNYSAVKSLAVIYLIIV 360
Query: 361 GISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFT 420
GISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRI+PAYLLGFGF +P +IG T
Sbjct: 361 GISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRIIPAYLLGFGFTVPSFTIGSLT 420
Query: 421 FPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKKIKI 463
FPGFKF G+GVIAAWIGMSLETF+TAGLFW+VF+RGKWK IKI
Sbjct: 421 FPGFKFEGLGVIAAWIGMSLETFITAGLFWIVFRRGKWKTIKI 463
>pir||JC4561 DNA damage-inducible protein homolog - Pyrococcus sp
>gi|971571|emb|CAA62487.1| (X91006) orf B [Pyrococcus
sp.] >gi|1586540|prf||2204238A dinF-like gene
[Pyrococcus sp.]
Length = 363
Score = 568 bits (1449), Expect = e-161
Identities = 286/363 (78%), Positives = 326/363 (89%), Gaps = 4/363 (1%)
Query: 1 MSDIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLG-GQVSWFMFPIMM 59
MS+IRK+LW LAWPAI GNISQTLLNLVDTMIVGHVS+VALG + G VSWFMFPIMM
Sbjct: 1 MSEIRKRLWKLAWPAIAGNISQTLLNLVDTMIVGHVSAVALGCSWVWEGMVSWFMFPIMM 60
Query: 60 AISTGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGE 119
A+STGTLA+VARRVGE+N++EASR+AEQSMYIAFI+GIPVMLFG+F GD++L+IMGAKGE
Sbjct: 61 AVSTGTLAVVARRVGERNYDEASRVAEQSMYIAFILGIPVMLFGIFFGDDILRIMGAKGE 120
Query: 120 VLEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGK 179
V EIAYAYLRVLFLFYPIRF+GFAFFS+LRGAGDTKTPM LNILMNV+NAVLDYLLVFGK
Sbjct: 121 VFEIAYAYLRVLFLFYPIRFVGFAFFSSLRGAGDTKTPMLLNILMNVVNAVLDYLLVFGK 180
Query: 180 FGFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPT 239
GFPR+GPVGAAWASGIGITIAFLVG+YLFI ++L+LKPVL+L +R+DI+EKILRIGTPT
Sbjct: 181 LGFPRMGPVGAAWASGIGITIAFLVGLYLFIAHRLVLKPVLELRIRWDIVEKILRIGTPT 240
Query: 240 MLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGA 299
MLERGLFSFYNFLY+SIV RFGKIALSAH+IGLR+ESIAYMPAFGFSIATSALVGQ+LGA
Sbjct: 241 MLERGLFSFYNFLYMSIVTRFGKIALSAHHIGLRVESIAYMPAFGFSIATSALVGQSLGA 300
Query: 300 KKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTE--PFLSHNDPNYQAVKSLAVIYL 357
KKPE+ R VKEA+KM+ FMS MAFVL+ FPG PF ++ ++ +LA IYL
Sbjct: 301 KKPEQRGRVVKEAIKMSPAFMSVMAFVLVAFPGMPRRALPFKVRSN-TMRSSNNLASIYL 359
Query: 358 IIV 360
IIV
Sbjct: 360 IIV 362
>pir||E70312 conserved hypothetical protein aq_128 - Aquifex aeolicus
>gi|2982882|gb|AAC06502.1| (AE000675) hypothetical
protein [Aquifex aeolicus]
Length = 472
Score = 263 bits (666), Expect = 2e-69
Identities = 164/451 (36%), Positives = 243/451 (53%), Gaps = 30/451 (6%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
KK+ L+ P I+ N+ T+ N++ ++V +S A+ A G + WF++ +M +GT
Sbjct: 17 KKVVKLSIPIIVVNLLYTVENMISMILVSSISPSAVAATGFSLSLLWFIYSLMALSYSGT 76
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAY 125
L+A+ VG K ++ S I ++++F+I +P+ +G ++K++GA V +A
Sbjct: 77 NILIAQFVGAK--KDPSPILINGLFLSFLISLPLFFYGKDFVLFLMKVLGASETVRSLAK 134
Query: 126 AYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRL 185
YL +F F PI F+ F+ A GAGDTKTPMK+ I+MN+ + Y L+ GKFG P+L
Sbjct: 135 EYLTPIFWFIPIGFLTNTFYGAYNGAGDTKTPMKVAIIMNLTHIGTAYTLINGKFGLPKL 194
Query: 186 GPVGAAWASGIGITIAFLVGMYLFITNKLILKPV-LDLSLRFDIIEKILRIGTPTMLERG 244
G GA W I +AF + +L I K KP L L L ++ K++R+GTPT LER
Sbjct: 195 GVEGAGWGIAISEILAFFIYTFLLIFFK---KPFPLHLRLEPKLLFKMVRLGTPTALERA 251
Query: 245 LFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEE 304
+ + ++V +A+FG L+AH IGLRIESI++M FG IA++ L GQN GA+
Sbjct: 252 ITTLSFNVFVGFLAKFGDKVLAAHQIGLRIESISFMIGFGVMIASTTLAGQNYGARNYRG 311
Query: 305 AERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISE 364
V + T + MS +L++FP YL PF DP V A YL IVGIS+
Sbjct: 312 MVHAVNTSAHFTALVMSLTGLILILFPHYLVYPF--SRDPE---VIEWASYYLQIVGISQ 366
Query: 365 IPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPGF 424
+ + SGAL+G G T PL+V S LFRI+P+Y L P
Sbjct: 367 PAMAYASIYSGALKGMGKTHIPLFVNISSFWLFRIIPSYFLLKVIHSP------------ 414
Query: 425 KFPGMGVIAAWIGMSLETFVTAGLFWLVFKR 455
+ W M+ ET V A ++ VFK+
Sbjct: 415 -------LVPWGFMTFETAVRALFYYTVFKK 438
>pir||H72331 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981345|gb|AAD35897.1|AE001748_13 (AE001748)
conserved hypothetical protein [Thermotoga maritima]
Length = 464
Score = 223 bits (563), Expect = 3e-57
Identities = 151/466 (32%), Positives = 238/466 (50%), Gaps = 39/466 (8%)
Query: 3 DIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIS 62
+IRK+L LA PA+ N+ Q L + DT +GH S A+ VGL QV W + +++A S
Sbjct: 17 EIRKELIKLALPAMGENVLQMLFGMADTAFLGHYSWKAMSGVGLSNQVFWVVQVVLIAAS 76
Query: 63 TGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIM-GAKGEVL 121
G +A +G N + +A S+++A G+ ++ L D ++ I +GE+
Sbjct: 77 MGATVTIANAIGAGNRKAVRSLAWNSVFLAIFTGV-ILTALTPLSDVLINIFPNLEGEIE 135
Query: 122 EIAYAYLRVLFLFYPIRFMGFAFFSA-LRGAGDTKTPMKLNILMNVINAVLDYLLVFGKF 180
A YL+V+ L + F A FSA LRGAGDT+TPM + L N +N LDY ++FGKF
Sbjct: 136 SSAKEYLKVI-LSGSMGFSIMAVFSAMLRGAGDTRTPMIVTGLTNFLNIFLDYAMIFGKF 194
Query: 181 GFPRLGPVGAAWAS------GIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILR 234
GFP +G GAA A+ G GI + F K ++ P ++ ++ILR
Sbjct: 195 GFPEMGVRGAAVATILSRFVGAGILTYVIFKREEFQLRKGLVPP------KWSSQKEILR 248
Query: 235 IGTPTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVG 294
+G PT +E +FS ++ +I+ G A + H IG+ +ES+++MPAFG S+A + LVG
Sbjct: 249 VGFPTAIENFVFSTGVLMFANILLIAGAEAYAGHRIGINVESLSFMPAFGISVAITTLVG 308
Query: 295 QNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAV 354
+ G E +++ ++ +F + ++ +FP L F S DP + L V
Sbjct: 309 RYNGMGNKEHVLGVIRQGWILSLLFQVTVGIIIFLFPEPLIRIFTS--DPQIIEISKLPV 366
Query: 355 IYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPEL 414
I+G+ + L + ++GALRG G+T P+ +T +S R+
Sbjct: 367 ---KIIGLFQFFLAIDSTMNGALRGTGNTLPPMIITFISIWTARL--------------- 408
Query: 415 SIGPFTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKK 460
P F K+ +G++ AWIGM + + L L F GKW+K
Sbjct: 409 ---PVAFVMVKYFQLGLLGAWIGMIADIIFRSTLKLLFFLSGKWEK 451
>gb|AAG20494.1| (AE005121) DNA damage-inducible protein; Dip1 [Halobacterium sp.
NRC-1]
Length = 513
Score = 202 bits (508), Expect = 8e-51
Identities = 139/487 (28%), Positives = 242/487 (49%), Gaps = 46/487 (9%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVS-SVALGAVGLGGQVSWFMFPIMMAISTG 64
++ + LA PA++ +TLL D +V + S A+ A+ +G Q + F + +A+++G
Sbjct: 30 EEAFDLAVPAMVTGGLRTLLRTADFFMVSIATGSTAVAALEIGFQYYFIPFGLALALTSG 89
Query: 65 TLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIA 124
T+++V+R G + A+ +QS+++A ++ +P+ D ++ ++ + E++E+
Sbjct: 90 TISVVSRFKGADDHAGANFAIKQSLWLALLVSLPITAGTWVYADSMIGLLNSNPEIIELG 149
Query: 125 YAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPR 184
AYLRV+ L RF G AL GAGDT+TPM + ++ N L+ +L+FG + FP
Sbjct: 150 AAYLRVVMLTVVFRFWGMTASRALAGAGDTRTPMYVRLITLPTNIALNAVLIFGIWVFPE 209
Query: 185 LGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFD-------IIEKILRIGT 237
LG VGAAW + I +A +V + ++ + D++L F + +I+R+
Sbjct: 210 LGVVGAAWGTAIANAVAGIVFFAVLLSGR------WDVTLSFSGKQWDWGVASEIVRVSL 263
Query: 238 PTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNL 297
P R +F F ++ ++ F ++A+ IG R+ +A MPA+G+S A+S LVGQ L
Sbjct: 264 PLAGTRLSRTFGRFPFLFVLGLFSHQVVAAYAIGRRVMLLALMPAWGYSTASSTLVGQQL 323
Query: 298 GAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYL 357
GA P+EA + L++ + +L V G + F SL V ++
Sbjct: 324 GAGDPDEAAAYGWQTLRVALATQLIIGALLFVAAGPIASAFTPER-------FSLTVTFI 376
Query: 358 IIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYL------------- 404
I G+S + L GALRGAGDT+ PLY + + R+ A+L
Sbjct: 377 RIFGLSVAGFSVARTLRGALRGAGDTRWPLYGGLIGTYIVRLPLAFLALDPGQIISAGPW 436
Query: 405 --------LGFG-FEIPELSIGPFTFPGFKFP---GMGVIAAWIGMSLETFVTAGLFWLV 452
L G P +++G T PGF G G A ++ + + + A + ++
Sbjct: 437 VIDATVHSLSVGPVTTPTIALGVLTIPGFTVAPGLGWGFAAIFLAIVGDMYTRAAVNFVR 496
Query: 453 FKRGKWK 459
F+ G W+
Sbjct: 497 FRSGAWR 503
>pir||C72561 hypothetical protein APE1773 - Aeropyrum pernix (strain K1)
>gi|5105463|dbj|BAA80776.1| (AP000062) 423aa long
hypothetical protein [Aeropyrum pernix]
Length = 423
Score = 197 bits (495), Expect = 3e-49
Identities = 126/429 (29%), Positives = 215/429 (49%), Gaps = 27/429 (6%)
Query: 27 LVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLALVARRVGEKNFEEASRIAE 86
+VDT VG + S ++ AVG G + W + G L ++ + +G N R A
Sbjct: 12 IVDTYFVGGLGSESIAAVGAAGYLIWLYMVFSTLVYMGVLVILGQAIGSGNRGLVERAAG 71
Query: 87 QSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRVLFLFYPIRFMGFAFFS 146
+ + ++ ++ I V ++L ++ EV ++A+ YL V L + ++ + +
Sbjct: 72 EGLTLSILLSIIVCAAAFAASKQLLVVLAP--EVDQLAWEYLSVSLLTVALHYVTILYDA 129
Query: 147 ALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPVGAAWASGIGITIAFLVGM 206
R G T + + + + N LD +L++G+ G P LG GAAWAS + LV +
Sbjct: 130 VFRALGKTMPILYSSGVFTLANTALDPILIYGRLGAPALGVEGAAWASVAASLLGLLVLV 189
Query: 207 YLFITNKLILKPVLDLSLRFDIIEKILRIGTPTMLERGLFSFYNFLYVSIVARFGKIALS 266
YL + L+P+ S + IL +G P+M+ER +F N +Y+ V+R G AL+
Sbjct: 190 YLSRYLDVGLRPLRPTS----VSRSILALGFPSMVERVVFVVGNVVYLGSVSRCGADALA 245
Query: 267 AHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAERTVKEALKMTTMFMSAMAFV 326
AH IG+RIES+A++P F + A+ +VG +GA + E++ T E +K++++ + +
Sbjct: 246 AHTIGVRIESLAFLPLFSIATASGVMVGWEVGAGRIAESKSTGWELIKLSSL-IGLVVGA 304
Query: 327 LMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEIPLGMTFVLSGALRGAGDTKSP 386
+ G+L P + DP V LA +YL+I G++E LG+ V +R AGDT++P
Sbjct: 305 ALALGGWLVTPIFT-GDPR---VAWLAALYLVIAGLTEPLLGVVMVAGQIIRNAGDTRTP 360
Query: 387 LYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPGFKFPGMGVIAAWIGMSLETFVTA 446
V S + R++PAYLL PG G+ V+ AW+ M ++ A
Sbjct: 361 TLVNLGSLYILRVVPAYLL----------------PGLMPTGLCVLGAWLAMGIDIVGRA 404
Query: 447 GLFWLVFKR 455
++ R
Sbjct: 405 AAIVFIYLR 413
>pir||H71898 hypothetical protein jhp0696 - Helicobacter pylori (strain J99)
>gi|4155262|gb|AAD06282.1| (AE001501) putative
[Helicobacter pylori J99]
Length = 417
Score = 194 bits (488), Expect = 2e-48
Identities = 138/438 (31%), Positives = 216/438 (48%), Gaps = 28/438 (6%)
Query: 24 LLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLALVARRVGEKNFEEASR 83
L+ + VG +S + A+G+G Q + I + TGT A+++R VG ++F + +
Sbjct: 2 LVVALSVFFVGKISHHHIVALGVGLQFLMLFYGINTILYTGTNAILSRLVGARDFAQINH 61
Query: 84 IAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRVLFLFYPIRFMGFA 143
AF+I + V+ FL + L M + ++ YL VL + P F+
Sbjct: 62 AFSSIFIGAFVICLGVLFASYFLIEPFLNWMQLQDPSRQLTQDYLEVLVIALPSIFLKNV 121
Query: 144 FFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPVGAAWASGIGITIAFL 203
SAL DT TP + I+M + L+ L+FG FGF +G VG+A A+ + ++ L
Sbjct: 122 LVSALASFSDTLTPFIVKIIMVIACIFLNQALIFGDFGFKEMGIVGSALAN-VVVSYWEL 180
Query: 204 VGMYLFI-TNKLILKPVLDLSLRFDIIEKILRIGTPTMLERGLFSFYNFLYVSIVARFGK 262
+ + L+I K+ LK ++ F ++ + ++G P ER L F L VA +G
Sbjct: 181 LALSLWIQIKKIPLK--FKITFHFSFLKTMFKVGWPAGFERLLSLFSLILLSKFVASYGD 238
Query: 263 IALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAERTVKEALKMTTMFMSA 322
L+ IG+R+E+ ++MP FGF IA L GQNLGA KP+ A LK++ M
Sbjct: 239 KVLAGMQIGIRVETFSFMPGFGFMIAAMVLTGQNLGANKPKIATEYAHLILKISMGLMGV 298
Query: 323 MAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEIPLGMTFVLSGALRGAGD 382
+ +L++F F + V +A YLI VG+S+ PL FVL G RGAG
Sbjct: 299 LGVILILFAKEFASLFSQDGE-----VLEVARSYLIAVGLSQAPLIGYFVLDGVFRGAGI 353
Query: 383 TKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPGFKFPGMGVIAAWIGMSLET 442
+K LY+ ++S RI+P YLL FK + V+ A LET
Sbjct: 354 SKVSLYINTLSLWGLRIMPIYLL--------------LIYHFKVEFIFVVIA-----LET 394
Query: 443 FVTAGLFWLVFKRGKWKK 460
F+ + +++ VF +G WK+
Sbjct: 395 FLRSFIYYKVFSKGIWKR 412
>pir||G64614 conserved hypothetical integral membrane protein HP0759 -
Helicobacter pylori (strain 26695)
>gi|2313885|gb|AAD07807.1| (AE000588) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 417
Score = 193 bits (486), Expect = 3e-48
Identities = 139/438 (31%), Positives = 215/438 (48%), Gaps = 28/438 (6%)
Query: 24 LLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLALVARRVGEKNFEEASR 83
L+ + VG +S + A+G+G Q + I + TGT A+++R VG ++F + +
Sbjct: 2 LVVALSVFFVGKISHHHIVALGVGLQFLMLFYGINTILYTGTNAILSRLVGARDFTQINH 61
Query: 84 IAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRVLFLFYPIRFMGFA 143
AF+I + V+ FL + L M + ++ YL VL + P F+
Sbjct: 62 AFSSIFIGAFMICLGVLFVSYFLIEPFLNWMQLQDPSRQLTQDYLEVLVVALPSIFLKNI 121
Query: 144 FFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPVGAAWASGIGITIAFL 203
SAL DT TP + I+M + L+ L+FG FGF +G VG+A A+ + + L
Sbjct: 122 LVSALASFSDTLTPFIVKIIMVIACIFLNQALIFGDFGFKEMGIVGSALANVVVSYLELL 181
Query: 204 -VGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTMLERGLFSFYNFLYVSIVARFGK 262
+G+++ I K+ LK ++ F ++ + R+G P ER L F L VA +G
Sbjct: 182 ALGVWIQI-KKIPLK--FKITFHFSFLKTMFRVGWPAGFERLLSLFSLILLSKFVASYGD 238
Query: 263 IALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAERTVKEALKMTTMFMSA 322
L+ IG+R+E+ ++MP FGF IA L GQNLGA KP+ A LK++ M
Sbjct: 239 KVLAGMQIGIRVETFSFMPGFGFMIAAMVLTGQNLGANKPKIATEYAHLILKISMGLMGV 298
Query: 323 MAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEIPLGMTFVLSGALRGAGD 382
+ VL++F F + V +A YLI VG+S+ PL FVL G RGAG
Sbjct: 299 LGIVLVLFAKEFASLFSQDEE-----VLEVARSYLIAVGLSQAPLIGYFVLDGVFRGAGI 353
Query: 383 TKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPGFKFPGMGVIAAWIGMSLET 442
+K LY+ ++S RI+P YLL FK + V+ A ET
Sbjct: 354 SKVSLYINTLSLWGLRIMPIYLL--------------LIHHFKVEFIFVVIA-----SET 394
Query: 443 FVTAGLFWLVFKRGKWKK 460
F+ + +++ VF +G WK+
Sbjct: 395 FLRSFIYYKVFSKGIWKR 412
>pir||H70158 conserved hypothetical integral membrane protein BB0473 - Lyme
disease spirochete >gi|2688416|gb|AAC66867.1| (AE001152)
conserved hypothetical integral membrane protein
[Borrelia burgdorferi]
Length = 454
Score = 178 bits (448), Expect = 9e-44
Identities = 122/420 (29%), Positives = 211/420 (50%), Gaps = 19/420 (4%)
Query: 3 DIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIS 62
++ K L+ +++P ++ NI Q +L D VG + ++ L A+ L G V++F+ I M ++
Sbjct: 16 NLYKVLFLISFPIVITNIIQAFYDLTDMFYVGKLGAMPLSALSLAGPVNFFIIAIAMGMA 75
Query: 63 TGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLE 122
TG+++L+++ +GE NF SR A Q + + F++ + V + F D +L ++G KGE+ E
Sbjct: 76 TGSISLMSKCIGEGNFSRFSRYAGQLIVLNFVLSLFVTICAFFFIDHLLDLLGVKGELKE 135
Query: 123 IAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGF 182
++ Y V PI F+ + L G+T M + + N++N +LD +L+F
Sbjct: 136 LSRVYFYVTIFAIPIMFLSISITYILNAQGETILSMTIVLFANIVNFILDPILIFSF--- 192
Query: 183 PRLGPVGAAWASGIG--ITIAFLVGMYLFITNKL---ILKPVLDLSLRFDIIEKILRIGT 237
+G GAAWA+ +T+ F YLF+T +L + + DL + I++I+ +G
Sbjct: 193 -NMGITGAAWATLFSKLLTVVF----YLFLTYRLNYGLKIHLKDLVIDIRSIKEIVNLGL 247
Query: 238 PTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNL 297
P+ + + S F++ IV L+A+ + I S ++PA G ++VGQNL
Sbjct: 248 PSTFGQIMVSLSFFIFNYIVIEISPKFLAAYGLTNTIISFLFLPAMGIGTGIISIVGQNL 307
Query: 298 GAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYL 357
GAKK E +K+ F+S +++ + F+ N V + A YL
Sbjct: 308 GAKKVNRVEEVLKKG-----FFISLAILLIINSIVIFNKQFILRLFTNDLEVLNYANNYL 362
Query: 358 IIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIG 417
++ I G+ V G L G+G TK + V + L R LP + F I E S+G
Sbjct: 363 LLTTIGTFGYGLQQVFFGGLIGSGRTKIAMIVIFIRLWLIR-LPVVFIFQYFGIMENSLG 421
>pir||B75053 dinf related PAB1439 - Pyrococcus abyssi (strain Orsay)
>gi|5458832|emb|CAB50319.1| (AJ248287) dinF related
[Pyrococcus abyssi]
Length = 468
Score = 170 bits (427), Expect = 3e-41
Identities = 126/462 (27%), Positives = 215/462 (46%), Gaps = 20/462 (4%)
Query: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIST 63
I K L LAWP ++ N+ Q L N+ DT +G + AL A G+ + + + M +
Sbjct: 18 IEKTLLKLAWPIVVNNLIQVLYNITDTFWLGKLGREALSAPGVAWPIIGTLMALGMGFTM 77
Query: 64 GTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEI 123
++V + +G +F++A+R A + L + + L M +
Sbjct: 78 AGFSIVGQYIGAGDFKKANRSAGALFSLVLFFSTLSALISILILPLALDFMNVTPSIRPY 137
Query: 124 AYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFP 183
AY Y V+F P+ F+ F + +R GDTKTP+K++ L +N +LD + +F
Sbjct: 138 AYRYAIVIFAGVPVSFLFMVFNALMRATGDTKTPVKISALTVFLNIILDPIFIF----IF 193
Query: 184 RLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVL-DLSLRFDIIEKILRIGTPTMLE 242
+LG +GAA A+ + + ++G+ + ++ K LK L DL + KI+R+G P+ +
Sbjct: 194 KLGVLGAALATVLSNAVGTIIGVKILMSGKAGLKITLEDLKPDWKFYSKIVRVGLPSSIG 253
Query: 243 RGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKP 302
+ SF + I+ FG + +A+ I R+ + + G S+A +V QN+GA+K
Sbjct: 254 QSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMGTMVAQNVGAEKY 313
Query: 303 EEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGI 362
E A+ + + + V+ VF + + FL +DP A + + Y +I
Sbjct: 314 ERAKVIAERTMVVNFAIAGFAVLVIGVFRVPIFKVFL--DDPEVIAESKIVLEYFLI--- 368
Query: 363 SEIPL--GMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFT 420
+P G+ V++G AG T + ++ + FRI +Y G+ I L I
Sbjct: 369 -SVPFFNGIFVVVTGVFSSAGHTVKSMVMSMLRLWGFRIPLSYAFGYIPAITFLGIRIPM 427
Query: 421 FPGFKFPGMGVIAAWIGMSLETFVTA--GLFWLVFKRGKWKK 460
F F GV + GM L F+ A GL W F +G W +
Sbjct: 428 AELFNFTSRGV---FFGMGLSNFLAAIIGLAW--FLKGSWMR 464
>gb|AAG19206.1| (AE005017) Vng0727c [Halobacterium sp. NRC-1]
Length = 494
Score = 169 bits (425), Expect = 4e-41
Identities = 129/469 (27%), Positives = 217/469 (45%), Gaps = 34/469 (7%)
Query: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIST 63
I K L+ LA P ++ N+ QT NL DT +G ++ AL A+ + + + + M IS
Sbjct: 24 IGKPLFFLAMPIVITNLFQTAYNLADTFWLGQYNTDALAAISFAFPMVFLLISLGMGISV 83
Query: 64 GTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEI 123
LVA+ G E+A A Q++ + + + + G F ++ L ++GA VL
Sbjct: 84 AGSVLVAQYTGAGKDEQAEYAASQTVTFSVLASLLLGGIGYFFVEDFLSVVGASDAVLRP 143
Query: 124 AYAYLRVLFLFYPIRFMGFAFFSAL-RGAGDTKTPMKLNILMNVINAVLDYLLVF----- 177
A +Y++V+ L F GFA F AL RG GDT TPM + V+N VLD L+F
Sbjct: 144 ATSYMQVVALGLAAMF-GFAVFIALMRGYGDTITPMLVMFGSVVLNIVLDPFLIFGWTVV 202
Query: 178 ------GKFGFPRLGPVGAAWASGIGITIAFLVGM-YLFITNKLILKPVLDLSLRFDIIE 230
G FPRLG GAA A+ +AF VG+ +F + + D+ +
Sbjct: 203 ENAPLVGTVSFPRLGIQGAAIATVFSRALAFAVGLAIMFRGTRGVEINAADMLPDLSYLR 262
Query: 231 KILRIGTPTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATS 290
+++RIG P +E + L + IVA F ++A+ IG R+ S+ ++PA +
Sbjct: 263 RLVRIGLPASIEGTGRALSMNLLLFIVATFPDHIVAAYGIGTRVFSVVFLPAIAIARGVE 322
Query: 291 ALVGQNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVK 350
+ GQN+GA KP+ A R + A M +S + ++ +P + F+ N V
Sbjct: 323 TMTGQNVGAGKPDRAARAARLAATMLFGVLSVLGLIVYWYPEPIVSVFVGAGQENSAQVI 382
Query: 351 SLAVIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFE 410
+L V ++ +G+ +G+ RGAG T ++ ++ + R F
Sbjct: 383 EAGSQFLRYVALTFGFIGIARAYTGSFRGAGKTMVAAAISVITLGVIR----------FP 432
Query: 411 IPELSIGPFTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWK 459
+ +IG +G W+ ++ + A + + ++RG W+
Sbjct: 433 LAWATIG----------SLGSAGIWLSFAVSNVIGAIIAYAWYRRGTWR 471
>dbj|BAA15804.1| (D90837) ORF_ID:o347#5~similar to [SwissProt Accession Number
P45272] [Escherichia coli]
Length = 546
Score = 167 bits (419), Expect = 2e-40
Identities = 121/464 (26%), Positives = 219/464 (47%), Gaps = 39/464 (8%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
+++ LA P M N L+ ++ T +V + A+ VGL + + AI GT
Sbjct: 91 REITPLAVPIFMENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGT 150
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMG--AKGEVLEI 123
+VA +G+++ A QS+ I + + + G++++ + A EV +
Sbjct: 151 TVVVAFSLGKRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKAL 210
Query: 124 AYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFP 183
A YL + L YP + ALRGAG+TK P+ +N +N++N ++ +L++G F +P
Sbjct: 211 ALTYLELTVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWP 270
Query: 184 RLGPVGAAWASGIGITIAFLVGMYLFITNKLI-LKPVLDLSLR-------FDIIEKILRI 235
LG VGA G+G+TI+ +G + I P L +SL+ F II +++ I
Sbjct: 271 GLGFVGA----GLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGI 326
Query: 236 GTPTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQ 295
G P +E LF+ L VA G ++ ++I I ++ +P A++ + G+
Sbjct: 327 GIPASVESVLFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITGR 386
Query: 296 NLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVI 355
LG + +AE ++ ++T+ ++A+A++ F G + + DP + V V+
Sbjct: 387 RLGVGQIAQAEIQLRHVFWLSTLGLTAIAWLTAPFAGVMASFYT--QDPQVKHV----VV 440
Query: 356 YLIIVGISEIPL-GMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPEL 414
LI + +P+ ++VL +GA D + ++V+ +S R++ Y+LG
Sbjct: 441 ILIWLNALFMPIWSASWVLPAGFKGARDARYAMWVSMLSMWGCRVVVGYVLGI------- 493
Query: 415 SIGPFTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKW 458
G GV+ W+GM + V A LF+ G+W
Sbjct: 494 -----------MLGWGVVGVWMGMFADWAVRAVLFYWRMVTGRW 526
>sp|P76352|YEEO_ECOLI HYPOTHETICAL 60.1 KDA PROTEIN IN AMN-CBL INTERGENIC REGION
>gi|7466643|pir||B64963 membrane protein yeeO -
Escherichia coli >gi|2367126|gb|AAC75048.1| (AE000290)
orf, hypothetical protein [Escherichia coli K12]
Length = 547
Score = 167 bits (419), Expect = 2e-40
Identities = 121/464 (26%), Positives = 219/464 (47%), Gaps = 39/464 (8%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
+++ LA P M N L+ ++ T +V + A+ VGL + + AI GT
Sbjct: 92 REITPLAVPIFMENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGT 151
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMG--AKGEVLEI 123
+VA +G+++ A QS+ I + + + G++++ + A EV +
Sbjct: 152 TVVVAFSLGKRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKAL 211
Query: 124 AYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFP 183
A YL + L YP + ALRGAG+TK P+ +N +N++N ++ +L++G F +P
Sbjct: 212 ALTYLELTVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSWP 271
Query: 184 RLGPVGAAWASGIGITIAFLVGMYLFITNKLI-LKPVLDLSLR-------FDIIEKILRI 235
LG VGA G+G+TI+ +G + I P L +SL+ F II +++ I
Sbjct: 272 GLGFVGA----GLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGI 327
Query: 236 GTPTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQ 295
G P +E LF+ L VA G ++ ++I I ++ +P A++ + G+
Sbjct: 328 GIPASVESVLFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITGR 387
Query: 296 NLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVI 355
LG + +AE ++ ++T+ ++A+A++ F G + + DP + V V+
Sbjct: 388 RLGVGQIAQAEIQLRHVFWLSTLGLTAIAWLTAPFAGVMASFYT--QDPQVKHV----VV 441
Query: 356 YLIIVGISEIPL-GMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPEL 414
LI + +P+ ++VL +GA D + ++V+ +S R++ Y+LG
Sbjct: 442 ILIWLNALFMPIWSASWVLPAGFKGARDARYAMWVSMLSMWGCRVVVGYVLGI------- 494
Query: 415 SIGPFTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKW 458
G GV+ W+GM + V A LF+ G+W
Sbjct: 495 -----------MLGWGVVGVWMGMFADWAVRAVLFYWRMVTGRW 527
>pir||E71172 probable damage-inducible protein - Pyrococcus horikoshii
>gi|3256983|dbj|BAA29666.1| (AP000002) 449aa long
hypothetical damage-inducible protein [Pyrococcus
horikoshii]
Length = 449
Score = 166 bits (415), Expect = 7e-40
Identities = 127/459 (27%), Positives = 206/459 (44%), Gaps = 31/459 (6%)
Query: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIST 63
I K L LA+P I+ N+ Q + NL DT + + L A G + WFM I +
Sbjct: 16 IEKTLIRLAYPLIINNLVQVMYNLTDTFWLAKLGRAELSAPGTVWPLLWFMISIGSGFAV 75
Query: 64 GTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEI 123
A+V++ VG +++AS++A + + + G+ + LK + +V
Sbjct: 76 AGFAMVSQYVGAGEYKKASKVAGSLYSLLLALSTIIAFLGILISPLALKFIKVTPDVYPY 135
Query: 124 AYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFP 183
A Y++++F PI +AF LR GDTKTP+K+NIL ++N +LD + +FG
Sbjct: 136 ALKYMKIVFGGIPIALTLYAFNFILRAVGDTKTPVKVNILTILLNIILDPVFIFGL---- 191
Query: 184 RLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVL-DLSLRFDIIEKILRIGTPTMLE 242
G +GAA A+ I ++G YL T ++ +K L DLS + K +IG P +
Sbjct: 192 NYGVLGAALATVISEGTGSVIGGYLLFTGRVSIKLSLEDLSPDIKLYIKTFKIGLPASIS 251
Query: 243 RGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKP 302
SF L I+ +G +A + + I R+ + + A G S A +VGQN+GA+K
Sbjct: 252 ESTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNVGAEKY 311
Query: 303 EEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGI 362
E A+ +A+ + + + ++F + F+ NDP V Y
Sbjct: 312 ERAKEIAIKAMLTNFLILIFGTMLFIIFREEIFRFFI--NDPGILKESEKVVKYF----A 365
Query: 363 SEIP-LGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTF 421
+ P G+ ++ AG TK L + + RI +Y LG +
Sbjct: 366 ASFPFFGIFSAVTNVFASAGHTKKNLTLGLIRLWGLRIPLSYYLGKTLK----------- 414
Query: 422 PGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKK 460
GV WIGM L + A + +L F +G W +
Sbjct: 415 -----DSAGV---WIGMGLSNVIAALVGFLWFLKGSWMR 445
>pir||E72471 probable DNA-damage-inducible protein APE2414 - Aeropyrum pernix
(strain K1) >gi|5106118|dbj|BAA81429.1| (AP000064) 480aa
long hypothetical DNA-damage-inducible protein
[Aeropyrum pernix]
Length = 480
Score = 164 bits (412), Expect = 1e-39
Identities = 125/458 (27%), Positives = 206/458 (44%), Gaps = 26/458 (5%)
Query: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIST 63
I K + LA P + + VD + +G VS+ L A + W + + I+T
Sbjct: 23 IVKVILALATPIVAARLLAATQESVDAIFLGRVSTEDLAAPAAASPLLWLFAGLGIGINT 82
Query: 64 GTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEI 123
ALV++ +G +++ A R A + + ++G L + + V + G +G LE+
Sbjct: 83 TLSALVSQAIGARDYASAQRYASKLLGATLMLGAASALAIILTAETVFILQGFQGRSLEV 142
Query: 124 AYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFP 183
A AY V + P F F + + +GDT+TP K++ L +++N +LD +L+FG P
Sbjct: 143 ALAYTLVEAVGMPFMLALFYFNAVMAASGDTRTPFKVSALSSILNVILDPILIFGLILLP 202
Query: 184 RLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTMLER 243
LG VGAA A+ + A + YL + + + R +I ILRIG P L+R
Sbjct: 203 PLGAVGAAVATVLARAAAVSIAFYLLLRGAPGFRVKPSMPDR-QLIGHILRIGGPVSLQR 261
Query: 244 GLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPE 303
+ S + + IVAR G ++A+ + L I I FGF+IAT+ +VGQNLGA
Sbjct: 262 LVVSMGFLVMMGIVARLGAPVVAAYNVSLVIIHIVQSATFGFNIATATVVGQNLGASNIS 321
Query: 304 EAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGIS 363
A R + + +S A ++ L F S + + A + ++ IV +
Sbjct: 322 RAVRAAYTGVALVFGLLSIGAVAIVGGRSMLVSLFTSIEEVQFYAERMIS-----IVALG 376
Query: 364 EIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPG 423
LG F G RG+G T + L RI AY L + + + ++ +
Sbjct: 377 MPFLGAFFTAMGVARGSGRTAFISALGIARLWLLRIPAAYTLVYIYSLGDMGV------- 429
Query: 424 FKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGK-WKK 460
W+ M+L + AG + + G+ W K
Sbjct: 430 -----------WLAMTLSNII-AGTLAIAWVAGRTWAK 455
>pir||C71172 hypothetical protein PH0575 - Pyrococcus horikoshii
>gi|3256981|dbj|BAA29664.1| (AP000002) 472aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 472
Score = 163 bits (409), Expect = 3e-39
Identities = 126/466 (27%), Positives = 219/466 (46%), Gaps = 37/466 (7%)
Query: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIST 63
I L+ LAWP I+ N+ Q L N+ DT +G + AL A G VSW + +MA+
Sbjct: 31 IEGTLFKLAWPIIINNLIQVLYNITDTFWLGKLGRAALSAPG----VSWPIIGTLMALGI 86
Query: 64 G-TLA---LVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGE 119
G T+A +V + +G NFE+A+R A + + + + L M
Sbjct: 87 GFTMAGFSIVGQYIGAGNFEKANRSAGALFSLIIFFSTASAILSILILPYALSFMHVTSS 146
Query: 120 VLEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGK 179
+ AY Y ++F P+ F+ F +R GDT+TP+K++++ +N +LD + +F
Sbjct: 147 IRPYAYKYSLIIFAGVPMSFLFMTFNVLMRAIGDTRTPVKISLITVFLNIILDPIFIF-- 204
Query: 180 FGFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLD-LSLRFDIIEKILRIGTP 238
LG GAA A+ + ++ ++G+ + + + LK + L + KI+RIG P
Sbjct: 205 --ILNLGVEGAALATVLSNSVGTVIGVRILTSGRAGLKISRENLKPDWKFYSKIVRIGLP 262
Query: 239 TMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLG 298
+ + + SF + I+ FG + +A+ I R+ + + G S+A S +V QN+G
Sbjct: 263 SSIGQSANSFGFVVLTRIIMGFGDVTYAAYVITTRLVNFITSISRGISMAMSTMVAQNIG 322
Query: 299 AKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLI 358
A+ E A+ + + + + ++ +F + + FL NDP A + + Y +
Sbjct: 323 AENYERAKVIAERTMVINFLIAGIAVLIIGIFRVPIFKVFL--NDPMVIAESKIVLEYFL 380
Query: 359 IVGISEIPL--GMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSI 416
I +P G+ V++GA +G T + ++ + FRI +Y+ G+ +L
Sbjct: 381 I----SVPFFNGIFVVVTGAFSSSGHTVKSMIMSMLRLWGFRIPLSYVFGYVPTFAKL-- 434
Query: 417 GPFTFPGFKFPGMGVIAAWIGMSLETFVTA--GLFWLVFKRGKWKK 460
F F GV + GM L F+ A GL W F +G W +
Sbjct: 435 -------FGFTSRGV---FFGMGLSNFLAAIVGLAW--FLKGSWMR 468
>pir||JC4562 hypothetical 10.5K protein - Pyrococcus sp
>gi|971572|emb|CAA62488.1| (X91006) orf C [Pyrococcus
sp.] >gi|1586541|prf||2204238B ORF C [Pyrococcus sp.]
Length = 94
Score = 162 bits (407), Expect = 6e-39
Identities = 72/93 (77%), Positives = 86/93 (92%)
Query: 371 FVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPGFKFPGMG 430
FVLSGALRGAGDTKSPLY+T++SKLLFRI+P+Y+LGFGF IP+ ++ +TFPGF F G+G
Sbjct: 2 FVLSGALRGAGDTKSPLYITAISKLLFRIIPSYILGFGFTIPKFTVFGYTFPGFHFSGLG 61
Query: 431 VIAAWIGMSLETFVTAGLFWLVFKRGKWKKIKI 463
V+AAWIGMSLETF+TAGLFWLVF+RGKWK IKI
Sbjct: 62 VVAAWIGMSLETFITAGLFWLVFRRGKWKHIKI 94
>pir||A82049 conserved hypothetical protein VC2671 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657264|gb|AAF95812.1|
(AE004332) conserved hypothetical protein [Vibrio
cholerae]
Length = 460
Score = 158 bits (396), Expect = 1e-37
Identities = 115/404 (28%), Positives = 195/404 (47%), Gaps = 6/404 (1%)
Query: 14 PAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLALVARRV 73
P I G ++ + NLVDT + + + AL A+ V++ + I M I G + R +
Sbjct: 34 PMIFGLVAILMFNLVDTFFISLLGTQALAAISYTFPVTFAVNCITMGIGVGLSTCIGRLL 93
Query: 74 GEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRVLFL 133
G+ + +A+R++ + +A ++ GL + + ++GA E++ + Y+ V +L
Sbjct: 94 GQGDGRQAARVSSHGLLLALLLVAAASTLGLLTIEPLFLLLGASHELIPLIKEYMVVWYL 153
Query: 134 FYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPVGAAWA 193
P+ + A SA+R GDTKTP K+ +L +IN LD LL+FG FP LG GAA A
Sbjct: 154 TIPLLVLPMAGNSAIRATGDTKTPAKIMMLAGLINGALDPLLIFGYGPFPELGIQGAAIA 213
Query: 194 SGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTMLERGLFSFYNFLY 253
S A + +YL I + +L + L D ++IL+IGTP L + L
Sbjct: 214 SAFSWLGALIGSLYLLIKREKLL-AIPSLPHLRDDWQQILKIGTPAALSTAMNPISGALL 272
Query: 254 VSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAERTVKEAL 313
+ +++ G A++A+ RIESI + + A + + QNLGA+ P + + +L
Sbjct: 273 MIMLSSHGTAAVAAYGATQRIESILILVLMSLTSALTPFMAQNLGAQNPARSFAGLFLSL 332
Query: 314 KMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEIPLGMTFVL 373
+ + +F M F++MV S QAV+ L YL++V +S G+ +L
Sbjct: 333 RFSLLF-QLMVFIMMVPLSIPLAALFSQE----QAVRDLLWHYLLVVPVSYGFQGVVMML 387
Query: 374 SGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIG 417
AL + + +F + A++ G + I L IG
Sbjct: 388 VSALNALHQPLKAFQWSFMRLFVFTLPAAWIGGRLYNIEGLFIG 431
>dbj|BAB06655.1| (AP001517) unknown conserved protein [Bacillus halodurans]
Length = 452
Score = 156 bits (391), Expect = 4e-37
Identities = 122/456 (26%), Positives = 201/456 (43%), Gaps = 25/456 (5%)
Query: 8 LWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLA 67
L+ L WP + + L+ DT+++ S A+ AVG+ Q+ + + ++TGT
Sbjct: 11 LFALTWPIFIEILLHMLMGNADTLMLSQYSDDAVAAVGVSNQILAVIIVMFGFVATGTSI 70
Query: 68 LVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAY 127
LVA+ +G K E A ++A S+ I GI + L + G +LK M +L+ A Y
Sbjct: 71 LVAQHLGAKERENAGKVAVVSIGANLIFGIVLGLLLIAFGPPILKAMQLDDSLLQEATLY 130
Query: 128 LRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGP 187
L+++ F ++ + + LR TK M + I MN++N + +YL +FG FG P LG
Sbjct: 131 LQIVGGFSVVQSLIMTAGAILRSHSFTKDVMYVTIGMNILNVIGNYLFIFGPFGIPVLGV 190
Query: 188 VGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIE--KILRIGTPTMLERGL 245
G A ++ + TI V L P L RF +E +L+IG P+ E+
Sbjct: 191 TGVALSTVVSRTIGLFVIAILLYKRIRGELPFAYLLKRFPRVELRNLLKIGIPSAGEQLS 250
Query: 246 FSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEA 305
++ + +A G AL+ + ++ A T L+G +GAK+ + A
Sbjct: 251 YNASQLVITYFIAMMGTEALTTKVYTQNLMMFVFLFAVAIGQGTQILIGHQVGAKQIQAA 310
Query: 306 ERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEI 365
+L + +MA V F L F + D + SL L++ I E
Sbjct: 311 YVRCFRSLWIAMTVSVSMAVVFFAFSTPLLGIFTDNPD-----ILSLGTTLLLLTIILEP 365
Query: 366 PLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPGFK 425
V+ +LR AGD K P+Y+ VS + AYLLG
Sbjct: 366 GRACNLVVISSLRAAGDVKFPVYLAIVSMWGIAVPIAYLLGLPL---------------- 409
Query: 426 FPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKKI 461
G+G+I WI + + L +++GKW+++
Sbjct: 410 --GLGLIGVWIAFIADEWFRGLLMIWRWRKGKWQEM 443
>pir||A69905 conserved hypothetical protein yoeA - Bacillus subtilis
>gi|2634220|emb|CAB13720.1| (Z99113) similar to
hypothetical proteins from B. subtilis [Bacillus
subtilis] >gi|2634231|emb|CAB13730.1| (Z99114) similar
to hypothetical proteins from B. subtilis [Bacillus
subtilis]
Length = 463
Score = 155 bits (389), Expect = 7e-37
Identities = 115/455 (25%), Positives = 207/455 (45%), Gaps = 29/455 (6%)
Query: 14 PAIMGNISQTLLNLVDTMIVGHVSSV-ALGAVGLGGQVSWFMFPIMMAISTGTLALVARR 72
P ++ N+ Q++ LV M VG V A+ AV + + + + I +G+ L+ +
Sbjct: 28 PLLLSNVLQSVGQLVGMMAVGRWLGVDAVAAVSSFFPLFFLLISFTIGIGSGSSILIGQA 87
Query: 73 VGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRVLF 132
G KN E + ++ F++G+ + + G ++L++MG V+ ++ Y R+LF
Sbjct: 88 YGAKNEERLKAVVGTTLTFTFLLGVVLAVIGSIFTLDILRLMGTPENVIHVSANYARILF 147
Query: 133 LFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPVGAAW 192
P F+ FA+ + LRG GD+KTP I+ VIN L +L+ G FGFP+LG G+A+
Sbjct: 148 YAMPFMFLYFAYTTFLRGTGDSKTPFYTLIVSTVINIALLPVLILGMFGFPKLGIYGSAY 207
Query: 193 ASGIGITIAFLVGMYLFITNK--LILKPVLDLSLRFD--IIEKILRIGTPTMLERGLFSF 248
A+ I FLV M K L + L+ D ++ +LR+G P + L S
Sbjct: 208 ATVISTIATFLVLMVYLRKRKHPLQFDKTVRRYLKMDKELLVLLLRLGVPASINMILVSL 267
Query: 249 YNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAERT 308
+S V +G A +A+ + ++ S MPA IA S Q++GA + + ++
Sbjct: 268 SEIAVISFVNHYGSNATAAYGVVNQVASYVQMPAVSLGIAVSIFAAQSIGANEFDRLKQV 327
Query: 309 VKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEIPLG 368
++ + + + + ++ VF + FL+ + Y A + L S + G
Sbjct: 328 IRVGIWLNYIIGGVLIILIYVFSHQILSLFLTEQESLYIAHRLLMTTLW-----SYLLFG 382
Query: 369 MTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPGFKFPG 428
++S +R +G P ++ +F I +G E+ P F +
Sbjct: 383 NAQIISATMRASGTVLWPTVIS-----IFAI-------WGVEV------PVAFVLSHYTK 424
Query: 429 MGVIAAWIGMSLETFVTAGLFWLVFKRGKWKKIKI 463
+ ++ W+G F + L + + WKK +I
Sbjct: 425 LEILGVWVGYP-AAFAVSLLLIYGYYQFVWKKKQI 458
>pir||C75053 DNA damage-inducible protein. PAB1438 - Pyrococcus abyssi (strain
Orsay) >gi|5458833|emb|CAB50320.1| (AJ248287) DNA
DAMAGE-INDUCIBLE PROTEIN. [Pyrococcus abyssi]
Length = 449
Score = 151 bits (378), Expect = 1e-35
Identities = 126/461 (27%), Positives = 205/461 (44%), Gaps = 35/461 (7%)
Query: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIST 63
I K L LA+P I+ N+ Q + NL DT + + L A G + WFM +
Sbjct: 16 IEKTLLRLAYPLIINNLVQVMYNLTDTFWLAKLGRSELSAPGTVWPLLWFMMSLGSGFVV 75
Query: 64 GTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEI 123
A+V++ +G +++ASR+A + ++ + + G+ + L+ + +V
Sbjct: 76 AGFAMVSQYIGAGEYKKASRVAGSLYSLLLMLSLLLAGIGIVISPFALRFIKVTPDVYPY 135
Query: 124 AYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFP 183
A Y+ +F P+ F LR AGDTKTP+K+NIL ++N +LD + +F
Sbjct: 136 ALKYMIAIFAGVPVALTLHTFNFVLRAAGDTKTPVKVNILTIILNIILDPVFIF----IL 191
Query: 184 RLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDI--IEKILRIGTPTML 241
+G +GAA A+ I I ++G YL T K+ +K D LR D+ K +IG P +
Sbjct: 192 DMGVLGAAIATIISEGIGSIIGGYLLFTGKVGIKISRD-DLRPDVNLYIKTFKIGLPASI 250
Query: 242 ERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKK 301
SF L I+ +G +A + + I R+ + + A G S A +VGQN+GA+
Sbjct: 251 GDSTNSFGFVLLNRIIYTYGTVAFATYTITNRLTNFMFAFADGISQAMGTMVGQNIGAEN 310
Query: 302 PEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPF-LSHNDPNYQAVKSLAVIYLIIV 360
+ A +A M T F+ + F ++F + E F NDP V Y
Sbjct: 311 YKRAREVAIKA--MATNFL-ILVFGTLLFMAFREEIFRFFINDPGIIKESEKVVKYF--- 364
Query: 361 GISEIP-LGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPF 419
+ P G+ ++ AG TK L + + RI +Y LG ++G
Sbjct: 365 -AASFPFFGIFSAVTNVFASAGHTKKNLILGIIRLWGLRIPLSYYLG-------TTLGDS 416
Query: 420 TFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKK 460
WIGM L ++A + + F +G W +
Sbjct: 417 A------------GVWIGMGLSNVISALIGFAWFLKGSWMR 445
>pir||C75474 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458506|gb|AAF10371.1|AE001934_2 (AE001934)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 464
Score = 142 bits (354), Expect = 9e-33
Identities = 111/404 (27%), Positives = 194/404 (47%), Gaps = 8/404 (1%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
+++ +A P + + Q +L ++ +IVG + +VA+ AVGL G +S+ F + A+ GT
Sbjct: 17 REIAAIAVPVSLEMVIQLVLTFINQVIVGTLGAVAVAAVGLAGSLSFLFFVTLGALGAGT 76
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAY 125
L+ARR G + + ++ + ++G + + +L++ G +V A
Sbjct: 77 SILIARRFGAGDRAGVNHTLSATLLLGTLLGAALTVPTTLGAPSLLRLAGGAPDVTGAAA 136
Query: 126 AYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRL 185
YL+++ L +G ALR G +TP+ +L + A+L LVFG+ G PRL
Sbjct: 137 PYLQIVMLSLVPGLIGGVLSGALRSLGRARTPLVATLLSVALEALLAAGLVFGQLGLPRL 196
Query: 186 GPVGAAWASGIGITI-AFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTMLERG 244
G VGAAWA T A + ++ +L + S +I+ +L + P
Sbjct: 197 GLVGAAWAVAAANTFKALYLAFQVYGPRQLAAFTLPGRSSWREIVGPLLALSAPLAFTEF 256
Query: 245 LFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEE 304
++ F+Y ++ AR G +AL+A I +E I + +FG AT+ L+G++LGA
Sbjct: 257 VWGLGGFMYNAVFARVGTVALAAAGIVTTLEGIFIVGSFGLMSATTVLLGRSLGAGDGAG 316
Query: 305 AERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQA-VKSLAVIYLIIVGIS 363
A+R + AL T ++ +AF L+ L P + P A V+ +A++ ++I +
Sbjct: 317 AQRWL--ALISRTGLVTGLAFGLLFALSGLLVPLVF---PKVGAEVQHIALLGILINAAA 371
Query: 364 EIPLGMTFVL-SGALRGAGDTKSPLYVTSVSKLLFRILPAYLLG 406
++ +L GAL GD K + V L + A LG
Sbjct: 372 QVIKVRNMILGGGALPSVGDGKGVITGDVVGAFLVGLPLAIGLG 415
>pir||T36597 hypothetical protein SCH24.32c - Streptomyces coelicolor
>gi|4808406|emb|CAB42738.1| (AL049826) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 448
Score = 138 bits (345), Expect = 1e-31
Identities = 121/455 (26%), Positives = 203/455 (44%), Gaps = 35/455 (7%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
+++ LA PA +++ L + D+ IVGH+ + L +G+ + + + ++ T
Sbjct: 20 REIVALAVPAFGALVAEPLFVMADSAIVGHLGTAQLAGLGIASALLTTAVSVFVFLAYAT 79
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAY 125
A V+RRVG N + A R +++A ++G V+ L ++++ GA A
Sbjct: 80 TAAVSRRVGAGNLQAAIRQGMDGIWLALLLGAAVVAVFLPAAPSLVELFGASDTAAPYAT 139
Query: 126 AYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRL 185
YLR+ L P + A LRG +T+TP+ + + + NAVL+ LLV+G L
Sbjct: 140 TYLRISSLGIPAMLVVLASTGVLRGLQNTRTPLYVAVAGFIANAVLNVLLVYG----AGL 195
Query: 186 GPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDI--IEKILRIGTPTMLER 243
G G+AW G I + +YL++ + + SLR D+ I + G P ++
Sbjct: 196 GIAGSAW--GTVIAQCGMAAVYLWVVVRGARQH--GASLRPDLVGIRASAQAGMPLLVRT 251
Query: 244 GLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPE 303
+ ++ AR G ++AH I L + S+ +IA A++G+ LGA +
Sbjct: 252 LSLRAILMIATAVAARLGDADIAAHQIVLSLWSLLAFALDAIAIAGQAIIGRYLGADDAQ 311
Query: 304 EAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGIS 363
A +EA + + A+ VL + L+ P V A+ L+IV ++
Sbjct: 312 GA----REACRRMVEWGVAVGVVLGLLV-VLSRPVFLPLFTGDSMVTDAALPALVIVAVA 366
Query: 364 EIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPG 423
+ G+ FVL G L GAGD P ++ L PA LL +P L
Sbjct: 367 QPVCGVVFVLDGVLMGAGD--GPYLAWAMLLTLAVFTPAALL-----VPTL--------- 410
Query: 424 FKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKW 458
G G+ A W M+L + WL + G+W
Sbjct: 411 ----GGGLTALWAAMTLMMAMRLVTLWLRTRSGRW 441
>dbj|BAB04605.1| (AP001510) unknown conserved protein [Bacillus halodurans]
Length = 454
Score = 136 bits (340), Expect = 4e-31
Identities = 109/463 (23%), Positives = 217/463 (46%), Gaps = 39/463 (8%)
Query: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHV-SSVALGAVGLGGQVSWFMFPIMMAIS 62
I KK+ +WP + N+ QT + D++ VG++ + ALGA+ + V + + ++ ++
Sbjct: 13 ITKKMVVFSWPIFLSNLLQTSYQITDSLWVGNLLGASALGALSISATVVFMVLSFIIGLN 72
Query: 63 TGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGL---FLGDEVLKIMGAKGE 119
TL ++++R G K +EA A + ++ F++G+ +L GL F +L+++G E
Sbjct: 73 GATLTVLSQRQGAK--DEAGLKASLNAFV-FVLGLLAILLGLIGYFSASSILQLLGTPEE 129
Query: 120 VLEIAYAYLRVLFLFYPIRFMGFAFF-SALRGAGDTKTPMKLNILMNVINAVLDYLLVFG 178
+L +A +YL++ F+ F G+ F + LR GD+++P++ + ++N +LD L++ G
Sbjct: 130 ILPLAESYLKINFIGILFLF-GYNFIGTVLRAMGDSRSPVRFIFIAVILNIILDPLMIAG 188
Query: 179 KFGFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTP 238
LG GAA+A+ + AF+ G+ ++ K + + + ++G P
Sbjct: 189 F----NLGIDGAAYATIVSQGTAFIYGL-IYSVRKAGVPFQIPYVPEKRYFFVLFKLGLP 243
Query: 239 TMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLG 298
L S +S+V FG+ A++ R++S+ +PA A + + GQN+G
Sbjct: 244 AGLSMITISAGVTAILSVVTSFGEEAVAGFGAAQRLDSLIMLPALTLGSAVNTIAGQNIG 303
Query: 299 AKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLI 358
A K E T K+ + + + + + + F+ +A + +Y+
Sbjct: 304 ANKWERVRATAKQGVMLIIAVTLIIGLITFIGAQFFIRLFVRD-----EATVAFGAMYIQ 358
Query: 359 IVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGP 418
+ LG+ FVL+G +R +G L + +S + R Y + F +++G
Sbjct: 359 TIAFFYPFLGINFVLNGIVRASGAMFPVLLLNIISFWILRYPLTYWMSDLFGERGIALG- 417
Query: 419 FTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKKI 461
GF F + + + G ++L G W+K+
Sbjct: 418 ---MGFAF------------VVSSLIATGYYFL----GNWRKV 441
>pir||H69837 conserved hypothetical protein yisQ - Bacillus subtilis
>gi|1934838|emb|CAB07959.1| (Z93940) unknown [Bacillus
subtilis] >gi|2145382|emb|CAA70645.1| (Y09476) YisQ
[Bacillus subtilis] >gi|2633417|emb|CAB12921.1| (Z99109)
alternate gene name: yucE~similar to hypothetical
proteins [Bacillus subtilis]
Length = 455
Score = 136 bits (338), Expect = 7e-31
Identities = 107/453 (23%), Positives = 199/453 (43%), Gaps = 26/453 (5%)
Query: 8 LWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLA 67
L++L WP + + DT+++ S ++ AVG+ Q+ + + I+TGT
Sbjct: 21 LFSLTWPIFIEVSLYMFMGNADTLMLSQYSDNSVAAVGVSNQILNLIIVMFSFIATGTTV 80
Query: 68 LVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAY 127
++++ +G + +EA +A S+ F I + + F +L +MG ++ A +
Sbjct: 81 IISQFLGSRQKKEAMEVAYVSIGANFFISLAISAVVFFAAVPLLHMMGLSDALMPDAKVF 140
Query: 128 LRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGP 187
L+V+ I+ + F + L+ G TK M + I MN++N +++++FG FGFP LG
Sbjct: 141 LQVVGGLSFIQALIMTFSAILKSYGYTKDTMFVTIGMNILNIAGNFVVIFGLFGFPVLGV 200
Query: 188 VGAAWASGIGITIAFLVGMYLFITNKLILKPVLD--LSLRFDIIEKILRIGTPTMLERGL 245
G A ++ I I L+ M + + ++ LK L + + + K+L+IG P+ E+
Sbjct: 201 AGVAMSTSIARVIG-LIAMIVIVNKRIQLKMSLKKVFHMHKEHLRKLLKIGIPSAGEQLS 259
Query: 246 FSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEA 305
++ + +A G AL+ I + S T L+G+ +G K+ + A
Sbjct: 260 YNLSQMIVTYFIAIMGAQALTTKVYTQNITMFILLFGTAISQGTQILIGRYIGGKQFDAA 319
Query: 306 ERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEI 365
++L +A + ++ +F L F P+ A SL + II+ E
Sbjct: 320 YERCMKSLYWALGIAAATSVLMTIFSKDLIGLFT--QSPDIIATASLLIAMTIIL---EP 374
Query: 366 PLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPGFK 425
++ +LR AGD K P+Y+ +S + AYL G
Sbjct: 375 GRSFNVIIINSLRAAGDAKFPVYMAMISMWGIGLPLAYLFGIHL---------------- 418
Query: 426 FPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKW 458
G G+ WI + +V L + ++ W
Sbjct: 419 --GFGLAGIWISFIADEWVRGILMYRRWRSRIW 449
>sp|P54181|YPNP_BACSU HYPOTHETICAL 48.5 KD PROTEIN IN ILVA 3'REGION
>gi|7474682|pir||D69939 conserved hypothetical protein
ypnP - Bacillus subtilis >gi|1256651|gb|AAA96645.1|
(L77246) 21% identity with the NADH-dehydrogenase
(ubiquinone) of Caenorhabditis elegans; putative
[Bacillus subtilis] >gi|2634591|emb|CAB14089.1| (Z99115)
similar to hypothetical proteins [Bacillus subtilis]
Length = 445
Score = 131 bits (327), Expect = 1e-29
Identities = 113/466 (24%), Positives = 214/466 (45%), Gaps = 39/466 (8%)
Query: 3 DIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHV-SSVALGAVGLGGQVSWFMFPIMMAI 61
++ K+L + P ++GN Q +D++ +G++ + ALGA + + + ++ +
Sbjct: 10 NVLKQLVLFSMPIMLGNALQVSFQFIDSLWIGNLLGAKALGAAAVSSTIVLTVLSFILGL 69
Query: 62 STGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVL 121
+ TL +++++ G+ + + + + + + I G FL + +L+++ ++
Sbjct: 70 NNATLTILSQQKGKDDIKGMASYINAFVVLLTGLSIGFGAAGFFLSELLLRLLKTPESMI 129
Query: 122 EIAYAYLRVLFLFYPIRFMGFAFFSA-LRGAGDTKTPMKLNILMNVINAVLDYLLVFGKF 180
+A YL++ F+ F G+ F S LR GD+KTP++ V+N VL L +
Sbjct: 130 PLAETYLQIQFIGILFLF-GYNFISTVLRALGDSKTPLRFIAFAVVLNTVLAPLFI---- 184
Query: 181 GFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTM 240
R+G GAA+++ + IAFL G++ I +KL+ + + +++ IL++G P
Sbjct: 185 SVFRMGIAGAAYSTILSQGIAFLYGLFYVIKHKLVPFSIPRMP-KWEESALILKLGIPAG 243
Query: 241 LERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAK 300
L+ + + +S+V +G +S R++SI +PA A +++ GQN+G
Sbjct: 244 LQMMVITGGMMAIMSVVNSYGDHVVSGFGAVQRLDSIITLPAMAAGTAVNSMAGQNIGIG 303
Query: 301 KPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDP---NYQAVKSLAVIYL 357
+ + + M +A ++ VF YL F+S D Q +K +A Y
Sbjct: 304 NEKRVGTIARLGVIAVISCMLVIAVMIWVFGKYLIRLFISEPDAVAFGEQYLKWIAFFYP 363
Query: 358 IIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIG 417
I G+ FVL+G +R AG L + +S + R
Sbjct: 364 FI--------GVNFVLNGIVRAAGAMLQVLVLNLISFWVLRY------------------ 397
Query: 418 PFTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKKIKI 463
PFT + G I IGMS F + F L ++ G+WK +K+
Sbjct: 398 PFTALFSAWLGQKGIGLGIGMSF-LFSSCAAF-LYYRYGRWKAMKL 441
>pir||G72220 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982278|gb|AAD36768.1|AE001810_7 (AE001810)
conserved hypothetical protein [Thermotoga maritima]
Length = 458
Score = 130 bits (323), Expect = 4e-29
Identities = 107/417 (25%), Positives = 193/417 (45%), Gaps = 22/417 (5%)
Query: 3 DIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIS 62
D RK + L+ P ++ + QT+ NL D + V + AL A+GL V + + I
Sbjct: 16 DPRKAIVKLSIPMMLAMLVQTIYNLADGIWVAGLGPYALAAIGLFFPVFMVIISLAAGIG 75
Query: 63 TGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLE 122
G ++V++++GE++ E A A S+ ++ +IG + L ++L GA+GE L
Sbjct: 76 VGASSVVSQKIGERDKEGADTAASVSILLSIVIGFLSIAVILPFISDILIFAGAQGETLR 135
Query: 123 IAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLD--YLLVFGKF 180
+A Y +L F P+ RG GD K M + +++N LD ++ VFG
Sbjct: 136 LALEYSVILVYFIPLIMFNNVANGVFRGEGDAKRAMVAITIGSLLNIGLDPVFIYVFG-- 193
Query: 181 GFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFD--IIEKILRIGTP 238
+G GAA+A+ + I ++ L+ Y K + L++D I+++IL+IG P
Sbjct: 194 ----MGIRGAAYATVVSIAVSSLLIAYWMFFKK---DTYVSFRLKWDGEILKRILKIGIP 246
Query: 239 TMLERGLFSFYNF-LYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNL 297
L + S + L V V G ++ R+ + +P G ++A +++ G
Sbjct: 247 ASLAQISMSVAIYVLNVFAVRSGGDYGVAVFTSAWRVINFGTVPLIGMAMAVTSVTGAAF 306
Query: 298 GAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPN---YQAVKSLAV 354
G + E+ E A+K+ A+ F +++F Y+ F + VK+L +
Sbjct: 307 GERNGEKLETAHLYAVKLGFFVGLAVMFTILIFAPYIARLFTYSQEGEKLYSDLVKALRI 366
Query: 355 IYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEI 411
+ L + G +P GM S +G G L VT + ++ +++ ++L F I
Sbjct: 367 LSLFLPG---VPFGM--FTSSMFQGVGQGLKSLIVTIMRTVIMQVVFSWLFVFVLRI 418
>dbj|BAB05882.1| (AP001514) unknown conserved protein in others [Bacillus
halodurans]
Length = 464
Score = 129 bits (322), Expect = 5e-29
Identities = 109/415 (26%), Positives = 189/415 (45%), Gaps = 33/415 (7%)
Query: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMM---- 59
I K L +L+ PA++G L N+VDT+ + S A+G G+ G FPIMM
Sbjct: 15 IPKLLRSLSIPAMIGMFVMALYNVVDTIFI----SYAVGIEGVAGVT--IAFPIMMIMMS 68
Query: 60 ---AISTGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGA 116
A+ G ++++RR+GE+ EEA+++ + + ++ + + L L++ GA
Sbjct: 69 MAGALGIGGASVISRRLGERRGEEANQVFGNILTVILVLSVIGFISAFTLLGPALQLFGA 128
Query: 117 KGEVLEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLV 176
A YL + L F FA + +R G+ M I+ V+N +LD L +
Sbjct: 129 TSVTQGYATDYLFPILLGSIFFFFAFAANNIIRSEGNATFAMVTMIVPAVLNILLDVLFI 188
Query: 177 FGKFGFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILK-PVLDLSLRFDIIEKILRI 235
FG +G +GA+ A+ I + + F+T K L DL ++ +I+++ +
Sbjct: 189 FGL----NMGVLGASIATVIAQASVTGLVLRYFLTGKSTLSLHWSDLRMKGSVIKEVCLV 244
Query: 236 GTPTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGL-----RIESIAYMPAFGFSIATS 290
G P +++ S S++ RFG S Y+G+ RI MP G A
Sbjct: 245 GLPAFVQQSSASLMMIAINSMLLRFG----SDFYVGVFGLVQRIMMFVMMPMMGIMQAMQ 300
Query: 291 ALVGQNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVK 350
+VG N GAK+ TV K+ T+F + +LM+FP L F + + V
Sbjct: 301 PIVGYNYGAKQYSRLRETVMLGFKVATIFSIGIFALLMLFPEALLRVFTADREVIQAGVS 360
Query: 351 SLAVIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLL 405
++ +++ + +G V G + G K L + S+S+ + ++P L+
Sbjct: 361 AMHILFCV-----TFLIGAQIVAGGLYQSLGKPKQAL-ILSLSRQIIFLIPLVLI 409
>sp|Q58119|Y709_METJA HYPOTHETICAL PROTEIN MJ0709 >gi|2128027|pir||E64388 conserved
hypothetical protein homolog MJ0709 - Methanococcus
jannaschii >gi|1591425|gb|AAB98703.1| (U67517) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 450
Score = 127 bits (316), Expect = 3e-28
Identities = 121/447 (27%), Positives = 211/447 (47%), Gaps = 26/447 (5%)
Query: 1 MSDIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMA 60
+ D +K + ++ P I+ +++ +LVD++ V + + AL AVG + ++ +
Sbjct: 8 LDDPKKAVIEVSKPIIVATFIESIYSLVDSIWVSGLGADALAAVGASFPILISIYAVSWG 67
Query: 61 ISTGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEV 120
+S G + +ARRVG KN EEA ++A ++ +A I GI ++ D + +MG G+
Sbjct: 68 LSIGISSGIARRVGAKNKEEADKVANHAIILALIAGILYIIAVYPNLDTLFSLMGTYGDC 127
Query: 121 LEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKF 180
+A Y +L L I + A + RG G+TK M +++ + N +LD + ++
Sbjct: 128 KSLAIKYSSILVLGTVIFTICDALYGIFRGEGNTKIVMIASVIGTLTNIILDPIFIY--- 184
Query: 181 GFPRLGPVGAAWASGIGITIAFLVGMY-LFITNKLILKPVLD-LSLRFDIIEKILRIGTP 238
LG GA++A+ I I I+ L+ Y LFI + L II ++R+G P
Sbjct: 185 -MLNLGISGASYATLIAIIISLLILAYELFIKKSCYVTVKLSKFKPDLKIIADLIRVGIP 243
Query: 239 TMLERGLFSFYNFLYVSIVARFGKIALSAHYIG-LRIESIAYMPAFGFSIATSALVGQNL 297
+ L + F+ SI+ G A Y G LRI ++P G + ++++G
Sbjct: 244 SALIEITVAVSFFIMTSIIMMVGDSRGLAVYTGALRITEFGFIPMLGLASGATSVIGATY 303
Query: 298 GAKKPEEAERTVKEALKM-TTMFMSAMAFVLMVFP--GYLTEPFLSHNDPNYQAVKSLAV 354
GA+ E+ + +K+ M + +A ++++ P YL + + + VK+L +
Sbjct: 304 GARSFEKLKTAYFYTIKIGVLMEIIIVALIMLLSPILAYLFTYTKTSMGIHEELVKALRI 363
Query: 355 IYLIIVGISEIPLGMTFVL--SGALRGAGDTKSPLYVTSVSKLLFRILPAYL----LGFG 408
+ L + L F+L S +G G + L ++ L+ I AYL LG G
Sbjct: 364 VPLYL-------LFTPFILTTSAMFQGIGKGEKSLIISIFRSLICHISYAYLFAVILGLG 416
Query: 409 -FEI-PELSIGPFTFPGFKFPGMGVIA 433
F I L +G FT F F GV+A
Sbjct: 417 MFGIYSGLVVGEFTAGIFAFL-FGVLA 442
>pir||B83476 probable transporter PA1361 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947303|gb|AAG04750.1|AE004565_9
(AE004565) probable transporter [Pseudomonas aeruginosa]
Length = 477
Score = 127 bits (315), Expect = 4e-28
Identities = 99/394 (25%), Positives = 178/394 (45%), Gaps = 20/394 (5%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
K+L TLA P ++ ++ T + VD ++ G S L AV LG + MF +M T
Sbjct: 19 KELLTLAAPIMIAQLATTAMGFVDAVMAGRASPHDLAAVALGNSIWIPMFLLMTGTLLAT 78
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAY 125
A VA+R G + + Q++++A +IG +L + +L +M + E++ +
Sbjct: 79 TAKVAQRHGAGDQPGTGPLVRQALWLALLIGPLSGAVLWWLSEPILGLMKVRPELIGPSL 138
Query: 126 AYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRL 185
YL+ + L +P + G G T+ M L I ++N ++Y L++G FG P++
Sbjct: 139 LYLKGIALGFPAAALYHVLRCYTNGLGRTRPSMVLGIGGLLLNIPINYALIYGHFGMPKM 198
Query: 186 GPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFD---------IIEKILRIG 236
G G WA+G + FL GM LF NK + L R++ ++ L IG
Sbjct: 199 GGPGCGWATGSVMWFMFL-GM-LFWVNKASIYRASQLFSRWEWPDRATIGPLVAVGLPIG 256
Query: 237 TPTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQN 296
E +FS + ++ + ++ H I L ++ +M + +A + VG N
Sbjct: 257 IAVFAESSIFS----VIALLIGGLDENVVAGHQIALNFSALVFMIPYSLGMAVTVRVGHN 312
Query: 297 LGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIY 356
LGA P +A + + A ++++ L E + P+ AV ++A
Sbjct: 313 LGAGLPRDARFAAGVGMAAALGYACVSASLMLL----LREQIAAMYSPD-PAVIAIAASL 367
Query: 357 LIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVT 390
++ + + + +GALRG DT+ + +T
Sbjct: 368 IVFSALFQFSDALQVTAAGALRGYQDTRVTMIMT 401
>gb|AAG19201.1| (AE005016) DNA damage-inducible protein; Dip2 [Halobacterium sp.
NRC-1]
Length = 489
Score = 126 bits (314), Expect = 5e-28
Identities = 125/460 (27%), Positives = 201/460 (43%), Gaps = 37/460 (8%)
Query: 11 LAWPAIMGNISQTLLNLVDTMIVGH-VSSVALGAVGLGGQVSWFMFPIMMAISTGTLALV 69
LAWP I+ I + + D +VG + S A+ VG G F I ++ GT+ALV
Sbjct: 48 LAWPRILTGIGRMSKSAADVAMVGAALGSAAITGVGYAGPFWGAAFSIGGGLAAGTIALV 107
Query: 70 ARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYA--Y 127
++R +A + S + +P+ + LF I EIA+ Y
Sbjct: 108 SQRFSADEIADAGQALRSSAALTVAATLPIAV--LFYSHPAALIGLLTDRQAEIAFGADY 165
Query: 128 LRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGP 187
LRV+ P + AL GA D T M L + N L+ + +FG G+ +G
Sbjct: 166 LRVVAFGVPFAGLNLIGSRALIGADDAYTAMVLRGGGALANIGLNGVFIFG-LGWGVVGA 224
Query: 188 VGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRF-----DIIEKILRIGTPTMLE 242
S + +T AF+VG+ + P + +S+R D I+ IG P +
Sbjct: 225 GLGTVLSNVVVTTAFVVGLSRGRLPAVGAFP-MTVSVRGAYWVRDDCWDIVTIGLPVVGR 283
Query: 243 RGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKP 302
+++ F ++ ++ FG+ +A+ I R+ I P +GF +A S+LVGQ LG +
Sbjct: 284 NSVWTLARFPLLAFMSLFGQPVAAAYIIVRRVFGIMNTPGWGFGLAASSLVGQELGQGRE 343
Query: 303 EEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFL-SHNDPNYQAVKSLAVIYLIIVG 361
A +E + + A V+ F G + F+ S +DP+ +AV + +
Sbjct: 344 STAAAYGREITLYSVVMYVMFAGVVCAFAGQIVGVFVDSASDPSV----PIAVTMVYVAA 399
Query: 362 ISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTF 421
+ IP G+ ++GAL GDT+ P Y +V L LP LG T
Sbjct: 400 AAVIPQGIGATVAGALDATGDTRWPFYSRAVGML--GALPLVYLG------------ATT 445
Query: 422 PGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKKI 461
P +G+ ++ + ET V A + +L F+ GKWK I
Sbjct: 446 P------LGLYGIYLSLFSETCVPAVVNYLRFRSGKWKAI 479
>gb|AAG20342.1| (AE005107) DNA damage-inducible protein; DinF [Halobacterium sp.
NRC-1]
Length = 469
Score = 125 bits (310), Expect = 1e-27
Identities = 109/418 (26%), Positives = 182/418 (43%), Gaps = 19/418 (4%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
+ L L P ++ + +VD +G VS A+ AVGL + + + G
Sbjct: 16 RALLVLTAPLVVQQYVVVVQQIVDVFWLGRVSRNAVSAVGLVAPLIGLLALATSVATIGC 75
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFG---LFLGDEVLKIMGAKGEVLE 122
LVA+ VG ++A+ + ++G +L L+L +++ ++ + V++
Sbjct: 76 RVLVAQHVGA---DDAAAARSTGFHATVLVGAANLLLAVVVLWLAPDLVGVLLSDEAVIQ 132
Query: 123 IAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKF-- 180
+ YL V + M S G GD++ M +N++ + N VLD LV G
Sbjct: 133 LGATYLTVTTVGRVFGGMSDTIESGFVGWGDSRMSMLINVVAVLTNVVLDPFLVVGWQLP 192
Query: 181 GFPRLGPVGAAWASGIGITIAFLVGMY-LFITNKLILKPVLDLSLRFDIIEKILRIGTPT 239
GF G GAA A+ IG F V + L + + DL + D + +L +G P
Sbjct: 193 GFAGYGIFGAALATAIGYVAGFTVAVAGLGVDSTSFTIGRADLGVSRDTVRSLLSVGVPH 252
Query: 240 MLERGLFSFYNFLYVSIVARF-GKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLG 298
+ L V+IVA G L+A+ IG RI ++A++PA A S++VGQN+G
Sbjct: 253 AGQEAGRQIARLLVVAIVAGVAGSAGLAAYTIGARIATVAFVPAAAVGSAVSSIVGQNVG 312
Query: 299 AKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVK-SLAVIYL 357
A P+ A R A TT M+ + P + F P + ++ + V YL
Sbjct: 313 AGNPDRATRATWLAAGATTAGMAVLGVAQYSSPATIVSVFA----PTFSGIELTYTVAYL 368
Query: 358 IIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVS----KLLFRILPAYLLGFGFEI 411
I+ + G+ + + G GAG T + T + +L L AY++ F +
Sbjct: 369 QILAVGYWAFGLIYPIQGGFNGAGKTTVSMVATLLQYWGVRLPVAALGAYVVVFSVPV 426
>gi|11499066 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451040|pir||F69433 conserved hypothetical protein
AF1471 - Archaeoglobus fulgidus
>gi|2649097|gb|AAB89777.1| (AE001001) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 447
Score = 123 bits (306), Expect = 4e-27
Identities = 114/420 (27%), Positives = 201/420 (47%), Gaps = 29/420 (6%)
Query: 3 DIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIS 62
D +K + L+ P ++ N+ TL NLVD + V + AL AVGL + + I +S
Sbjct: 10 DPKKAILKLSAPMVVSNLIFTLYNLVDGIWVAGLGPDALSAVGLFFPIFFVFIAISFGLS 69
Query: 63 TGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLE 122
G + V+RR+G K ++ A A ++ + ++ IP+ L +FL V+ +GA GE+L
Sbjct: 70 VGANSAVSRRIGAKRYDAACVAATLAVAMGILVSIPMTLSVVFLNG-VMVFLGADGEILR 128
Query: 123 IAYAYLRVLFLFYPIRFMGFAFFSA--LRGAGDTKTPMKLNILMNVINAVLDYLLVFGKF 180
+A Y ++ L F+ F+ SA L G G+ + M N +++N VLD + ++
Sbjct: 129 LAVDYGSIMVLGSV--FLVFSNVSAGILNGEGNARMAMYANAAGSLLNMVLDPIFIY-LL 185
Query: 181 GFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVL---DLSLRFDIIEKILRIGT 237
G+ G GAA AS I + ++ +V + F++ + ++ + +L FD+ LR+G
Sbjct: 186 GY---GIAGAAIASVISMALSSIVFSFWFLSGRSYVRFRVAGWNLPTVFDL----LRVGM 238
Query: 238 PTMLERGLFSFYNFLYVSIVARFG-KIALSAHYIGLRIESIAYMPAFGFSIATSALVGQN 296
P L S L +V G L+A+ R+ ++P FG S A +A+ G
Sbjct: 239 PASLSMLTMSVAFMLINRVVIETGGSEGLAAYTSAWRLIQFGFVPLFGVSAALTAVSGAA 298
Query: 297 LGAKKPEEAERTVKEALKMTTMFMSAM-AFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVI 355
GA+ P R + E+L T + A+ A +L + + + L AV ++
Sbjct: 299 YGARNP----RKIGESLNYTVKLLLAVDAAILALMVAFAPQIALIFTYTEVSAVMYEEIV 354
Query: 356 YLIIVGISEI---PLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLG--FGFE 410
I + + PLG++ S +G G + +T + ++F++ Y+L FGF+
Sbjct: 355 RTIRIAAFVLLFAPLGVSS--SAVFQGMGKGERSFAITVLRAIVFQVSLCYVLAVPFGFD 412
>gb|AAG10466.1|AF279106_28 (AF279106) predicted cation efflux pump [uncultured proteobacterium
EBAC31A08]
Length = 448
Score = 123 bits (305), Expect = 5e-27
Identities = 89/353 (25%), Positives = 160/353 (45%), Gaps = 9/353 (2%)
Query: 60 AISTGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGE 119
A+ + +AR +G + A ++ S+YI+ + ++ G+ +L+I+G G
Sbjct: 70 ALGGAVTSSIARSLGAADKPRAEKLLWHSLYISCFGALAFLIIFFIFGEPLLRILGGTGA 129
Query: 120 VLEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGK 179
+LE + AY V L + ++ + +ALRG GD + P L ++ I + G
Sbjct: 130 LLEESLAYCFVYLLGAIVVWLSGSLTAALRGMGDMQFPAVLTVICAGIQVFFSAGFILGS 189
Query: 180 FGFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLD-LSLRFDIIEKILRIGTP 238
FG P+LG VG+AW+ + LV + + ++ L L++ ++ E I + P
Sbjct: 190 FGLPKLGLVGSAWSMIVTSGFMALVTLIKISSPSSPVRLKLKRLTIERELFEDIFSVALP 249
Query: 239 TMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLG 298
L + L ++ +FG A++ + IG R+E + FG A +A+VG N+G
Sbjct: 250 ASLSPIMTVATVLLLTGLIGQFGTSAIAGYGIGSRVEFLLIPIVFGIGTAMTAMVGTNIG 309
Query: 299 AKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLI 358
AK E AE+ + + + L + P F S DP V Y+
Sbjct: 310 AKNIERAEKIGMVGATTAGLLSAVIGLALALTPNLWISIFTS--DPETLLVTKQ---YIQ 364
Query: 359 IVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRIL---PAYLLGFG 408
I+G+ + G L A +GA K P+ +T++ ++F ++ Y L +G
Sbjct: 365 ILGVCYVFQGYGLSLYFASQGANAMKWPIIITAIRLIVFSVIALVAVYWLSYG 417
>gb|AAG27731.1|AF312031_1 (AF312031) multi-drug efflux transporter [Burkholderia
vietnamiensis]
Length = 462
Score = 122 bits (302), Expect = 1e-26
Identities = 101/378 (26%), Positives = 169/378 (43%), Gaps = 2/378 (0%)
Query: 11 LAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLALVA 70
LA P + +SQ +++ DT+++G + +L A GLG + + ++ + + VA
Sbjct: 26 LAAPLAIAQLSQMAMSVTDTVLLGSLGPDSLAAGGLGANFFFVIVTVLQGVLSSVSVSVA 85
Query: 71 RRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRV 130
G + I ++ ++ IP ++ L L + +L + + + Y +
Sbjct: 86 HARGAQAEHRVPHIYWTGFVLSVLLAIPAVV-ALSLSEPLLLMFHEPPTLAQHVGEYTGI 144
Query: 131 LFLFYPIRFMGFAFFSA-LRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPVG 189
L +G A L G + + ++I +NAVL+Y L+ G +G PRLG +G
Sbjct: 145 LRFAALGSLIGVGLMRAFLPAIGAARRLLWVSIGGIGVNAVLNYGLIHGAYGLPRLGFLG 204
Query: 190 AAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTMLERGLFSFY 249
+A A+ I I + ++L V + ++ +++ IG P + G+ S
Sbjct: 205 SAVATTITIWLTAFALIWLLHGRARFRHFVSAARPKLPMMGELIGIGWPVAITYGVESTL 264
Query: 250 NFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAERTV 309
V G AL+AH I L + S+A+M A + VG +GA P A
Sbjct: 265 FLATGLTVGVLGATALAAHQIALNVASVAFMVPLAIGQAANVRVGYWIGAGDPVAARHAG 324
Query: 310 KEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEIPLGM 369
AL + FMS VL++ P + +L +DP A SLA L I + +I GM
Sbjct: 325 FVALGLGVAFMSLSGLVLILAPHAIVGLYLHLDDPANAATVSLAASLLGIAAVFQIVDGM 384
Query: 370 TFVLSGALRGAGDTKSPL 387
V SGALRG DT+ P+
Sbjct: 385 QTVGSGALRGLRDTRIPM 402
>sp|P45272|YDHE_HAEIN HYPOTHETICAL PROTEIN HI1612 >gi|1074865|pir||B64173 hypothetical
protein HI1612 - Haemophilus influenzae (strain Rd KW20)
>gi|1574453|gb|AAC23256.1| (U32834) conserved
hypothetical transmembrane protein [Haemophilus
influenzae Rd]
Length = 464
Score = 121 bits (301), Expect = 2e-26
Identities = 103/413 (24%), Positives = 186/413 (44%), Gaps = 26/413 (6%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
KKL ++ P ++ I+Q + L DT++ G VSS + A+ +G + W P+M
Sbjct: 14 KKLIKISLPILLAQIAQNSMGLADTIMAGRVSSTDMAAISIGASI-WM--PLMFFGQGLL 70
Query: 66 LAL---VARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLE 122
LAL ++ G + Q +++ + IP+ L ++ + L+ M + ++ +
Sbjct: 71 LALPPTISYLNGSGQHHRIAHQVRQGIWLVLGVSIPLGLL-IYFCEIPLQYMQMESKMSD 129
Query: 123 IAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGF 182
+A YL + P M F G TK M + L +IN L+Y+ ++GKFG
Sbjct: 130 LARDYLHAMLWGLPAYLMLINFRCLNDGIEKTKPAMVITFLGLLINIPLNYIFIYGKFGM 189
Query: 183 PRLGPVGAAWASGIGITIAFLVGMYLFITNK-----LILKPVLDLSLRFDIIEKILRIGT 237
P G VG A+ I L+ ++ TN + ++++ ++K+LR+G
Sbjct: 190 PAFGAVGCGIATAIVNWAMCLMMIFYSYTNTQERSLKVFSQLIEMP-NPKTLKKLLRLGL 248
Query: 238 PTML----ERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALV 293
P + E L++ + + ++ G +++H I L S +M +AT+ LV
Sbjct: 249 PIAIAICCEVALYALTSLM----LSPLGATIVASHQITLNTSSFIFMFPMSIGMATTILV 304
Query: 294 GQNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLA 353
GQ LGA P+ A++ AL + A + + F + F++ + V ++A
Sbjct: 305 GQALGAGSPQNAKKIGYAALLLGLTVTIVTALITIFFRYEIASIFVTD-----EIVIAMA 359
Query: 354 VIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLG 406
L+ + + + V+ G LRG DTK LY+T S + + Y LG
Sbjct: 360 ANLLLFAALYQFSDTIQMVVGGILRGYKDTKVILYITLFSYWVIGVPLGYTLG 412
>dbj|BAB04579.1| (AP001510) unknown conserved protein [Bacillus halodurans]
Length = 458
Score = 121 bits (301), Expect = 2e-26
Identities = 102/401 (25%), Positives = 173/401 (42%), Gaps = 20/401 (4%)
Query: 14 PAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLALVARRV 73
P ++ I +N DT++ G + L V +G + +F + + ++A+ +
Sbjct: 20 PILITQIGLYAMNFFDTVMSGQAGANDLAGVAIGSSLWVPVFTGLNGVLLALTPIIAQSI 79
Query: 74 GEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRVLFL 133
G + ++ + Q +Y++ I I V+L G + D +L M + EV IA YL L
Sbjct: 80 GAEKRDDVPYVFLQGLYLSIAISIAVILIGAVVLDPILSAMSLEDEVGRIAKEYLIGLAF 139
Query: 134 FYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPVGAAWA 193
F+ + G+T+ M + +L IN +Y+L+FGK GFPRLG VGA +A
Sbjct: 140 GIVPLFIYTTIRCLIDSLGETRVTMFITLLSLPINIFFNYVLIFGKLGFPRLGGVGAGYA 199
Query: 194 SGIGITIAFLVGMYLFI-----TNKLILKPVLDLSLR--FDIIEKILRIGTPTMLERGLF 246
S I V + + + T+ + K + +SL+ +I+ L IG E +F
Sbjct: 200 SAITYWFILAVAIVVVVKVRPFTDFQLFKKLYHVSLKKWKEILLLGLPIGFTIFFETSIF 259
Query: 247 SFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAE 306
+ L ++ F ++AH + S YM + + VG +GAK+ E+A
Sbjct: 260 AAVTLL----MSTFDTATIAAHQAAVNFASFLYMIPLSIAFTLTIAVGYEVGAKRVEDA- 314
Query: 307 RTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLS--HNDPNYQAVKSLAVIYLIIVGISE 364
++ ++ F M V V L P S ND + +IY I +S+
Sbjct: 315 ---RQYSRLGITFALIMGLVAGVIIYVLRAPVASLYTNDSQVAWLIQQFLIYSIFFQLSD 371
Query: 365 IPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLL 405
+ + G LRG D P + VS + + YLL
Sbjct: 372 ---ALATPIQGVLRGHKDVNVPFVMALVSFWIIGLPTGYLL 409
>pir||F69906 conserved hypothetical protein yojI - Bacillus subtilis
>gi|2634337|emb|CAB13836.1| (Z99114) similar to
hypothetical proteins [Bacillus subtilis]
>gi|3169325|gb|AAC17857.1| (AF026147) YojI [Bacillus
subtilis]
Length = 452
Score = 117 bits (291), Expect = 2e-25
Identities = 108/463 (23%), Positives = 199/463 (42%), Gaps = 38/463 (8%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
K+L + P + +L+ +DT++ G VS L V +G + ++ + I
Sbjct: 12 KQLLHILIPIFITQAGLSLITFLDTVMSGKVSPADLAGVAIGSSLWTPVYTGLAGILMAV 71
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAY 125
+VA+ +G + ++ Q++Y+A ++ I V++ G D +L + V +IA
Sbjct: 72 TPIVAQLLGAEKKQKIPFTVLQAVYVAALLSIAVLVIGYAAVDLILGRLNLDIHVHQIAK 131
Query: 126 AYLRVLFL-FYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPR 184
+L L L +P+ F+ S + G T+ M + + IN VL+Y+ +FGKFG P
Sbjct: 132 HFLGFLSLGIFPL-FVYTVLRSFIDSLGKTRVTMMITLSSLPINFVLNYVFIFGKFGMPA 190
Query: 185 LGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSL---RFDIIEKILRIGTP--- 238
LG VGA AS + ++ ++ N + + L++ + + +L+IG P
Sbjct: 191 LGGVGAGLASALTYWCICIISFFIIHKNAPFSEYGIFLTMYKFSWKACKNLLKIGLPIGF 250
Query: 239 -TMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNL 297
E +F+ L ++ F + +++H + S+ YM S+A + +VG
Sbjct: 251 AVFFETSIFAAVTLL----MSHFHTVTIASHQAAMNFASLLYMLPLSVSMALTIVVGFEA 306
Query: 298 GAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYL 357
GA + ++A + M F A +++F + + S DP+ + +IY
Sbjct: 307 GAARFKDARSYSLIGIMMAIGFSLFTAACILLFREQIAGMYTS--DPDVLRLTQHFLIYA 364
Query: 358 IIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIG 417
+ +S+ + + GALRG D L VS + + Y++G
Sbjct: 365 LFFQLSD---AVAAPIQGALRGYKDVNYTLAAAFVSYWVIGLPVGYMVG----------- 410
Query: 418 PFTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKK 460
F +G WIG L + AG L F+ K +K
Sbjct: 411 -------TFTSLGAFGYWIG--LIAGLAAGAVGLFFRLAKLQK 444
>pir||B81410 probable integral membrane protein Cj0619 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968086|emb|CAB75255.1| (AL139075) putative integral
membrane protein [Campylobacter jejuni]
Length = 438
Score = 116 bits (289), Expect = 4e-25
Identities = 107/461 (23%), Positives = 203/461 (43%), Gaps = 30/461 (6%)
Query: 1 MSDIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMA 60
M+ + L L++P +S+ L +++T +V H S+ +GA+G G Q+ I
Sbjct: 1 MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAMGAGNQILDLFITIFSF 60
Query: 61 ISTGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEV 120
+S G L+A+ +G K+ A ++ QS+++ ++G + L+ G+ +L ++ E+
Sbjct: 61 LSVGCSVLIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVLILWHGEYLLYLLKIPQEL 120
Query: 121 LEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKF 180
L+ + YL +L + +G + +R M + LM+++ +Y ++ +
Sbjct: 121 LKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFIGFLMDIVVICGNYYVL--HY 178
Query: 181 GFPRLGPVGAAWASGIGITIAFLVGMY--LFITNKLILKPVLDLSLRFDIIEKILRIGTP 238
L VG S I I +V ++ LF K+ LK + L ++++K+L IG
Sbjct: 179 TKSELFGVG---LSNIFARIVAIVALFAILFYKLKIHLKIKEMIKLEKEVLKKVLNIGGF 235
Query: 239 TMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLG 298
+ E L+ + + VA G+ +LS I +I + + SIA +VG+ +G
Sbjct: 236 SAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIMLIGQAISIANEIIVGKLIG 295
Query: 299 AKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLI 358
A+ A + AL + S +A L+ F YL + F + +K+L +
Sbjct: 296 ARYENIAYKHAWRAL-----YFSVIASALVAFLNYLCQDFTMQILGLKEELKNLMIPLFA 350
Query: 359 IVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGP 418
+ EI V+ +LR +GD K P + V + + Y+L F F
Sbjct: 351 LSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLPVGYVLCFHF--------- 401
Query: 419 FTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWK 459
+G++ WIG + F+ + +K KW+
Sbjct: 402 ---------NLGILGVWIGFCADEFLRGMVNSYRWKSKKWQ 433
>pir||C81156 conserved hypothetical protein NMB0812 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226046|gb|AAF41225.1| (AE002434) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 459
Score = 112 bits (278), Expect = 8e-24
Identities = 106/424 (25%), Positives = 182/424 (42%), Gaps = 42/424 (9%)
Query: 8 LWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLA 67
L TLA P ++ ++Q + VDT++ G L AV LG ++ M I
Sbjct: 20 LTTLALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFATVYITFMGIMAALNP 79
Query: 68 LVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAK---------- 117
++A+ G +E Q ++ FGLFLG + +M A
Sbjct: 80 MIAQLYGAGKTDEVGETGRQGIW-----------FGLFLGVFGMVLMWAAITPFRNWLTL 128
Query: 118 GEVLEIAYA-YLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLV 176
+ +E A Y+ L P + A + + M ++ V+N L+Y+ V
Sbjct: 129 SDYVEGTMAQYMLFTSLAMPAAMVHRALHAYTSSLNRPRLIMLVSFAAFVLNVPLNYIFV 188
Query: 177 FGKFGFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFD-----IIEK 231
+GKFG P LG G A+ + + + ++++I + +P L+ +F + ++
Sbjct: 189 YGKFGMPALGGAGCGLAT-MAVFWFSALALWIYIAKENFFRP-FGLTAKFGKPDWAVFKQ 246
Query: 232 ILRIGTPT----MLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSI 287
I +IG P LE FSF FL +A FG+ ++A +G+ + I YM
Sbjct: 247 IWKIGAPIGLSYFLEASAFSFIVFL----IAPFGEDYVAAQQVGISLSGILYMIPQSVGS 302
Query: 288 ATSALVGQNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQ 347
A + +G +LG ++ A +L + M L++F L + +NDP
Sbjct: 303 AGTVRIGFSLGRREFSRARYISGVSLVLGWMLAVITVLSLVLFRSPLVSMY--NNDP--- 357
Query: 348 AVKSLAVIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGF 407
AV S+A L+ G+ + + S ALRG TK P+++ + + +LP YLL +
Sbjct: 358 AVLSIAATVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAY 417
Query: 408 GFEI 411
F +
Sbjct: 418 RFNM 421
>sp|Q55364|Y896_SYNY3 HYPOTHETICAL 49.7 KDA PROTEIN SLR0896 >gi|7449158|pir||S75711
hypothetical protein slr0896 - Synechocystis sp. (strain
PCC 6803) >gi|1001206|dbj|BAA10446.1| (D64003)
hypothetical protein [Synechocystis sp.]
Length = 461
Score = 112 bits (277), Expect = 1e-23
Identities = 102/410 (24%), Positives = 178/410 (42%), Gaps = 24/410 (5%)
Query: 11 LAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLALVA 70
LA P ++Q VDT+++G + L A GL + + + +G LVA
Sbjct: 20 LAVPLAGAQMAQAATGFVDTVMMGWLGQDVLAAGGLATMIFMAFMMTGVGLISGVSPLVA 79
Query: 71 RRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRV 130
G ++ Q ++I ++ IP MLF L V+ G + ++ +YL V
Sbjct: 80 EAYGAGQTRRIGQLTRQGLWIVLLLSIPGMLFITHLNG-VMHWSGQADTTIILSDSYLNV 138
Query: 131 LF--LFYPIRFMGFAFFSALRGA----GDTKTPMKLNILMNVINAVLDYLLVFGKFGFPR 184
+ LF I F + LRG + M + I + N + +Y L FGK+GFP
Sbjct: 139 MAWGLFPAIAF------ATLRGCIIALSQARPIMLIVIAATLFNILGNYGLGFGKWGFPA 192
Query: 185 LGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRF---DIIEKILRIGTP--- 238
LG G A AS I FL + + +K + + L SL I++++L +G P
Sbjct: 193 LGITGLAIASISAHWIMFLSLLVYMLWHKPLHQYSLFDSLHHLKPRILQQLLWVGGPIGI 252
Query: 239 -TMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNL 297
+LE GL+ +F + G L+AH + + + +M S A + VGQ
Sbjct: 253 AAVLEYGLYLTASFF----MGALGTPILAAHQVVSQTVLVLFMVPLAMSYAATVRVGQWF 308
Query: 298 GAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYL 357
G + + + ++ + +FM L+ +P + +L NDP ++ + +
Sbjct: 309 GQQHWPQIRQAALVSIGLAVLFMLTAGIALLAYPQQIIGLYLDLNDPANGEALNVGISIM 368
Query: 358 IIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGF 407
I + G+ +G L+G DT+ P+ + +++ + +YLLGF
Sbjct: 369 KIAAFGLVLDGLQRTANGVLQGLQDTRIPMVLGTIAYWGIGLTASYLLGF 418
>pir||A82984 hypothetical protein PA5294 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951609|gb|AAG08679.1|AE004942_2
(AE004942) hypothetical protein [Pseudomonas aeruginosa]
Length = 488
Score = 112 bits (277), Expect = 1e-23
Identities = 116/421 (27%), Positives = 189/421 (44%), Gaps = 36/421 (8%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
K + LA P I ++ + DT+++G + AL A GLG F+ + +
Sbjct: 10 KAILRLAGPLIAAQLAYVAMVFTDTVMMGKLGPDALAAGGLGAVSYAFVSTFCVGVVAAV 69
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGD--EVLKIMGAKGEVLEI 123
LVA R G + A+ A +++ + + GL L + +L + G + ++
Sbjct: 70 GNLVAIRHGCDDAAGAAAAARSGLWVGAALALAA---GLLLWNLRPLLLVFGQAPQTVDG 126
Query: 124 AYAYLRVLFLFYPIRFMGFAFFSALRG---AGDTKTP-MKLNILMNVINAVLDYLLVFGK 179
A +L L P G+ F LRG A D P M +++L + N L+Y + G
Sbjct: 127 AMQFLHSLTFALP----GYMAFMVLRGFTSAIDRAGPVMAISVLGALANLALNYSFIEGL 182
Query: 180 FGFPRLGPVGAAWASGIGITIAFLVG-MYLFITNKLILKPVL-DLSL-------RFDIIE 230
FG PRLG +GIG+ A ++ M L + + L+P + SL + ++E
Sbjct: 183 FGLPRLG------LAGIGLVTALVMNCMPLLLALYIRLQPAYAEYSLLRGLGRPQRAMVE 236
Query: 231 KILRIGTPT----MLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFS 286
+ILR+G P +E G+F+ L + I+ G AL+AH I ++ +A+M G S
Sbjct: 237 EILRLGLPIGGTYAVESGMFTVAT-LCMGII---GDHALAAHQIAIQAVYVAFMVPVGLS 292
Query: 287 IATSALVGQNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNY 346
AT+ +GQ+ GA + EA R + + + M A + P + FL + P
Sbjct: 293 YATTYRIGQHFGAGRLLEARRAGRVGIGFGALCMLLFAGLFWWMPEAIIGLFLDRDAPAN 352
Query: 347 QAVKSLAVIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLG 406
+ V ++AV L I E+ G V GA+RG D ++ V L + A LL
Sbjct: 353 REVAAMAVSLLAIAAWFELFDGTQNVAMGAIRGLKDARTTFLVGLACYWLVGVPLACLLA 412
Query: 407 F 407
F
Sbjct: 413 F 413
>pir||D81950 probable transmembrane efflux protein NMA1022 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379724|emb|CAB84291.1| (AL162754) putative
transmembrane efflux protein [Neisseria meningitidis
Z2491]
Length = 459
Score = 110 bits (272), Expect = 4e-23
Identities = 100/417 (23%), Positives = 179/417 (41%), Gaps = 28/417 (6%)
Query: 8 LWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLA 67
L LA P ++ ++Q + VDT++ G L AV LG ++ M I
Sbjct: 20 LTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFATVYITFMGIMAALNP 79
Query: 68 LVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAY 127
++A+ G +E Q ++ +G+ FG+ L + + +
Sbjct: 80 MIAQLYGAGKTDEVGETGRQGIWFGLFLGV----FGMVLMWAAITPFRNWLTLSDYVEGT 135
Query: 128 LRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMN----VINAVLDYLLVFGKFGFP 183
+ LF + AL + +L +L++ V+N L+Y+ V+GKFG P
Sbjct: 136 MAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGMP 195
Query: 184 RLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFD-----IIEKILRIGTP 238
LG G A+ + + + ++++I + +P L+ +F + ++I +IG P
Sbjct: 196 ALGGAGCGLAT-MAVFWFSALALWIYIAKENFFRP-FGLTAKFGKPDWAVFKQIWKIGAP 253
Query: 239 T----MLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVG 294
LE FSF FL +A FG+ ++A +G+ + I YM A + +G
Sbjct: 254 IGLSYFLEASAFSFIVFL----IAPFGEDYVAAQQVGISLSGILYMIPQSVGSAGTVRIG 309
Query: 295 QNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAV 354
+LG ++ A +L M L++F L + +NDP AV S+A
Sbjct: 310 FSLGRREFSRARYISGVSLVSGWMLAVITVLSLVLFRSPLVSMY--NNDP---AVLSIAA 364
Query: 355 IYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEI 411
L+ G+ + + S ALRG TK P+++ + + +LP YLL + F++
Sbjct: 365 TVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDM 421
>sp|P37340|YDHE_ECOLI HYPOTHETICAL 49.4 KDA PROTEIN IN RIBC-PYKF INTERGENIC REGION
>gi|1742737|dbj|BAA15430.1| (D90809) ORF_ID:o319#7;
similar to [SwissProt Accession Number P37340]
[Escherichia coli] >gi|1742747|dbj|BAA15439.1| (D90810)
ORF_ID:o319#7; similar to [SwissProt Accession Number
P37340] [Escherichia coli]
Length = 457
Score = 109 bits (271), Expect = 5e-23
Identities = 108/445 (24%), Positives = 196/445 (43%), Gaps = 46/445 (10%)
Query: 8 LWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSW-----FMFPIMMAIS 62
L LA P I+ I+QT + VDT++ G S+ + AV +G + W F +++A++
Sbjct: 11 LLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSI-WLPAILFGHGLLLALT 69
Query: 63 TGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLE 122
++A+ G E + Q ++A + + +ML G + + + +
Sbjct: 70 P----VIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALAD 125
Query: 123 IAYAYLRVLFLFYPIRFMGFAFFSALR----GAGDTKTPMKLNILMNVINAVLDYLLVFG 178
A YLR L P G+ FF R G TK M + + ++N ++Y+ ++G
Sbjct: 126 KAVGYLRALLWGAP----GYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYG 181
Query: 179 KFGFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDL--SLRFD--IIEKILR 234
FG P LG VG A+ + FL M +I ++ + + + + D +++++++
Sbjct: 182 HFGMPELGGVGCGVATAAVYWVMFL-AMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQ 240
Query: 235 IGTPTMLERGLFSFYNFLYVS-IVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALV 293
+G P L F F V+ +V+ G + ++ H I L S+ ++ + A + V
Sbjct: 241 LGLPIALAL-FFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRV 299
Query: 294 GQNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPF-LSHNDPNYQAVKSL 352
G LG +A+ + L M MA + +F L E L +ND V +L
Sbjct: 300 GYRLGQGSTLDAQTAARTGL----MVGVCMATLTAIFTVSLREQIALLYND--NPEVVTL 353
Query: 353 AVIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIP 412
A +++ + +I + + SG LRG DT+S Y+T + + + Y+L +
Sbjct: 354 AAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILA----LT 409
Query: 413 ELSIGPFTFPGFKFPGMGVIAAWIG 437
+L + P MG WIG
Sbjct: 410 DLVVEP----------MGPAGFWIG 424
>dbj|BAB07764.1| (AP001520) unknown conserved protein in others [Bacillus
halodurans]
Length = 447
Score = 109 bits (271), Expect = 5e-23
Identities = 95/406 (23%), Positives = 179/406 (43%), Gaps = 20/406 (4%)
Query: 8 LWTLAWPAIMGNISQTLLNLVDTMIVG-HVSSVALGAVGLGGQVSWFMFPIMMAISTGTL 66
L A P + + ++ +VD M + +V + AL AV + + + I + + TG
Sbjct: 16 LLAYAAPTMALMLFMSIYTMVDGMFIARYVGATALSAVNIFFPIYGLIIAIALMLGTGAN 75
Query: 67 ALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKG--EVLEIA 124
A++A+++GE N EEA + ++G+ + +FGL L + +L ++GA E+ +
Sbjct: 76 AIIAKKIGENNEEEAKENFTFIVICGAVLGLVITVFGLLLMEPILLMLGAGATEELFDFT 135
Query: 125 YAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPR 184
Y Y +++ P + F + AG + + ++ V N VLDY+ + +
Sbjct: 136 YTYAKIILCTSPFMILQMLFQNFFVTAGKPNLGLTITVVGGVANIVLDYVFIV----LLQ 191
Query: 185 LGPVGAAWASGIGITIAFLVGMYLFITNK----LILKPVLDLSLRFDIIEKILRIGTPTM 240
+G GA A+ IGI I G FI NK +KP +D + ++ + G+ M
Sbjct: 192 MGIAGAGIATAIGIFIPAAYGFVYFIYNKESGLHFVKPKVDGKV---LLNSCIN-GSSEM 247
Query: 241 LERGLFSFYNFLY-VSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGA 299
+ S F + + ++ G ++A I L + I + G+S + ++ N G+
Sbjct: 248 VSNLASSIVTFAFNLLMIKHLGVDGVAAITIMLYVMFILSSISMGYSAGVAPIISYNYGS 307
Query: 300 KKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLII 359
K + +R +L + + M V M+F Y F+ P AV +A+ L I
Sbjct: 308 KNSSQLKRVFNYSLLIIVIGSVTMYGVSMMFGAY----FIQFMAPEGSAVYHIAIEGLNI 363
Query: 360 VGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLL 405
IS + +G S + K ++ + L+F + ++L
Sbjct: 364 FSISFLFMGFNIFSSMVFTAFSNGKISAAISFLRTLVFVLASLWIL 409
>pir||H82186 probable multidrug resistance protein NorM VC1540 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656046|gb|AAF94694.1| (AE004232) multidrug
resistance protein NorM, putative [Vibrio cholerae]
Length = 461
Score = 109 bits (269), Expect = 9e-23
Identities = 101/439 (23%), Positives = 185/439 (42%), Gaps = 21/439 (4%)
Query: 11 LAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGTLALVA 70
LA P ++ +++QT + VDT++ G VS++ + AV + + + + + +VA
Sbjct: 18 LATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVA 77
Query: 71 RRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRV 130
+ G + Q + +A ++ +P++ LF +++ M + + Y+
Sbjct: 78 QLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHA 136
Query: 131 LFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPVGA 190
+ P + A S G TK M + + ++N L+++ V+GKFG P LG VG
Sbjct: 137 VIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGC 196
Query: 191 AWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEK--------ILRIGTPTMLE 242
A+ I I L+ ++ +T+K + + F+ K + R+G P
Sbjct: 197 GVATAIVYWIMLLLLLFYIVTSKRLAHVKV-----FETFHKPQPKELIRLFRLGFPVAAA 251
Query: 243 RGLFSFYNFLYVS-IVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKK 301
F F V+ +VA G ++AH + L S+ +M A S VG LG +
Sbjct: 252 L-FFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQD 310
Query: 302 PEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVG 361
+ A L MT + + + +L V + N Q V +LA+ L+
Sbjct: 311 TKGAAIAANVGL-MTGLATACITALLTVLFREQIALLYTEN----QVVVALAMQLLLFAA 365
Query: 362 ISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTF 421
I + + V +G+LRG D + + T +S + + Y+LG + E +G F
Sbjct: 366 IYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGF 425
Query: 422 PGFKFPGMGVIAAWIGMSL 440
G+ A +G L
Sbjct: 426 WLGFIIGLSAAALMLGQRL 444
>pir||G70693 probable dinF protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1648884|emb|CAB03650.1| (Z81331) dinF [Mycobacterium
tuberculosis]
Length = 439
Score = 108 bits (267), Expect = 1e-22
Identities = 115/466 (24%), Positives = 201/466 (42%), Gaps = 56/466 (12%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
+++ LA PA+ ++ L L D +VG + +++L + +G V + +S GT
Sbjct: 11 RQIAQLALPALGVLAAEPLYLLFDIAVVGRLGAISLAGLAIGSLVLGLVGSQATFLSYGT 70
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAY 125
A ARR G N A Q+ ++A +G V++ ++ + + + A
Sbjct: 71 TARAARRYGAGNRVAAVTEGVQATWLALGLGALVVVVVEATATPLVSAIASGDGITAAAL 130
Query: 126 AYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRL 185
+LR+ L P + A LRG DT P++ + +A+L LLV+G G PR
Sbjct: 131 PWLRIAILGTPAILVSLAGNGWLRGVQDTVRPLRYVVAGFGSSALLCPLLVYGWLGLPRW 190
Query: 186 GPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTMLERGL 245
G G+A A+ +G +A L+ + ++ L+P D ++ +G M+ R L
Sbjct: 191 GLTGSAVANLVGQWLAALLFAGALLAERVSLRP--DRAV----------LGAQLMMARDL 238
Query: 246 F---SFYNFLYVS---IVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGA 299
+ YVS + ARFG AL+AH + L++ + + +IA +LVG LGA
Sbjct: 239 IVRTLAFQVCYVSAAAVAARFGAAALAAHQVVLQLWGLLALVLDSLAIAAQSLVGAALGA 298
Query: 300 KKPEEAE----RTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVI 355
A+ R +L + +A+ V PG T+ D + A +
Sbjct: 299 GDAGHAKAVAWRVTAFSLLAAGILAAALGLGSSVLPGLFTD------DRSVLAAIGVPWW 352
Query: 356 YLIIVGISEIPL-GMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPEL 414
++++ ++P G+ F + G L GAGD + + +V+ L LP L +
Sbjct: 353 FMVV----QLPFAGIVFAVDGVLLGAGDA-AFMRTATVASALVGFLPLVWLSLAY----- 402
Query: 415 SIGPFTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFK--RGKW 458
G G+ W G L TF+ L ++ ++ G+W
Sbjct: 403 -------------GWGLAGIWSG--LGTFIVLRLIFVGWRAYSGRW 433
>pir||A64924 probable membrane protein ydhE precursor - Escherichia coli
>gi|1549276|gb|AAB47941.1| (U68703) hypothetical protein
YdhE [Escherichia coli] >gi|1787953|gb|AAC74735.1|
(AE000261) putative transport protein [Escherichia coli
K12]
Length = 457
Score = 107 bits (265), Expect = 3e-22
Identities = 107/445 (24%), Positives = 195/445 (43%), Gaps = 46/445 (10%)
Query: 8 LWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSW-----FMFPIMMAIS 62
L LA P I+ I+QT + V T++ G S+ + AV +G + W F +++A++
Sbjct: 11 LLALAIPVILAQIAQTAMGFVSTVMAGGYSATDMAAVAIGTSI-WLPAILFGHGLLLALT 69
Query: 63 TGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLE 122
++A+ G E + Q ++A + + +ML G + + + +
Sbjct: 70 P----VIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALAD 125
Query: 123 IAYAYLRVLFLFYPIRFMGFAFFSALR----GAGDTKTPMKLNILMNVINAVLDYLLVFG 178
A YLR L P G+ FF R G TK M + + ++N ++Y+ ++G
Sbjct: 126 KAVGYLRALLWGAP----GYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYG 181
Query: 179 KFGFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDL--SLRFD--IIEKILR 234
FG P LG VG A+ + FL M +I ++ + + + + D +++++++
Sbjct: 182 HFGMPELGGVGCGVATAAVYWVMFL-AMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQ 240
Query: 235 IGTPTMLERGLFSFYNFLYVS-IVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALV 293
+G P L F F V+ +V+ G + ++ H I L S+ ++ + A + V
Sbjct: 241 LGLPIALAL-FFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRV 299
Query: 294 GQNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPF-LSHNDPNYQAVKSL 352
G LG +A+ + L M MA + +F L E L +ND V +L
Sbjct: 300 GYRLGQGSTLDAQTAARTGL----MVGVCMATLTAIFTVSLREQIALLYND--NPEVVTL 353
Query: 353 AVIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIP 412
A +++ + +I + + SG LRG DT+S Y+T + + + Y+L +
Sbjct: 354 AAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILA----LT 409
Query: 413 ELSIGPFTFPGFKFPGMGVIAAWIG 437
+L + P MG WIG
Sbjct: 410 DLVVEP----------MGPAGFWIG 424
>pir||G82392 conserved hypothetical protein VCA0989 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658430|gb|AAF96885.1|
(AE004425) conserved hypothetical protein [Vibrio
cholerae]
Length = 444
Score = 106 bits (262), Expect = 6e-22
Identities = 104/415 (25%), Positives = 181/415 (43%), Gaps = 25/415 (6%)
Query: 2 SDIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAI 61
S + K+L+ + WP + G +S LVD+ +G + + L A G + + I + +
Sbjct: 8 SSLAKQLFQMTWPMLFGVLSLMSFQLVDSAFIGQLGVLPLAAQGFTMPIQMVIIGIQVGL 67
Query: 62 STGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGL---FLGDEVLKIMGAKG 118
T A+++R +G E A ++ + I GI V L L L +L ++GA
Sbjct: 68 GIATTAVISRAIGAGKTEYAKQLGGLVIVIG---GIGVALIALVLYLLRQPLLGLLGAPE 124
Query: 119 EVLEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFG 178
V I Y M + ++S R G+T P L ++ +V+N +LD + +F
Sbjct: 125 TVFAIIDHYWLWWLASAWTGAMLYFYYSVCRANGNTLLPGTLMMVTSVLNLILDPIFIFT 184
Query: 179 KFGFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLR-FDIIEKILRIGT 237
LG GAA I IAF VG+ + + K+ + + +I + + +G
Sbjct: 185 F----DLGIDGAA----IATIIAFGVGIAI-VAPKVAQRQWTSYQWQDLNISQSLTALGH 235
Query: 238 ---PTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVG 294
P ML + L + ++A FG A++A +G R E A + +++ ++G
Sbjct: 236 IMGPAMLSQLLPPLSSMFATKLLASFGTAAVAAWALGSRFEFFALVAVLAMTMSLPPMIG 295
Query: 295 QNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAV 354
+ LGAK+ + V+ A + F +A V VF L E S + V +
Sbjct: 296 RMLGAKEITHIRQLVRIACQFVLGFQLLIALVTYVFATPLAELMTSETE-----VSQILN 350
Query: 355 IYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGF 409
++L+IV IS LG+ ++ G + L ++++ F LP LG F
Sbjct: 351 LHLVIVPISLGALGICMLMVSVANALGKSYVALTISALRLFAF-YLPCLWLGAHF 404
>sp|P28303|DINF_ECOLI DNA-DAMAGE-INDUCIBLE PROTEIN F >gi|7465839|pir||C65212
DNA-damage-inducible protein f - Escherichia coli
(strain K-12) >gi|146611|gb|AAA24069.1| (L02362)
DNA-damage-inducible protein [Escherichia coli]
>gi|396379|gb|AAC43138.1| (U00006) CG Site No. 854
[Escherichia coli] >gi|1790477|gb|AAC77014.1| (AE000477)
DNA-damage-inducible protein F [Escherichia coli K12]
>gi|450010|prf||1920311C DNA-damage-inducible protein
[Escherichia coli]
Length = 459
Score = 106 bits (261), Expect = 8e-22
Identities = 85/299 (28%), Positives = 134/299 (44%), Gaps = 9/299 (3%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSS-VALGAVGLGGQVSWFMFPIMMAISTG 64
K LW LA P I NI+ LL LVDT ++GH+ S V LG V +G + F+F +++ +
Sbjct: 27 KALWHLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMS 86
Query: 65 TLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIA 124
T L A+ G KN + +R Q + +A G + L + D L I+G VLE A
Sbjct: 87 TTGLTAQAYGAKNPQALARTLVQPLLLALGAGALIALLRTPIIDLALHIVGGSEAVLEQA 146
Query: 125 YAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPR 184
+L + +L P L G + P+ L ++ N++N VLD LV G
Sbjct: 147 RRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDVWLVMGL----H 202
Query: 185 LGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRF---DIIEKILRIGTPTML 241
+ GAA A+ I L+G+ L + L L+ + L+ ++L + ML
Sbjct: 203 MNVQGAALATVIAEYATLLIGL-LMVRKILKLRGISGEMLKTAWRGNFRRLLALNRDIML 261
Query: 242 ERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAK 300
L + AR G ++ + + + + + GF+ A A GQ GA+
Sbjct: 262 RSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGAR 320
>pir||H75559 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6457769|gb|AAF09695.1|AE001873_5 (AE001873)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 451
Score = 105 bits (260), Expect = 1e-21
Identities = 115/451 (25%), Positives = 191/451 (41%), Gaps = 44/451 (9%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAISTGT 65
+ L LA P ++ + L L+ T ++G + L A + +F +++ +
Sbjct: 16 RALLRLAGPVVVSQFAANALALIATAVIGRLGERELAAAAYANAAYYLVFIMVVGVMLSV 75
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAY 125
VA+ G + +R + +A ++ VML ++ VL G ++
Sbjct: 76 APRVAQAHGAGDARGVARALGGGLRLALLLSA-VMLPLMWALSFVLPNFAPAGVSRDLVA 134
Query: 126 AYLRVLFLFYPIRFMGFAFFSALRGA--GDTKTPMKLNI-LMNVINAVLDY-LLVFGKFG 181
AYLRV Y + + F ALRG G K + L V+ A+L L FG
Sbjct: 135 AYLRV----YSLGMLPNLAFIALRGTLEGTGKPGAVTGVALTGVVWALLVAPALAFGWGP 190
Query: 182 FPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTML 241
PRLG GAA AS + A+++ L+ + + L D + + R+G P L
Sbjct: 191 LPRLGLAGAAGASA---SAAWIMAALLWPLARRRVAYAGPLGPLGDEVRALFRLGWPIGL 247
Query: 242 ----ERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNL 297
E G+FS L +ARFG L+AH + ++ + +M G + AT VG
Sbjct: 248 TLGAEGGMFSVTTLL----MARFGPEVLAAHNVTMQTITAFFMVPLGIASATGVRVGTEA 303
Query: 298 GAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYL 357
GA + +A R L +++ M A + + P + F++ NDP + + A +L
Sbjct: 304 GAGRLAQARRAGLVGLGLSSAVMLTFAVIELAAPRTVFSVFVNVNDPANAGLIAAATGFL 363
Query: 358 IIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIG 417
I + ++ G+ +GALRG DT+ PL V+ V+ +++G G S+
Sbjct: 364 SIAALFQLMDGLQVTANGALRGLQDTRVPLLVSLVA--------YWVVGLGLGSVLSSVA 415
Query: 418 PFTFPGFKFPGMGVIAAWIGMSLETFVTAGL 448
G+G W G+ TAGL
Sbjct: 416 ----------GLGARGLWFGL------TAGL 430
>pir||E82527 multidrug efflux protein XF2686 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9107925|gb|AAF85483.1|AE004074_7
(AE004074) multidrug efflux protein [Xylella fastidiosa]
Length = 469
Score = 105 bits (259), Expect = 1e-21
Identities = 104/419 (24%), Positives = 183/419 (42%), Gaps = 24/419 (5%)
Query: 2 SDIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAI 61
S++R L LA P ++G++S L+ V +I GH S+V L A +G + W + M
Sbjct: 28 SEVRPTL-LLALPLVLGHVSTGLIGFVLNVIAGHHSTVTLAASTIGTALLWLPMLVPMGT 86
Query: 62 STGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVL 121
LV++ G + + + Q++++A ++G+ VM L + +L + G +++
Sbjct: 87 LISLTVLVSQLHGAERERDIGPLFRQALWLAMLLGL-VMFTFLSVVPALLPLFGIVPDIV 145
Query: 122 EIAYAYLRVL---FLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFG 178
A +L V+ L +P+ F F G T M L ++ L Y L +G
Sbjct: 146 PGAAKFLHVVRWGSLAFPLYFCMRYF---CEGMHCTFPTMLLGFGGLLVLVPLSYALTYG 202
Query: 179 KFGFPRLGPVGAAWASGIGITI-AFLVGMYLFITNKLI-LKPVLDLSLRF-----DIIEK 231
+FGF G G A+ + + + A + +YL+ + + L+ L L D++
Sbjct: 203 RFGFSEYGVEGLGIATVMVMWLQAVVFALYLWRSRRFAHLQLFAHLELPCWARIRDLLNI 262
Query: 232 ILRIGTPTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSA 291
L IG ++E GLF + ++ RFG ++AH I L + + +M G + AT+
Sbjct: 263 GLPIGISILMEGGLF----IVTTLLIGRFGTDEIAAHQIALSVAQLCFMIPMGVAEATTV 318
Query: 292 LVGQNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKS 351
+G +G R + + A VL++ + + V S
Sbjct: 319 RIGHAVGRCDLLVMRRVAWAGYAIVIGTQTLSASVLLLGYDVIVAAYTDD-----LVVAS 373
Query: 352 LAVIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFE 410
LA L+ I + P G+ + SG LRG DT+ P+ + +S + LGF E
Sbjct: 374 LASKLLLFAAIFQFPDGLQMLSSGVLRGMKDTRVPMLLAMISYWGLGMPLGLGLGFALE 432
>dbj|BAA31456.1| (AB010463) NorM [Vibrio parahaemolyticus]
Length = 456
Score = 102 bits (253), Expect = 7e-21
Identities = 96/414 (23%), Positives = 186/414 (44%), Gaps = 39/414 (9%)
Query: 11 LAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSW-----FMFPIMMAISTGT 65
LA P ++ +++QT + VDT++ G V+ + AV + + W F ++MA+
Sbjct: 14 LATPVLIASVAQTGMGFVDTVMAGGVTQTDMAAVSVASSI-WLPSILFGIGLLMAL---- 68
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDE-VLKIMGAKGEVLEIA 124
+ +VA+ G E+ +Q + +A +I IP++ G+ L + +L++M + + +
Sbjct: 69 VPVVAQLNGSARREKIPFEIQQGVVLALLISIPII--GVLLQTQFILQLMDVEAVMADKT 126
Query: 125 YAYLRVLFLFYPIRFMGFAFFSALRGAGD----TKTPMKLNILMNVINAVLDYLLVFGKF 180
Y+ + P F F LR D TK M + + ++N L+++ V+GKF
Sbjct: 127 VGYIHAVIFAVP----AFLLFQTLRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 182
Query: 181 GFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSL-------RFDIIEKIL 233
G P LG VG G+ TI + V L + + + +++ ++ ++
Sbjct: 183 GAPELGGVGC----GVATTIVYWVMFALLLAYVMTSSRLKSINVFGEYHKPQWKAQVRLF 238
Query: 234 RIGTPTMLERGLFSFYNFLYVS-IVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSAL 292
++G P F F V+ +V+ G I ++AH + + S+ +M A S
Sbjct: 239 KLGFPVAAAL-FFEVTLFAVVALLVSPLGPIIVAAHQVAINFSSLVFMLPMSVGAAVSIR 297
Query: 293 VGQNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSL 352
VG LG EE + A ++ M A+A + + L+ ++ N V +L
Sbjct: 298 VGHRLG----EENVDGARVASRVGIMVGLALATITAIIT-VLSRELIAELYTNNPEVITL 352
Query: 353 AVIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLG 406
A+ L+ + + + + +GALRG D ++ T ++ + + Y+LG
Sbjct: 353 AMQLLLFAAVYQCTDAVQVIAAGALRGYKDMRAIFNRTFIAYWILGLPTGYILG 406
>pir||C69140 conserved hypothetical protein MTH314 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621368|gb|AAB84820.1| (AE000816) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 452
Score = 101 bits (249), Expect = 2e-20
Identities = 108/454 (23%), Positives = 199/454 (43%), Gaps = 30/454 (6%)
Query: 3 DIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIS 62
D R+ L L+ P I+ + ++ NLVD + V + AL A+G + + + +
Sbjct: 13 DPRRALIKLSGPLIVAMLLTSIYNLVDAVWVAGLGGEALAAIGFVTPIYMILVGLSNGLG 72
Query: 63 TGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLE 122
G + V+R +G + E + A ++ I + I + + L ++L +GA G L+
Sbjct: 73 AGAASSVSRCLGAGDEEGMNNSASHTIIITLAVSIILTVIIEILLRDILLSLGAAG-ALK 131
Query: 123 IAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGF 182
A Y V+F A + LR GD + PM L V+N VLD +L++
Sbjct: 132 PAMEYGSVVFAGTLFTLFPGAAYGILRSEGDARRPMYAMGLSAVLNMVLDPILIY----T 187
Query: 183 PRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFD--IIEKILRIGTPTM 240
G GAAWA+ I + L+ +Y F+ + + R D ++ IL + P
Sbjct: 188 AGWGIAGAAWATVISQLLVSLLIIYWFLAGRTFTS-IGWSHFRADRGVVWSILSVTIPAS 246
Query: 241 LERGLFS----FYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQN 296
E + S N++ S+ G A++ + G RI +A +P + A ++ G
Sbjct: 247 AEFLVMSMVTALLNWILTSVA---GTSAVAVYSAGWRIVMLAIVPVISVATALVSVSGVA 303
Query: 297 LGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIY 356
G++ E E ++++ + A A + V ++ F ++ A + +
Sbjct: 304 YGSRNFENLEVAHGYSIRLGLLIAGATAALTFVLAPWIAWIFSYSQASSHLAPRITGFLR 363
Query: 357 LIIVGISEIPLGMTFVLSGAL-RGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELS 415
+I + +P G ++SG++ +GAG + L ++ + ++L + AYLL + E+
Sbjct: 364 VICLFYIFLPPG---IMSGSIFQGAGRGMTSLMLSVIRQVLLVAVFAYLLAVTLGLGEVG 420
Query: 416 IGPFTFPGFKFPGMGVIAAWIGMSLETFVTAGLF 449
+ GV+A IG SL ++ A LF
Sbjct: 421 V-----------WWGVVAGDIGGSLVAYLWARLF 443
>emb|CAA84073.1| (Z34303) DinF protein [Streptococcus pneumoniae]
Length = 456
Score = 100 bits (247), Expect = 3e-20
Identities = 93/406 (22%), Positives = 170/406 (40%), Gaps = 20/406 (4%)
Query: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGH-VSSVALGAVGLGGQVSWFMFPIMMAIS 62
I L + +P ++ NI Q L N D +IVG + +L AVG + + + +
Sbjct: 14 ILPSLLSFTFPILLSNIFQQLYNTADVLIVGRFLGQESLAAVGATTAIFDLIVGFTLGVG 73
Query: 63 TGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLE 122
G ++AR G +NF + + + ++ I VML G +L+ + E+L
Sbjct: 74 NGMGIVIARYYGARNFTKIKEAVAATWILGALLSILVMLLGFLGLYPLLQYLDTPAEILP 133
Query: 123 IAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGF 182
+Y Y+ ++ + F F LR GD+ + I ++N VLD +
Sbjct: 134 QSYQYISMIVTCVGVSFAYNLFAGLLRSIGDSLAALGFLIFSALVNVVLDLYFITQL--- 190
Query: 183 PRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVL-----DLSLRFDIIEKILRIGT 237
LG A A+ I ++ ++ Y + L P D SL D++E+ L +G
Sbjct: 191 -HLGVQSAGLATIISQGLSAVLCFYYIRKSVPELLPQFKHFKWDKSLYADLLEQGLAMG- 248
Query: 238 PTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNL 297
L + S + + V FG + +SA RI + A +P S + + QNL
Sbjct: 249 ---LMSSIVSIGSVILQFSVNTFGAVIISAQTAARRIMTFALLPMTAISASMTTFASQNL 305
Query: 298 GAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYL 357
GAK+P+ + ++ +++ + + + + F FL+ + Y + +YL
Sbjct: 306 GAKRPDRIVQGLRIGSRLSISW-AVFVCIFLFFASPALVSFLASSTDGY--LIENGSLYL 362
Query: 358 IIVGISEIPLGMTFVLSGALRGAGDTKSPL---YVTSVSKLLFRIL 400
I L + + L+G G PL ++ + K++F +L
Sbjct: 363 QISSTFYPILSLLLIYRNCLQGLGQKILPLVSSFIELIGKIVFVVL 408
>gb|AAF26015.1|AC016972_11 (AC016972) hypothetical protein; 49518-51504 [Arabidopsis thaliana]
Length = 485
Score = 100 bits (246), Expect = 4e-20
Identities = 125/467 (26%), Positives = 205/467 (43%), Gaps = 48/467 (10%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQV-SWFMFPIMMAISTG 64
KKL +A P I N S +L ++ M+VGH+ + L + + S F ++ +++
Sbjct: 28 KKLSYIAGPMIAVNSSMYVLQVISIMMVGHLGELFLSSTAIAVSFCSVTGFSVVFGLASA 87
Query: 65 TLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIA 124
L + G K +E+ + F++ IP+ L ++GD +L ++G V + A
Sbjct: 88 LETLCGQANGAKQYEKLGVHTYTGIVSLFLVCIPLSLLWTYIGD-ILSLIGQDAMVAQEA 146
Query: 125 YAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNV----INAVLDYLLVFGKF 180
+ L P F G+A L ++ + ++ +V I+ VL + LVF KF
Sbjct: 147 GKFATWLI---PALF-GYATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLCWSLVF-KF 201
Query: 181 GFPRLGPVGAAWASGIGITIAFLV-GMYL-FITNKLILKPVLDLSLRFDIIEKILRIGTP 238
G LG +GAA A G+ + V G+Y+ F ++ + + +SL F+ + + R G P
Sbjct: 202 G---LGSLGAAIAIGVSYWLNVTVLGLYMTFSSSCSKSRATISMSL-FEGMGEFFRFGIP 257
Query: 239 T--MLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQN 296
+ M+ +SF + +S + K+ S + L +S Y A S V
Sbjct: 258 SASMICLEWWSFEFLVLLSGILPNPKLEASVLSVCLSTQSSLYQIPESLGAAASTRVANE 317
Query: 297 LGAKKPEEAERTVKEALKMT---TMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLA 353
LGA P++A V A+ +T ++ + A+ F GYL S VKS+A
Sbjct: 318 LGAGNPKQARMAVYTAMVITGVESIMVGAIVFGARNVFGYL----FSSETEVVDYVKSMA 373
Query: 354 VIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPE 413
+ + +S I + LSG RG+G YV + LF I A LL F
Sbjct: 374 PL----LSLSVIFDALHAALSGVARGSGRQDIGAYVNLAAYYLFGIPTAILLAF------ 423
Query: 414 LSIGPFTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKK 460
GFK G G+ WIG+++ + V A L L+ WKK
Sbjct: 424 ---------GFKMRGRGL---WIGITVGSCVQAVLLGLIVILTNWKK 458
>pir||G82364 DNA-damage-inducible protein F VC0090 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654488|gb|AAF93268.1|
(AE004100) DNA-damage-inducible protein F [Vibrio
cholerae]
Length = 454
Score = 99.1 bits (243), Expect = 1e-19
Identities = 96/414 (23%), Positives = 174/414 (41%), Gaps = 21/414 (5%)
Query: 3 DIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSV-ALGAVGLGGQVSWFMFPIMMAI 61
++ +++ +A P ++ NI+ LL LVD ++GH+ LG V LG + F ++ +
Sbjct: 15 NVHRQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMISVTFWLLGFL 74
Query: 62 STGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVL 121
T L A+ G +N ++ +R+ Q IA + +LF + + + A EV
Sbjct: 75 RMSTTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFSDASSEVK 134
Query: 122 EIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFG 181
A AY + P + F L G + + PM + I+ N+ N VLD LLV G
Sbjct: 135 TYAEAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDLLLVLGL-- 192
Query: 182 FPRLGPVGAAWASGIGITIAFLVGMYL---FITNKLILKPVLDLSLRFDIIEKILRIGTP 238
L GAA AS I L G+ + + P + + +++ +
Sbjct: 193 --GLKVEGAAIASVIADYAGLLFGLLCVGRYWRQHQLPAPFSFIPSLTKELSRLVALNRD 250
Query: 239 TMLE----RGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVG 294
L + +FSF F A G ++A+ + + + GF+ A A+VG
Sbjct: 251 IFLRSLCLQAVFSFMTFQ----GAALGDDIVAANAVLMSFLMMISYGMDGFAYAMEAMVG 306
Query: 295 QNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAV 354
+ +GAK + + + TM ++ + + F L + + N P+ QA +
Sbjct: 307 KAIGAKDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQ--MITNIPSVQATAEHYL 364
Query: 355 IYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFG 408
+L+ + + + F+L G GA K +VS + F + ++ +G
Sbjct: 365 PWLVAMPLIAV---WCFLLDGVFIGATKGKEMRNSMAVSAVAFFAIYGFMTHYG 415
>pir||E82175 conserved hypothetical protein VC1631 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656143|gb|AAF94782.1|
(AE004241) conserved hypothetical protein [Vibrio
cholerae]
Length = 458
Score = 95.6 bits (234), Expect = 1e-18
Identities = 97/390 (24%), Positives = 175/390 (44%), Gaps = 16/390 (4%)
Query: 3 DIRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIS 62
D ++L +A P + NI + LVD +++G + + AVG+ + ++ +++ ++
Sbjct: 14 DFFRRLIAIALPITLQNIMFSSRGLVDVLMLGQLGEAEIAAVGVAARATFVTTIMLVGVT 73
Query: 63 TGTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLE 122
TG L A+ G + + + ++ +L LF +++ + +V
Sbjct: 74 TGGALLTAQYWGAGDRKGVRESTALTWLVSNFFAFFTVLLFLFFPQQIMSLTTDSEQVNA 133
Query: 123 IAYAYLRVL-FLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFG 181
+ YL + F + + + + LR + + V N VL+++L+FGKFG
Sbjct: 134 LGSQYLIITSFTMFAVACVS-SMAVGLRAMHKPGVSTFFSGIGIVSNVVLNWILIFGKFG 192
Query: 182 FPRLGPVGAAWASGIG--ITIAFLVGMYLFITNKLILKPVLDLSLRFDI--IEKILRIGT 237
FP +G GAA A+ + I IA L YL+ L+ D+ D I + LR+
Sbjct: 193 FPAMGIQGAAIATVLSGAIEIACLYS-YLYGKKHLMAFGWQDIKAVIDWPKISRFLRLSL 251
Query: 238 PTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNL 297
PT +++ F Y +I+ + G L+A + +ESI+ G S A + LVG L
Sbjct: 252 PTTFNFLIWAAGLFTYHAIMGQTGVQGLAALSVMTPVESISLSLLIGMSTAAAVLVGNQL 311
Query: 298 GAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTE-PFLSHNDPNYQAVKSLAVIY 356
GAK E +A+ +T S + +++ YL + P L + L+ +
Sbjct: 312 GAK---NYEAVYYQAIGVTA--CSVLVGIVVAIGLYLVQIPVLGAFTALTPETRELSEKF 366
Query: 357 LII--VGISEIPLGMTFVLSGALRGAGDTK 384
++I +GI MT ++ G LR GD K
Sbjct: 367 MLILCLGIVLRSFPMTAIV-GVLRAGGDVK 395
>pir||F70172 conserved hypothetical integral membrane protein BB0583 - Lyme
disease spirochete >gi|2688514|gb|AAB91524.1| (AE001160)
conserved hypothetical integral membrane protein
[Borrelia burgdorferi]
Length = 449
Score = 94.0 bits (230), Expect = 3e-18
Identities = 86/411 (20%), Positives = 176/411 (41%), Gaps = 22/411 (5%)
Query: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFMFPIMMAIST 63
I K+L+ +A P ++ ++ D ++ ++ S + V L +V++ F I+ + T
Sbjct: 11 IIKELFVIAIPTAFESLLFQMVTFFDNFMISYLGSFHVTGVSLANRVTFLFFIIVFGLGT 70
Query: 64 GTLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEI 123
A V++ + +K F + + + I IGI +F ++K+ A + L
Sbjct: 71 ALSAYVSQAIAKKKFLQVRQSFAYILLIGTTIGIIFFIFSFLFPRNIIKLFTANQDSLNF 130
Query: 124 AYAYLRVLFLFYPIRFMGFAFFSAL--RGAGDTKTPMKLNILMNVINAVLDYLLVFGKFG 181
YL+++ L Y + M ++F SA+ + A + K P+ + ++ +IN V +Y+L+FG
Sbjct: 131 GSEYLKIISLSYVL--MAYSFLSAMGFKSAKEVKIPLYVTSIVVLINIVFNYILIFGF-- 186
Query: 182 FPRLGPVGAAWASGIGITIAFLVGMY--LFITNKLILKPVLDLSLRFDIIEKILRIGTPT 239
+G GAA+A+ + + F+ L +N D + L++ P
Sbjct: 187 --SMGIKGAAYATVLARIVEFVFYFLYSLISSNSYYRIKFGDFFAPKVVTRANLKLIIPV 244
Query: 240 MLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGA 299
+ + + + AR G I ++ + + I ++ G +AT ++G +
Sbjct: 245 LSHEIFWVLSITILHAFYARVGSIEYASFAVASNLFDICFVLLHGMGLATGVVIGHLMIY 304
Query: 300 KKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLII 359
K+ ++ F+S + F+L +F L S + + S ++ + I
Sbjct: 305 D---------KKHVRSVGFFLSFLGFLLGIFVVILLIGISSFAPYIFSKLDSPELVSVFI 355
Query: 360 VGISEIPLGMTF---VLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGF 407
+ I + F VL G R +G ++ S + + + AYLL F
Sbjct: 356 YVFASIVIFKAFTAQVLVGVFRASGIPNVCFFIESGVIVFYTLPVAYLLVF 406
>gi|8922709 hypothetical protein FLJ10847 [Homo sapiens]
>gi|7023138|dbj|BAA91852.1| (AK001709) unnamed protein
product [Homo sapiens]
Length = 570
Score = 89.3 bits (218), Expect = 8e-17
Identities = 103/459 (22%), Positives = 189/459 (40%), Gaps = 34/459 (7%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLG-GQVSWFMFPIMMAISTG 64
+ L LA PA + + L++ + ++ GH+ + L AV L ++ + +S+
Sbjct: 36 RALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGLSSA 95
Query: 65 TLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDE-VLKIMGAKGEVLEI 123
L+++ G +N + I ++S + + P + LFL + +L + +V +
Sbjct: 96 CDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPC--WALFLNTQHILLLFRQDPDVSRL 153
Query: 124 AYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFP 183
Y+ + P F+ L G + + N++NA+ +YL +
Sbjct: 154 TQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQL---- 209
Query: 184 RLGPVGAAWASGIG-ITIAFLVGMYLFITNKLILKPVLDLSLR-FDIIEKILRIGTPTML 241
LG +G+A A+ I T+A L+ +Y+ + KL SL LR+ P+ML
Sbjct: 210 HLGVIGSALANLISQYTLALLLFLYI-LGKKLHQATWGGWSLECLQDWASFLRLAIPSML 268
Query: 242 ERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKK 301
+ + + + G + L A I + I YM GFS+A S VG LGA
Sbjct: 269 MLCMEWWAYEVGSFLSGILGMVELGAQSIVYELAIIVYMVLAGFSVAASVRVGNALGAGD 328
Query: 302 PEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVG 361
E+A ++ +L +T +F A + +L+ ++ F + D + +L + I
Sbjct: 329 MEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRD-----IINLVAQVVPIYA 383
Query: 362 ISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTF 421
+S + + G LRG+G+ K V ++ G+ + L IG
Sbjct: 384 VSHLFEALACTSGGVLRGSGNQKVGAIVNTI---------------GYYVVGLPIG---I 425
Query: 422 PGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKK 460
+GV+ W G+ + T A F + WKK
Sbjct: 426 ALMFATTLGVMGLWSGIIICTVFQAVCFLGFIIQLNWKK 464
>pir||H81402 probable integral membrane protein Cj0560 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968028|emb|CAB75196.1| (AL139075) putative integral
membrane protein [Campylobacter jejuni]
Length = 442
Score = 88.9 bits (217), Expect = 1e-16
Identities = 110/435 (25%), Positives = 185/435 (42%), Gaps = 38/435 (8%)
Query: 27 LVDTMIVG-HVSSVALGAVGLGGQVSWFMFPIMMAISTGTLALVARRVGEKNFEEASRIA 85
+VD + VG ++ S AL A+ L F + I+ G+ ++ +G A +I
Sbjct: 33 IVDGIFVGKYLGSDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIF 92
Query: 86 EQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRVLFLFYPIRFMGFAFF 145
SM I FII + + FLG ++ + E+ + + V LF P + FA
Sbjct: 93 SSSMLIIFIISCFIGILEYFLGPVLIDCLNVSDEIKTMTKECMFVFALFAPFTMLSFALD 152
Query: 146 SALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPVGAAWASGIGITIAFLVG 205
+ LR G T M +N+++ + N VLDY+ + + G+ G AA A+ +G+ + + G
Sbjct: 153 NYLRICGKTAYSMVMNVIIALSNIVLDYIFIV-ELGW---GLFSAALATCLGLVLGGIFG 208
Query: 206 MYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTM---LERGLFS-FYNFLYVSIVARFG 261
++ F+ L LK + L + I + IL G+ + L+S F NF+ + I
Sbjct: 209 IFPFLFQNLELK-ISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKI---SD 264
Query: 262 KIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAERTVKEALKMTTMFMS 321
A++A I L I+S M A + N AKK + + + + F+S
Sbjct: 265 TQAVAAFSIVLYIDSFIIMLIIAIGDAMQPALSYNY-AKKDFSRIKAIIKVVFFAGGFLS 323
Query: 322 AMAFVL-MVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEIPLGMTFVLSGALRGA 380
+ VL ++F L F N+ Q K+ A L++ + VLSG+ A
Sbjct: 324 LFSIVLILIFGENLITLFTKENN---QEFKTFAYTALMLFAFNYF-FAWFNVLSGSFLTA 379
Query: 381 GDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPGFKFPGMGVIAAWIGMSL 440
+ S V S+++ LF +P + L L + F MG+ W+
Sbjct: 380 FNKASFSLVLSLAQNLF--IPLFFL--------LFLSCF---------MGLNGVWLSPFF 420
Query: 441 ETFVTAGLFWLVFKR 455
F L W+ KR
Sbjct: 421 AEFCVLILAWIFLKR 435
>gb|AAF21214.1|AC013483_38 (AC013483) putative integral membrane protein [Arabidopsis
thaliana] >gi|11128377|gb|AAG31183.1|AC074395_4
(AC074395) MATE efflux family protein, putative
[Arabidopsis thaliana]
Length = 526
Score = 84.7 bits (206), Expect = 2e-15
Identities = 83/314 (26%), Positives = 137/314 (43%), Gaps = 25/314 (7%)
Query: 76 KNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAK--GEVLEIAYAYLRVLFL 133
K + R A +M + I+G+ +F +F +L +MG K +L A+ YL + L
Sbjct: 162 KKEKRTIRTASTAMILGLILGLVQAIFLIFSSKLLLGVMGVKPNSPMLSPAHKYLSIRAL 221
Query: 134 FYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPVGAAWA 193
P + A RG DTKTP+ ++ +VIN VLD + +F RLG +GAA A
Sbjct: 222 GAPALLLSLAMQGIFRGFKDTKTPLFATVVADVINIVLDPIFIF----VLRLGIIGAAIA 277
Query: 194 SGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTMLERGLFSFYNFLY 253
I L+ +++F+ K+ L P L+F + L+ G + +F L
Sbjct: 278 HVISQYFMTLI-LFVFLAKKVNLIPPNFGDLQFG---RFLKNGLLLLARTIAVTFCQTLA 333
Query: 254 VSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAERTVKEAL 313
++ AR G ++A I L++ + + G ++A A++ + K + L
Sbjct: 334 AAMAARLGTTPMAAFQICLQVWLTSSLLNDGLAVAGQAILACSFAEKDYNKVTAVASRVL 393
Query: 314 KMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEIPL-----G 368
+M F+ + + V G + DP AVI+L+ +GI I
Sbjct: 394 QMG--FVLGLGLSVFVGLGLYFGAGVFSKDP--------AVIHLMAIGIPFIAATQPINS 443
Query: 369 MTFVLSGALRGAGD 382
+ FVL G GA D
Sbjct: 444 LAFVLDGVNFGASD 457
>prf||1901324A ethionine resistance gene [Saccharomyces cerevisiae]
Length = 617
Score = 82.7 bits (201), Expect = 8e-15
Identities = 100/415 (24%), Positives = 171/415 (41%), Gaps = 30/415 (7%)
Query: 12 AWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFM-FPIMMAISTGTLALVA 70
A P I I Q L+L V H+ + LG V LG + + + T L A
Sbjct: 172 ALPLIFTFILQNSLSLASIFSVSHLGTKELGGVTLGSMTANITGLAAIQGLCTCLDTLCA 231
Query: 71 RRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRV 130
+ G KN+ + ++ I + +P+M +++L +M + E+ +A YLRV
Sbjct: 232 QAYGAKNYHLVGVLVQRCAVITILAFLPMMYVWFVWSEKILALMIPERELCALAANYLRV 291
Query: 131 LFLFYPIRFMGFAFFSA----LRGAGDTKTPMKLNILMNVINAVLDYLLVFG-KFGFPRL 185
P GF F L+ G + + +NA+++YLLV+ K G +
Sbjct: 292 TAFGVP----GFILFECGKRFLQCQGIFHASTIVLFVCAPLNALMNYLLVWNDKIG---I 344
Query: 186 GPVGAAWASGIGITIAFLVGMYLFITNKLILKP------VLDLSLRFDIIEKILRIGTP- 238
G +GA + I + L + +T K +P ++ F K++ + P
Sbjct: 345 GYLGAPLSVVINYWLMTLGLLIYAMTTKHKERPLKCWNGIIPKEQAFKNWRKMINLAIPG 404
Query: 239 -TMLERGLFSFYNFLYVSIVA-RFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQN 296
M+E F F ++I A G AL A I I S+AY F S++TS V
Sbjct: 405 VVMVEA---EFLGFEVLTIFASHLGTDALGAQSIVATIASLAYQVPFSISVSTSTRVANF 461
Query: 297 LGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIY 356
+GA + T + +L ++ + S FV+ + + F + + AV + V
Sbjct: 462 IGASLYDSCMITCRVSLLLSFVCSSMNMFVICRYKEQIASLFSTES-----AVVKMVVDT 516
Query: 357 LIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEI 411
L ++ ++ +G LRG G K Y+ V+ + AY+L F + +
Sbjct: 517 LPLLAFMQLFDAFNASTAGCLRGQGRQKIGGYINLVAFYCLGVPMAYVLAFLYHL 571
>pir||E82296 conserved hypothetical protein VC0650 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655087|gb|AAF93816.1|
(AE004151) conserved hypothetical protein [Vibrio
cholerae]
Length = 445
Score = 81.9 bits (199), Expect = 1e-14
Identities = 76/325 (23%), Positives = 140/325 (42%), Gaps = 15/325 (4%)
Query: 14 PAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGG-QVSW----FMFPIMMAISTGTLAL 68
P + + L +VD + +GH +GA GL G V+W + I M + GT AL
Sbjct: 16 PTVAAMLVNGLYQVVDGIFIGHY----VGAEGLAGINVAWPVIGTILGIGMLVGVGTGAL 71
Query: 69 VARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYL 128
+ + GE + + A RI + ++ V + F+ D+ L+ GA+G V E+ YL
Sbjct: 72 ASIKQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGRVFELGLQYL 131
Query: 129 RVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPV 188
+VL + A LR L ++ + N LDYL + + +
Sbjct: 132 QVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFI----AWLQWELT 187
Query: 189 GAAWASGIGITIAFLVGMYLFITNKLILKPVLD-LSLRFDIIEKILRIGTPTMLERGLFS 247
GAA A+ + + L+G+ F + + ++ L L + + KI IG + S
Sbjct: 188 GAAIATTLAQVVVTLLGLAYFFSARANMRLTRRCLRLEWHSLPKIFAIGVSSFFMYAYGS 247
Query: 248 FYNFLYVSIVARFGK-IALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAE 306
L+ +++ +G + + A+ + I +I Y+ G + L + GA+ +
Sbjct: 248 TMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLASYHFGARNYDHIR 307
Query: 307 RTVKEALKMTTMFMSAMAFVLMVFP 331
+ ++ A+ + + A VL +FP
Sbjct: 308 KLLRLAMGIAVLGGMAFVLVLNLFP 332
>dbj|BAB04869.1| (AP001511) DNA-damage-inducible protein [Bacillus halodurans]
Length = 451
Score = 81.5 bits (198), Expect = 2e-14
Identities = 77/339 (22%), Positives = 147/339 (42%), Gaps = 24/339 (7%)
Query: 11 LAWPAIMGNISQTLLNLVDTMIVGHVSSVAL-GAVGLGGQVSWFMFPIMMAISTGTLALV 69
LA P I ++ L+ VDT IVGH+ AL G V +G + M+ + + T
Sbjct: 21 LAIPLIFSAMTTPLIGAVDTAIVGHLQDPALIGGVAVGALIFNTMYWLFGFLRVSTSGFS 80
Query: 70 ARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLR 129
A+ +G K ++ + +A +G+ +L + L I+ V A Y+
Sbjct: 81 AQALGRKKEDDIMLAFVRPFLLAMFVGLSFILLQHPIKSASLLIISPPEHVGLFAEQYVA 140
Query: 130 VLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVF-------GKFGF 182
+ P + + L G G + + + I N++N LD+L V+ G
Sbjct: 141 IRIWGAPFALISYVVIGWLMGIGRIRGAVTIQIGTNLLNVALDFLFVYWMQWGIGGVAAA 200
Query: 183 PRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLD-LSLRFDIIEKILRIGTPTML 241
+ V A A + + + ++ +T L +P+L L++ D+ + + + T
Sbjct: 201 SLIAEVTGAVAGCLFVLRCYSFSVFSSLTQVLDKRPILHMLTVNRDLFIRTICLLTVLT- 259
Query: 242 ERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKK 301
+ SI ARFG+++L+A+ I L++ + G + A S +VG+++GA+
Sbjct: 260 ----------TFTSIGARFGEVSLAANAILLQLHYLMAYMFDGVANAASIVVGRSVGARD 309
Query: 302 PEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLS 340
ER V ++ ++ S + L+ G + EP ++
Sbjct: 310 RSLFERVV----RLDIVWSSVICLWLVCTLGLMKEPIIA 344
>pir||G83043 probable transporter PA4821 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951089|gb|AAG08206.1|AE004895_6
(AE004895) probable transporter [Pseudomonas aeruginosa]
Length = 453
Score = 76.9 bits (186), Expect = 5e-13
Identities = 106/464 (22%), Positives = 180/464 (37%), Gaps = 48/464 (10%)
Query: 7 KLWTLAWPAIMGNISQTLLNLVDTMIVGHVS-SVALGAVGLGGQVSWFMFPIMMAISTGT 65
++W LA P I+ N+S L++LVD+ +VGH+ + LGAV +GG + M ++ + GT
Sbjct: 16 RVWALAGPMILSNVSVPLVHLVDSTVVGHLPHAYQLGAVAVGGSLYTLMVGVLGFLRMGT 75
Query: 66 LALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAY 125
A+ G + I Q + +A ++ + + L L L++M E+ A
Sbjct: 76 TGFAAQAAGRDDGGALRLILAQGLGMALLLALLLGALALPLSGWALQLMQPSAELTGEAR 135
Query: 126 AYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRL 185
A+ L P +A G + + P+ + + N+ N L V G
Sbjct: 136 AFFHTRLLGLPAALASYALVGWFLGTQNARAPLAILLTTNLSNIALVLWFVHGL----DW 191
Query: 186 GPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDIIEKILRIGTPTMLERGL 245
G GAA AS + L+G+ L L +P ++ + L M+ R +
Sbjct: 192 GVQGAARASVLAEWSGALLGLAL-TRRDLARRPG---RAQWQRLRHWLSWLPLLMVNRDI 247
Query: 246 F------SFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGA 299
F FL R G ++A+ + L + G + A AL G +GA
Sbjct: 248 FIRSLALQLVFFLLTVQGTRLGDTTVAANALLLNGLLLTSYALDGLAHAVEALCGHAIGA 307
Query: 300 KKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLII 359
+ R + A + + A A + +F G+L S + V+ +A YL
Sbjct: 308 RDRAALRRALVVAGGWSLLASLAFAALFALF-GHLFIDLQS----DIAGVREVAYAYLPY 362
Query: 360 VGISEIPLGM-TFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGP 418
+ + LGM +++L G GA + + A L+ +P
Sbjct: 363 LACLPL-LGMWSYLLDGLFIGATRAR-------------EMRNAMLVAVAASLP------ 402
Query: 419 FTFPGFKFPGMGVIAAWIG----MSLETFVTAGLFWLVFKRGKW 458
G+ G+G W+ M L V A W + +R W
Sbjct: 403 ---LGWLLQGLGNHGLWLAFLAFMLLRGLVLAAYGWRLTRRDGW 443
>gi|6321821 Yhr032wp [Saccharomyces cerevisiae] >gi|731645|sp|P38767|YHJ2_YEAST
HYPOTHETICAL 64.2 KD PROTEIN IN SLT2-PUT2 INTERGENIC
REGION >gi|626603|pir||S46742 hypothetical protein
YHR032w - yeast (Saccharomyces cerevisiae)
>gi|488176|gb|AAB68911.1| (U00062) Yhr032wp
[Saccharomyces cerevisiae]
Length = 581
Score = 76.9 bits (186), Expect = 5e-13
Identities = 102/416 (24%), Positives = 171/416 (40%), Gaps = 34/416 (8%)
Query: 12 AWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQVSWFM-FPIMMAISTGTLALVA 70
A P I I Q L+L V H+ + LG V LG + + + T L A
Sbjct: 172 ALPLIFTFILQNSLSLASIFSVSHLGTKELGGVTLGSMTANITGLAAIQGLCTCLDTLCA 231
Query: 71 RRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRV 130
+ G KN+ + ++ I + +P+M +++L +M + E+ +A YLRV
Sbjct: 232 QAYGAKNYHLVGVLVQRCAVITILAFLPMMYVWFVWSEKILALMIPERELCALAANYLRV 291
Query: 131 LFLFYPIRFMGFAFFSA----LRGAGDTKTPMKLNILMNVINAVLDYLLVFG-KFGFPRL 185
P GF F L+ G + + +NA+++YLLV+ K G +
Sbjct: 292 TAFGVP----GFILFECGKRFLQCQGIFHASTIVLFVCAPLNALMNYLLVWNDKIG---I 344
Query: 186 GPVGAAWASGIGITIAFLVGMYLFITNKLILKP------VLDLSLRFDIIEKILRIGTP- 238
G +GA + I + L + +T K +P ++ F K++ + P
Sbjct: 345 GYLGAPLSVVINYWLMTLGLLIYAMTTKHKERPLKCWNGIIPKEQAFKNWRKMINLAIPG 404
Query: 239 -TMLERGLFSFYNFLYVSIVA-RFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQN 296
M+E F F ++I A G AL A I I S+AY F S++TS V
Sbjct: 405 VVMVEA---EFLGFEVLTIFASHLGTDALGAQSIVATIASLAYQVPFSISVSTSTRVANF 461
Query: 297 LGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIY 356
+GA + T + +L ++ + S FV+ + + F + + AV + V
Sbjct: 462 IGASLYDSCMITCRVSLLLSFVCSSMNMFVICRYKEQIASLFSTES-----AVVKMVVDT 516
Query: 357 LIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIP 412
L ++ ++ +G LRG G K+ +V S++L LP G IP
Sbjct: 517 LPLLAFMQLFDAFNASTAGCLRGQGRQKN-RWVHQPSRIL---LPRCAHGICVSIP 568
>pir||T02512 hypothetical protein T19C21.18 - Arabidopsis thaliana
>gi|3395439|gb|AAC28771.1| (AC004683) hypothetical
protein [Arabidopsis thaliana]
Length = 539
Score = 74.9 bits (181), Expect = 2e-12
Identities = 100/394 (25%), Positives = 172/394 (43%), Gaps = 31/394 (7%)
Query: 4 IRKKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQV-----SWFMFPIM 58
I ++ ++A PA + + + +LVDT VGH+ S L AVG+ V F P +
Sbjct: 76 IGMEIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKLFNVP-L 134
Query: 59 MAISTGTLA---LVARRVGEKNFEEASRI---AEQSMYIAFIIGIPVMLFGLFLGDEVLK 112
+ ++T +A +A + + E + ++ S+ +A +GI + L LG + L
Sbjct: 135 LNVTTSFVAEEQAIAAKDDNDSIETSKKVLPSVSTSLVLAAGVGIAEAI-ALSLGSDFLM 193
Query: 113 IMGA---KGEVLEIAYAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINA 169
+ A + A +LR+ P + A A RG DT TP+ + NV+NA
Sbjct: 194 DVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFKDTTTPLYAVVAGNVLNA 253
Query: 170 VLDYLLVFGKFGFPRLGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLRFDII 229
VLD +L+F GF G GAA A+ I + + ++ N ++L P + + +
Sbjct: 254 VLDPILIF-VLGF---GISGAAAATVISEYLIAFILLWKLNENVVLLSPQIKVGRANQYL 309
Query: 230 EK-ILRIGTPTMLERGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIA 288
+ L IG L L F L S+ A+ G ++ H I L I + +IA
Sbjct: 310 KSGGLLIGRTVAL---LVPF--TLATSLAAQNGPTQMAGHQIVLEIWLAVSLLTDALAIA 364
Query: 289 TSALVGQNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQA 348
+L+ + ++A + L++ + +A VL + EPF S + +
Sbjct: 365 AQSLLATTYSQGEYKQAREVLFGVLQVGLATGTGLAAVLFI----TFEPFSSLFTTDSEV 420
Query: 349 VKSLAVIYLIIVGISEIPLGMTFVLSGALRGAGD 382
+K +A+ + V S+ + FVL G G D
Sbjct: 421 LK-IALSGTLFVAGSQPVNALAFVLDGLYYGVSD 453
>gb|AAD30255.1|AC007296_16 (AC007296) Strong similarity to gi|3367522 F8K4.9 from Arabidopsis
thaliana BAC gb|AC004392. EST gb|W43487 comes from this
gene
Length = 503
Score = 73.0 bits (176), Expect = 7e-12
Identities = 95/470 (20%), Positives = 184/470 (38%), Gaps = 54/470 (11%)
Query: 6 KKLWTLAWPAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQ-VSWFMFPIMMAISTG 64
K L+ LA PAI + ++++ + G + S+ L A LG + F +M+ + +
Sbjct: 52 KYLFHLAAPAIFVYVINNGMSMLTRIFAGRLGSMQLAAASLGNSGFNMFTLGLMLGMGSA 111
Query: 65 TLALVARRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIA 124
L + G ++ ++S + I G+P+ L +F +L +G +V +A
Sbjct: 112 VETLCGQAHGAHRYDMLGVYLQRSTIVLVITGLPMTLLFIF-SKPLLISLGEPADVASVA 170
Query: 125 YAYLRVLFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPR 184
++ + + F L+ ++ VI+ +L +L VF KFG+
Sbjct: 171 SVFVYGMIPMIFAYAVNFPIQKFLQSQSIVTPSAYISAATLVIHLILSWLSVF-KFGWGL 229
Query: 185 LGPVGAAWASGIGITIAFLVGMYLFITNKLILKPVLDLSLR---------FDIIEKILRI 235
LG +++ + ++ + ++I + R FD + ++
Sbjct: 230 LG-----------LSVVHSLSWWIIVLAQIIYIKISPRCRRTWDGFSWKAFDGLWDFFQL 278
Query: 236 GTPTMLERGLFSFYNFLYVSIVA--RFGKIALSAHYIGLRIESIAYMPAFGFSIATSALV 293
+ + L S+Y+ + V + + ++AL + I + I ++++M + GF+ A S V
Sbjct: 279 SAASAVMLCLESWYSQILVLLAGLLKDPELALDSLAICMSISAMSFMVSVGFNAAASVRV 338
Query: 294 GQNLGAKKPEEAERTVKEALKMTTMFMSAMAFVLMVFPGYLT---EPFLSHNDPNYQAVK 350
LGA P A +T + ++F+L +F + +S+ + AV
Sbjct: 339 SNELGAGNPRSA--------AFSTAVTTGVSFLLSLFEAIVILSWRHVISYIFTDSPAVA 390
Query: 351 SLAVIYLIIVGISEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFE 410
+ I+ + G+ VLSG G G YV + I Y+LGF ++
Sbjct: 391 EAVAELSPFLAITIVLNGVQPVLSGVAVGCGWQAYVAYVNIGCYYIVGIPIGYVLGFTYD 450
Query: 411 IPELSIGPFTFPGFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKK 460
MG W GM T + + +V R W K
Sbjct: 451 ------------------MGARGIWTGMIGGTLMQTIILVIVTFRTDWDK 482
>gi|11428103 hypothetical protein FLJ10847 [Homo sapiens]
Length = 582
Score = 72.2 bits (174), Expect = 1e-11
Identities = 89/390 (22%), Positives = 157/390 (39%), Gaps = 33/390 (8%)
Query: 74 GEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDE-VLKIMGAKGEVLEIAYAYLRVLF 132
G +N + I ++S + + P + LFL + +L + +V + Y+ +
Sbjct: 220 GSQNLKHVGVILQRSALVLLLCCFPC--WALFLNTQHILLLFRQDPDVSRLTQTYVTIFI 277
Query: 133 LFYPIRFMGFAFFSALRGAGDTKTPMKLNILMNVINAVLDYLLVFGKFGFPRLGPVGAAW 192
P F+ L G + + N++NA+ +YL + LG +G+A
Sbjct: 278 PALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQL----HLGVIGSAL 333
Query: 193 ASGIG-ITIAFLVGMYLFITNKLILKPVLDLSLR-FDIIEKILRIGTPTMLERGLFSFYN 250
A+ I T+A L+ +Y+ + KL SL LR+ P+ML + +
Sbjct: 334 ANLISQYTLALLLFLYI-LGKKLHQATWGGWSLECLQDWASFLRLAIPSMLMLCMEWWAY 392
Query: 251 FLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKPEEAERTVK 310
+ + G + L A I + I YM GFS+A S VG LGA E+A ++
Sbjct: 393 EVGSFLSGILGMVELGAQSIVYELAIIVYMVPAGFSVAASVRVGNALGAGDMEQARKSST 452
Query: 311 EALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGISEIPLGMT 370
+L +T +F A + +L+ ++ F + D + +L + I +S + +
Sbjct: 453 VSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRD-----IINLVAQVVPIYAVSHLFEALA 507
Query: 371 FVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFPGFKFPGMG 430
G LRG+G+ K V ++ G+ + L IG +G
Sbjct: 508 CTSGGVLRGSGNQKVGAIVNTI---------------GYYVVGLPIG---IALMFATTLG 549
Query: 431 VIAAWIGMSLETFVTAGLFWLVFKRGKWKK 460
V+ W G+ + T A F + WKK
Sbjct: 550 VMGLWSGIIICTVFQAVCFLGFIIQLNWKK 579
>dbj|BAB02774.1| (AB023036) gb|AAF24840.1~gene_id:MDB19.4~similar to unknown protein
[Arabidopsis thaliana]
Length = 477
Score = 71.8 bits (173), Expect = 2e-11
Identities = 100/461 (21%), Positives = 190/461 (40%), Gaps = 46/461 (9%)
Query: 14 PAIMGNISQTLLNLVDTMIVGHVSSVALGAVGLGGQ---VSWFMFPIMMAISTGTLALVA 70
P I+ N+ + + M H+ + L L VS F F M+ +S L
Sbjct: 49 PMILTNVFYYCIPITSVMFASHLGQLELAGATLANSWATVSGFAF--MVGLSGSLETLCG 106
Query: 71 RRVGEKNFEEASRIAEQSMYIAFIIGIPVMLFGLFLGDEVLKIMGAKGEVLEIAYAYLRV 130
+ G K + + S ++ + I + +F F + + ++ + + A Y++
Sbjct: 107 QGFGAKRYRMLGVHLQSSCIVSLVFSILITIFWFFT-ESIFGLLRQDPSISKQAALYMK- 164
Query: 131 LFLFYPIRFMGFAFFSALRGAGDTKTPMKLNILMN----VINAVLDYLLVFGKFGFPRLG 186
+ + + F + T++ + ++ + VIN Y+LV+ LG
Sbjct: 165 ---YQAPGLLAYGFLQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVY----VAGLG 217
Query: 187 PVGAAWASGIGITIAFL-VGMYLFITNKLILKPVLDLSL---RFDIIEKILRIGTPTMLE 242
+GA A+ I + IAFL +G Y+ + K + SL R+ +I L + + M+
Sbjct: 218 FIGAPIATSISLWIAFLSLGTYVMCSEKF-KETWTGFSLESFRYIVINLTLSLPSAAMVC 276
Query: 243 RGLFSFYNFLYVSIVARFGKIALSAHYIGLRIESIAYMPAFGFSIATSALVGQNLGAKKP 302
++F ++++ V +I S I + E+I+YM +G S A S V LGA
Sbjct: 277 LEYWAFEILVFLAGVMPNPEINTSLVAICVNTEAISYMLTYGLSAAASTRVSNELGAGNV 336
Query: 303 EEAERTVKEALKMTTMFMSAMAFVLMVFPGYLTEPFLSHNDPNYQAVKSLAVIYLIIVGI 362
+ A++ ++K++ + + VL+V G+ + ++ +Y + A + +
Sbjct: 337 KGAKKATSVSVKLSLVLALGVVIVLLV--GH--DGWVGLFSDSYVIKEEFASLRFFLAAS 392
Query: 363 SEIPLGMTFVLSGALRGAGDTKSPLYVTSVSKLLFRILPAYLLGFGFEIPELSIGPFTFP 422
+ + VLSG RG G + VT ++ F YL+G + I F
Sbjct: 393 ITLD-SIQGVLSGVARGCGWQR---LVTVINLATF-----YLIG-------MPIAAFCGF 436
Query: 423 GFKFPGMGVIAAWIGMSLETFVTAGLFWLVFKRGKWKKIKI 463
KF G+ WIG+ F + L+ KW K+ +
Sbjct: 437 KLKFYAKGL---WIGLICGIFCQSSSLLLMTIFRKWTKLNV 474
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.145 0.431
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162338632
Number of Sequences: 2977
Number of extensions: 6809958
Number of successful extensions: 20590
Number of sequences better than 1.0e-10: 72
Number of HSP's better than 0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 20303
Number of HSP's gapped (non-prelim): 100
length of query: 463
length of database: 189,106,746
effective HSP length: 53
effective length of query: 410
effective length of database: 157,386,935
effective search space: 64528643350
effective search space used: 64528643350
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 167 (69.5 bits)