BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0246 (PAB0246) DE:Hypothetical protein
         (157 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75151 hypothetical protein PAB0246 - Pyrococcus abyssi (st...   307  6e-83
pir||B71192 hypothetical protein PH1810 - Pyrococcus horikoshii ...   169  2e-41

>pir||D75151 hypothetical protein PAB0246 - Pyrococcus abyssi (strain Orsay)
           >gi|5457801|emb|CAB49291.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 157
           
 Score =  307 bits (777), Expect = 6e-83
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MILERILKPRYIALILEEIPREKGLHIMELPKGTGYEVEVGVEYFVDSTFGKFIYIVKSK 60
           MILERILKPRYIALILEEIPREKGLHIMELPKGTGYEVEVGVEYFVDSTFGKFIYIVKSK
Sbjct: 1   MILERILKPRYIALILEEIPREKGLHIMELPKGTGYEVEVGVEYFVDSTFGKFIYIVKSK 60

Query: 61  DLLILARSDKKLNVKEKEEFLIRNEKGLKRFLISKVSKSEKIKIEGLSLSLAMVAGILFS 120
           DLLILARSDKKLNVKEKEEFLIRNEKGLKRFLISKVSKSEKIKIEGLSLSLAMVAGILFS
Sbjct: 61  DLLILARSDKKLNVKEKEEFLIRNEKGLKRFLISKVSKSEKIKIEGLSLSLAMVAGILFS 120

Query: 121 YFTELEDYMVIIAGIFGVAGKIIEKVFMYYIIGYCKS 157
           YFTELEDYMVIIAGIFGVAGKIIEKVFMYYIIGYCKS
Sbjct: 121 YFTELEDYMVIIAGIFGVAGKIIEKVFMYYIIGYCKS 157


>pir||B71192 hypothetical protein PH1810 - Pyrococcus horikoshii
           >gi|3258246|dbj|BAA30929.1| (AP000007) 158aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 158
           
 Score =  169 bits (423), Expect = 2e-41
 Identities = 77/159 (48%), Positives = 121/159 (75%), Gaps = 4/159 (2%)

Query: 2   ILERILKPRYIALILEE---IPREKGLHIMELPKGTGYEVEVGVEYFVDSTFGKFIYIVK 58
           ++E ILKP YIA I++E   + +EK   I E+P+G  YE+E  VEYFVDSTF +FIYI +
Sbjct: 1   MMEDILKPEYIAFIIKEREKLKKEKAQTI-EIPRGESYEIEATVEYFVDSTFERFIYIAR 59

Query: 59  SKDLLILARSDKKLNVKEKEEFLIRNEKGLKRFLISKVSKSEKIKIEGLSLSLAMVAGIL 118
           S+D +++ARS +K+N K +++FL++++KGLKR L+S++SKS+K+  +G++  LA + G+L
Sbjct: 60  SEDSILVARSSEKINTKGEKKFLVKDKKGLKRLLLSEISKSKKVGTKGINFILATIIGVL 119

Query: 119 FSYFTELEDYMVIIAGIFGVAGKIIEKVFMYYIIGYCKS 157
            SY   L++Y+++IA IFG+ GK +E +  YY+IGYC+S
Sbjct: 120 LSYMANLQEYVILIAAIFGIMGKFLEDIASYYLIGYCES 158


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.146    0.397 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52994683
Number of Sequences: 2977
Number of extensions: 2023689
Number of successful extensions: 5208
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5205
Number of HSP's gapped (non-prelim): 2
length of query: 157
length of database: 189,106,746
effective HSP length: 54
effective length of query: 103
effective length of database: 156,788,448
effective search space: 16149210144
effective search space used: 16149210144
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)