BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0247 (PAB0247) DE:Hypothetical protein
(422 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75151 hypothetical protein PAB0247 - Pyrococcus abyssi (st... 866 0.0
pir||D71192 hypothetical protein PH1812 - Pyrococcus horikoshii ... 783 0.0
sp|Q58495|YA95_METJA HYPOTHETICAL PROTEIN MJ1095 >gi|2128665|pir... 324 8e-88
pir||C69229 conserved hypothetical protein MTH966 - Methanobacte... 311 1e-83
gi|11499840 conserved hypothetical protein [Archaeoglobus fulgid... 305 8e-82
gb|AAG20252.1| (AE005100) Vng2110c [Halobacterium sp. NRC-1] 225 9e-58
gb|AAK40597.1| Conserved hypothetical protein [Sulfolobus solfat... 203 2e-51
emb|CAC11685.1| (AL445064) conserved hypothetical protein [Therm... 195 9e-49
pir||D72653 hypothetical protein APE0656 - Aeropyrum pernix (str... 173 3e-42
>pir||F75151 hypothetical protein PAB0247 - Pyrococcus abyssi (strain Orsay)
>gi|5457803|emb|CAB49293.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 422
Score = 866 bits (2214), Expect = 0.0
Identities = 422/422 (100%), Positives = 422/422 (100%)
Query: 1 MLLHIGIDDTDSPNGMCTTYLGALLYRELSRFGEPVDLPRLIRLNPNIPYKTRGNGAVAL 60
MLLHIGIDDTDSPNGMCTTYLGALLYRELSRFGEPVDLPRLIRLNPNIPYKTRGNGAVAL
Sbjct: 1 MLLHIGIDDTDSPNGMCTTYLGALLYRELSRFGEPVDLPRLIRLNPNIPYKTRGNGAVAL 60
Query: 61 TFDILDEYVDDVKNIVVEHVEKLAEVDHENTNPGVAFLEGEVPEILRKFSLKALREHVTI 120
TFDILDEYVDDVKNIVVEHVEKLAEVDHENTNPGVAFLEGEVPEILRKFSLKALREHVTI
Sbjct: 61 TFDILDEYVDDVKNIVVEHVEKLAEVDHENTNPGVAFLEGEVPEILRKFSLKALREHVTI 120
Query: 121 DEAEDVAKKSGAEIVKFKLGRGIIGALASIGYPLENYTYELLAYRRLENREKERKVNRDS 180
DEAEDVAKKSGAEIVKFKLGRGIIGALASIGYPLENYTYELLAYRRLENREKERKVNRDS
Sbjct: 121 DEAEDVAKKSGAEIVKFKLGRGIIGALASIGYPLENYTYELLAYRRLENREKERKVNRDS 180
Query: 181 VFDMDRRFYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKVMLAYESVIIEEDVKM 240
VFDMDRRFYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKVMLAYESVIIEEDVKM
Sbjct: 181 VFDMDRRFYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKVMLAYESVIIEEDVKM 240
Query: 241 VQLFKTNQSTDDHLQWKKIKDIRLYDNVIVRGKVASKYWEKGRHVFFEIEDETGKMRVAA 300
VQLFKTNQSTDDHLQWKKIKDIRLYDNVIVRGKVASKYWEKGRHVFFEIEDETGKMRVAA
Sbjct: 241 VQLFKTNQSTDDHLQWKKIKDIRLYDNVIVRGKVASKYWEKGRHVFFEIEDETGKMRVAA 300
Query: 301 FEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGVLTINLEKFYPVKLVPKREYRKPRCPRCG 360
FEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGVLTINLEKFYPVKLVPKREYRKPRCPRCG
Sbjct: 301 FEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGVLTINLEKFYPVKLVPKREYRKPRCPRCG 360
Query: 361 GTMKSKGDYLKCKRCGYKMPKVLIPVEKPRDLEKKIYEVPPDARKHLSRPLVLPGAEDKF 420
GTMKSKGDYLKCKRCGYKMPKVLIPVEKPRDLEKKIYEVPPDARKHLSRPLVLPGAEDKF
Sbjct: 361 GTMKSKGDYLKCKRCGYKMPKVLIPVEKPRDLEKKIYEVPPDARKHLSRPLVLPGAEDKF 420
Query: 421 LY 422
LY
Sbjct: 421 LY 422
>pir||D71192 hypothetical protein PH1812 - Pyrococcus horikoshii
>gi|3258248|dbj|BAA30931.1| (AP000007) 424aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 424
Score = 783 bits (2000), Expect = 0.0
Identities = 369/421 (87%), Positives = 408/421 (96%)
Query: 1 MLLHIGIDDTDSPNGMCTTYLGALLYRELSRFGEPVDLPRLIRLNPNIPYKTRGNGAVAL 60
MLLHIG+DDTDSPNGMCTTYLGALLYRELSRFGEPVDLP+LIRLNPNIPYKTRGNGAV+L
Sbjct: 1 MLLHIGLDDTDSPNGMCTTYLGALLYRELSRFGEPVDLPKLIRLNPNIPYKTRGNGAVSL 60
Query: 61 TFDILDEYVDDVKNIVVEHVEKLAEVDHENTNPGVAFLEGEVPEILRKFSLKALREHVTI 120
TFDIL++Y+++ K +VV+ V+KLAEV+HENTNPG+AFLEGEVPEILR+F++KALREHVTI
Sbjct: 61 TFDILEDYLNEAKELVVKTVKKLAEVEHENTNPGIAFLEGEVPEILRRFAIKALREHVTI 120
Query: 121 DEAEDVAKKSGAEIVKFKLGRGIIGALASIGYPLENYTYELLAYRRLENREKERKVNRDS 180
DEAE +AKK+GAEIVK KLGRGIIGALASIGYPL NYTYELLAYR+LENREK R+V+RDS
Sbjct: 121 DEAEKIAKKAGAEIVKLKLGRGIIGALASIGYPLNNYTYELLAYRKLENREKVRRVDRDS 180
Query: 181 VFDMDRRFYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKVMLAYESVIIEEDVKM 240
VF+MDR+FYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKV+LAYE+VII E+V+M
Sbjct: 181 VFEMDRKFYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKVLLAYENVIINENVEM 240
Query: 241 VQLFKTNQSTDDHLQWKKIKDIRLYDNVIVRGKVASKYWEKGRHVFFEIEDETGKMRVAA 300
+QLFKTNQSTDDHL WKKI DI+LYDNVIV+GKVASKYWE+GRHVFFEIEDETGK+RVAA
Sbjct: 241 IQLFKTNQSTDDHLVWKKIGDIKLYDNVIVKGKVASKYWERGRHVFFEIEDETGKIRVAA 300
Query: 301 FEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGVLTINLEKFYPVKLVPKREYRKPRCPRCG 360
FEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGVLTINLEKFYP+KLVPK EYRKP+CP+CG
Sbjct: 301 FEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGVLTINLEKFYPIKLVPKVEYRKPKCPKCG 360
Query: 361 GTMKSKGDYLKCKRCGYKMPKVLIPVEKPRDLEKKIYEVPPDARKHLSRPLVLPGAEDKF 420
GTMKSKGDYLKCKRCGYKMPKVLIPV+ PRDLE+KIYEVPPDARKHLSRPLVLP +EDKF
Sbjct: 361 GTMKSKGDYLKCKRCGYKMPKVLIPVKLPRDLERKIYEVPPDARKHLSRPLVLPKSEDKF 420
Query: 421 L 421
+
Sbjct: 421 I 421
>sp|Q58495|YA95_METJA HYPOTHETICAL PROTEIN MJ1095 >gi|2128665|pir||F64436 hypothetical
protein MJ1095 - Methanococcus jannaschii
>gi|1591739|gb|AAB99098.1| (U67552) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 423
Score = 324 bits (823), Expect = 8e-88
Identities = 194/428 (45%), Positives = 263/428 (61%), Gaps = 25/428 (5%)
Query: 1 MLLHIGIDDTDSPNGMCTTYLGALLYRELSRFGEPVDLPRLIRLNPNIPYKTRGNGAVAL 60
+++ IGIDDTDSPN CTTY+ LL EL G VD+P+LIR+NP + YKTRGNG VA+
Sbjct: 2 VMMFIGIDDTDSPNKYCTTYIATLLIEELKGCGYSVDMPKLIRMNPMVKYKTRGNGGVAI 61
Query: 61 TFDILDEYV----DDVKNIVVEHVEKLAEVDHENTNPGVAFLE----GEVPEILRKFSLK 112
ILDE +++KNI + VEK + + ENTNPG+ FL+ E E L + K
Sbjct: 62 --HILDELYSKDKEEIKNITISLVEKYTDFECENTNPGIVFLDEAKYKENREKLTNYYKK 119
Query: 113 ALREHVTIDEAEDVAKKSGAEIVKFKLGRGIIGALASIGYPLENYTYELLAYRRLENREK 172
L + V++D AE K G E +K+KLGRGIIGAL +I YTYELLAYR+ E K
Sbjct: 120 VLYDIVSVDYAEKFILKVGGEFIKYKLGRGIIGALGAIS-STPPYTYELLAYRKKEMWGK 178
Query: 173 ERKVNRDSVFDMDRRFYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKVMLAYESV 232
+R+++ SV +MD+ +P+T+DN D + ILI P+ PVL GIRGID +++L
Sbjct: 179 KREIDEKSVIEMDKETFPYTFDNYDYENEKILIAPNTPCPVLFGIRGID-AEILLKAMHK 237
Query: 233 IIEEDVKMVQLFKTNQSTDDHLQWKKIKDIRLYDNVIVRGKVASKYWE-KGRHVFFEIED 291
I E + +FKTN TD HL+ IKDI VIV G+V + + +G HV F++ D
Sbjct: 238 IEGEKPERFMIFKTNHGTDVHLRKMNIKDIYPNTGVIVYGRVVEEPRDIEGGHVIFKLSD 297
Query: 292 ETGKMRVAAFEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGVLTINLEKFYPVKLVPKREY 351
TG++ A+EPTK FR+ +RKL+ GD + V G V+E L IN+EK +KL K+
Sbjct: 298 GTGEIDCMAYEPTKGFRDIIRKLIVGDYIAVYGTVREKP--LGINIEKIKILKL-EKKFV 354
Query: 352 RKPRCPRCGGTMKSKGDY--LKCKRC----GYKMPKVLIPVEKPRDLEKKIYEVPPDARK 405
+ RCP CGGT+K+KG KCK+C Y K+ +E RDL+ YEVP AR+
Sbjct: 355 KDKRCPYCGGTLKAKGKKAGYKCKKCKKTIAYDEIKM---IEVERDLKTGFYEVPGSARR 411
Query: 406 HLSRPLVL 413
HLS+P+ L
Sbjct: 412 HLSKPIQL 419
>pir||C69229 conserved hypothetical protein MTH966 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622064|gb|AAB85462.1| (AE000870) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 444
Score = 311 bits (788), Expect = 1e-83
Identities = 191/424 (45%), Positives = 261/424 (61%), Gaps = 21/424 (4%)
Query: 3 LHIGIDDTDSPNGMCTTYLGALLYRELSRFGEPV-DLPRLIRLNPNIPYKTRGNGAVALT 61
LH+GIDDTDSP GMCTTY+ ++ +EL G + D PRLIRLNP P+KTRGNGAV T
Sbjct: 4 LHVGIDDTDSPEGMCTTYISCVIIQELKSCGFSLEDHPRLIRLNPFAPHKTRGNGAV--T 61
Query: 62 FDILDEYVDD---VKNIVVEHVEKLAEVDHENTNPGVAFLEGEVPEILRKFSLKALREHV 118
F +L E +D VK IV+E VE+LAE+D E TNPGV F GE+ E +R+F+L A+R +
Sbjct: 62 FTVLAESREDLNTVKGIVLEGVEELAELDSERTNPGVVFYTGEITEEMREFALSAIRRIL 121
Query: 119 TIDEAEDVAKKSGAEIVKFKLGRGIIGALASIGYPLENYTYELLAYRRLENREKERKVNR 178
I++A +A++ GAE+ FK GRGIIGALA+IG PL++ TYELL YR EN K R+++
Sbjct: 122 RIEDARRLAERVGAEVHGFKKGRGIIGALAAIGCPLDDSTYELLTYRVPENYGKPRRIDP 181
Query: 179 DSVFDMDRRFYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKVMLAYESVIIEEDV 238
+SV MD T+DN+D I I PH P+L GIRG ++ A E V ++E+V
Sbjct: 182 ESVARMDDETGSETFDNID--GDYIAIEPHTPCPILYGIRGESPEVLLRAMEMVRVDEEV 239
Query: 239 KMVQLFKTNQSTDDHLQ-WKKIKDIRLYDNVIVRGKVA-SKYWEKGRHVFFEIEDETGKM 296
+ +F+TNQ TD H+Q +I D+ + VRG+V +G HVFF + D++G++
Sbjct: 240 ERYCIFETNQHTDQHIQDAGRIADMETFGCYRVRGEVIDGPRVIEGGHVFFTLGDDSGQI 299
Query: 297 RVAAFEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGVLTINLEKFYPVKLVPKREYRKPRC 356
A+EPTK FR + +L+PGD + V GG+ T+N+EK + +L P C
Sbjct: 300 ECGAYEPTKDFRKIILELIPGDVLTVYGGIGAQG---TMNIEKIHLERLAELYVEENPIC 356
Query: 357 PRCGGTMKSKG--DYLKCKRCGYKM---PKVLIPVEKPRDLEKKIYEVPPDARKHLSRPL 411
CG MKS G KC CG ++ KV +E R + + YEVP AR+HLS+ L
Sbjct: 357 -TCGKRMKSAGRNKGFKCPSCGRRLRSSRKVRRALE--RSVGEGYYEVPTCARRHLSKQL 413
Query: 412 VLPG 415
V G
Sbjct: 414 VRMG 417
>gi|11499840 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7446473|pir||C69532 conserved hypothetical protein
AF2259 - Archaeoglobus fulgidus
>gi|2648257|gb|AAB88990.1| (AE000948) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 420
Score = 305 bits (772), Expect = 8e-82
Identities = 183/429 (42%), Positives = 257/429 (59%), Gaps = 17/429 (3%)
Query: 1 MLLHIGIDDTDSPNGMCTTYLGALLYRELSR-FGEPVDLPRLIRLNPNIPYKTRGNGAVA 59
M + +GIDDTDS GMCTTYL L + R G+ + PRLIRLNP IPYKTRGNGAV+
Sbjct: 1 MRVWVGIDDTDSSRGMCTTYLAVLAMERVERELGKVIGFPRLIRLNPTIPYKTRGNGAVS 60
Query: 60 LTFDILD--EYVDDVKNIVVEHVEKLAEVDHENTNPGVAFLEGEVPEILRKFSLKALREH 117
++ D E VD V +++EH A +D E TNPG F++ E+ L+ F+ KA+++
Sbjct: 61 FLVEVDDVGELVDVVNEVIIEH----AMLDDEKTNPGAVFVDEELAVKLKPFADKAIKDV 116
Query: 118 VTIDEAEDVAKKSGAEIVKFKLGRGIIGALASIGYPLENYTYELLAYRRLENREKERKVN 177
+ IDEA V K ++ K GRG+IGALA++G LE++T EL+AYR E ER+ +
Sbjct: 117 LQIDEALFVIGKYFIPHLRHKKGRGLIGALAAVGAELEDFTLELIAYRYPERFGTEREYD 176
Query: 178 RDSVFDMDRRFYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKVMLAYESVIIEED 237
+S FDMD YP T+DNVD ++ P+ PVL GIRG + A ESV E
Sbjct: 177 EESFFDMDYELYPQTFDNVDWCNDVVVCIPNTPCPVLYGIRGESVEALYKAMESV-KTEP 235
Query: 238 VKMVQLFKTNQSTDDHL-QWKKIKDIRLYDNVIVRGKVASKYWE-KGRHVFFEIEDETGK 295
V +F TN +TD HL +++ + Y + +RG+V + ++ +G HVFFEI+ + G
Sbjct: 236 VDRRMIFVTNHATDMHLIGEEEVHRLENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGS 295
Query: 296 MRVAAFEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGVLTINLEKFYPVKLVPKREYRKPR 355
++ AAFEPTK+FRN +R L GD V V G +K+ TINLEK V+L + P
Sbjct: 296 VKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKKD----TINLEKIQIVELAEIWVEKNPI 351
Query: 356 CPRCGGTMKS--KGDYLKCKRCGYKMPKVLIPVEKPRDLEKKIYEVPPDARKHLSRPLVL 413
CP CG M+S +G +CK+C K + L + R+L+ YEVPP AR+HLS+PL+
Sbjct: 352 CPSCGRRMESAGRGQGFRCKKCRTKADEKL-REKVERELQPGFYEVPPSARRHLSKPLIR 410
Query: 414 PGAEDKFLY 422
E + ++
Sbjct: 411 MNVEGRHIF 419
>gb|AAG20252.1| (AE005100) Vng2110c [Halobacterium sp. NRC-1]
Length = 420
Score = 225 bits (567), Expect = 9e-58
Identities = 154/416 (37%), Positives = 214/416 (51%), Gaps = 19/416 (4%)
Query: 5 IGIDDTDSPN-GMCTTYLGALLYRELSRFGEPVDLPRLIRLNPNIPYKTRGNGAVALTFD 63
+ +DDTDS GMCTTY L+ EL G V L+RLNP + YKTRGN A+A+ D
Sbjct: 4 VALDDTDSRTAGMCTTYAAHLVAEELRAAGCTVHRVLLVRLNPAVAYKTRGNAALAVHAD 63
Query: 64 ILDEY-VDDVKNIVVEHVEKLAEVDHENTNPGVAFL-EGEVPEILRKFSLKALREHVTID 121
+ + D + +V H AE D + TNPGV + + P + F+ +ALR +
Sbjct: 64 VDPQVGFDTARRVVDAH----AETDDDRTNPGVVVAHDADAPAPVAAFAHRALRADIDPA 119
Query: 122 EAEDVAKKSGAEIVKFKLGRGIIGALASIGY--PLENYTYELLAYRRLENREKERKVNRD 179
+A +A G + GRG++GALA++G ++TYE + YR + R+V+ D
Sbjct: 120 DAAALAAAHGYRTAGWGTGRGVVGALAAVGAWTAFSDWTYECIQYRPRDRWGTTRRVDAD 179
Query: 180 SVFDMDRRFYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKVMLAYESVIIEEDVK 239
SVF YP +D VD + ++ PH P+L GIRG D V A + I E
Sbjct: 180 SVFAAADDAYPAAWDTVDHVEDDLVCVPHTPGPILYGIRGDDADAVQ-AVAADIDSEPPH 238
Query: 240 MVQLFKTNQSTDDHLQWKKIKDIRLYDNVIVRGKVAS-KYWEKGRHVFFEIEDETGKMRV 298
+LF TNQ TD HL + D R V G VA +G HVF I D +
Sbjct: 239 ARELFVTNQGTDAHLADAPLADARDGRGYRVEGVVADHPETREGGHVFVPITDGEATLAC 298
Query: 299 AAFEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGVLTINLEKFYPVKLVPKREYRKPRCPR 358
AFEPTK+FR++VR L PGD + G V + T+ LEKF V+ + + P CP
Sbjct: 299 VAFEPTKRFRDHVRNLRPGDRITACGEVADG----TLKLEKF-AVRGLTRTTPTTPVCPD 353
Query: 359 CGGTMKSKG--DYLKCKRCGYKMPKVLIPVEKPRDLEKKIYEVPPDARKHLSRPLV 412
CG TM+S G +C+ C P + + R L+ YEVPP AR+H+++PLV
Sbjct: 354 CGTTMESAGATQGYRCRDCSTTAPGTAHRLIE-RALDPGWYEVPPCARRHIAQPLV 408
>gb|AAK40597.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 443
Score = 203 bits (512), Expect = 2e-51
Identities = 145/422 (34%), Positives = 221/422 (52%), Gaps = 26/422 (6%)
Query: 5 IGIDDTDSPNGMCTTYLGALLYRELSRFGEPV--DLPRLIRLNPNIPYKTRGNGAVALTF 62
IGIDD DS CTT+ +L L + + DLP L+RLNPNIP+KTRGN ++ L
Sbjct: 5 IGIDDHDSYKFGCTTHFSVILTSYLYKNHSTILLDLPYLVRLNPNIPWKTRGNASIKLIV 64
Query: 63 DI---LDEYVDDVKNIVVEHVEKLAEVDHENTNPGVAFLEGE----VPEILRKFSLKALR 115
+ E D + + +E+V+ ++ PG+A +E + + + L F +K +
Sbjct: 65 EFNGTKKELADIIFSYSIEYVKDVSLALEHGRKPGIAIMEYDKYITLFDKLYDFYIKGIS 124
Query: 116 EHVTIDEAEDVAKKSGAEIVKFKLGRGIIGALASIGYPLENYTYELLAYRRLENREKERK 175
+ + ID A+ A+K+ E+ + RGIIG++A +G +YTYEL+ YR+ EN K+R
Sbjct: 125 DIIPIDYAKKFAEKNDIEL---RGDRGIIGSIAGLGMS-GDYTYELITYRKKENWLKKRM 180
Query: 176 VNRDSVFDMDRRFYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKVMLAYESVIIE 235
+N+DSV +D +P T+ N D T LITPHG DP+L GIRG ++ A E +
Sbjct: 181 INKDSVKRVDESTFPLTFANYDYINDTPLITPHGTDPILYGIRGASIQHLIKAMELIESN 240
Query: 236 EDVKMVQLFKTNQSTDDHLQWKKIKDIRLYDNVIVRGKVASKYWEKGRHVFFEIEDETGK 295
ED+ +FKTNQSTD H Q KI + R Y +V + +G V E D
Sbjct: 241 EDIDFFAIFKTNQSTDIHFQ--KIGN-RFYQETKKVVQVKNVRILEGGDVIVETTDND-- 295
Query: 296 MRVAAFEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGV-LTINLEKFYPVKLVPKREYRKP 354
+ ++ T + + + L GDE++ G VK I LE+F +KL E P
Sbjct: 296 -ILFVYKETGELNSAAKLLKKGDEIVAYGAVKPSIAYGKIIELERFEILKLY-DLELVNP 353
Query: 355 RCPRCGGTMKS--KGDYLKCKRCGYKMPKVLIPVEK-PRDLEKKIYEVPPDARKHLSRPL 411
+CPRCGG+ S K +CK+C Y + + R+L +Y+ + +HL++P+
Sbjct: 354 KCPRCGGSTNSLGKNKGYRCKKCKYIINTTNKSTKNIMRNLSLGMYQT--RSYRHLTKPI 411
Query: 412 VL 413
L
Sbjct: 412 FL 413
>emb|CAC11685.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 440
Score = 195 bits (490), Expect = 9e-49
Identities = 148/446 (33%), Positives = 211/446 (47%), Gaps = 45/446 (10%)
Query: 3 LHIGIDDTDSPNGMCTTYLGALLYRELSRFGEPVDLPRLIRLNPNIPYKTRGNGAVALTF 62
+ I IDDTDSP+ MCTTYL + E + + PRL+RLNPNI +KTRGNGAV L
Sbjct: 1 MFIAIDDTDSPDRMCTTYLVLRMIYESKL--DVIGNPRLVRLNPNIRFKTRGNGAVVLHL 58
Query: 63 -----------------------DILDEYVDDVKNIVVEHVEKLAEVDHENTNPGVAFLE 99
+I D+ I VE+ + D+ +T+PG+ +
Sbjct: 59 GHGTGRSHRIGDIHGKPIMSYDREIGSPDASDLMEIARNLVEEYSVTDYYSTHPGIVVSD 118
Query: 100 GEVPEILRKFSLKALREHVTIDEAEDVAKKSGAEIVKFKLGRGIIGALASIGYPLENYTY 159
+ R F +AL E + + +AE K SGA K K G GI+G+ A++ +P E YTY
Sbjct: 119 HPLD---RSFYRRALEEEIPVSDAEKFIKDSGASFYKLKDGHGIVGSAAALAWPSERYTY 175
Query: 160 ELLAYRRLENREKERKVNRDSVFDMDRRFYPFTYDNVDPFKKTILITPHGKDPVLVGIRG 219
E+LAYR +R DR Y T++NVD + I PH K PV+ GIRG
Sbjct: 176 EMLAYRYPTPLAMQRDEKMMLASMADR--YEGTFNNVDLRNEYPAIFPHPKTPVIYGIRG 233
Query: 220 IDKGKVMLAYESV--IIEEDVKMVQLFKTNQSTDDHL--QWKKIKDIRLYDNVIVRGKVA 275
+ ++ A +++ D + +F TNQ TDDH+ I+D+ Y + V+
Sbjct: 234 FYQHSLLEASDAINETGHIDYEGRIIFITNQGTDDHIIHDPDDIEDLHSY--ALTGQVVS 291
Query: 276 SKYWEKGRHVFFEIEDETGKMRVAAFEPTKKFRNYVRKLLPGDEVIVAGGVKEHEGVLTI 335
G H F + + AAFEPTK+FR+ +L GD V G +
Sbjct: 292 DPISVPGGHYFLKFSYRKRYITAAAFEPTKEFRSIFSRLRSGDLVTFYGSYVNG----NL 347
Query: 336 NLEKFYPVKLVPKREYRKPRCPRCGGTMKSKGDY-LKCKRCGYKMPKVLIPVEKPRDLEK 394
N+EK + P C CG SKG +C +CG + + VE PRD+
Sbjct: 348 NVEKMIVHTVAKIYRTENPVCNVCGVRTISKGQSDFRCPKCGRRY-RSRDFVEVPRDITP 406
Query: 395 KIYEVPPDARKHLSRPLVLPGAEDKF 420
Y+VP AR+HLS P + E++F
Sbjct: 407 GKYDVPVVARRHLSMPFEI---EERF 429
>pir||D72653 hypothetical protein APE0656 - Aeropyrum pernix (strain K1)
>gi|5104313|dbj|BAA79628.1| (AP000060) 464aa long
hypothetical protein [Aeropyrum pernix]
Length = 464
Score = 173 bits (434), Expect = 3e-42
Identities = 143/426 (33%), Positives = 202/426 (46%), Gaps = 25/426 (5%)
Query: 1 MLLHIGIDDTDSPNGMCTTYLGALLYRELSRFG--EPVDLPRLIRLNPNIPYKTRGNGAV 58
+LL+IG DD D G CTT+ LL L+R G D P L RLNP IP+KTRGN AV
Sbjct: 7 LLLNIGFDDVDFRGGGCTTHFAGLLLHTLARRGGYTLADYPILARLNPGIPWKTRGNAAV 66
Query: 59 ALTFDIL--DEYVDDVKNIVVEHVEKLAEVDHE-NTNPGVAFLEGEVPEILRKFSL--KA 113
L DE +D V+ + + E PG+A L G+ P R SL +A
Sbjct: 67 VLRLWARGEDEALDAVETALQLMWDYTGGRPSEAGKGPGMAVLVGD-PYRPRLESLYKRA 125
Query: 114 LREHVTIDEAEDVAKKSGAEIVKFKLGRGIIGALASIGY--PLENYTYELLAYRRLENRE 171
L + + A +K G + GRGIIGA AS+ P E+YT+EL+AYRR E
Sbjct: 126 LAGVLDRESAAGAVEKEGGRVYG---GRGIIGAAASLAALGPAEDYTWELVAYRRPEAWG 182
Query: 172 KERKVNRDSVFDMDRRFYPFTYDNVDPFKKTILITPHGKDPVLVGIRGIDKGKVMLAYES 231
R V+ ++ ++ P T++N+D + + P G DPVL G RG D ++ Y
Sbjct: 183 AARCVDWEAAVKVESTLPPCTFNNIDMAEGRVAAAPAGPDPVLAGFRG-DCPHLLPRYSE 241
Query: 232 VIIEEDVKMVQLFKTNQSTDDHLQWKKIKDIRLYDNVIVRGKV-ASKYWEKGRHVFFEIE 290
+ EE V L+++NQ TD + + I Y V V +V + G HV
Sbjct: 242 ALCEEPHFWV-LYRSNQHTDAPRGLE--RRIYPYSYVTVEAEVLGTPQTLPGGHVVVRAS 298
Query: 291 DETGKMRVAAFEPTKKFRNYVRKLLPGDEVIVAGGVKEH--EGVLTINLEKFYPVKLVPK 348
G+ + + R L PGD V G V+ + G+ T+ ++K +L P
Sbjct: 299 TGEGEADLVFYREASPLNRVARLLAPGDSVEAMGSVRPYRPRGLWTVAVDKLVVRRLAPV 358
Query: 349 REYRKPRCPRCGGTMKS--KGDYLKCKRCGYKMPKVLIPVEK--PRDLEKKIYEVPPDAR 404
E P CPRCG M+S +G +C RCGY + P+E PR L+ +Y
Sbjct: 359 YERHSPLCPRCGARMESAGRGRGYRCPRCGYASREAR-PLETPVPRALQPGVYTPREGRL 417
Query: 405 KHLSRP 410
+HL+ P
Sbjct: 418 RHLTAP 423
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.142 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171319207
Number of Sequences: 2977
Number of extensions: 7741440
Number of successful extensions: 17638
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17588
Number of HSP's gapped (non-prelim): 9
length of query: 422
length of database: 189,106,746
effective HSP length: 54
effective length of query: 368
effective length of database: 156,788,448
effective search space: 57698148864
effective search space used: 57698148864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)