BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0252 (PAB0252) DE:Hypothetical protein
(209 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75152 hypothetical protein PAB0252 - Pyrococcus abyssi (st... 434 e-121
pir||F71193 hypothetical protein PH1822 - Pyrococcus horikoshii ... 400 e-111
pir||B69043 conserved hypothetical protein MTH1325 - Methanobact... 230 9e-60
gi|11499126 conserved hypothetical protein [Archaeoglobus fulgid... 196 2e-49
emb|CAC12421.1| (AL445067) conserved hypothetical protein [Therm... 194 7e-49
sp|Q60345|Y038_METJA HYPOTHETICAL PROTEIN MJ0038 >gi|2128092|pir... 189 2e-47
emb|CAB57553.1| (Y18930) hypothetical protein [Sulfolobus solfat... 137 1e-31
gb|AAK41045.1| Conserved hypothetical protein [Sulfolobus solfat... 137 1e-31
gb|AAG19545.1| (AE005045) Vng1168c [Halobacterium sp. NRC-1] 120 1e-26
pir||F72639 hypothetical protein APE0550 - Aeropyrum pernix (str... 102 4e-21
>pir||E75152 hypothetical protein PAB0252 - Pyrococcus abyssi (strain Orsay)
>gi|5457810|emb|CAB49300.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 209
Score = 434 bits (1105), Expect = e-121
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 1 MDYHRRHPYHPSMRKKRHVEYEEYAYVLDYLPNGYPNLETGQYLGRPVAQVIGEKAFTLL 60
MDYHRRHPYHPSMRKKRHVEYEEYAYVLDYLPNGYPNLETGQYLGRPVAQVIGEKAFTLL
Sbjct: 1 MDYHRRHPYHPSMRKKRHVEYEEYAYVLDYLPNGYPNLETGQYLGRPVAQVIGEKAFTLL 60
Query: 61 EVTPKTDLMLYERVFIGKGERDKVSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFI 120
EVTPKTDLMLYERVFIGKGERDKVSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFI
Sbjct: 61 EVTPKTDLMLYERVFIGKGERDKVSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFI 120
Query: 121 KFFNVAPPITNRLHSLELLPGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIA 180
KFFNVAPPITNRLHSLELLPGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIA
Sbjct: 121 KFFNVAPPITNRLHSLELLPGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIA 180
Query: 181 KRILDELQDKDKYKIFVGPNRIFRESNEK 209
KRILDELQDKDKYKIFVGPNRIFRESNEK
Sbjct: 181 KRILDELQDKDKYKIFVGPNRIFRESNEK 209
>pir||F71193 hypothetical protein PH1822 - Pyrococcus horikoshii
>gi|3258258|dbj|BAA30941.1| (AP000007) 205aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 205
Score = 400 bits (1018), Expect = e-111
Identities = 186/205 (90%), Positives = 201/205 (97%)
Query: 1 MDYHRRHPYHPSMRKKRHVEYEEYAYVLDYLPNGYPNLETGQYLGRPVAQVIGEKAFTLL 60
M+Y+RRHPYHPSMRKKRH EYEEYAYVLDYLPNGYP+LETGQYLG+PVAQVIGEKAFTLL
Sbjct: 1 MNYYRRHPYHPSMRKKRHAEYEEYAYVLDYLPNGYPDLETGQYLGKPVAQVIGEKAFTLL 60
Query: 61 EVTPKTDLMLYERVFIGKGERDKVSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFI 120
EVTPKTDLMLYER+FIGKGERDK+SMINRKL+Y+DLTDTAKAELPY+LEEI+K NE+RF+
Sbjct: 61 EVTPKTDLMLYERIFIGKGERDKISMINRKLSYDDLTDTAKAELPYILEEIIKKNEERFV 120
Query: 121 KFFNVAPPITNRLHSLELLPGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIA 180
KFFNVAPPITNRLHSLELLPGIGKKHMW I+EEREKKPFE+FEDLKKRVKGLPDPVKMIA
Sbjct: 121 KFFNVAPPITNRLHSLELLPGIGKKHMWSIIEEREKKPFENFEDLKKRVKGLPDPVKMIA 180
Query: 181 KRILDELQDKDKYKIFVGPNRIFRE 205
+RILDELQDKDKYKIFVGP RIFRE
Sbjct: 181 RRILDELQDKDKYKIFVGPTRIFRE 205
>pir||B69043 conserved hypothetical protein MTH1325 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622431|gb|AAB85803.1| (AE000896) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 193
Score = 230 bits (581), Expect = 9e-60
Identities = 114/186 (61%), Positives = 143/186 (76%), Gaps = 8/186 (4%)
Query: 22 EEYAYVLDYLPNGYPNLETGQYLGRPVAQVIGEKAFTLLEVTPK--TDLMLYERVFIGKG 79
EEYA +LDYLP GY + G + RPVAQ +G+ FTLLE+TP+ DL ++E V+IGKG
Sbjct: 2 EEYAIILDYLPLGYMSEGFGTFKKRPVAQALGKDEFTLLELTPRPDVDLEIHEEVYIGKG 61
Query: 80 ERDKVSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFIKFFNVAPPITNRLHSLELL 139
+RDK++ INR+L +N+LT TA+ ELPYV+EEI+K+NEDRF+KFFN A PI+ RLH LELL
Sbjct: 62 KRDKIARINRRLRHNELTATARVELPYVVEEIIKSNEDRFVKFFNEAGPISTRLHQLELL 121
Query: 140 PGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIAKRILDEL------QDKDKY 193
PGIGKKHMWDIL+ RE+KPFESFED+K RV L DPVK+I +R+L EL + K KY
Sbjct: 122 PGIGKKHMWDILKAREEKPFESFEDIKNRVPMLSDPVKLIVRRVLMELDVEGAKRGKRKY 181
Query: 194 KIFVGP 199
IF P
Sbjct: 182 NIFTRP 187
>gi|11499126 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429860|pir||B69441 conserved hypothetical protein
AF1531 - Archaeoglobus fulgidus
>gi|2649033|gb|AAB89717.1| (AE000997) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 195
Score = 196 bits (493), Expect = 2e-49
Identities = 96/186 (51%), Positives = 136/186 (72%), Gaps = 3/186 (1%)
Query: 14 RKKRHVEYEEYAYVLDYLPNGYPNLETGQYLGRPVAQVIGEKAFTLLEVTPKTDL--MLY 71
R + + E+YAYVLD++P G+P+ + + P+AQV+GE+ FTLLEV+ + ++
Sbjct: 8 RSEGKEKLEDYAYVLDFMPYGHPDDKRPIHRREPLAQVVGERNFTLLEVSIRKGKQPLVM 67
Query: 72 ERVFIGKGERDKVSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFIKFFNVAPPITN 131
+RV+IGKGERD V I R+L Y DLT AK ELPYV+E I+K +E +++ FFN A IT
Sbjct: 68 DRVYIGKGERDVVYKIKRRLRYEDLTPAAKTELPYVIEHIIKQDEKKYVDFFNKADSITT 127
Query: 132 RLHSLELLPGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIAKRILDELQD-K 190
R+H LELLPG+GKK MW I+EER+K+PFESFED+ +RVKG+ P K+I RI+ E+++ +
Sbjct: 128 RMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEIKNPQ 187
Query: 191 DKYKIF 196
KYK+F
Sbjct: 188 TKYKLF 193
>emb|CAC12421.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 182
Score = 194 bits (488), Expect = 7e-49
Identities = 102/181 (56%), Positives = 128/181 (70%), Gaps = 7/181 (3%)
Query: 22 EEYAYVLDYLPNGYPNLETGQYLGRPVAQVIGEKAFTLLEVTPKTD--LMLYERVFIGKG 79
EEYAYVLDYLP G P + Y PV IGE F LLE+ PK + + + E+V+IGK
Sbjct: 2 EEYAYVLDYLPQGRP--DDRSYRSSPVVLAIGETEFKLLELIPKPNEIITVGEKVYIGKN 59
Query: 80 E--RDKVSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFIKFFNVAPPITNRLHSLE 137
R K+ + R++ Y DLT A++ELPYVLE+IV E RFI+FFN A PI RLHSLE
Sbjct: 60 PEMRKKILSVRRRIMYKDLTSAAQSELPYVLEDIVSKQEGRFIEFFNKAEPINARLHSLE 119
Query: 138 LLPGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIAKRILDELQDK-DKYKIF 196
LLPG+G K MW ILEER+KKPF SF DL++RVK + +P KMI RI+DEL+D+ +KYK+F
Sbjct: 120 LLPGLGNKTMWAILEERKKKPFSSFADLQERVKSIHNPQKMIVNRIIDELKDRFEKYKLF 179
Query: 197 V 197
V
Sbjct: 180 V 180
>sp|Q60345|Y038_METJA HYPOTHETICAL PROTEIN MJ0038 >gi|2128092|pir||F64304 conserved
hypothetical protein MJ0038 - Methanococcus jannaschii
>gi|1498798|gb|AAB98019.1| (U67462) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 217
Score = 189 bits (476), Expect = 2e-47
Identities = 100/188 (53%), Positives = 131/188 (69%), Gaps = 11/188 (5%)
Query: 14 RKKRHVEYEEYAYVLDYLPNGYPNLETGQYLGRPVAQVIGEKAFTLLEVTPK--TDLMLY 71
+K + ++E YA+VLDYLP GYP+ P+ Q +GE F L+E+ PK D+ L
Sbjct: 18 KKNKPQKFENYAWVLDYLPYGYPDKPD-----EPIVQGLGEYQFLLMEMIPKPNVDIELG 72
Query: 72 ERVFIGKGERDKVSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFIKFFNVAPPITN 131
ERV+IGKG+RDK+ + R + Y LT TAK+EL YV+ E VK EDRF++FFN PPIT
Sbjct: 73 ERVYIGKGKRDKIDHVRRMIKYEQLTPTAKSELLYVVMEAVKIQEDRFVRFFNECPPITT 132
Query: 132 RLHSLELLPGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIAKRILDELQD-- 189
RLH+LELLP I KK+MW I+EERE K FESF+D ++R+ +PV++IAKRI EL D
Sbjct: 133 RLHTLELLPEIKKKYMWKIIEEREAKKFESFKDFEERIG--KNPVRIIAKRIEKELSDDK 190
Query: 190 KDKYKIFV 197
KDKY +FV
Sbjct: 191 KDKYYLFV 198
>emb|CAB57553.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 208
Score = 137 bits (341), Expect = 1e-31
Identities = 78/190 (41%), Positives = 118/190 (62%), Gaps = 8/190 (4%)
Query: 13 MRKKRHVEYEEYAYVLDYLPNGYPNLETGQYLGRPVAQVIGEKAFTLLEVTPKT---DLM 69
M++KR V E YVLDY+ G P + + +P+ Q +GE F LLE+TP + D +
Sbjct: 1 MQRKRIVR-ERVVYVLDYMREGNPLDKHKFHRDKPLIQAVGEDYFLLLELTPLSYNLDFL 59
Query: 70 LYERVFIGKGERDKVSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFIKFFNVAPPI 129
+++ + KV + ++Y DLT ++ LP +L +IV E F++ FN A P+
Sbjct: 60 PEDKIELDSNSSVKV---DAHISYEDLTSVSRDNLPKILYKIVFEKEKVFVEIFNKAEPL 116
Query: 130 TNRLHSLELLPGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIAKRILDELQD 189
T RLH+LELLP IGKK + ILEER+KKPFESF+D++ R+ G+ D ++ +RI+ E+Q
Sbjct: 117 TLRLHALELLPNIGKKTLRIILEERKKKPFESFKDIESRI-GVKDVASILVERIIKEMQG 175
Query: 190 KDKYKIFVGP 199
+KY +FV P
Sbjct: 176 GEKYYLFVYP 185
>gb|AAK41045.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 208
Score = 137 bits (341), Expect = 1e-31
Identities = 78/190 (41%), Positives = 118/190 (62%), Gaps = 8/190 (4%)
Query: 13 MRKKRHVEYEEYAYVLDYLPNGYPNLETGQYLGRPVAQVIGEKAFTLLEVTPKT---DLM 69
M++KR V E YVLDY+ G P + + +P+ Q +GE F LLE+TP + D +
Sbjct: 1 MQRKRIVR-ERVVYVLDYMREGNPLDKHKFHRDKPLIQAVGEDYFLLLELTPLSYNLDFL 59
Query: 70 LYERVFIGKGERDKVSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFIKFFNVAPPI 129
+++ + KV + ++Y DLT ++ LP +L +IV E F++ FN A P+
Sbjct: 60 PEDKIELDSNSSVKV---DAHISYEDLTSVSRDNLPKILYKIVFEKEKVFVEIFNKAEPL 116
Query: 130 TNRLHSLELLPGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIAKRILDELQD 189
T RLH+LELLP IGKK + ILEER+KKPFESF+D++ R+ G+ D ++ +RI+ E+Q
Sbjct: 117 TLRLHALELLPNIGKKTLRIILEERKKKPFESFKDIESRI-GVKDVASILVERIIKEMQG 175
Query: 190 KDKYKIFVGP 199
+KY +FV P
Sbjct: 176 GEKYYLFVYP 185
>gb|AAG19545.1| (AE005045) Vng1168c [Halobacterium sp. NRC-1]
Length = 197
Score = 120 bits (299), Expect = 1e-26
Identities = 76/178 (42%), Positives = 113/178 (62%), Gaps = 7/178 (3%)
Query: 23 EYAYVLDYLPNGYPNLETGQYLGRPVAQVIGEKAFTLLEVTPKTD--LMLYERVFIGKGE 80
E A VLD+L +G + Y V + FTL E++ +D + + +RV + + E
Sbjct: 20 ESAVVLDFLAHG--RSDGRSYGDGAVGYAVSTIDFTLYELSLSSDADIGILDRVQV-RPE 76
Query: 81 RDKVSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFIKFFNVAPPITNRLHSLELLP 140
+ R++ Y+DL+D A++EL YV+E++V NE RF+ F+N A PI+ RLH L LLP
Sbjct: 77 FETGIDRGREVEYDDLSDGARSELDYVVEDVVDANERRFVDFYNDAQPISLRLHQLNLLP 136
Query: 141 GIGKKHMWDILEEREKK-PFESFEDLKKRVKGLPDPVKMIAKRILDELQDKD-KYKIF 196
GIG+K +ILEER+++ PFESF D+ +RV GL P ++I +RILDE++D D KY F
Sbjct: 137 GIGEKLRDNILEERKRRGPFESFADVSERVDGLHTPQEVIVERILDEIRDPDLKYYNF 194
>pir||F72639 hypothetical protein APE0550 - Aeropyrum pernix (strain K1)
>gi|5104203|dbj|BAA79518.1| (AP000060) 326aa long
hypothetical protein [Aeropyrum pernix]
Length = 326
Score = 102 bits (251), Expect = 4e-21
Identities = 53/118 (44%), Positives = 80/118 (66%), Gaps = 4/118 (3%)
Query: 84 VSMINRKLTYNDLTDTAKAELPYVLEEIVKNNEDRFIKFFNVAPPITNRLHSLELLPGIG 143
VS ++Y DLTD A+A LP + ++V+ ED F++FFNVA PI R+H+LE L G+G
Sbjct: 176 VSTPRDPISYQDLTDVARATLPDAVRKLVREREDFFVEFFNVAEPINIRIHALEALKGVG 235
Query: 144 KKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIAKRILDELQDKD--KYKIFVGP 199
KK +L ERE++ F SFE++KK +K DP + +A++I++E++ +D KY FV P
Sbjct: 236 KKMARHLLLERERRRFTSFEEVKKILK--IDPAEALAEKIMEEIECRDTVKYYFFVEP 291
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.141 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83326159
Number of Sequences: 2977
Number of extensions: 3638052
Number of successful extensions: 9786
Number of sequences better than 1.0e-10: 10
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9763
Number of HSP's gapped (non-prelim): 11
length of query: 209
length of database: 189,106,746
effective HSP length: 53
effective length of query: 156
effective length of database: 157,386,935
effective search space: 24552361860
effective search space used: 24552361860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)