BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0254 (PAB0254) DE:Hypothetical protein
(283 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75152 hypothetical protein PAB0254 - Pyrococcus abyssi (st... 547 e-155
pir||A71194 hypothetical protein PH1825 - Pyrococcus horikoshii ... 480 e-135
pir||A69186 hypothetical protein MTH647 - Methanobacterium therm... 178 5e-44
>pir||H75152 hypothetical protein PAB0254 - Pyrococcus abyssi (strain Orsay)
>gi|5457813|emb|CAB49303.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 283
Score = 547 bits (1394), Expect = e-155
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNVEIAKSAAAGADLLII 60
MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNVEIAKSAAAGADLLII
Sbjct: 1 MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNVEIAKSAAAGADLLII 60
Query: 61 ATDADRVGRELAERLFNELSEMVGHIERMKIPIGHDLEHIDVELVRKELKNALVRAGLKT 120
ATDADRVGRELAERLFNELSEMVGHIERMKIPIGHDLEHIDVELVRKELKNALVRAGLKT
Sbjct: 61 ATDADRVGRELAERLFNELSEMVGHIERMKIPIGHDLEHIDVELVRKELKNALVRAGLKT 120
Query: 121 LQRVPEYMELRRDYLDLKGKFEELQKEKEELLKRLEELEAKYNEVQDELKRLEVENSRLN 180
LQRVPEYMELRRDYLDLKGKFEELQKEKEELLKRLEELEAKYNEVQDELKRLEVENSRLN
Sbjct: 121 LQRVPEYMELRRDYLDLKGKFEELQKEKEELLKRLEELEAKYNEVQDELKRLEVENSRLN 180
Query: 181 EMLKKRPKVYDLKKKWDELFPGVELPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKLVE 240
EMLKKRPKVYDLKKKWDELFPGVELPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKLVE
Sbjct: 181 EMLKKRPKVYDLKKKWDELFPGVELPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKLVE 240
Query: 241 DLLKTVYLSLKLREEEEVEVIREGIEEIIPEIDSGGEGGESEG 283
DLLKTVYLSLKLREEEEVEVIREGIEEIIPEIDSGGEGGESEG
Sbjct: 241 DLLKTVYLSLKLREEEEVEVIREGIEEIIPEIDSGGEGGESEG 283
>pir||A71194 hypothetical protein PH1825 - Pyrococcus horikoshii
>gi|3258261|dbj|BAA30944.1| (AP000007) 291aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 291
Score = 480 bits (1223), Expect = e-135
Identities = 246/290 (84%), Positives = 270/290 (92%), Gaps = 8/290 (2%)
Query: 1 MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNVEIAKSAAAGADLLII 60
MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTN+EIAKSAAAGADLLII
Sbjct: 1 MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNIEIAKSAAAGADLLII 60
Query: 61 ATDADRVGRELAERLFNELSEMVGHIERMKIPIGHDLEHIDVELVRKELKNALVRAGLKT 120
ATDADRVGRELAE+LFNELSEMVGHIERMK+P+GHDLEHIDVELVRKELKNALVRAGLKT
Sbjct: 61 ATDADRVGRELAEKLFNELSEMVGHIERMKLPLGHDLEHIDVELVRKELKNALVRAGLKT 120
Query: 121 LQRVPEYMELRRDYLDLKGKFEELQKEKEELLKRLEELEAKYNEVQDELKRLEVENSRLN 180
LQR+PEYMELR+DYLDLKGKFEE++KE+ ELLK+LEE E+KY E+Q+E+KRLE ENSRL
Sbjct: 121 LQRLPEYMELRKDYLDLKGKFEEVEKERNELLKKLEEAESKYLELQNEIKRLEAENSRLT 180
Query: 181 EMLKKRPKVYDLKKKWDELFPGVELPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKLVE 240
+ LKKRPKVY+LKKKW+ELFPGV+LPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKL+E
Sbjct: 181 DTLKKRPKVYNLKKKWEELFPGVKLPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKLIE 240
Query: 241 DLLKTVYLSLKLRE--------EEEVEVIREGIEEIIPEIDSGGEGGESE 282
+LL+TVYLSLKL E +EE E + E IEEIIPEIDS GEGG+SE
Sbjct: 241 ELLRTVYLSLKLTESQMKEEEIKEEKEEVIESIEEIIPEIDSEGEGGDSE 290
>pir||A69186 hypothetical protein MTH647 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621729|gb|AAB85152.1| (AE000845)
unknown [Methanobacterium thermoautotrophicum]
Length = 280
Score = 178 bits (448), Expect = 5e-44
Identities = 108/275 (39%), Positives = 163/275 (59%), Gaps = 25/275 (9%)
Query: 4 VDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNVEIAKSAAAGADLLIIATD 63
VDVRI+VEGASDVE +S+ALQ ++LG++Y+ITISSI+PTT++EIA A GAD+++IATD
Sbjct: 7 VDVRIIVEGASDVESVSRALQRVSLGAKYHITISSIVPTTSLEIALRAVEGADIVLIATD 66
Query: 64 ADRVGRELAERLFNELSEMVGHIERMKIPIGHDLEHIDVELVRKELKNALVRAGLKTL-- 121
D+ GRELA++ L VGHIERMK+P GHD+E++D +L+R+E++NA++RAGL+TL
Sbjct: 67 VDQTGRELADKFREALRGHVGHIERMKLPYGHDVEYLDPDLIREEIENAIIRAGLQTLTG 126
Query: 122 -------------------QRVPEYMELRRDYLDLKGKFEELQKEKEELLKRLEELEAKY 162
+ V E LR + L+G+ E + E L L +LE K+
Sbjct: 127 IRSLSDMKERLEECREKLDETVAENTALRDENTRLQGEVEAGNERIESLRGELSQLEEKF 186
Query: 163 NEVQDELKRLEVENSRLNEMLKKRPKVYDLKKKWDELFPGVELPEEELFSKAVKTLNLAG 222
++ E +LE S L + K+ + + + W E F G E + E + G
Sbjct: 187 RLLEGEYSKLETRFSELED--KELLETFSITDLWRETF-GEEPDDLERIYFVTDHIKPEG 243
Query: 223 KVIVGQGYIYAEDEKLVEDLLKTVYLSLKLREEEE 257
+I+GQG I A + + L+ + +L E++E
Sbjct: 244 -IILGQGSIAAPSREDAVEWLRIIKSALVFTEKDE 277
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.313 0.136 0.357
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99419815
Number of Sequences: 2977
Number of extensions: 4424237
Number of successful extensions: 42126
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42108
Number of HSP's gapped (non-prelim): 3
length of query: 283
length of database: 189,106,746
effective HSP length: 62
effective length of query: 221
effective length of database: 152,000,552
effective search space: 33592121992
effective search space used: 33592121992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 164 (68.3 bits)