BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0254 (PAB0254) DE:Hypothetical protein
         (283 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75152 hypothetical protein PAB0254 - Pyrococcus abyssi (st...   547  e-155
pir||A71194 hypothetical protein PH1825 - Pyrococcus horikoshii ...   480  e-135
pir||A69186 hypothetical protein MTH647 - Methanobacterium therm...   178  5e-44

>pir||H75152 hypothetical protein PAB0254 - Pyrococcus abyssi (strain Orsay)
           >gi|5457813|emb|CAB49303.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 283
           
 Score =  547 bits (1394), Expect = e-155
 Identities = 283/283 (100%), Positives = 283/283 (100%)

Query: 1   MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNVEIAKSAAAGADLLII 60
           MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNVEIAKSAAAGADLLII
Sbjct: 1   MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNVEIAKSAAAGADLLII 60

Query: 61  ATDADRVGRELAERLFNELSEMVGHIERMKIPIGHDLEHIDVELVRKELKNALVRAGLKT 120
           ATDADRVGRELAERLFNELSEMVGHIERMKIPIGHDLEHIDVELVRKELKNALVRAGLKT
Sbjct: 61  ATDADRVGRELAERLFNELSEMVGHIERMKIPIGHDLEHIDVELVRKELKNALVRAGLKT 120

Query: 121 LQRVPEYMELRRDYLDLKGKFEELQKEKEELLKRLEELEAKYNEVQDELKRLEVENSRLN 180
           LQRVPEYMELRRDYLDLKGKFEELQKEKEELLKRLEELEAKYNEVQDELKRLEVENSRLN
Sbjct: 121 LQRVPEYMELRRDYLDLKGKFEELQKEKEELLKRLEELEAKYNEVQDELKRLEVENSRLN 180

Query: 181 EMLKKRPKVYDLKKKWDELFPGVELPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKLVE 240
           EMLKKRPKVYDLKKKWDELFPGVELPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKLVE
Sbjct: 181 EMLKKRPKVYDLKKKWDELFPGVELPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKLVE 240

Query: 241 DLLKTVYLSLKLREEEEVEVIREGIEEIIPEIDSGGEGGESEG 283
           DLLKTVYLSLKLREEEEVEVIREGIEEIIPEIDSGGEGGESEG
Sbjct: 241 DLLKTVYLSLKLREEEEVEVIREGIEEIIPEIDSGGEGGESEG 283


>pir||A71194 hypothetical protein PH1825 - Pyrococcus horikoshii
           >gi|3258261|dbj|BAA30944.1| (AP000007) 291aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 291
           
 Score =  480 bits (1223), Expect = e-135
 Identities = 246/290 (84%), Positives = 270/290 (92%), Gaps = 8/290 (2%)

Query: 1   MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNVEIAKSAAAGADLLII 60
           MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTN+EIAKSAAAGADLLII
Sbjct: 1   MTIVDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNIEIAKSAAAGADLLII 60

Query: 61  ATDADRVGRELAERLFNELSEMVGHIERMKIPIGHDLEHIDVELVRKELKNALVRAGLKT 120
           ATDADRVGRELAE+LFNELSEMVGHIERMK+P+GHDLEHIDVELVRKELKNALVRAGLKT
Sbjct: 61  ATDADRVGRELAEKLFNELSEMVGHIERMKLPLGHDLEHIDVELVRKELKNALVRAGLKT 120

Query: 121 LQRVPEYMELRRDYLDLKGKFEELQKEKEELLKRLEELEAKYNEVQDELKRLEVENSRLN 180
           LQR+PEYMELR+DYLDLKGKFEE++KE+ ELLK+LEE E+KY E+Q+E+KRLE ENSRL 
Sbjct: 121 LQRLPEYMELRKDYLDLKGKFEEVEKERNELLKKLEEAESKYLELQNEIKRLEAENSRLT 180

Query: 181 EMLKKRPKVYDLKKKWDELFPGVELPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKLVE 240
           + LKKRPKVY+LKKKW+ELFPGV+LPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKL+E
Sbjct: 181 DTLKKRPKVYNLKKKWEELFPGVKLPEEELFSKAVKTLNLAGKVIVGQGYIYAEDEKLIE 240

Query: 241 DLLKTVYLSLKLRE--------EEEVEVIREGIEEIIPEIDSGGEGGESE 282
           +LL+TVYLSLKL E        +EE E + E IEEIIPEIDS GEGG+SE
Sbjct: 241 ELLRTVYLSLKLTESQMKEEEIKEEKEEVIESIEEIIPEIDSEGEGGDSE 290


>pir||A69186 hypothetical protein MTH647 - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2621729|gb|AAB85152.1| (AE000845)
           unknown [Methanobacterium thermoautotrophicum]
           Length = 280
           
 Score =  178 bits (448), Expect = 5e-44
 Identities = 108/275 (39%), Positives = 163/275 (59%), Gaps = 25/275 (9%)

Query: 4   VDVRILVEGASDVEVISKALQGLALGSEYNITISSIIPTTNVEIAKSAAAGADLLIIATD 63
           VDVRI+VEGASDVE +S+ALQ ++LG++Y+ITISSI+PTT++EIA  A  GAD+++IATD
Sbjct: 7   VDVRIIVEGASDVESVSRALQRVSLGAKYHITISSIVPTTSLEIALRAVEGADIVLIATD 66

Query: 64  ADRVGRELAERLFNELSEMVGHIERMKIPIGHDLEHIDVELVRKELKNALVRAGLKTL-- 121
            D+ GRELA++    L   VGHIERMK+P GHD+E++D +L+R+E++NA++RAGL+TL  
Sbjct: 67  VDQTGRELADKFREALRGHVGHIERMKLPYGHDVEYLDPDLIREEIENAIIRAGLQTLTG 126

Query: 122 -------------------QRVPEYMELRRDYLDLKGKFEELQKEKEELLKRLEELEAKY 162
                              + V E   LR +   L+G+ E   +  E L   L +LE K+
Sbjct: 127 IRSLSDMKERLEECREKLDETVAENTALRDENTRLQGEVEAGNERIESLRGELSQLEEKF 186

Query: 163 NEVQDELKRLEVENSRLNEMLKKRPKVYDLKKKWDELFPGVELPEEELFSKAVKTLNLAG 222
             ++ E  +LE   S L +  K+  + + +   W E F G E  + E        +   G
Sbjct: 187 RLLEGEYSKLETRFSELED--KELLETFSITDLWRETF-GEEPDDLERIYFVTDHIKPEG 243

Query: 223 KVIVGQGYIYAEDEKLVEDLLKTVYLSLKLREEEE 257
            +I+GQG I A   +   + L+ +  +L   E++E
Sbjct: 244 -IILGQGSIAAPSREDAVEWLRIIKSALVFTEKDE 277


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.313    0.136    0.357 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99419815
Number of Sequences: 2977
Number of extensions: 4424237
Number of successful extensions: 42126
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42108
Number of HSP's gapped (non-prelim): 3
length of query: 283
length of database: 189,106,746
effective HSP length: 62
effective length of query: 221
effective length of database: 152,000,552
effective search space: 33592121992
effective search space used: 33592121992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 164 (68.3 bits)