BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0255 (xerD-like) DE:INTEGRASE/RECOMBINASE xerD
(286 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75153 integrase/recombinase xerd PAB0255 - Pyrococcus abys... 564 e-160
pir||B71194 probable integrase/recombinase - Pyrococcus horikosh... 473 e-132
pir||D69219 integrase-recombinase protein - Methanobacterium the... 204 9e-52
emb|CAC12435.1| (AL445067) site-specific integrase/recombinase X... 169 2e-41
gb|AAB87499.1| (AF033497) site-specific recombinase [Proteus mir... 164 1e-39
gb|AAF89876.1| (AF173869) putative site-specific recombinase Xer... 159 5e-38
pir||F83177 integrase/recombinase XerD PA3738 [imported] - Pseud... 158 8e-38
gb|AAC64162.1| (AF093548) tyrosine recombinase XerD [Staphylococ... 157 1e-37
gb|AAF21314.1| (AF118839) site-specific recombinase [Staphylococ... 157 1e-37
sp|P21891|XERD_ECOLI INTEGRASE/RECOMBINASE XERD >gi|96549|pir||A... 157 1e-37
pdb|1A0P| Site-Specific Recombinase, Xerd 157 1e-37
sp|P55889|XERD_SALTY INTEGRASE/RECOMBINASE XERD >gi|1916335|gb|A... 155 4e-37
sp|P46352|RIPX_BACSU PROBABLE INTEGRASE/RECOMBINASE RIPX >gi|742... 154 1e-36
pir||A82080 integrase/recombinase XerD VC2419 [imported] - Vibri... 153 2e-36
sp|P44630|XERD_HAEIN INTEGRASE/RECOMBINASE XERD >gi|1074933|pir|... 150 1e-35
dbj|BAB05248.1| (AP001512) integrase/recombinase [Bacillus halod... 149 3e-35
pir||C37841 probable site-specific recombinase xerC - Escherichi... 145 4e-34
sp|P55888|XERC_SALTY INTEGRASE/RECOMBINASE XERC >gi|1916339|gb|A... 145 6e-34
pir||H82681 integrase/recombinase XF1425 [imported] - Xylella fa... 144 1e-33
sp|P22885|XERC_ECOLI INTEGRASE/RECOMBINASE XERC 144 1e-33
gb|AAB87500.1| (AF033498) site-specific recombinase [Proteus mir... 144 1e-33
pir||F81163 integrase/recombinase XerD NMB0751 [imported] - Neis... 144 1e-33
pir||C81943 probable integrase/recombinase NMA0964 [imported] - ... 142 5e-33
sp|P39776|CODV_BACSU PROBABLE INTEGRASE/RECOMBINASE CODV >gi|212... 141 1e-32
pir||S30701 xerC protein - Escherichia coli >gi|148210|gb|AAA676... 141 1e-32
sp|P44818|XERC_HAEIN INTEGRASE/RECOMBINASE XERC >gi|1074932|pir|... 140 1e-32
pir||S61493 codV protein - Bacillus subtilis 139 3e-32
pir||A82987 site-specific recombinase Sss PA5280 [imported] - Ps... 137 1e-31
pir||S43156 sss protein - Pseudomonas aeruginosa >gi|468715|emb|... 137 2e-31
pir||S61402 site-specific recombinase sss - Pseudomonas aeruginosa 137 2e-31
gb|AAC46276.1| (AF028736) site specific recombinase [Serratia ma... 135 5e-31
pir||A82361 integrase/recombinase XerC VC0128 [imported] - Vibri... 134 9e-31
gb|AAF89877.1| (AF173870) putative site-specific recombinase Xer... 133 2e-30
sp|P10020|TNRI_BACTU TNP I RESOLVASE >gi|72982|pir||RSBSTI site-... 133 3e-30
pir||D70503 probable integrase/recombinase - Mycobacterium tuber... 132 4e-30
pir||S72959 probable integrase - Mycobacterium leprae >gi|467161... 131 7e-30
gb|AAA50502.1| (U14952) integrase [Bergeyella zoohelcum] >gi|109... 131 7e-30
emb|CAB08282.1| (Z95117) XerD [Mycobacterium leprae] 131 7e-30
pir||A81978 probable integrase/recombinase NMA0588 [imported] - ... 131 7e-30
pir||T10461 site-specific recombinase sss - Pseudomonas fluoresc... 131 1e-29
dbj|BAB06184.1| (AP001515) integrase/recombinase [Bacillus halod... 131 1e-29
pir||G71461 probable integrase/recombinase - Chlamydia trachomat... 130 2e-29
gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Su... 129 3e-29
pir||F72129 integrase/recombinase - Chlamydophila pneumoniae (st... 129 3e-29
gb|AAF73578.1| (AE002331) integrase/recombinase, phage integrase... 129 3e-29
pir||D71525 probable integrase/recombinase - Chlamydia trachomat... 129 4e-29
pir||C82476 site-specific recombinase IntI4 VCA0291 [imported] -... 128 8e-29
sp|Q10815|YS94_MYCTU PROBABLE INTEGRASE/RECOMBINASE RV2894C >gi|... 127 2e-28
pir||A81724 integrase/recombinase XerD TC0255 [imported] - Chlam... 126 3e-28
emb|CAB10656.1| (Z97369) XerC protein [Mycobacterium leprae] 125 4e-28
pir||B71643 probable integrase/recombinase ripx (xerC) RP817 - R... 125 7e-28
emb|CAA59018.1| (X84261) xerC recombinase [Lactobacillus leichma... 124 1e-27
pir||A71332 probable integrase/recombinase (codV) - syphilis spi... 123 2e-27
pir||B81032 integrase/recombinase XerC NMB1868 [imported] - Neis... 123 2e-27
pir||B72005 integrase/recombinase XerD CP0828 [imported] - Chlam... 122 5e-27
gb|AAD55407.2|AF180939_1 (AF180939) site-specific recombinase In... 122 5e-27
pir||D72312 integrase-recombinase protein - Thermotoga maritima ... 122 6e-27
pir||B71693 integrase/recombinase xerd (xerD) RP361 - Rickettsia... 121 1e-26
pir||F82677 site-specific recombinase XF1483 [imported] - Xylell... 120 2e-26
gb|AAA74432.1| (U32685) RipX [Bacillus subtilis] 118 7e-26
gb|AAF44051.1|AF206717_5 (AF206717) ResU [Shuttle vector pI3] 116 2e-25
gi|9507567 integrase for In2 [Plasmid R100] >gi|124696|sp|P09999... 116 4e-25
gb|AAA91585.1| (J02967) recombinase [Plasmid RGN238] >gi|8118290... 116 4e-25
gb|AAA88676.1| (M33633) unknown protein [Transposon Tn21] 116 4e-25
pir||S04809 integrase-like protein E2 - Escherichia coli plasmid... 115 5e-25
gi|10955228 Int [Enterobacter aerogenes] >gi|321892|pir||S32184 ... 115 5e-25
emb|CAA67039.1| (X98393) integrase [Pseudomonas aeruginosa] 115 5e-25
emb|CAA75043.1| (Y14748) int [Corynebacterium glutamicum] >gi|36... 115 5e-25
dbj|BAA23767.1| (D78374) integrase [Pseudomonas aeruginosa] 115 5e-25
emb|CAA11470.1| (AJ223604) intI1 [Pseudomonas aeruginosa] 115 5e-25
gb|AAA72104.1| (M86913) integrase [Transposon Tn2426] 115 5e-25
pir||JQ0300 hypothetical 38.4K protein - Pseudomonas aeruginosa ... 115 6e-25
gi|10955456 The peptide is not translated beyond amino acid 178 ... 114 1e-24
sp|P55632|Y4QK_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4QK >gi|218... 111 7e-24
pir||E71332 probable integrase/recombinase (xprB) - syphilis spi... 111 7e-24
pir||I40587 site-specific recombinase (Tn5401) - Bacillus thurin... 108 6e-23
sp|P55429|Y4EF_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4EF >gi|218... 106 2e-22
pir||G72672 probable integrase/recombinase xerD APE0805 - Aeropy... 104 9e-22
sp|P06696|TNPA_STAAU TRANSPOSASE A (TRANSPOSON TN554) >gi|79913|... 103 2e-21
prf||1202257C gene tnpA [Staphylococcus aureus] 103 2e-21
gi|10956075 DNA invertase homolog [Chlorobium limicola] >gi|1688... 102 5e-21
gb|AAB54012.1| (U95315) transposase homolog [Mycobacterium gordo... 102 6e-21
sp|P55639|Y4RF_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4RF >gi|218... 101 1e-20
emb|CAB61438.1| (Z32686) MrpI [Proteus mirabilis] 98 1e-19
pir||C82878 integrase-recombinase protein UU529 [imported] - Ure... 95 1e-18
sp|P55636|Y4RC_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4RC >gi|218... 94 1e-18
gi|10956379 pXO1-132 [Bacillus anthracis] >gi|7474242|pir||D5910... 94 2e-18
pir||G81359 DNA recombinase Cj0863c [imported] - Campylobacter j... 93 4e-18
pir||S10927 integrase-like protein 2M - Mycobacterium fortuitum ... 90 3e-17
gi|10957535 integrase/recombinase XerD, putative [Deinococcus ra... 86 4e-16
sp|P04741|FIME_ECOLI TYPE 1 FIMBRIAE REGULATORY PROTEIN FIME >gi... 85 1e-15
gi|10956538 integrase/recombinase [Lactobacillus delbrueckii] >g... 85 1e-15
gi|10954856 Hypothetical gene [Agrobacterium tumefaciens] >gi|64... 85 1e-15
pir||S31463 probable integrase/recombinase [similarity] - Bacter... 83 3e-15
sp|Q57813|Y367_METJA PROBABLE INTEGRASE/RECOMBINASE PROTEIN MJ03... 83 4e-15
pir||S53064 FimE protein - Escherichia coli >gi|732682|emb|CAA85... 82 8e-15
dbj|BAA78093.1| (AB027715) aminoglycoside adenyltransferase [Cor... 81 1e-14
pir||S53063 FimB protein - Escherichia coli >gi|732681|emb|CAA85... 81 1e-14
emb|CAA71839.1| (Y10902) FimB recombinase [Escherichia coli] 81 1e-14
sp|P04742|FIMB_ECOLI TYPE 1 FIMBRIAE REGULATORY PROTEIN FIMB >gi... 81 2e-14
emb|CAA27560.1| (X03923) fimB [Escherichia coli] 80 2e-14
sp|P55459|Y4GC_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4GC >gi|218... 80 2e-14
gb|AAF71178.1|AF179594_1 (AF179594) site-specific recombinase In... 80 4e-14
sp|P55635|Y4RB_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4RB >gi|218... 79 5e-14
gb|AAC17173.1| (AF065141) unknown [Streptococcus mutans] 79 7e-14
pir||S40097 hypothetical protein - Clostridium butyricum >gi|436... 79 7e-14
gb|AAC34799.1| (AF063010) integrase [Enterococcus faecium] >gi|8... 77 2e-13
pir||C64604 integrase/recombinase - Helicobacter pylori (strain ... 77 3e-13
pir||B71910 integrase-recombinase protein (xercd family) - Helic... 77 3e-13
sp|P27451|TNR5_STRPN TRANSPOSASE (INTEGRASE) (TRANSPOSON TN1545)... 76 4e-13
sp|P22886|TNR6_ENTFA TRANSPOSASE (INTEGRASE) (TRANSPOSON TN916) ... 76 4e-13
gb|AAB60031.1| (U09422) ORF3 [Enterococcus faecalis] >gi|1097930... 76 4e-13
gb|AAB60032.1| (U09422) ORF4 [Enterococcus faecalis] >gi|1097931... 76 4e-13
pir||B82927 integrase-recombinase protein UU145 [imported] - Ure... 76 4e-13
gb|AAC36982.1| (L15633) [Conjugative transposon Tn916 (from Ente... 76 6e-13
gb|AAC36983.1| (L15633) [Conjugative transposon Tn916 (from Ente... 76 6e-13
gb|AAC36984.1| (L15633) [Conjugative transposon Tn916 (from Ente... 76 6e-13
pir||T46957 probable site-specific recombinase [imported] - Lact... 76 6e-13
sp|P55634|Y4RA_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4RA >gi|218... 75 7e-13
pir||I39527 lambda integrase family of site specific recombinase... 75 1e-12
emb|CAB86871.1| (AJ277027) integrase [Klebsiella pneumoniae] 75 1e-12
gi|9626516 Homology to site specific recombinases [Acholeplasma ... 74 2e-12
gb|AAC53623.1| (U35133) recombinase [Cloning vector pBSL175] 74 2e-12
pir||S60664 integrase - Escherichia coli (fragment) 74 2e-12
sp|P55638|Y4RE_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4RE >gi|218... 74 2e-12
gi|10956351 pXO1-103 [Bacillus anthracis] >gi|7474211|pir||G5910... 74 2e-12
sp|P18021|REDM_ECOLI RESOLVASE (PROTEIN D) >gi|78547|pir||JT0371... 73 3e-12
gi|10955421 Resolvase [Escherichia coli] >gi|6009447|dbj|BAA8490... 73 3e-12
pir||A82919 integrase-recombinase protein UU222 [imported] - Ure... 73 4e-12
gb|AAG02084.1|AF285416_2 (AF285416) XerC [Pseudomonas aeruginosa] 73 4e-12
gi|9507462 resolvase [Plasmid ColIb-P9] >gi|4512459|dbj|BAA75108... 72 6e-12
pir||B70965 probable integrase - Mycobacterium tuberculosis (str... 71 1e-11
emb|CAA05031.1| (AJ001816) tyrosine recombinase IntI2 [Escherich... 71 2e-11
gi|9507757 resolvase [Plasmid F] >gi|8918867|dbj|BAA97914.1| (AP... 70 3e-11
sp|P06615|REDF_ECOLI RESOLVASE (PROTEIN D) >gi|78383|pir||A24716... 70 3e-11
gb|AAA24900.1| (M12987) Protein D [Plasmid F] 70 3e-11
pir||S74530 integrase-recombinase protein xerC - Synechocystis s... 70 3e-11
pir||A71870 integrase/recombinase (xercd family) - Helicobacter ... 69 4e-11
gb|AAF72940.1|AF231133_1 (AF231133) INTI1 [Pseudomonas aeruginosa] 69 6e-11
gi|10957411 integrase/recombinase XerD, putative [Deinococcus ra... 68 1e-10
>pir||A75153 integrase/recombinase xerd PAB0255 - Pyrococcus abyssi (strain
Orsay) >gi|5457814|emb|CAB49304.1| (AJ248284)
INTEGRASE/RECOMBINASE xerD [Pyrococcus abyssi]
Length = 286
Score = 564 bits (1438), Expect = e-160
Identities = 286/286 (100%), Positives = 286/286 (100%)
Query: 1 MEEREERVRDDTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLK 60
MEEREERVRDDTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLK
Sbjct: 1 MEEREERVRDDTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLK 60
Query: 61 RKGYSTRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETL 120
RKGYSTRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETL
Sbjct: 61 RKGYSTRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETL 120
Query: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY 180
RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY
Sbjct: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY 180
Query: 181 LESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERG 240
LESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERG
Sbjct: 181 LESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERG 240
Query: 241 IDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLVESIIGGS 286
IDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLVESIIGGS
Sbjct: 241 IDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLVESIIGGS 286
>pir||B71194 probable integrase/recombinase - Pyrococcus horikoshii
>gi|3258262|dbj|BAA30945.1| (AP000007) 285aa long
hypothetical integrase/recombinase [Pyrococcus
horikoshii]
Length = 285
Score = 473 bits (1203), Expect = e-132
Identities = 223/285 (78%), Positives = 266/285 (93%)
Query: 1 MEEREERVRDDTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLK 60
M+EREE V D +EEFATYLELEGKS+NT+RMYTYY+SKFFEEG+SPTARDAL+FLAKL+
Sbjct: 1 MKEREEIVNSDILEEFATYLELEGKSKNTIRMYTYYLSKFFEEGYSPTARDALKFLAKLR 60
Query: 61 RKGYSTRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETL 120
+ GYS RSLNLVIQALK+YFKFEGLDSEAEKLK PK+PK+LPKSLTE+EV++I++ A+ L
Sbjct: 61 KSGYSIRSLNLVIQALKSYFKFEGLDSEAEKLKNPKIPKSLPKSLTEDEVKKIVSVADNL 120
Query: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY 180
RD+LILLLLYGAGLRVSELCNL++EDVNFE ++VRGGKGGKDRV+PIS++LL EI+RY
Sbjct: 121 RDKLILLLLYGAGLRVSELCNLKIEDVNFEKSFLIVRGGKGGKDRVIPISKTLLFEIERY 180
Query: 181 LESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERG 240
L++R D+SPYLFVE +R RKDKLSPKTVW LVKKYG+K G+ +TPHQLRHSFATHMLERG
Sbjct: 181 LKTRKDNSPYLFVEKRRNRKDKLSPKTVWMLVKKYGKKVGLNVTPHQLRHSFATHMLERG 240
Query: 241 IDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLVESIIGG 285
+DIRIIQELLGH+NLSTTQIYTKV+TKHL+EA++KAKL+E+I+GG
Sbjct: 241 VDIRIIQELLGHANLSTTQIYTKVTTKHLREAIEKAKLIETILGG 285
>pir||D69219 integrase-recombinase protein - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621988|gb|AAB85391.1| (AE000865)
integrase-recombinase protein [Methanobacterium
thermoautotrophicum]
Length = 311
Score = 204 bits (514), Expect = 9e-52
Identities = 123/292 (42%), Positives = 175/292 (59%), Gaps = 28/292 (9%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE--------EGHSPTARDALRFLAKLKRK 62
+ IE++ LE+ S NT++ Y + F+E R R++ LKR
Sbjct: 25 ELIEDYLIELEIRNYSPNTIKTYKSIVKNFYEFLMNEDDLYDDRRVLRSFKRYIQYLKRD 84
Query: 63 GYSTRS-LNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETL- 120
T++ + LV +K +F+F G+D E++K PK K+LPKSL E+EV+ +INA E
Sbjct: 85 KKVTQNYIYLVTVVVKKFFEFSGIDC-LEEVKAPKRTKSLPKSLNEDEVKSLINAVEVAD 143
Query: 121 -----------RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPI 169
RDRLIL LLY +GLRVSEL +LR+ D++ + I +RG KG KDR+V
Sbjct: 144 DGSVIRRFIKTRDRLILSLLYSSGLRVSELVSLRINDIDPDERTIRIRG-KGDKDRIVLF 202
Query: 170 SESLLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE--LTPHQ 227
E+ + YL+ R +S YLF+ + D L+P+ V ++K Y RKAG++ +TPH
Sbjct: 203 DENTRDLLMDYLKRRIHESEYLFLN---RFGDPLTPRYVQMMIKNYARKAGIKKKVTPHI 259
Query: 228 LRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLV 279
LRHSFATH+L+ G+DIR IQ+LLGHSNLSTTQIYT V + LK +A+L+
Sbjct: 260 LRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRARLL 311
>emb|CAC12435.1| (AL445067) site-specific integrase/recombinase XerD related protein
[Thermoplasma acidophilum]
Length = 283
Score = 169 bits (425), Expect = 2e-41
Identities = 107/276 (38%), Positives = 164/276 (58%), Gaps = 21/276 (7%)
Query: 10 DDTIEEFATYLELEGKSRNTVRMYTYYISKFF----EEGHSPTARDALR---FLAKLKRK 62
++ + F Y+ E KSR T++ Y + + +F ++ T D R FLA KR
Sbjct: 6 NEYLSRFVEYMTGERKSRYTIKEYRFLVDQFLSFMNKKPDEITPMDIERYKNFLAVKKR- 64
Query: 63 GYSTRSLNLVIQALKAYFKFEGLDSEAE-KLKTPKMPKTLPKSLTEEEVRRIINAAET-L 120
YS S L I+A+K ++K LD L PK P +P L+E+E +R+I AA +
Sbjct: 65 -YSKTSQYLAIKAVKLFYK--ALDLRVPINLTPPKRPSHMPVYLSEDEAKRLIEAASSDT 121
Query: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY 180
R I+ +L G+RV ELCNL++ DV+ + +I VR GKG KDR+V ++E + + Y
Sbjct: 122 RMYAIVSVLAYTGVRVGELCNLKISDVDLQESIINVRSGKGDKDRIVIMAEECVKALGSY 181
Query: 181 LESR---NDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE--LTPHQLRHSFATH 235
L+ R + D+ YLFV +R R D T+ R+++ G+KAG++ +TPH LRH+FAT
Sbjct: 182 LDLRLSMDTDNDYLFVSNRRVRFDT---STIERMIRDLGKKAGIQKKVTPHVLRHTFATS 238
Query: 236 MLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
+L G DIR IQ++LGH++++TTQIYT ++ L+E
Sbjct: 239 VLRNGGDIRFIQQILGHASVATTQIYTHLNDSALRE 274
>gb|AAB87499.1| (AF033497) site-specific recombinase [Proteus mirabilis]
Length = 313
Score = 164 bits (411), Expect = 1e-39
Identities = 108/297 (36%), Positives = 162/297 (54%), Gaps = 35/297 (11%)
Query: 3 EREERVRDDTIEEFATYLELE-GKSRNTVRMYTYYISKFFE-------EGHSPTARDALR 54
+ + D IE+F + LE G S NT+ Y + + S T D
Sbjct: 13 DNNQEDNDVIIEQFLDSIWLEQGLSANTLSAYRLDLQALSQWLVTQKLNWLSVTTLDLHA 72
Query: 55 FLAKLKRKGYSTRSLNLVIQALKAYFKF---EGL--DSEAEKLKTPKMPKTLPKSLTEEE 109
FLA +GY S ++ L+ +F++ E L D + L TPK+PK LPK L+E++
Sbjct: 73 FLATRLDEGYKATSAARLLSTLRRFFQYLYREKLRQDDPSALLSTPKLPKRLPKDLSEQQ 132
Query: 110 VRRIINAA-----ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKD 164
V +++A LRD+ +L +LY GLRVSEL L + D++ GV+ V G KG K+
Sbjct: 133 VENLLSAPCIDEPIELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIG-KGDKE 191
Query: 165 RVVPISESLLSEIKRYLE--------SRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYG 216
R+VP+ E + +++YL+ + DD + R K++ +T W +K Y
Sbjct: 192 RLVPLGEEAIYWLEQYLQYGRPALMQGKTDD-----IVFPSLRGQKMTRQTFWHRIKHYA 246
Query: 217 RKAGVE---LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLK 270
AG++ L+PH LRH+FATH+L G D+R++Q LLGHS+LSTTQIYT V+T+ LK
Sbjct: 247 VIAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLK 303
>gb|AAF89876.1| (AF173869) putative site-specific recombinase XerD [Staphylococcus
aureus]
Length = 295
Score = 159 bits (397), Expect = 5e-38
Identities = 102/286 (35%), Positives = 162/286 (55%), Gaps = 31/286 (10%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKF--FEEGHSPTARDAL------RFLAKLKRKG 63
IEE+ ++++E G S NT+ Y + K+ + H + D + L L +G
Sbjct: 5 IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQG 64
Query: 64 YSTRSLNLVIQALKAYFKFEGLDSEAEK-----LKTPKMPKTLPKSLTEEEVRRII---- 114
S +S+ I ++++ +F + A K L +PK K LP L +EV ++
Sbjct: 65 QSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETPD 124
Query: 115 -NAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESL 173
N RDR +L LLY G+RVSEL +L +E+VN G + V G KG K+R+VP+ +++
Sbjct: 125 LNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFG-KGDKERIVPLGDAV 183
Query: 174 LSEIKRYLES------RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE--LTP 225
+ + Y+E+ + + LF+ M K LS + +W+++K+ G KA ++ LTP
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGK---PLSRQAIWKMIKQNGVKANIKKKLTP 240
Query: 226 HQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
H LRHSFATH+LE G D+R +QE+LGHS++STTQ+YT VS +K+
Sbjct: 241 HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIKK 286
>pir||F83177 integrase/recombinase XerD PA3738 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949906|gb|AAG07125.1|AE004793_2 (AE004793)
integrase/recombinase XerD [Pseudomonas aeruginosa]
Length = 298
Score = 158 bits (395), Expect = 8e-38
Identities = 109/285 (38%), Positives = 163/285 (56%), Gaps = 30/285 (10%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKF--FEEGHS----PTARDA-LRFLAKLKRKGY 64
I+ F L LE G + NT Y + +F + +G RDA L LA +GY
Sbjct: 9 IDRFLDALWLEKGLADNTREAYRNDLQQFNAWLDGRGLRLEGIGRDAILDHLAWRLEQGY 68
Query: 65 STRSLNLVIQALKAYFKF---EGLDSEAEKLKT--PKMPKTLPKSLTEEEVRRIINAAET 119
RS + L+ ++++ +GL +E L+ P++ K LPKSL+E +V ++ A E
Sbjct: 69 KARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEALLAAPEV 128
Query: 120 -----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLL 174
LRDR +L +LY GLRVSEL L +E VN GV+ V G KG K+R+VP+ E +
Sbjct: 129 DDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFG-KGSKERLVPLGEEAI 187
Query: 175 SEIKRYL-ESRND-----DSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKA--GVELTPH 226
++RYL E+R D S LF + R ++++ +T W +K + + A G ++PH
Sbjct: 188 GWLERYLREARGDLLGGRPSDVLFPSL---RGEQMTRQTFWHRIKHHAQVAAIGTSISPH 244
Query: 227 QLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
LRH+FATH+L G D+R++Q LLGHS+LSTTQIYT ++ L++
Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIARARLQD 289
>gb|AAC64162.1| (AF093548) tyrosine recombinase XerD [Staphylococcus aureus]
Length = 295
Score = 157 bits (394), Expect = 1e-37
Identities = 101/286 (35%), Positives = 162/286 (56%), Gaps = 31/286 (10%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKF--FEEGHSPTARDAL------RFLAKLKRKG 63
IEE+ ++++E G S NT+ Y + K+ + H + D + L L +G
Sbjct: 5 IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQG 64
Query: 64 YSTRSLNLVIQALKAYFKFEGLDSEAEK-----LKTPKMPKTLPKSLTEEEVRRII---- 114
S +S+ I ++++ +F + A K L +PK K LP L +EV ++
Sbjct: 65 QSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETPD 124
Query: 115 -NAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESL 173
N RDR +L LLY G+RVSEL +L +E+VN G + V G KG K+R+VP+ +++
Sbjct: 125 LNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFG-KGDKERIVPLGDAV 183
Query: 174 LSEIKRYLES------RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE--LTP 225
+ + Y+E+ + + LF+ M K LS + +W+++K+ G KA ++ LTP
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGK---PLSRQAIWKMIKQNGVKANIKKTLTP 240
Query: 226 HQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
H LRHSFATH+LE G D+R +QE+LGHS++STTQ+YT VS +++
Sbjct: 241 HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRK 286
>gb|AAF21314.1| (AF118839) site-specific recombinase [Staphylococcus aureus]
Length = 293
Score = 157 bits (394), Expect = 1e-37
Identities = 101/286 (35%), Positives = 162/286 (56%), Gaps = 31/286 (10%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKF--FEEGHSPTARDAL------RFLAKLKRKG 63
IEE+ ++++E G S NT+ Y + K+ + H + D + L L +G
Sbjct: 5 IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQG 64
Query: 64 YSTRSLNLVIQALKAYFKFEGLDSEAEK-----LKTPKMPKTLPKSLTEEEVRRII---- 114
S +S+ I ++++ +F + A K L +PK K LP L +EV ++
Sbjct: 65 QSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETPD 124
Query: 115 -NAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESL 173
N RDR +L LLY G+RVSEL +L +E+VN G + V G KG K+R+VP+ +++
Sbjct: 125 LNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFG-KGDKERIVPLGDAV 183
Query: 174 LSEIKRYLES------RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE--LTP 225
+ + Y+E+ + + LF+ M K LS + +W+++K+ G KA ++ LTP
Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGK---PLSRQAIWKMIKQNGVKANIKKTLTP 240
Query: 226 HQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
H LRHSFATH+LE G D+R +QE+LGHS++STTQ+YT VS +++
Sbjct: 241 HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRK 286
>sp|P21891|XERD_ECOLI INTEGRASE/RECOMBINASE XERD >gi|96549|pir||A39202 site-specific
integrase/recombinase, with XerC - Escherichia coli
>gi|147548|gb|AAA62787.1| (M54884) xprB [Escherichia
coli] >gi|887844|gb|AAA83075.1| (U28375) site-specific
integrase/recombinase, with xerC [Escherichia coli]
>gi|1789261|gb|AAC75932.1| (AE000373) site-specific
recombinase [Escherichia coli K12]
Length = 298
Score = 157 bits (393), Expect = 1e-37
Identities = 106/287 (36%), Positives = 157/287 (53%), Gaps = 33/287 (11%)
Query: 13 IEEFATYLELEGK-SRNTVRMYTYYISKFFEEGH-------SPTARDALRFLAKLKRKGY 64
IE+F L LE + NT+ Y +S E H + + D LA+ GY
Sbjct: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67
Query: 65 STRSLNLVIQALKAYF------KFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAE 118
S ++ A++ F KF D A L +PK+P+ LPK L+E +V R++ A
Sbjct: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAH-LASPKLPQRLPKDLSEAQVERLLQAPL 126
Query: 119 T-----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESL 173
LRD+ +L +LY GLRVSEL L + D++ GV+ V G KG K+R+VP+ E
Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG-KGNKERLVPLGEEA 185
Query: 174 LSEIKRYLESRNDDSPYLF------VEMKRKRKDKLSPKTVWRLVKKYGRKAGVE---LT 224
+ ++ YLE P+L V +R +++ +T W +K Y AG++ L+
Sbjct: 186 VYWLETYLEHGR---PWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242
Query: 225 PHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
PH LRH+FATH+L G D+R++Q LLGHS+LSTTQIYT V+T+ L++
Sbjct: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289
>pdb|1A0P| Site-Specific Recombinase, Xerd
Length = 290
Score = 157 bits (393), Expect = 1e-37
Identities = 106/287 (36%), Positives = 157/287 (53%), Gaps = 33/287 (11%)
Query: 13 IEEFATYLELEGK-SRNTVRMYTYYISKFFEEGH-------SPTARDALRFLAKLKRKGY 64
IE+F L LE + NT+ Y +S E H + + D LA+ GY
Sbjct: 6 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 65
Query: 65 STRSLNLVIQALKAYF------KFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAE 118
S ++ A++ F KF D A L +PK+P+ LPK L+E +V R++ A
Sbjct: 66 KATSSARLLSAVRRLFQYLYREKFREDDPSAH-LASPKLPQRLPKDLSEAQVERLLQAPL 124
Query: 119 T-----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESL 173
LRD+ +L +LY GLRVSEL L + D++ GV+ V G KG K+R+VP+ E
Sbjct: 125 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG-KGNKERLVPLGEEA 183
Query: 174 LSEIKRYLESRNDDSPYLF------VEMKRKRKDKLSPKTVWRLVKKYGRKAGVE---LT 224
+ ++ YLE P+L V +R +++ +T W +K Y AG++ L+
Sbjct: 184 VYWLETYLEHGR---PWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 240
Query: 225 PHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
PH LRH+FATH+L G D+R++Q LLGHS+LSTTQIYT V+T+ L++
Sbjct: 241 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 287
>sp|P55889|XERD_SALTY INTEGRASE/RECOMBINASE XERD >gi|1916335|gb|AAC45774.1| (U92524)
site-specific recombinase [Salmonella typhimurium]
Length = 298
Score = 155 bits (389), Expect = 4e-37
Identities = 104/287 (36%), Positives = 158/287 (54%), Gaps = 33/287 (11%)
Query: 13 IEEFATYLELEGK-SRNTVRMYTYYISKFFEEGH-------SPTARDALRFLAKLKRKGY 64
IE+F L LE + NT+ Y +S H + A D LA+ GY
Sbjct: 8 IEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGY 67
Query: 65 STRSLNLVIQALKAYF------KFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAE 118
+ ++ A++ +F K+ D A+ L +PK+P+ LPK L+E +V R++ A
Sbjct: 68 KATTSARLLSAMRRFFQHLYREKYREDDPSAQ-LASPKLPQRLPKDLSEAQVERLLQAPL 126
Query: 119 T-----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESL 173
LRD+ +L +LY GLRVSEL L + D++ GV+ V G KG K+R+VP+ E
Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG-KGNKERLVPLGEEA 185
Query: 174 LSEIKRYLESRNDDSPYLF------VEMKRKRKDKLSPKTVWRLVKKYGRKAGVE---LT 224
+ ++ YLE P+L V +R +++ +T W +K Y AG++ L+
Sbjct: 186 VYWLETYLEHGR---PWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242
Query: 225 PHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
PH LRH+FATH+L G D+R++Q LLGHS+LSTTQIYT V+T+ L++
Sbjct: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289
>sp|P46352|RIPX_BACSU PROBABLE INTEGRASE/RECOMBINASE RIPX >gi|7428935|pir||A69693
integrase/recombinase ripX - Bacillus subtilis
>gi|1303994|dbj|BAA12649.1| (D84432) YqkM [Bacillus
subtilis] >gi|2634786|emb|CAB14283.1| (Z99116)
integrase/recombinase [Bacillus subtilis]
Length = 296
Score = 154 bits (385), Expect = 1e-36
Identities = 101/293 (34%), Positives = 166/293 (56%), Gaps = 32/293 (10%)
Query: 11 DTIEEFATYLELE-GKSRNTV-------RMYTYYISKFFE--EGHSPTARDALRFLAKLK 60
D I++F Y+ +E G S+NT+ + Y+ Y+++ + + T +++L LK
Sbjct: 3 DQIKDFIHYVMVERGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLK 62
Query: 61 RKGYSTRSLNLVIQALKAYFKFEGLDSEAEK-----LKTPKMPKTLPKSLTEEEVRRIIN 115
G S ++ + +++++ +F + +K ++T K + LPK L EV R+++
Sbjct: 63 DSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLD 122
Query: 116 AAETL-----RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPIS 170
+ RD+ +L LLY G+RVSE+ L+ DV+ G I G KG K+R+VPI
Sbjct: 123 TPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFG-KGRKERIVPIG 181
Query: 171 ESLLSEIKRYLES------RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV--E 222
E+ S I+ Y+ +N+ S LF+ K+ +S + W+ +KK +AG+ E
Sbjct: 182 EAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQ---ISRQGFWKNLKKIALEAGIKKE 238
Query: 223 LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKK 275
LTPH LRHSFATH+LE G D+R +QE+LGH+++STTQIYT V+ LK+ K+
Sbjct: 239 LTPHTLRHSFATHLLEDGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQ 291
>pir||A82080 integrase/recombinase XerD VC2419 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656993|gb|AAF95562.1|
(AE004311) integrase/recombinase XerD [Vibrio cholerae]
Length = 302
Score = 153 bits (383), Expect = 2e-36
Identities = 98/283 (34%), Positives = 156/283 (54%), Gaps = 25/283 (8%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKFFE-EGHSPTARDALRFLAK------LKRKGY 64
+E+F + E G + NTV Y +SK E + D + F L + Y
Sbjct: 12 VEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQNY 71
Query: 65 STRSLNLVIQALKAYFKF-----EGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAET 119
S ++ A++ F++ D + L +PK+P LPK L+E +V +++A +
Sbjct: 72 KPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSAPDP 131
Query: 120 -----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLL 174
LRD+ +L LLY GLRV+EL +L +E+++ GV+ V G KGGK+R+VP+ E+ +
Sbjct: 132 QSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMG-KGGKERLVPMGENAI 190
Query: 175 SEIKRYLESRND---DSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE---LTPHQL 228
I+ +L+ + R +++ +T W +K Y AG++ L+PH L
Sbjct: 191 EWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHVL 250
Query: 229 RHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
RH+FATH+L G D+R++Q LLGHS+LSTTQIYT V+T+ LK+
Sbjct: 251 RHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQ 293
>sp|P44630|XERD_HAEIN INTEGRASE/RECOMBINASE XERD >gi|1074933|pir||A64061 probable
integrase/recombinase - Haemophilus influenzae (strain
Rd KW20) >gi|1573278|gb|AAC21974.1| (U32716)
integrase/recombinase (xerD) [Haemophilus influenzae Rd]
Length = 297
Score = 150 bits (376), Expect = 1e-35
Identities = 95/276 (34%), Positives = 152/276 (54%), Gaps = 34/276 (12%)
Query: 23 EGKSRNTVRMYTY-------YISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNLVIQA 75
+G S NTV+ Y ++ K + A D FL + KGY S ++ A
Sbjct: 18 KGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLEKGYKATSTARMLSA 77
Query: 76 LKAYFKF-----EGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAET-----LRDRLI 125
++ F++ +D + L +PK+P LPK LTE++V ++N LRD+ +
Sbjct: 78 MRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTPNVEVPLELRDKAM 137
Query: 126 LLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY----- 180
L LLY GLRV+EL +L +E+++ + GV+ V G KG K+R+VP+ E ++++
Sbjct: 138 LELLYATGLRVTELVSLTIENMSVQQGVVRVIG-KGNKERIVPMGEEAAYWVRQFMLYGR 196
Query: 181 ---LESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE---LTPHQLRHSFAT 234
L ++ D V +R +++ +T W VK Y A ++ L+PH LRH+FAT
Sbjct: 197 PVLLNGQSSD-----VVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPHVLRHAFAT 251
Query: 235 HMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLK 270
H++ G D+R++Q LLGH++LSTTQIYT V+ + LK
Sbjct: 252 HLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLK 287
>dbj|BAB05248.1| (AP001512) integrase/recombinase [Bacillus halodurans]
Length = 299
Score = 149 bits (373), Expect = 3e-35
Identities = 93/290 (32%), Positives = 164/290 (56%), Gaps = 32/290 (11%)
Query: 10 DDTIEEFATYLELE-GKSRNTV-------RMYTYYISKFFE--EGHSPTARDALRFLAKL 59
++ +++F + ++E G S NT+ + Y Y+ + E + T L +L L
Sbjct: 5 NNNLQQFLHFQKVERGLSNNTIQSYGRDLKQYIQYVERVEEIRSARNITRETILHYLYHL 64
Query: 60 KRKGYSTRSLNLVIQALKAYFKF---EGL-DSEAE-KLKTPKMPKTLPKSLTEEEVRRII 114
+ +G + S+ + A++++ +F E L DS+ ++ PK K LPK+LT EEV ++
Sbjct: 65 REQGRAETSIARAVAAIRSFHQFLLREKLSDSDPTVHVEIPKATKRLPKALTIEEVEALL 124
Query: 115 NAAE-----TLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPI 169
N+ + +LR++ +L LLY G+RVSEL L + D++ G + G KG K+R++PI
Sbjct: 125 NSPQGRDPFSLRNKAMLELLYATGMRVSELIGLTLSDIHLSMGFVRCLG-KGNKERIIPI 183
Query: 170 SESLLSEIKRYLES------RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE- 222
+ ++ YL + + ++FV + LS + W+++K+ + ++
Sbjct: 184 GQVATEAVESYLANGRGKLMKKQSHDHVFVNHHGR---PLSRQGFWKMLKQLAKNVNIDK 240
Query: 223 -LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
LTPH LRHSFATH+LE G D+R +QE+LGH+++STTQIYT V+ +++
Sbjct: 241 PLTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRMRD 290
>pir||C37841 probable site-specific recombinase xerC - Escherichia coli
>gi|148270|gb|AAA24763.1| (M38257) lambda-integrase
[Escherichia coli] >gi|1790244|gb|AAC76814.1| (AE000457)
site-specific recombinase, acts on cer sequence of
ColE1, effects chromosome segregation at cell division
[Escherichia coli K12]
Length = 298
Score = 145 bits (363), Expect = 4e-34
Identities = 89/229 (38%), Positives = 140/229 (60%), Gaps = 18/229 (7%)
Query: 55 FLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSE-----AEKLKTPKMPKTLPKSLTEEE 109
F + +RKG SL L + AL+++F + +E A+ + PK P+ LPK++ ++
Sbjct: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118
Query: 110 VRRI----INAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDR 165
+ R+ IN +RDR +L ++YGAGLR+SEL L ++ ++ E G + V G KG K+R
Sbjct: 119 MNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG-KGSKER 177
Query: 166 VVPISESLLSEIKRYLESRN---DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE 222
+PI + ++ I+ +L+ R+ + LF+ KR +S + V + ++G K G+
Sbjct: 178 RLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKR---ISARNVQKRFAEWGIKQGLN 234
Query: 223 --LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHL 269
+ PH+LRHSFATHMLE D+R +QELLGH+NLSTTQIYT + +HL
Sbjct: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHL 283
>sp|P55888|XERC_SALTY INTEGRASE/RECOMBINASE XERC >gi|1916339|gb|AAC45778.1| (U92525)
site-specific recombinase [Salmonella typhimurium]
>gi|6960253|gb|AAF33443.1| (AF233324) S. typhimurium
site-specific recombinase (XERC) (SP:P55888); contains
similarity to Pfam family PF00589 ('Phage' integrase
family), score=227.1, E=2.5e-64, N=1 [Salmonella
typhimurium LT2]
Length = 300
Score = 145 bits (362), Expect = 6e-34
Identities = 89/229 (38%), Positives = 138/229 (59%), Gaps = 18/229 (7%)
Query: 55 FLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSE-----AEKLKTPKMPKTLPKSLTEEE 109
F + +RKG SL L + AL+++F + E A+ + PK P+ LPK++ ++
Sbjct: 61 FAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDD 120
Query: 110 VRRII----NAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDR 165
V R++ N +RDR +L ++YGAGLR+SEL L ++ ++ + G + V G KG K+R
Sbjct: 121 VNRLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMG-KGSKER 179
Query: 166 VVPISESLLSEIKRYLESRN---DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE 222
+PI + ++ I+ +L+ R D LF+ KR +S + V + ++G K G+
Sbjct: 180 RLPIGRNAVTWIEHWLDLRGLFASDEEALFLSKLGKR---ISARNVQKRFAEWGIKQGLN 236
Query: 223 --LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHL 269
+ PH+LRHSFATHMLE D+R +QELLGH+NLSTTQIYT + +HL
Sbjct: 237 SHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHL 285
>pir||H82681 integrase/recombinase XF1425 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9106440|gb|AAF84234.1|AE003973_2
(AE003973) integrase/recombinase [Xylella fastidiosa]
Length = 324
Score = 144 bits (360), Expect = 1e-33
Identities = 92/245 (37%), Positives = 137/245 (55%), Gaps = 30/245 (12%)
Query: 53 LRFLAKLKRKGYSTRSLNLVIQALKAYFKFE-----GLDSEAEKLKTPKMPKTLPKSLTE 107
L +L ++ YS S ++ L+ +F + D+ + L P +P LPK+LTE
Sbjct: 75 LDYLTWRTQQHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTE 134
Query: 108 EEVRRIINAA-----ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGG 162
++ ++ A E LR+R +L L+Y AGLRVSEL L V +N GV+ + G KGG
Sbjct: 135 SQIEALLAAPSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRIIG-KGG 193
Query: 163 KDRVVPISESLLSEIKRYLESR-------------NDDSPYLFVEMKRKRKDKLSPKTVW 209
K+R+VP+ E ++RYLE +D LF+ KR LS + W
Sbjct: 194 KERLVPLGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTTLKR---LSRQQFW 250
Query: 210 RLVKKYGRKAGV---ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVST 266
R +K Y AG+ +++PH LRHSFATH+L G D+R +Q LLGH ++STTQIYT ++
Sbjct: 251 RWIKHYAALAGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTFIAR 310
Query: 267 KHLKE 271
+HL++
Sbjct: 311 QHLQQ 315
>sp|P22885|XERC_ECOLI INTEGRASE/RECOMBINASE XERC
Length = 298
Score = 144 bits (360), Expect = 1e-33
Identities = 89/229 (38%), Positives = 139/229 (59%), Gaps = 18/229 (7%)
Query: 55 FLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSE-----AEKLKTPKMPKTLPKSLTEEE 109
F + +RKG SL L + AL+++F + +E A+ + PK P+ LPK++ ++
Sbjct: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118
Query: 110 VRRI----INAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDR 165
+ R+ IN +RDR +L ++YGAGLR+SEL L ++ ++ E G + V G KG K+R
Sbjct: 119 MNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG-KGSKER 177
Query: 166 VVPISESLLSEIKRYLESRN---DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE 222
+PI ++ I+ +L+ R+ + LF+ KR +S + V + ++G K G+
Sbjct: 178 RLPIGRKPVAWIEHWLDLRDLFGSEDDALFLSKLGKR---ISARNVQKRFAEWGIKQGLN 234
Query: 223 --LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHL 269
+ PH+LRHSFATHMLE D+R +QELLGH+NLSTTQIYT + +HL
Sbjct: 235 NHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHL 283
>gb|AAB87500.1| (AF033498) site-specific recombinase [Proteus mirabilis]
Length = 307
Score = 144 bits (360), Expect = 1e-33
Identities = 93/285 (32%), Positives = 156/285 (54%), Gaps = 22/285 (7%)
Query: 13 IEEFATYLELEGK---------SRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKG 63
I+ F +Y+E+E + R + + ++ + ++ LAK R G
Sbjct: 15 IDSFLSYIEVERRLSPVTVENYQRQLMTIAQMMVAIKINQWSLLESQHVRMLLAKSHRSG 74
Query: 64 YSTRSLNLVIQALKAYFKFEGLD-----SEAEKLKTPKMPKTLPKSLTEEEVRRIINA-- 116
SL L AL+++ ++ + A+ ++TPK + LPK++ +EV +++N
Sbjct: 75 LQPASLALRFSALRSFLDWQVSQGMLAVNPAKGVRTPKSGRHLPKNMDVDEVSQLMNIDL 134
Query: 117 --AETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLL 174
++RDR +L ++YGAGLR+SEL NL + D++ + G + V G KG K+R VP+ +
Sbjct: 135 KDPLSVRDRTMLEVMYGAGLRLSELTNLNINDIDLQEGEVRVLG-KGSKERKVPLGRKAV 193
Query: 175 SEIKRYLESRNDDSPY-LFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE--LTPHQLRHS 231
++ + R SP V + K +LS ++V + + +G K G+ + PH+LRHS
Sbjct: 194 EWLQHWFAMRELYSPEDTAVFISTKSGKRLSVRSVQKRFELWGVKQGLSSHVNPHKLRHS 253
Query: 232 FATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
FATH+LE D+R +QELLGH+NLSTTQ+YT + +HL + A
Sbjct: 254 FATHLLESSGDLRAVQELLGHANLSTTQVYTHLDFQHLAKVYDAA 298
>pir||F81163 integrase/recombinase XerD NMB0751 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225980|gb|AAF41164.1| (AE002429)
integrase/recombinase XerD [Neisseria meningitidis MC58]
Length = 291
Score = 144 bits (360), Expect = 1e-33
Identities = 83/216 (38%), Positives = 132/216 (60%), Gaps = 22/216 (10%)
Query: 76 LKAYFKFEGL--DSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAET-----LRDRLILLL 128
L + + EG+ D+ LK PK+ K +P +TE+++ R++ A +T LRD+ +L L
Sbjct: 77 LYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTPHGLRDKALLEL 136
Query: 129 LYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY-------- 180
+Y GLRVSE L +V+ + G I G KG K R+VP+ + ++RY
Sbjct: 137 MYATGLRVSEAVGLNFGNVDLDRGCITALG-KGDKQRMVPMGQESAYWVERYYTEARPLL 195
Query: 181 LESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV-ELTPHQLRHSFATHMLER 239
L+ RN D+ LFV K K +S + W +VK+Y +AG+ ++PH LRH+FATH++
Sbjct: 196 LKGRNCDA--LFVSQK---KTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFATHLVRH 250
Query: 240 GIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKK 275
G+D+R++Q++LGH++L+TTQIYT V+ L+ VK+
Sbjct: 251 GLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKE 286
>pir||C81943 probable integrase/recombinase NMA0964 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7379667|emb|CAB84234.1| (AL162754) putative
integrase/recombinase [Neisseria meningitidis Z2491]
Length = 291
Score = 142 bits (354), Expect = 5e-33
Identities = 82/216 (37%), Positives = 132/216 (60%), Gaps = 22/216 (10%)
Query: 76 LKAYFKFEGL--DSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAET-----LRDRLILLL 128
L + + EG+ D+ LK PK+ K +P +TE+++ R++ A +T LRD+ +L L
Sbjct: 77 LYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTPHGLRDKALLEL 136
Query: 129 LYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY-------- 180
+Y GLRVSE L +V+ + G I G KG K R+VP+ + + RY
Sbjct: 137 MYATGLRVSEAVGLNFGNVDLDRGCITALG-KGDKQRMVPMGQESAYWVGRYYTEARPAL 195
Query: 181 LESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV-ELTPHQLRHSFATHMLER 239
L+ R+ D+ LFV K K +S + W +VK+Y +AG+ ++PH LRH+FATH+++
Sbjct: 196 LKGRSCDA--LFVSQK---KTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFATHLVQH 250
Query: 240 GIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKK 275
G+D+R++Q++LGH++L+TTQIYT V+ L+ VK+
Sbjct: 251 GLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKE 286
>sp|P39776|CODV_BACSU PROBABLE INTEGRASE/RECOMBINASE CODV >gi|2126913|pir||S72309 codV
protein - Bacillus subtilis >gi|7428933|pir||G69601
integrase/recombinase codV - Bacillus subtilis
>gi|535348|gb|AAB03369.1| (U13634) CodV [Bacillus
subtilis] >gi|2633986|emb|CAB13487.1| (Z99112)
integrase/recombinase [Bacillus subtilis]
Length = 304
Score = 141 bits (351), Expect = 1e-32
Identities = 93/280 (33%), Positives = 148/280 (52%), Gaps = 40/280 (14%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLN 70
D+IEEF T+L ++G I+ F E + +D FL + KG S R+++
Sbjct: 31 DSIEEFETFLRVQG------------INGFEEAAY----QDTRIFLTEAYEKGLSRRTIS 74
Query: 71 LVIQALKAYFKFEGLDSEAEK-----LKTPKMPKTLPKSLTEEEVRRIINAAET-----L 120
I AL++++KF + E+ + PK K +PK L ++E+ + ++ +
Sbjct: 75 KKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFEVSDISQPAGM 134
Query: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY 180
RD+ +L LLY G+RVSE C++ + DV+ ++V G KG K R +P +K Y
Sbjct: 135 RDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHG-KGKKQRYIPFGSYAREALKVY 193
Query: 181 LES--------RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAG--VELTPHQLRH 230
+ S + LFV +R L+ + + ++ +KA + + PH LRH
Sbjct: 194 MNSGRQCLLMKAKEPHDLLFVN---QRGGPLTARGIRHILSGLVQKASSTLHIHPHMLRH 250
Query: 231 SFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLK 270
+FATH+L G D+R +QELLGHSNLS+TQIYT VS + L+
Sbjct: 251 TFATHLLNEGADLRSVQELLGHSNLSSTQIYTHVSKEMLR 290
>pir||S30701 xerC protein - Escherichia coli >gi|148210|gb|AAA67607.1| (M87049)
member of the lambda integrase family of site-specific
recombinases [Escherichia coli]
Length = 298
Score = 141 bits (351), Expect = 1e-32
Identities = 88/229 (38%), Positives = 137/229 (59%), Gaps = 18/229 (7%)
Query: 55 FLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSE-----AEKLKTPKMPKTLPKSLTEEE 109
F + +RKG SL L + AL+++F + +E A+ + PK P+ LPK++ ++
Sbjct: 59 FAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDD 118
Query: 110 VRRI----INAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDR 165
+ R+ IN +RDR +L ++YGAGLR+SEL L ++ ++ E G + V G KG K+R
Sbjct: 119 MNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMG-KGSKER 177
Query: 166 VVPISESLLSEIKRYLESRN---DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE 222
+PI ++ I+ +L+ R+ + LF+ KR S + V + ++G K G+
Sbjct: 178 RLPIGRKPVAWIEHWLDLRDLFGSEDDALFLSKLGKRX---SARNVQKRFAEWGIKQGLN 234
Query: 223 --LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHL 269
+ PH+L HSFATHMLE D+R +QELLGH+NLSTTQIYT + +HL
Sbjct: 235 NHVHPHKLXHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHL 283
>sp|P44818|XERC_HAEIN INTEGRASE/RECOMBINASE XERC >gi|1074932|pir||F64085 probable
site-specific recombinase xerC - Haemophilus influenzae
(strain Rd KW20) >gi|1573676|gb|AAC22336.1| (U32750)
integrase/recombinase (xerC) [Haemophilus influenzae Rd]
Length = 295
Score = 140 bits (350), Expect = 1e-32
Identities = 101/287 (35%), Positives = 155/287 (53%), Gaps = 27/287 (9%)
Query: 13 IEEFATYLELEGK-SRNTVRMYTYYISKFF-----EEGHSPT--ARDALRF-LAKLKRKG 63
+ + YL +E + S +T+ Y + + ++ HS T +RF LA+ K++G
Sbjct: 5 LNRYWDYLRIERQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQG 64
Query: 64 YSTRSLNLVIQALKAYFKFEGLDSE-----AEKLKTPKMPKTLPKSLTEEEVRRII---- 114
+SL L + AL+ + F E A + PK + LPK++ E+V++++
Sbjct: 65 LKEKSLALRLSALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDS 124
Query: 115 NAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLL 174
+RDR IL L+Y +GLR+SEL L + +N + V G KG K+RVVP
Sbjct: 125 KEPIDIRDRAILELMYSSGLRLSELQGLDLNSINTRVREVRVIG-KGNKERVVPFGRYAS 183
Query: 175 SEIKRYLESR---NDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE--LTPHQLR 229
I+ +L+ R N LFV R +S + + + ++ +G + G+ L PH+LR
Sbjct: 184 HAIQEWLKVRALFNPKDEALFVSQLGNR---ISHRAIQKRLETWGIRQGLNSHLNPHKLR 240
Query: 230 HSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
HSFATHMLE D+R +QELLGHSNLSTTQIYT ++ +HL E +A
Sbjct: 241 HSFATHMLEASSDLRAVQELLGHSNLSTTQIYTHLNFQHLAEVYDQA 287
>pir||S61493 codV protein - Bacillus subtilis
Length = 304
Score = 139 bits (348), Expect = 3e-32
Identities = 93/280 (33%), Positives = 148/280 (52%), Gaps = 40/280 (14%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLN 70
D+IEEF T+L ++G I+ F E + +D FL + KG S R+++
Sbjct: 31 DSIEEFETFLRVQG------------INGFEEAAY----QDTRIFLTEAYEKGLSRRTIS 74
Query: 71 LVIQALKAYFKFEGLDSEAEK-----LKTPKMPKTLPKSLTEEEVRRIINAAET-----L 120
I AL++++KF + E+ + PK K +PK L ++E+ + ++ +
Sbjct: 75 KKISALRSFYKFLMREKLIEENPFQLVHLPKQEKRIPKFLYQKELEELFEVSDISQPAGM 134
Query: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY 180
RD+ +L LLY G+RVSE C++ + DV+ ++V G KG K R +P +K Y
Sbjct: 135 RDQALLELLYATGMRVSECCSITINDVDLFMDTVLVHG-KGKKQRYIPFGSYAREALKVY 193
Query: 181 LES--------RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAG--VELTPHQLRH 230
+ S + LFV +R L+ + + ++ +KA + + PH LRH
Sbjct: 194 MNSGRQCLLMKAKEPHDLLFVN---QRGGPLTARGIRHILSGLVQKASSTLHIHPHMLRH 250
Query: 231 SFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLK 270
+FATH+L G D+R +QELLGHSNLS+TQIYT VS + L+
Sbjct: 251 TFATHLLNEGADLRGLQELLGHSNLSSTQIYTHVSKEMLR 290
>pir||A82987 site-specific recombinase Sss PA5280 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951593|gb|AAG08665.1|AE004940_9 (AE004940)
site-specific recombinase Sss [Pseudomonas aeruginosa]
Length = 303
Score = 137 bits (342), Expect = 1e-31
Identities = 87/269 (32%), Positives = 151/269 (55%), Gaps = 18/269 (6%)
Query: 22 LEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNLVIQALKAYFK 81
L+G R+ +++ + ++ R F+A+L ++G S+RSL ++ A + ++
Sbjct: 23 LDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQGQSSRSLARLLSATRGLYQ 82
Query: 82 F---EGL--DSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAE-----TLRDRLILLLLYG 131
+ EG A L PK P+ LP++L + ++++ A RD+ +L L Y
Sbjct: 83 YLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQALLELFYS 142
Query: 132 AGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRNDDSPY- 190
+GLR+SEL L +E ++ + G++ VRG KG K R +P+ ++ ++ +L R +P
Sbjct: 143 SGLRLSELVGLDLEWLDLKEGLVRVRG-KGNKVRELPVGKAARQALEAWLPLRTQAAPED 201
Query: 191 --LFVEMKRKRKDKLSPKTVWRLVKKYG-RKAGVELTPHQLRHSFATHMLERGIDIRIIQ 247
+F+ KR L+P+ + V++ G R+ G L PH LRHSFA+H+LE D+R +Q
Sbjct: 202 GAVFIGRSGKR---LTPRAIQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSGDLRAVQ 258
Query: 248 ELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
ELLGH++++TTQIYT + +HL +A
Sbjct: 259 ELLGHADIATTQIYTHLDFQHLASVYDRA 287
>pir||S43156 sss protein - Pseudomonas aeruginosa >gi|468715|emb|CAA55226.1|
(X78478) sss [Pseudomonas aeruginosa]
Length = 302
Score = 137 bits (341), Expect = 2e-31
Identities = 86/262 (32%), Positives = 150/262 (56%), Gaps = 18/262 (6%)
Query: 22 LEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNLVIQALKAYFK 81
L+G R+ +++ + ++ R F+A+L ++G S+RSL ++ A + ++
Sbjct: 23 LDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQGQSSRSLARLLSATRGLYQ 82
Query: 82 F---EGL--DSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAE-----TLRDRLILLLLYG 131
+ EG A L+ PK P+ LP++L + ++++ A RD+ +L L Y
Sbjct: 83 YLLREGRCRHDPANGLRAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQALLELFYS 142
Query: 132 AGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRNDDSPY- 190
+GLR+SEL L +E ++ + G++ VRG KG K R +P+ ++ ++ +L R +P
Sbjct: 143 SGLRLSELVGLDLEWLDLKEGLVRVRG-KGNKVRELPVGKAARQALEAWLPLRTQAAPED 201
Query: 191 --LFVEMKRKRKDKLSPKTVWRLVKKYG-RKAGVELTPHQLRHSFATHMLERGIDIRIIQ 247
+F+ KR L+P+ + V++ G R+ G L PH LRHSFA+H+LE D+R +Q
Sbjct: 202 GAVFIGRSGKR---LTPRAIQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSGDLRAVQ 258
Query: 248 ELLGHSNLSTTQIYTKVSTKHL 269
ELLGH++++TTQIYT + +HL
Sbjct: 259 ELLGHADIATTQIYTHLDFQHL 280
>pir||S61402 site-specific recombinase sss - Pseudomonas aeruginosa
Length = 302
Score = 137 bits (341), Expect = 2e-31
Identities = 86/262 (32%), Positives = 150/262 (56%), Gaps = 18/262 (6%)
Query: 22 LEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNLVIQALKAYFK 81
L+G R+ +++ + ++ R F+A+L ++G S+RSL ++ A + ++
Sbjct: 23 LDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQGQSSRSLARLLSATRGLYQ 82
Query: 82 F---EGL--DSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAE-----TLRDRLILLLLYG 131
+ EG A L+ PK P+ LP++L + ++++ A RD+ +L L Y
Sbjct: 83 YLLREGRCRHDPANGLRAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQALLELFYS 142
Query: 132 AGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRNDDSPY- 190
+GLR+SEL L +E ++ + G++ VRG KG K R +P+ ++ ++ +L R +P
Sbjct: 143 SGLRLSELVGLDLEWLDLKEGLVRVRG-KGNKVRELPVGKAARQALEAWLPLRTQAAPED 201
Query: 191 --LFVEMKRKRKDKLSPKTVWRLVKKYG-RKAGVELTPHQLRHSFATHMLERGIDIRIIQ 247
+F+ KR L+P+ + V++ G R+ G L PH LRHSFA+H+LE D+R +Q
Sbjct: 202 GAVFIGRSGKR---LTPRAIQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSGDLRAVQ 258
Query: 248 ELLGHSNLSTTQIYTKVSTKHL 269
ELLGH++++TTQIYT + +HL
Sbjct: 259 ELLGHADIATTQIYTHLDFQHL 280
>gb|AAC46276.1| (AF028736) site specific recombinase [Serratia marcescens]
Length = 303
Score = 135 bits (337), Expect = 5e-31
Identities = 88/241 (36%), Positives = 144/241 (59%), Gaps = 25/241 (10%)
Query: 48 TARDALR---FLAKLKRKGYSTRSLNLVIQALKAYFKF---EGL--DSEAEKLKTPKMPK 99
T DA R A+ KR G + SL L + +L+++ + +G+ + A+ ++TP+ +
Sbjct: 53 TTLDAARVRMLAARSKRAGLQSASLALRLSSLRSFLDWLVSQGVLHANPAKGIRTPRSGR 112
Query: 100 TLPKSLTEEEVRRII----NAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIV 155
LPK++ +E+ +++ N +RDR +L ++YGAGLR+SEL L V+ G +
Sbjct: 113 HLPKNIDVDEMNQLLEIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVW 172
Query: 156 VRGGKGGKDRVVPISESLLSEIKRYLESRN-----DDSPYLFVEMKRKRKDKLSPKTVWR 210
V G KG K+R +PI + ++ ++ +L R+ DD+ +L + +R +S + V +
Sbjct: 173 VMG-KGSKERKLPIGRTAVTWLEHWLAMRDLFGPQDDAMFLSNQGRR-----ISTRNVQK 226
Query: 211 LVKKYGRKAGVE--LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKH 268
++G K GV + PH+LRHSFATHMLE D+R +QELLGH+NL+TTQIYT + +H
Sbjct: 227 RFAEWGVKQGVNSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTHLDFQH 286
Query: 269 L 269
L
Sbjct: 287 L 287
>pir||A82361 integrase/recombinase XerC VC0128 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654528|gb|AAF93305.1|
(AE004103) integrase/recombinase XerC [Vibrio cholerae]
Length = 311
Score = 134 bits (335), Expect = 9e-31
Identities = 84/232 (36%), Positives = 140/232 (60%), Gaps = 19/232 (8%)
Query: 60 KRKGYSTRSLNLVIQALKAYFKFEGLDSE-----AEKLKTPKMPKTLPKSLTEEEVRRII 114
KR+G S+ + +L+++ F L E A+ + P+ +TLPK+L +E+ +++
Sbjct: 73 KRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLL 132
Query: 115 NAAE----TLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPIS 170
+ ++RDR I+ L+YGAGLR++EL ++ ++DVN G I V G KG K+R V +
Sbjct: 133 EVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIG-KGNKERKVWFA 191
Query: 171 ESLLSEIKRYLESRND--DSPY--LFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV--ELT 224
+ ++L+ R+ DS LFV K ++S ++V + + ++G+K V ++
Sbjct: 192 GQAQEWVGKWLKLRSQLADSAETALFVS---KLGTRISHRSVQKRMAEWGQKQAVASHIS 248
Query: 225 PHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
PH+LRHSFATHMLE ++R +QELLGH N++TTQIYT + +HL + +A
Sbjct: 249 PHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQA 300
>gb|AAF89877.1| (AF173870) putative site-specific recombinase XerC [Staphylococcus
aureus]
Length = 298
Score = 133 bits (332), Expect = 2e-30
Identities = 98/286 (34%), Positives = 148/286 (51%), Gaps = 26/286 (9%)
Query: 14 EEFATYLELEGK-SRNTVRMYT---YYISKFFEEGHSPTA----RDALRFLAKLKRKGYS 65
E F L++E S +T++ Y ++F E+ H RDA +L+ L
Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYLNHLK 65
Query: 66 TRSLNLVIQALKAYFKF-----EGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAE-- 118
S++ I L+ +++ E + + L PK K LP+ EEE+ + E
Sbjct: 66 RTSVSRKISTLRTLYEYWMTLDENIINPFVHLVHPKKEKYLPQFSLEEEMEALFTTVEKD 125
Query: 119 ---TLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLS 175
LRDR+IL LLY G+RVSEL N++ +D++F + V G KG K+R VP
Sbjct: 126 TSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLG-KGSKERFVPFGAYCRQ 184
Query: 176 EIKRYLES----RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV-ELTPHQLRH 230
I+ YLE ++ + +L + MK + + + V + K R AGV E+ PH+LRH
Sbjct: 185 SIENYLEHFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVK--RTAGVSEIHPHKLRH 242
Query: 231 SFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
+FATH+L +G D+R +Q LLGH NLSTT YT VS + L++ A
Sbjct: 243 TFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNA 288
>sp|P10020|TNRI_BACTU TNP I RESOLVASE >gi|72982|pir||RSBSTI site-specific recombinase
tnpI - Bacillus thuringiensis transposon Tn4430
>gi|40317|emb|CAA31832.1| (X13481) TnpI resolvase
[Bacillus thuringiensis] >gi|40348|emb|CAA30491.1|
(X07651) put. resolvase Tnp I (AA 1 - 284) [Bacillus
thuringiensis]
Length = 284
Score = 133 bits (331), Expect = 3e-30
Identities = 91/288 (31%), Positives = 150/288 (51%), Gaps = 31/288 (10%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYIS---KFFEEGHSPTA-----RDALRFLAKLKR- 61
D ++F++YL+ E K+ NTV+ YT I K+FE + ++ L +++ LK
Sbjct: 2 DVAKQFSSYLKQENKTENTVQGYTSGIRQYIKWFEGSYDRKLTKLYRQNILEYISYLKNV 61
Query: 62 KGYSTRSLNLVIQALKAYFKF---EGLDSEAEKLKTPKMPKTL----PKSLTEEEVRRII 114
K + +S+N I +L + +F +G + LKT + P + E +V++ +
Sbjct: 62 KMLNAKSINHKISSLAKFNEFLIQKGSQQDQVILKTDMIKVQTVYASPTQIVELDVKKFL 121
Query: 115 NAA---ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISE 171
+ R+ I LL G+R+SE ++++ D N + G ++R GKGGK R+V ++
Sbjct: 122 QSVLEDNNKRNYAIATLLAYTGVRISEALSIKMNDFNLQTGECIIRSGKGGKQRIVLLNS 181
Query: 172 SLLSEIKRYLESRN-----DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPH 226
+LS IK YL R +SPYLF+ K+++KL V R+ K Y +TPH
Sbjct: 182 KVLSAIKDYLIDRKTYSTAHESPYLFIS---KKREKLDRTVVNRIFKSYSN----VITPH 234
Query: 227 QLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVK 274
QLRH F T+ +E+G I + GHSN+ TT +YT + LK ++
Sbjct: 235 QLRHFFCTNAIEKGFSIHEVANQAGHSNIHTTLLYTNPNQLQLKNKME 282
>pir||D70503 probable integrase/recombinase - Mycobacterium tuberculosis
(strain H37RV) >gi|2326744|emb|CAB10958.1| (Z98268)
hypothetical protein Rv1701 [Mycobacterium tuberculosis]
Length = 311
Score = 132 bits (329), Expect = 4e-30
Identities = 93/298 (31%), Positives = 154/298 (51%), Gaps = 43/298 (14%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKFF----EEGHSPTAR----DALRFLAKLKR-- 61
++ + +L +E G + NT+ Y + ++ E G + A+ D FL L+R
Sbjct: 8 LQGYLDHLTIERGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGD 67
Query: 62 --------KGYSTRSLNLVIQALKAYFKFEGLDS--EAEKLKTPKMPKTLPKSLTEEEVR 111
S + ++ L + EGL A ++ P + LPKSLT +EV
Sbjct: 68 PDSGTAALSAVSAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVL 127
Query: 112 RIINAAE---------TLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGG 162
++ A TLR+R +L LLY G R+SE L ++D++ +++RG KGG
Sbjct: 128 SLLEGAGGDKPSDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRG-KGG 186
Query: 163 KDRVVPISESLLSEIKRYLESRNDD-------SPYLFVEMKRKRKDKLSPKTVWRLVKKY 215
K R+VP+ + + YL D + +F+ R +LS ++ W++++
Sbjct: 187 KQRLVPVGRPAVHALDAYLVRGRPDLARRGRGTAAIFLNA---RGGRLSRQSAWQVLQDA 243
Query: 216 GRKAGVE--LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
+AG+ ++PH LRHSFATH+LE G D+R++QELLGH++++TTQIYT V+ L+E
Sbjct: 244 AERAGITAGVSPHMLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTLVTVHALRE 301
>pir||S72959 probable integrase - Mycobacterium leprae >gi|467161|gb|AAA50925.1|
(U00021) u0247d [Mycobacterium leprae]
Length = 316
Score = 131 bits (327), Expect = 7e-30
Identities = 89/283 (31%), Positives = 144/283 (50%), Gaps = 37/283 (13%)
Query: 22 LEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKR----------KGYSTRSLNL 71
L R+ +R + + E+ D FL L+R S +
Sbjct: 28 LSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEFLVALRRGDPDSGVAALSAVSAARALI 87
Query: 72 VIQALKAYFKFEGL-DSEAEKLKTPKMP-KTLPKSLTEEEVRRIINAAE---------TL 120
++ L + EGL D + + P P + LPKSLT +EV ++ + L
Sbjct: 88 AVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKSLTVDEVLALLESVGGESGADGPLVL 147
Query: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY 180
R+R +L LLY G R+SE L V+DV+ + ++++G KGGK R+VP+ + + Y
Sbjct: 148 RNRALLELLYSTGSRISEAVGLDVDDVDTQARTVLLQG-KGGKQRLVPVGRPAVQALDAY 206
Query: 181 LESRNDD----------SPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE--LTPHQL 228
L D +P +F+ R +LS ++ W++++ AG+ ++PH L
Sbjct: 207 LVRGRSDLARRGPGMLATPAIFLNA---RGGRLSRQSAWQVLQDAAEHAGITSGVSPHML 263
Query: 229 RHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
RHSFATH+LE G DIR++QEL+GH++++TTQIYT V+ + L+E
Sbjct: 264 RHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALRE 306
>gb|AAA50502.1| (U14952) integrase [Bergeyella zoohelcum] >gi|1098132|prf||2115270D
integrase [Weeksella zoohelcum]
Length = 259
Score = 131 bits (327), Expect = 7e-30
Identities = 81/222 (36%), Positives = 129/222 (57%), Gaps = 9/222 (4%)
Query: 51 DALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEV 110
D L +L K K K S + L+ K EGL + L K K LP L+++EV
Sbjct: 19 DYLFYLQK-KSKSPSQSYFKHTVYGLRFLLKSEGLSYDFLSLPEIKREKKLPVVLSKQEV 77
Query: 111 RRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPIS 170
++++ + L+ ++++ +LYG GLR E+ NLR+ D++F+ + V GKG KDR +P+S
Sbjct: 78 WQMLSGCKLLKHKILIGILYGCGLRCMEVRNLRLCDLDFDRKQLKVVQGKGKKDRYLPLS 137
Query: 171 ESLLSEIKRYLESRNDDSPYLFVEMKRKR-----KDKLSPKTVWRLVKKYGRKAGV--EL 223
E L+ +K+Y+E+ + YLF E + R + S + V VK+ + A + E+
Sbjct: 138 EHLIRGLKKYIEAEKPED-YLFGEPRGNRAGGEFDSRYSQRGVQWAVKQASKTANILKEV 196
Query: 224 TPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVS 265
+ H LRHSFATH+LE G+DI I+ LLGH ++ TT IY +++
Sbjct: 197 SVHTLRHSFATHLLEDGMDILSIKNLLGHESIDTTLIYLQIA 238
>emb|CAB08282.1| (Z95117) XerD [Mycobacterium leprae]
Length = 316
Score = 131 bits (327), Expect = 7e-30
Identities = 89/283 (31%), Positives = 144/283 (50%), Gaps = 37/283 (13%)
Query: 22 LEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKR----------KGYSTRSLNL 71
L R+ +R + + E+ D FL L+R S +
Sbjct: 28 LSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEFLVALRRGDPDSGVAALSAVSAARALI 87
Query: 72 VIQALKAYFKFEGL-DSEAEKLKTPKMP-KTLPKSLTEEEVRRIINAAE---------TL 120
++ L + EGL D + + P P + LPKSLT +EV ++ + L
Sbjct: 88 AVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKSLTVDEVLALLESVGGESRADGPLVL 147
Query: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY 180
R+R +L LLY G R+SE L V+DV+ + ++++G KGGK R+VP+ + + Y
Sbjct: 148 RNRALLELLYSTGSRISEAVGLDVDDVDTQARTVLLQG-KGGKQRLVPVGRPAVQALDAY 206
Query: 181 LESRNDD----------SPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE--LTPHQL 228
L D +P +F+ R +LS ++ W++++ AG+ ++PH L
Sbjct: 207 LVRGRSDLARRGPGMLATPAIFLNA---RGGRLSRQSAWQVLQDAAEHAGITSGVSPHML 263
Query: 229 RHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
RHSFATH+LE G DIR++QEL+GH++++TTQIYT V+ + L+E
Sbjct: 264 RHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALRE 306
>pir||A81978 probable integrase/recombinase NMA0588 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7379324|emb|CAB83879.1| (AL162753) putative
integrase/recombinase [Neisseria meningitidis Z2491]
Length = 305
Score = 131 bits (327), Expect = 7e-30
Identities = 99/300 (33%), Positives = 153/300 (51%), Gaps = 36/300 (12%)
Query: 8 VRDDTIEEFATYLE---LEGKSRNTVRMYTYYISKFF---------EEGHSP---TARDA 52
V D F YLE EGKS +TV Y + + F + G P + RD
Sbjct: 2 VLDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDF 61
Query: 53 LRFLAKLKRKGYSTRSLNLVIQALKAYFKF---EGL---DSEAEKLKTPKMPKTLPKSLT 106
L +L ++G + R+L + + + Y + GL D A+ +K PK P+ +PK+L
Sbjct: 62 TAALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTAD-IKPPKQPERVPKALP 120
Query: 107 EEEVRRIINAAE------TLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGK 160
+E + R+++ +RD + L+YG+GLRVSE+ L +DV + + V G K
Sbjct: 121 QEWLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTG-K 179
Query: 161 GGKDRVVPISESLLSEIKRYLESRN--DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRK 218
G K R VP++ + +K YL R D LF R LS + + + + ++ +
Sbjct: 180 GRKQRQVPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTR---LSQRQIQKRLAQWAAQ 236
Query: 219 AGV--ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
G ++PH +RHS+A H+L+ DIR +QELLGHS+LSTTQIYTK+ H+ +A
Sbjct: 237 NGDGRHVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEA 296
>pir||T10461 site-specific recombinase sss - Pseudomonas fluorescens
>gi|1929097|emb|CAA72946.1| (Y12268) Sss/XerC protein
[Pseudomonas fluorescens]
Length = 299
Score = 131 bits (325), Expect = 1e-29
Identities = 83/228 (36%), Positives = 130/228 (56%), Gaps = 18/228 (7%)
Query: 56 LAKLKRKGYSTRSLNLVIQALKAYFKF---EGL--DSEAEKLKTPKMPKTLPKSLTEEEV 110
+A+L ++G S+RSL ++ A++ + + EGL A L PK + LPK+L +
Sbjct: 57 IARLHQQGQSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLDTDRA 116
Query: 111 RRIINAAE-----TLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDR 165
+++ A RD+ IL L Y +GLR+SEL L ++ ++ G++ V G KG K R
Sbjct: 117 LQLLEGAVEDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLG-KGSKTR 175
Query: 166 VVPISESLLSEIKRYLESR---NDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYG-RKAGV 221
++P+ ++++L R N +FV + +R L P+ + VK G R+ G
Sbjct: 176 LLPVGRKAREALEQWLPLRALTNPADDAVFVSQQGRR---LGPRAIQLRVKAAGERELGQ 232
Query: 222 ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHL 269
L PH LRHSFA+H+LE D+R +QELLGHS++ TTQIYT + +HL
Sbjct: 233 NLHPHMLRHSFASHLLESSQDLRAVQELLGHSDIKTTQIYTHLDFQHL 280
>dbj|BAB06184.1| (AP001515) integrase/recombinase [Bacillus halodurans]
Length = 303
Score = 131 bits (325), Expect = 1e-29
Identities = 94/296 (31%), Positives = 157/296 (52%), Gaps = 35/296 (11%)
Query: 10 DDTIEEFATYLELE-GKSRNTVRMYTYYISKF--FEEGHSPTARDAL------RFLAKLK 60
D + F YL++E S +T+ Y + F F E S + A+ +L L
Sbjct: 6 DQWVSAFLLYLKMEKNHSPHTIVNYELDLRHFRDFMEQQSIPSFAAVSYAFVRHYLTVLY 65
Query: 61 RKGYSTRSLNLVIQALKAYFKFEG-----LDSEAEKLKTPKMPKTLPKSLTEEEVRRIIN 115
+ Y+ +++ + L+++++F +++ TPK K LP L EEE+ ++++
Sbjct: 66 EQEYARSTVSRKLSTLRSFYQFLVREKWVMENPFLLAHTPKGVKKLPSFLYEEEMEQLLD 125
Query: 116 AAE-----TLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPIS 170
A LR+R + +Y +GLRVSE C L+++DV+ G + V G KG K+R VPI
Sbjct: 126 ALNGDSPLQLRNRALFETIYASGLRVSECCGLKLQDVDLSIGTVFVFG-KGRKERYVPIG 184
Query: 171 ESLLSEIKRYLE---------SRNDDSPY-LFVEMKRKRKDKLSPKTVWRLVKKYGRKAG 220
I+ Y+E S++ D P LF+ R L+ + V +++ + +A
Sbjct: 185 SFACDAIQEYIENGREKLLKKSKSVDLPGDLFLNY---RGGPLTERGVRKILHQALDQAA 241
Query: 221 VE--LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVK 274
+ ++PH LRHSFATH+L G D+R++Q+LLGH NLSTTQ+YT V+ L++ +
Sbjct: 242 LSTRVSPHSLRHSFATHLLNNGADLRVVQDLLGHENLSTTQVYTHVTKDRLRDVYR 297
>pir||G71461 probable integrase/recombinase - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3329338|gb|AAC68462.1| (AE001359)
Integrase/recombinase [Chlamydia trachomatis]
Length = 300
Score = 130 bits (323), Expect = 2e-29
Identities = 93/287 (32%), Positives = 154/287 (53%), Gaps = 36/287 (12%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKFFEEGHSPTARDALR------FLAKLKRKGYS 65
IE+F +L ++ G S +V+ Y + F + S A D + F+ K + S
Sbjct: 12 IEQFTIFLSVDRGISPLSVQAYCQDVLLFLQRA-SIEATDRINQESVFLFVEKCHKAKES 70
Query: 66 TRSLNLVIQALKAYFKF----EGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETL- 120
+L + ALK +F F + LD + ++ PK+ K LP L+ EEV +++ +
Sbjct: 71 ETTLARRLIALKVFFHFLKDAKMLDQQPF-IEHPKIWKRLPSILSTEEVNSLLDQPLNIP 129
Query: 121 --------RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPIS-- 170
RD IL Y G+RVSELC+L + D++ ++ + GKG K R+VPIS
Sbjct: 130 NLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVT---GKGRKTRLVPISIK 186
Query: 171 -----ESLLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE-LT 224
++ LS + L+ +N ++F+ ++ K+ D+ VW+ + Y + + ++
Sbjct: 187 AKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDR---SCVWKRITFYAKLVTTKRIS 243
Query: 225 PHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
PH LRH+FATH+L D+RIIQE+LGHS +S+T+IYT V+++ L E
Sbjct: 244 PHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVASESLIE 290
>gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus
solfataricus]
Length = 291
Score = 129 bits (322), Expect = 3e-29
Identities = 80/285 (28%), Positives = 153/285 (53%), Gaps = 35/285 (12%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE----EGHSPTARDALRFLAKL------- 59
D F L + G T+++Y+ + F + + T+ D R+++ L
Sbjct: 13 DLYNAFINALIIAGAGNGTIKLYSTAVRDFLDFINKDPRKVTSEDLNRWISSLLNREGKV 72
Query: 60 -----KRKGYSTRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRII 114
++K + ++ I A++ + K+ + + + PK+ + K+L E ++++++
Sbjct: 73 KGDEVEKKRAKSVTIRYYIIAVRRFLKWINV---SVRPPIPKVRRKEVKALDEIQIQKVL 129
Query: 115 NAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLL 174
NA + +D+LI+ LL GLR +EL ++ V+D++ E +I VR K G++R+V ++
Sbjct: 130 NACKRTKDKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEERIVFFTDETK 189
Query: 175 SEIKRYLESRNDDSPYLFVEMKRKRKDKLSP---KTVWRLVKKYGRKAGVELTPHQLRHS 231
+++Y++ + K +DKL T++R +K+ G+K G++L PH LRH+
Sbjct: 190 LLLRKYIKGK-------------KAEDKLFDLKYDTLYRKLKRLGKKVGIDLRPHILRHT 236
Query: 232 FATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
FAT L+RGI++ +Q+LLGH ++ TTQIYT + L+ KA
Sbjct: 237 FATLSLKRGINVITLQKLLGHKDIKTTQIYTHLVLDDLRNEYLKA 281
>pir||F72129 integrase/recombinase - Chlamydophila pneumoniae (strain CWL029)
>gi|4376276|gb|AAD18177.1| (AE001587)
Integrase/recombinase [Chlamydophila pneumoniae CWL029]
>gi|8163493|gb|AAF73701.1| (AE002234)
integrase/recombinase, phage integrase family
[Chlamydophila pneumoniae AR39]
>gi|8978399|dbj|BAA98236.1| (AP002545)
integrase/recombinase [Chlamydophila pneumoniae J138]
Length = 312
Score = 129 bits (322), Expect = 3e-29
Identities = 77/239 (32%), Positives = 140/239 (58%), Gaps = 21/239 (8%)
Query: 55 FLAKLKRKGYSTRSLNLVIQALKAYFKFEG-----LDSEAEKLKTPKMPKTLPKSLTEEE 109
++AKL G + R++ + ++K++ + L++ AE + P++PK LP +T +
Sbjct: 74 YIAKLIENGKAKRTIKRCLSSIKSFAHYCVIQKILLENPAETIHGPRLPKELPSPMTYAQ 133
Query: 110 VRRI-----INAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKD 164
V + I+ LRDR ++ L Y +GLR+SE+ + +D + +I +RG KG K+
Sbjct: 134 VEVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTHLIRIRG-KGKKE 192
Query: 165 RVVPISESLLSEIKRYLESRN-----DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKA 219
R++P++ + + I+ YL + D +F+ +R +S +++ R ++Y R++
Sbjct: 193 RIIPVTSNAIQWIQIYLNHPDRKRLEKDPQAIFLNRFGRR---ISTRSIDRSFQEYLRRS 249
Query: 220 GVE--LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
G+ +TPH +RH+ ATH LE G+D++ IQ LLGHS+L TT +YT+VS K K+ ++A
Sbjct: 250 GLSGHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQVSVKLKKQTHQEA 308
>gb|AAF73578.1| (AE002331) integrase/recombinase, phage integrase family [Chlamydia
muridarum]
Length = 315
Score = 129 bits (322), Expect = 3e-29
Identities = 80/225 (35%), Positives = 134/225 (59%), Gaps = 21/225 (9%)
Query: 64 YSTRSLNLVIQALKAYFKFEGL-----DSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAE 118
+S R++ + A+K++ KF ++ AE ++ P++PK LP LT E+V +++A +
Sbjct: 83 HSKRTVRRRLSAIKSFAKFCVKNQWIPENPAEMIRGPRLPKELPSPLTYEQVLALMSAPD 142
Query: 119 T-----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESL 173
RDR +L L Y +GLR+SE+ L D++F+ ++ + G KG K+R+VP+++
Sbjct: 143 LDKVTGFRDRCLLELFYSSGLRISEITALNRSDIDFQSNLLRICG-KGKKERIVPMTKVA 201
Query: 174 LSEIKRYLESRN-----DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE--LTPH 226
+ ++ YL+ + D F+ KR LS +++ R ++Y K G+ +TPH
Sbjct: 202 VQWLQAYLDHPDRAAVEQDHQACFLNRFGKR---LSTRSIDRKFQQYLLKTGLSGTITPH 258
Query: 227 QLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
+RH+ ATH LERG+D++ IQ LLGH++L TT IYT VS K K+
Sbjct: 259 TIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQ 303
>pir||D71525 probable integrase/recombinase - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328768|gb|AAC67942.1| (AE001308)
Integrase/recombinase [Chlamydia trachomatis]
Length = 315
Score = 129 bits (321), Expect = 4e-29
Identities = 84/240 (35%), Positives = 141/240 (58%), Gaps = 22/240 (9%)
Query: 50 RDALR-FLAKLKRKGYSTRSLNLVIQALKAYFKFEGL-----DSEAEKLKTPKMPKTLPK 103
+D +R +L + + +S R++ + A+K++ +F ++ AE ++ P++P+ LP
Sbjct: 68 KDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPS 127
Query: 104 SLTEEEVRRIINAAET-----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRG 158
LT E+V ++ A E RDR +L L Y +GLR+SE+ L D++F+ ++ +RG
Sbjct: 128 PLTYEQVLALMAAPELDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHIRG 187
Query: 159 GKGGKDRVVPISESLLSEIKRYLE-----SRNDDSPYLFVEMKRKRKDKLSPKTVWRLVK 213
KG K+R+VP+++ + ++ YL S D F+ KR LS +++ R +
Sbjct: 188 -KGKKERIVPMTKVAVQWLQDYLNHPDRASVEQDHQACFLNRFGKR---LSTRSIDRKFQ 243
Query: 214 KYGRKAGVE--LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
+Y K G+ +TPH +RH+ ATH LERG+D++ IQ LLGH++L TT IYT VS K K+
Sbjct: 244 QYLLKTGLSGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQ 303
>pir||C82476 site-specific recombinase IntI4 VCA0291 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|3095165|gb|AAC38424.1| (AF055586) site-specific
recombinase IntIA [Vibrio cholerae]
>gi|5825613|gb|AAD53319.1|AF179591_1 (AF179591)
site-specific recombinase IntI4 [Vibrio cholerae]
>gi|9657688|gb|AAF96199.1| (AE004369) site-specific
recombinase IntI4 [Vibrio cholerae]
Length = 320
Score = 128 bits (318), Expect = 8e-29
Identities = 90/303 (29%), Positives = 154/303 (50%), Gaps = 66/303 (21%)
Query: 19 YLELEGKSRNTVRMYTYYISKF--FEEGHSPTA---RDALRFLAKLKRKG-YSTRSLNLV 72
+++ ++ T+ Y ++I+++ F P+ ++ FL L +G +T++ +L
Sbjct: 12 FMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLA 71
Query: 73 IQALKAYFKFEGLDSEAEKLKTP----------KMPKTLPKSLTEEEVRRIINAAETLRD 122
+ +L +K E LKTP ++ + LP LT +E+RR++ + +
Sbjct: 72 LNSLSFLYK--------EILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP-KH 122
Query: 123 RLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIK---- 178
+L + LLYG+GLR+ E LRV+D++F+YG I + GKGGK+R V +++ L +K
Sbjct: 123 QLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIA 182
Query: 179 -------RYLESRNDDSPYLFVEMKRK----------------------------RKDKL 203
R L +N +L +K K R+ +
Sbjct: 183 LAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHM 242
Query: 204 SPKTVWRLVKKYGRKAGVE--LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIY 261
+ + + V++ ++AG+E +T H LRHSFATH+LE G DIR +QE LGH+++ TTQIY
Sbjct: 243 NETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIY 302
Query: 262 TKV 264
T V
Sbjct: 303 THV 305
>sp|Q10815|YS94_MYCTU PROBABLE INTEGRASE/RECOMBINASE RV2894C >gi|7443325|pir||A70926
probable xerC protein - Mycobacterium tuberculosis
(strain H37RV) >gi|3250705|emb|CAA98378.1| (Z74024) xerC
[Mycobacterium tuberculosis]
Length = 298
Score = 127 bits (315), Expect = 2e-28
Identities = 101/293 (34%), Positives = 152/293 (51%), Gaps = 32/293 (10%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKFF----EEGHSPTAR--DALR-FLAKLKRKGY 64
++EF YL L+ G+S +T R Y + F + G S A LR +LA G
Sbjct: 5 LDEFDEYLALQCGRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAGA 64
Query: 65 STRSLNLVIQALKAYFKF---EGL--DSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAET 119
+ +L A+KA+ + GL A +L+ PK +TLP L +++ R + AAE+
Sbjct: 65 ARTTLARRTSAVKAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAES 124
Query: 120 ---------LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPIS 170
LRDRLI+ LLY G+RVSELC L V+D++ + ++ V G KG K R VP
Sbjct: 125 GAEQGDPLALRDRLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLG-KGNKQRTVPFG 183
Query: 171 ESLLSEIKRYLESRN------DDSPYLFVEMKRKRKDKLSPKT-VWRLVKKYGRKAGVEL 223
+ + +L + L + + +R D +T V + V ++
Sbjct: 184 QPAADALHAWLVDGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVD--GAPDM 241
Query: 224 TPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
PH LRHS ATH+LE G D+R++QELLGHS+L+TTQ+YT V+ L+ ++A
Sbjct: 242 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVARLRAVHERA 294
>pir||A81724 integrase/recombinase XerD TC0255 [imported] - Chlamydia muridarum
(strain Nigg) >gi|7190294|gb|AAF39124.1| (AE002292)
integrase/recombinase XerD [Chlamydia muridarum]
Length = 301
Score = 126 bits (313), Expect = 3e-28
Identities = 91/285 (31%), Positives = 148/285 (51%), Gaps = 32/285 (11%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKFFEEGHSPTA-----RDALRFLAKLKRKGYST 66
IE+F +L ++ G + +V+ Y I F + T F+ K + S
Sbjct: 12 IEQFTIFLSVDRGIAPLSVQAYCQDILLFLQRVPIETTDMINQESVFLFVEKCHQAKESE 71
Query: 67 RSLNLVIQALKAYFKF---EGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAA-ETL-- 120
+L + ALK +F F L + ++ PK+ K LP L+ EEV ++N TL
Sbjct: 72 TTLARRLIALKVFFHFLKDAKLIHQQPFIEHPKVWKRLPSILSTEEVNSLLNQPLNTLNL 131
Query: 121 ------RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPIS---- 170
RD IL Y G+RVSELC+L + D++ ++ + GKG K R+VPIS
Sbjct: 132 DAYIANRDTAILYTFYATGIRVSELCDLCIGDISDDFIRVT---GKGRKTRLVPISIKAR 188
Query: 171 ---ESLLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE-LTPH 226
+S L+ + + +N ++F+ ++ K KL VW+ + Y + + ++PH
Sbjct: 189 QTIDSYLTMFRERFQKKNPSEEHVFLSIRGK---KLERSCVWKRITFYAKLVTTKHISPH 245
Query: 227 QLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
LRH+FATH+L D+RIIQE+LGH+ +S+T+IYT V+++ + E
Sbjct: 246 SLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASESIIE 290
>emb|CAB10656.1| (Z97369) XerC protein [Mycobacterium leprae]
Length = 302
Score = 125 bits (312), Expect = 4e-28
Identities = 95/287 (33%), Positives = 150/287 (52%), Gaps = 32/287 (11%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKFFEEGHSPTAR------DALR-FLAKLKRKGY 64
++EF +L L G+S +T R Y + +R LR +LA G
Sbjct: 9 LDEFDEHLALRCGRSEHTRRAYLGDLRSLLTHLEGRGSRLDQLSLPVLRSWLATAAGAGA 68
Query: 65 STRSLNLVIQALKAYF---KFEG--LDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAET 119
+ +L I A+KA+ K+ G A +L+ P+ +TLP L +++ +I+ AA++
Sbjct: 69 ARTTLARRISAVKAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIMAAAKS 128
Query: 120 ---------LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPIS 170
LRDRLI+ +LY G+RVSELC L ++DV+ + ++ V G KG K R P
Sbjct: 129 GAEQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLG-KGNKQRTAPFG 187
Query: 171 ESLLSEIKRYLESRN------DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV-EL 223
++ +L+ + P L + + +R D +TV + + AG ++
Sbjct: 188 VPAADALRGWLDDGRPALVTVESGPALLLGSRGRRLDVRQARTV--VHQTVAVVAGAPDM 245
Query: 224 TPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLK 270
PH LRHS ATH+LE G D+R++QELLGHS+L+TTQ+YT V+ L+
Sbjct: 246 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLR 292
>pir||B71643 probable integrase/recombinase ripx (xerC) RP817 - Rickettsia
prowazekii >gi|3861343|emb|CAA15242.1| (AJ235273)
PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia
prowazekii]
Length = 305
Score = 125 bits (310), Expect = 7e-28
Identities = 97/299 (32%), Positives = 156/299 (51%), Gaps = 39/299 (13%)
Query: 11 DTIEEFATYLELEGK-SRNTVRMYT-----------YYISKFFEEGHSPTARDAL--RFL 56
+ I+++ YL L+ S NTV Y YY S+ H TA L +L
Sbjct: 8 ELIKQWQKYLILQKNYSNNTVIAYNNDLKHFLEFMNYYNSELVTLNHIKTADIRLIRSWL 67
Query: 57 AKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEK-----LKTPKMPKTLPKSLTEEEVR 111
AK K + ++ S+ + +K ++KF +K+PK K LPK L+ ++V
Sbjct: 68 AKRKCENFTASSIARGLSTVKNFYKFLEKTLLLNNHIIFSIKSPKKAKLLPKGLSVDDVL 127
Query: 112 RIINAAET--------LRDRLILLLLYGAGLRVSELCNL-RVEDVNFEYGVIVVRGGKGG 162
+ E LR++ +++L+Y AGLR+SE ++ ++ N E+ I+ GKG
Sbjct: 128 ISLEHIEEYGNVKWVELRNKALIVLIYAAGLRISEALSITKLHLQNLEFIKII---GKGS 184
Query: 163 KDRVVP---ISESLLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKA 219
K+R++P ++++L+++ L + D++ +F + ++ KL P R + K R
Sbjct: 185 KERIIPWLPLTKNLITKYLEILPYKLDENEPIF---RGRQGKKLQPSVFNRELIKLKRIY 241
Query: 220 GVE--LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
G+ LT H RHSFA+H+LE G D+R IQELLGH +LSTTQ YT+ S KHL+ A
Sbjct: 242 GLPEYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQTSIKHLEAVYNTA 300
>emb|CAA59018.1| (X84261) xerC recombinase [Lactobacillus leichmannii]
Length = 295
Score = 124 bits (309), Expect = 1e-27
Identities = 95/285 (33%), Positives = 154/285 (53%), Gaps = 34/285 (11%)
Query: 14 EEFATYLELEGK-SRNTVRMYTYYIS---KFFEE-----GHSPTARDALRFLAKLKRKGY 64
E+F +YL+ E S TV Y ++ KF++E G +R L +
Sbjct: 5 EQFLSYLKNERSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQKL 64
Query: 65 STRSLNLVIQALKAYFKF---EGL----DSEAEKLKTPKMPKTLPKSLTEEEVRRIINAA 117
++ +L+ + +LK++++ GL + A +L+ K K LP+ ++EV ++I +
Sbjct: 65 ASSTLSRKLSSLKSFYRLLTRRGLVKADPTVAIQLRRGK--KKLPEFFYQDEVGQVIRSL 122
Query: 118 E-----TLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISES 172
T+R+R I+ L Y G+R+SEL +L+++ ++ E G+I+V G KG KDR V +
Sbjct: 123 NDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHG-KGNKDRYVFFDQE 181
Query: 173 LLSEIKRYLE-------SRNDDSPYLFV-EMKRKRKDKLSPKTVWRLVKKYGRKAGVELT 224
++ YL+ D+ +F+ ++ R + K V ++ +K G AG
Sbjct: 182 SKKYLEEYLQVARPSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAH-- 239
Query: 225 PHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHL 269
PH+LRHSFAT ML G D+R +QELLGH +LSTTQIYT VS +HL
Sbjct: 240 PHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHL 284
>pir||A71332 probable integrase/recombinase (codV) - syphilis spirochete
>gi|3322669|gb|AAC65375.1| (AE001217)
integrase/recombinase (codV) [Treponema pallidum]
Length = 306
Score = 123 bits (307), Expect = 2e-27
Identities = 83/287 (28%), Positives = 142/287 (48%), Gaps = 27/287 (9%)
Query: 10 DDTIEEFATYL-ELEGKSRNTVRMYTYYISKFFEEGHSP------TARDALRFLAKLKRK 62
D ++ F YL E + T R Y + F + P A D +RF+ K
Sbjct: 5 DIRVQSFYAYLISAEAHALLTARTYVTTLMLFQKNLDPPCNIESANAHDCVRFIEKRSAA 64
Query: 63 GYSTRSLNLVIQALKAYFKFEGL-----DSEAEKLKTPKMPKTLPKSLTEEEVRRIINAA 117
G S +++ + AL A+++F L D+ + + P+ +LP+ L+ E+V + +
Sbjct: 65 GVSGKTIAKDMAALHAFYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTFLQSI 124
Query: 118 ET-----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISES 172
+RDR + L+Y AGLRVSE +L + D+ F ++ V G KG K+R+ P E
Sbjct: 125 PLCTPGGVRDRALFELIYAAGLRVSEAVSLSLSDIFFAERLLKVTG-KGNKERMAPFGEQ 183
Query: 173 LLSEIKRYLESRN---------DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVEL 223
+ +Y+ ++S ++ +LS K +W+ ++ ++GVE
Sbjct: 184 ACYFLMQYIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSGVET 243
Query: 224 TPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLK 270
H RHS+ATH+L G+D+ +Q LLGH++++TTQ+YT V L+
Sbjct: 244 HVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQLE 290
>pir||B81032 integrase/recombinase XerC NMB1868 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227126|gb|AAF42202.1| (AE002537)
integrase/recombinase XerC [Neisseria meningitidis MC58]
Length = 301
Score = 123 bits (306), Expect = 2e-27
Identities = 93/278 (33%), Positives = 144/278 (51%), Gaps = 29/278 (10%)
Query: 23 EGKSRNTVRMYTYYISKFF---EEGHSP-----TARDALRFLAKLKRKGYSTRSLNLVIQ 74
EGKS +TV Y + + EE S T D ++ L +L +G R+L +
Sbjct: 20 EGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLSGRGLGERTLARKLS 79
Query: 75 ALKAYFKF---EGL---DSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAE------TLRD 122
+ + Y + GL D A+ +K PK P+ +PK+L +E + R+++ +RD
Sbjct: 80 SWRQYCVWLVKRGLMHADPTAD-IKPPKQPERVPKALPQEWLNRMLDLPVDGGDPLAVRD 138
Query: 123 RLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLE 182
+ L+YG+GLRVSE+ L +DV + + V G KG K R VP+ + +K YL
Sbjct: 139 HALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIG-KGRKQRQVPLVGKSVEALKNYLP 197
Query: 183 SRN--DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV--ELTPHQLRHSFATHMLE 238
R D LF R LS + + + + ++ + G ++PH +RHS+A H+L+
Sbjct: 198 LRQTASDGKALFTGRNGTR---LSQRQIQKRLAQWAAQNGDGRHVSPHMMRHSYAGHLLQ 254
Query: 239 RGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
DIR +QELLGHS+LSTTQIYTK+ H+ +A
Sbjct: 255 ASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEA 292
>pir||B72005 integrase/recombinase XerD CP0828 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
>gi|4377356|gb|AAD19161.1| (AE001683)
Integrase/recombinase [Chlamydophila pneumoniae CWL029]
>gi|7189741|gb|AAF38621.1| (AE002242)
integrase/recombinase XerD [Chlamydophila pneumoniae
AR39] >gi|8979397|dbj|BAA99231.1| (AP002548)
integrase/recombinase [Chlamydophila pneumoniae J138]
Length = 301
Score = 122 bits (303), Expect = 5e-27
Identities = 88/285 (30%), Positives = 145/285 (50%), Gaps = 32/285 (11%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKFFEEGHSPTARDALR-----FLAKLKRKGYST 66
+E+F+ +L ++ G + ++ Y IS F + +D + F +L R+ +
Sbjct: 13 LEQFSLFLSVDRGLCQQSIAAYRQDISSFLTISAISSPQDISQNSVYIFAEELYRRKEAE 72
Query: 67 RSLNLVIQALKAYFKF---EGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETL--- 120
+L + ALK +F F + L ++ PK+ K LP LT +EV ++ +
Sbjct: 73 TTLARRLIALKVFFLFLKDQQLLPYPPIIEHPKIWKRLPSVLTPQEVDALLAVPLQMEKN 132
Query: 121 ------RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLL 174
RD IL LY G+RVSELC+LR+ V+ + + GKG K R+VP+
Sbjct: 133 PRHLAFRDTAILHTLYSTGVRVSELCDLRLGHVSDDCIRVT---GKGSKTRLVPLGSRAR 189
Query: 175 SEIKRYL-------ESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE-LTPH 226
I YL + +N +LF+ R KL VWR + Y ++ + ++PH
Sbjct: 190 EAIDAYLCPFRDQYQKKNPHEDHLFLST---RGHKLERSCVWRRIHNYAKQVTSKPVSPH 246
Query: 227 QLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKE 271
LRH+FATH+L+ D+R+IQE+LGH+ +++T++YT V+ L E
Sbjct: 247 SLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVAADSLIE 291
>gb|AAD55407.2|AF180939_1 (AF180939) site-specific recombinase IntI [Vibrio mimicus]
Length = 320
Score = 122 bits (303), Expect = 5e-27
Identities = 88/296 (29%), Positives = 148/296 (49%), Gaps = 66/296 (22%)
Query: 26 SRNTVRMYTYYISKF--FEEGHSPTA---RDALRFLAKLKRKG-YSTRSLNLVIQALKAY 79
++ T+ Y ++I+++ F P+ ++ FL L G + ++ +L + +L
Sbjct: 19 AKKTIEAYLHWITRYIYFHNKKHPSLMGDKEVELFLTHLAVNGNVAAKTQSLALNSLSFL 78
Query: 80 FKFEGLDSEAEKLKTP----------KMPKTLPKSLTEEEVRRIINAAETLRDRLILLLL 129
+K E LK P ++ + LP LT +E+RR+++ + + +L LL
Sbjct: 79 YK--------EILKMPLSLEIRFQRSQLERKLPVVLTRDEIRRLLDVVDP-KYQLPAKLL 129
Query: 130 YGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIK----------- 178
YG+GLR+ E LR++D++F+YG I + GKGGK+R V +++ L +K
Sbjct: 130 YGSGLRLMECIRLRIQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYD 189
Query: 179 RYLESRNDDSPYLFVEMKRK----------------------------RKDKLSPKTVWR 210
R L +N +L +K K R+ ++ + R
Sbjct: 190 RDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQR 249
Query: 211 LVKKYGRKAGVE--LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKV 264
V++ ++AG+E +T H LRHSFATH+LE G DIR +QE LGH+++ TTQIYT V
Sbjct: 250 TVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHV 305
>pir||D72312 integrase-recombinase protein - Thermotoga maritima (strain MSB8)
>gi|4981505|gb|AAD36046.1|AE001759_10 (AE001759)
integrase-recombinase protein [Thermotoga maritima]
Length = 253
Score = 122 bits (302), Expect = 6e-27
Identities = 85/267 (31%), Positives = 142/267 (52%), Gaps = 28/267 (10%)
Query: 13 IEEFATYLELEGKSRNTVRMYTYY-ISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNL 71
++E+ YL++ K R+ +Y Y I + F T +L + + +T+ L
Sbjct: 1 MDEYLEYLKVV-KKRSERTLYQYRSILREFTRFEPITPETWKEYLNTISKNAPATQRNKL 59
Query: 72 VIQALKAYFKFE---GLDSEAEKL---KTPKMPKTLPKSLTEEEVRRIINAAETLRDRLI 125
V+ +K Y + GL + E+ P LPK++ +EVRRII A + R I
Sbjct: 60 VV--VKNYLNWRADRGLLNAEERFWNEAEPPRHTVLPKAIELDEVRRIIEACDNPLYRAI 117
Query: 126 LLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRN 185
+L G+RVSE+ NL V D++ + GKG K+R++ +S+ L+ E+
Sbjct: 118 FKVLANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERIINVSKELVEELM------- 170
Query: 186 DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV--ELTPHQLRHSFATHMLERGIDI 243
+S + + K S +++ R VK+Y RKAG+ ++TPH RHSFA ++ERG+ +
Sbjct: 171 -NSGFF--------EKKPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGVPL 221
Query: 244 RIIQELLGHSNLSTTQIYTKVSTKHLK 270
IQ LLGH+N+STT IY K++++ ++
Sbjct: 222 NKIQALLGHANISTTSIYLKIASEGIE 248
>pir||B71693 integrase/recombinase xerd (xerD) RP361 - Rickettsia prowazekii
>gi|3860920|emb|CAA14820.1| (AJ235271)
INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia
prowazekii]
Length = 335
Score = 121 bits (300), Expect = 1e-26
Identities = 85/256 (33%), Positives = 135/256 (52%), Gaps = 34/256 (13%)
Query: 48 TARDALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAE-----KLKTPKMPKTLP 102
T + +++ L RS+N I +K+Y+ F ++ + + PK LP
Sbjct: 71 TTGNIRKWIEYLASNNLHARSINRKISTIKSYYAFLISENHTKFNPVLNIDLPKYQNKLP 130
Query: 103 KSLTEEEVRRII------NAAETLRDRLILLLLYGAGLRVSELCNLRVEDV---NFEYGV 153
L+ ++++ I+ N E +R ++ LLY +GLRVSEL +L++ D+ N G
Sbjct: 131 IILSIDQIKLILEYCSKDNTPEGIRLNAMINLLYASGLRVSELVSLKLADILTNNTSKGT 190
Query: 154 ---IVVRGGKGGKDRVVPISESLLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWR 210
I GKG K+RV+ I++ + I +YLE R+ + + K K L P +
Sbjct: 191 VRKIFSVLGKGNKERVIVINDQAVLSIIKYLEIRD----FFINKAKSKNLIYLFPSSAVA 246
Query: 211 ----------LVKKYGRKAGVE---LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLST 257
L+K G+ ++PH LRHSFA+H+LE G D+R+IQELLGH+++ST
Sbjct: 247 GYMTRQNFAILLKSVALYTGLNPEHVSPHILRHSFASHLLEGGADLRVIQELLGHADIST 306
Query: 258 TQIYTKVSTKHLKEAV 273
TQIYT + T HLK+A+
Sbjct: 307 TQIYTHLHTNHLKKAL 322
>pir||F82677 site-specific recombinase XF1483 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9106507|gb|AAF84292.1|AE003977_15
(AE003977) site-specific recombinase [Xylella
fastidiosa]
Length = 294
Score = 120 bits (298), Expect = 2e-26
Identities = 85/284 (29%), Positives = 142/284 (49%), Gaps = 23/284 (8%)
Query: 13 IEEFATYLELE-GKSRNTVRMYTYYISKFFEEGHSPTARDALR--------FLAKLKRKG 63
+++F +L +E G S +T+ Y I G + + F+A R+G
Sbjct: 5 VDDFFAFLHVERGMSAHTLDAYRRDIGALIAWGVQQAVGEVVALDRAQLQAFVAAEHRRG 64
Query: 64 YSTRSLNLVIQALKAYFKF-----EGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAE 118
S +SL + A + ++ + + A L+ PK + LP+ L +E +
Sbjct: 65 LSAKSLQRRLSACRGFYAWLVKRGHIAINPAAGLRAPKALRKLPRILDADEAVSFVQIPT 124
Query: 119 T----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLL 174
LRDR +L L Y +GLR+SELC LR V+ + G++ V G KG + RVVP+ L
Sbjct: 125 DTPLGLRDRALLELFYSSGLRLSELCGLRWGGVDLDAGLVSVLG-KGSRQRVVPVGSYAL 183
Query: 175 SEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV--ELTPHQLRHSF 232
S ++ + S + + +S + V +K+ ++ G+ + PH LRHSF
Sbjct: 184 SALREWCASSGGGAQQPV--FPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSF 241
Query: 233 ATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
A+H+LE D+R +QELLGH++++TTQIYT + ++L + A
Sbjct: 242 ASHLLESSGDLRGVQELLGHADITTTQIYTHLDFQYLSKVYDAA 285
>gb|AAA74432.1| (U32685) RipX [Bacillus subtilis]
Length = 163
Score = 118 bits (293), Expect = 7e-26
Identities = 68/161 (42%), Positives = 96/161 (59%), Gaps = 9/161 (5%)
Query: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY 180
RD+ +L LLY G+RVSE+ L+ DV+ G I G KG K+R+VPI E+ S I+ Y
Sbjct: 1 RDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFG-KGRKERIVPIGEAAASAIEEY 59
Query: 181 LES------RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFAT 234
+ +N+ S LF+ R + + + G + ELTPH LRHSFAT
Sbjct: 60 MTKARGKLLKNNVSDALFLNHHGNRSAARILEEPEK--NRIGSRHKKELTPHTLRHSFAT 117
Query: 235 HMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKK 275
H+LE G D+R +QE+LGH+++STTQIYT V+ LK+ K+
Sbjct: 118 HLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQ 158
>gb|AAF44051.1|AF206717_5 (AF206717) ResU [Shuttle vector pI3]
Length = 321
Score = 116 bits (289), Expect = 2e-25
Identities = 88/299 (29%), Positives = 150/299 (49%), Gaps = 42/299 (14%)
Query: 13 IEEFATYLELE-GKSRNTVRMY---TYYISKFFEEGHSP-----------TARDALRFLA 57
IE +A YL E G+S TVR Y + + + P +A D FLA
Sbjct: 7 IEIWAHYLAKEQGRSPATVREYLKDVRLLRSWLDAEDKPQHLRGRDWGELSAADLRAFLA 66
Query: 58 KLKRKGYSTRSLNLVIQALKAYFKF-------EGLDSEAEKLKTPKMPKTLPKSLTEEEV 110
S R + ++ + +++++F G+ L TPK+PK P LT E+V
Sbjct: 67 AADP---SPRRFHRLVNSWRSFWRFLVRVQKLPGVQDITADLTTPKIPKRAPVKLTLEDV 123
Query: 111 RRIINAA-------ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYG--VIVVRGGKG 161
+++ L++ I+ LYG GLR+SE+ ++ D+ ++ G V V GKG
Sbjct: 124 SKLLEVVYRDKSPQRGLKNWCIVAFLYGTGLRISEMLAMKFADIEYQDGSPVAVRVIGKG 183
Query: 162 GKDRVVPISESLLSEIKRYLESR----NDDSPYLFVEMKRKRK-DKLSPKTVWRLVKKYG 216
K+R VP+S + + R+L R N +P+++ + KR ++ +T+ +++
Sbjct: 184 DKERRVPLSPTAQGALMRWLRERKTHGNPVTPWVWSPLSGKRYGQQMQARTIGKMLDTAA 243
Query: 217 RKAGVE---LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEA 272
+AG++ ++PH+LRH+FAT +L G + I+ELLGH N+ TT IY + T+ + A
Sbjct: 244 ERAGLDPATVSPHKLRHTFATTLLNNGRTLDEIKELLGHENIQTTMIYAQTDTRRVAAA 302
>gi|9507567 integrase for In2 [Plasmid R100] >gi|124696|sp|P09999|INT2_ECOLI
INTEGRASE/RECOMBINASE (E2 PROTEIN) >gi|78728|pir||C26839
integrase - Escherichia coli plasmid and transposons
>gi|281521|pir||A42646 integrase - Pseudomonas
aeruginosa >gi|2120150|pir||I39499 integrase -
Acinetobacter baumannii >gi|42207|emb|CAA29442.1|
(X06046) integrase open reading frame 3 (AA 1 - 337)
[Escherichia coli] >gi|48206|emb|CAA31361.1| (X12870) E2
integrase-like gene product (AA 1-337) [Escherichia
coli] >gi|151300|gb|AAA25857.1| (M73819) integrase
[Pseudomonas aeruginosa] >gi|151817|gb|AAB59081.1|
(M95287) integrase [Plasmid R46]
>gi|530814|gb|AAC44315.1| (U49101) DNA integrase
[Pseudomonas aeruginosa] >gi|596251|gb|AAA56784.1|
(U17586) integrase [Acinetobacter baumannii]
>gi|3088617|gb|AAC14727.1| (AF047479) DNA integrase
[Plasmid NR79] >gi|3513661|gb|AAC33911.1| (AF071413)
IntI1 DNA integrase [Escherichia coli]
>gi|5103166|dbj|BAA78802.1| (AP000342) integrase for In2
[Plasmid R100] >gi|6752460|gb|AAF27722.1|AF156486_1
(AF156486) integrase INTI1 [Klebsiella pneumoniae]
>gi|7381448|gb|AAF61482.1|AF191564_1 (AF191564)
integrase [Pseudomonas aeruginosa]
>gi|8176635|emb|CAB92435.1| (AJ289190) class 1 integrase
[Acinetobacter baumannii]
Length = 337
Score = 116 bits (287), Expect = 4e-25
Identities = 99/307 (32%), Positives = 145/307 (46%), Gaps = 62/307 (20%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE---EGHSPTARDA-----LRFLAKLKRK 62
D + E YL S T + Y +++ F H T + L +LA ++
Sbjct: 18 DQLRERIRYLHY---SLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKV 74
Query: 63 GYSTRSLNLVIQALKAYFKFEG--LDSEA---EKLKTPKMPKTLPKSLTEEEVRRIINAA 117
ST QAL A F G L ++ +++ P+ + LP LT +EV RI+
Sbjct: 75 SVSTHR-----QALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFL 129
Query: 118 ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEI 177
E RL LLYG G+R+SE LRV+D++F++G I+VR GKG KDR + + ESL +
Sbjct: 130 EG-EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188
Query: 178 KRYL------------ESRNDDS----------------PYLFVEMKRK----------R 199
+ L E R+ + P+ +V + R
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248
Query: 200 KDKLSPKTVWRLVKKYGRKAGV--ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLST 257
+ + +T R K+ +AG+ TPH LRHSFAT +L G DIR +Q+LLGHS++ST
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308
Query: 258 TQIYTKV 264
T IYT V
Sbjct: 309 TMIYTHV 315
>gb|AAA91585.1| (J02967) recombinase [Plasmid RGN238]
>gi|8118290|gb|AAF72980.1|AF255921_1 (AF255921)
recombinase [Shigella flexneri]
Length = 337
Score = 116 bits (287), Expect = 4e-25
Identities = 98/307 (31%), Positives = 144/307 (45%), Gaps = 62/307 (20%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE---EGHSPTARDA-----LRFLAKLKRK 62
D + E YL S T + Y +++ F H T + L +LA ++
Sbjct: 18 DQLRERIRYLHY---SLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKV 74
Query: 63 GYSTRSLNLVIQALKAYFKFEG--LDSEA---EKLKTPKMPKTLPKSLTEEEVRRIINAA 117
ST QAL A F G L ++ +++ P+ + LP LT +EV RI+
Sbjct: 75 SVSTHR-----QALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFL 129
Query: 118 ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEI 177
E RL LLYG G+R+SE LRV+D++F++G I+VR GKG KDR + + ESL +
Sbjct: 130 EG-EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188
Query: 178 KRYL----------ESRNDDSPYLFVEMKRK----------------------------R 199
+ L +++ L ++RK R
Sbjct: 189 REQLSRARAWWLKDQAQGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248
Query: 200 KDKLSPKTVWRLVKKYGRKAGV--ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLST 257
+ + +T R K+ +AG+ TPH LRHSFAT +L G DIR +Q+LLGHS++ST
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308
Query: 258 TQIYTKV 264
T IYT V
Sbjct: 309 TMIYTHV 315
>gb|AAA88676.1| (M33633) unknown protein [Transposon Tn21]
Length = 337
Score = 116 bits (287), Expect = 4e-25
Identities = 98/307 (31%), Positives = 146/307 (46%), Gaps = 62/307 (20%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE---EGHSPTARDA-----LRFLAKLKRK 62
D + E YL S T + Y +++ F H T + L +LA ++
Sbjct: 18 DQLRERIRYLHY---SLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKV 74
Query: 63 GYSTRSLNLVIQALKAYFKFEG--LDSEA---EKLKTPKMPKTLPKSLTEEEVRRIINAA 117
ST QAL A F G L ++ +++ P+ + LP LT +EV RI+
Sbjct: 75 SVSTHR-----QALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFL 129
Query: 118 ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEI 177
E RL LLYG G+R+SE LRV+D++F++G I+VR GKG KDR + + ESL +
Sbjct: 130 EG-EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188
Query: 178 KRYL------------ESRNDDS----------------PYLFVEMKRK----------R 199
+ ++ E R+ + P+ +V + R
Sbjct: 189 REHVSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248
Query: 200 KDKLSPKTVWRLVKKYGRKAGV--ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLST 257
+ + +T R K+ +AG+ TPH LRHSFAT +L G DIR +Q+LLGHS++ST
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308
Query: 258 TQIYTKV 264
T IYT V
Sbjct: 309 TMIYTHV 315
>pir||S04809 integrase-like protein E2 - Escherichia coli plasmid pLMO20
>gi|45673|emb|CAA31355.1| (X12868) E2 gene product (AA
1-337) [Plasmid pLMO20]
Length = 337
Score = 115 bits (286), Expect = 5e-25
Identities = 77/215 (35%), Positives = 112/215 (51%), Gaps = 41/215 (19%)
Query: 90 EKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF 149
+++ P+ + LP LT +EV RI+ E RL LLYG G+R+SE LRV+D++F
Sbjct: 102 QEIGRPRPSRRLPVVLTPDEVVRILGFLEG-EHRLFAQLLYGTGMRISEGLQLRVKDLDF 160
Query: 150 EYGVIVVRGGKGGKDRVVPISESLLSEIKRYL------------ESRNDDS--------- 188
++G I+VR GKG KDR + + ESL ++ L E R+ +
Sbjct: 161 DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKY 220
Query: 189 -------PYLFVEMKRK----------RKDKLSPKTVWRLVKKYGRKAGV--ELTPHQLR 229
P+ +V + R+ + +T R K+ +AG+ TPH LR
Sbjct: 221 PRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLR 280
Query: 230 HSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKV 264
HSFAT +L G DIR +Q+LLGHS++STT IYT V
Sbjct: 281 HSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315
>gi|10955228 Int [Enterobacter aerogenes] >gi|321892|pir||S32184 integrase -
Klebsiella pneumoniae >gi|7444560|pir||T08516 integrase
- Enterobacter aerogenes plasmid R751
>gi|11278374|pir||T45120 integrase [imported] -
Escherichia coli plasmid pDGO100
>gi|149117|gb|AAA92744.1| (L06418) integrase
[Escherichia coli] >gi|288634|emb|CAA51182.1| (X72585)
integrase [Klebsiella aerogenes]
>gi|1572565|gb|AAC64460.1| (U67194) Int [Enterobacter
aerogenes]
Length = 337
Score = 115 bits (286), Expect = 5e-25
Identities = 77/215 (35%), Positives = 112/215 (51%), Gaps = 41/215 (19%)
Query: 90 EKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF 149
+++ P+ + LP LT +EV RI+ E RL LLYG G+R+SE LRV+D++F
Sbjct: 102 QEIGRPRPSRRLPVVLTPDEVVRILGFLEG-EHRLFAQLLYGTGMRISEGLQLRVKDLDF 160
Query: 150 EYGVIVVRGGKGGKDRVVPISESLLSEIKRYL------------ESRNDDS--------- 188
++G I+VR GKG KDR + + ESL ++ L E R+ +
Sbjct: 161 DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKY 220
Query: 189 -------PYLFVEMKRK----------RKDKLSPKTVWRLVKKYGRKAGV--ELTPHQLR 229
P+ +V + R+ + +T R K+ +AG+ TPH LR
Sbjct: 221 PRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLR 280
Query: 230 HSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKV 264
HSFAT +L G DIR +Q+LLGHS++STT IYT V
Sbjct: 281 HSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315
>emb|CAA67039.1| (X98393) integrase [Pseudomonas aeruginosa]
Length = 336
Score = 115 bits (286), Expect = 5e-25
Identities = 99/307 (32%), Positives = 145/307 (46%), Gaps = 62/307 (20%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE---EGHSPTARDA-----LRFLAKLKRK 62
D + E YL S T + Y +++ F H T + L +LA ++
Sbjct: 18 DQLRERIRYLHY---SLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKV 74
Query: 63 GYSTRSLNLVIQALKAYFKFEG--LDSEA---EKLKTPKMPKTLPKSLTEEEVRRIINAA 117
ST QAL A F G L ++ +++ P+ + LP LT +EV RI+
Sbjct: 75 SVSTHR-----QALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFL 129
Query: 118 ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEI 177
E RL LLYG G+R+SE LRV+D++F++G I+VR GKG KDR + + ESL +
Sbjct: 130 EG-EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTL 188
Query: 178 KRYL------------ESRNDDS----------------PYLFVEMKRK----------R 199
+ L E R+ + P+ +V + R
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248
Query: 200 KDKLSPKTVWRLVKKYGRKAGV--ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLST 257
+ + +T R K+ +AG+ TPH LRHSFAT +L G DIR +Q+LLGHS++ST
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308
Query: 258 TQIYTKV 264
T IYT V
Sbjct: 309 TMIYTHV 315
>emb|CAA75043.1| (Y14748) int [Corynebacterium glutamicum]
>gi|3661459|gb|AAC64362.1| (AF078527) class I integrase
[Pseudomonas aeruginosa] >gi|4063851|gb|AAC98492.1|
(AF071555) integrase [Salmonella typhimurium DT104]
>gi|5107035|gb|AAD39931.1|AF133699_1 (AF133699) integron
In50 integrase [Pseudomonas aeruginosa]
>gi|5420398|emb|CAB46685.1| (Y18050) DNA integrase
[Pseudomonas aeruginosa]
>gi|9836716|gb|AAG00280.1|AF164956_12 (AF164956) DNA
integrase IntI [Corynebacterium glutamicum]
>gi|10185692|gb|AAG14404.1|AF188331_3 (AF188331)
putative integrase [Shigella flexneri]
Length = 337
Score = 115 bits (286), Expect = 5e-25
Identities = 77/215 (35%), Positives = 112/215 (51%), Gaps = 41/215 (19%)
Query: 90 EKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF 149
+++ P+ + LP LT +EV RI+ E RL LLYG G+R+SE LRV+D++F
Sbjct: 102 QEIGRPRPSRRLPVVLTPDEVVRILGFLEG-EHRLFAQLLYGTGMRISEGLQLRVKDLDF 160
Query: 150 EYGVIVVRGGKGGKDRVVPISESLLSEIKRYL------------ESRNDDS--------- 188
++G I+VR GKG KDR + + ESL ++ L E R+ +
Sbjct: 161 DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKY 220
Query: 189 -------PYLFVEMKRK----------RKDKLSPKTVWRLVKKYGRKAGV--ELTPHQLR 229
P+ +V + R+ + +T R K+ +AG+ TPH LR
Sbjct: 221 PRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLR 280
Query: 230 HSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKV 264
HSFAT +L G DIR +Q+LLGHS++STT IYT V
Sbjct: 281 HSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315
>dbj|BAA23767.1| (D78374) integrase [Pseudomonas aeruginosa]
Length = 337
Score = 115 bits (286), Expect = 5e-25
Identities = 77/215 (35%), Positives = 112/215 (51%), Gaps = 41/215 (19%)
Query: 90 EKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF 149
+++ P+ + LP LT +EV RI+ E RL LLYG G+R+SE LRV+D++F
Sbjct: 102 QEIGRPRPSRRLPVVLTPDEVVRILGFLEG-EHRLFAQLLYGTGMRISEGLQLRVKDLDF 160
Query: 150 EYGVIVVRGGKGGKDRVVPISESLLSEIKRYL------------ESRNDDS--------- 188
++G I+VR GKG KDR + + ESL ++ L E R+ +
Sbjct: 161 DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKY 220
Query: 189 -------PYLFVEMKRK----------RKDKLSPKTVWRLVKKYGRKAGV--ELTPHQLR 229
P+ +V + R+ + +T R K+ +AG+ TPH LR
Sbjct: 221 PRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLR 280
Query: 230 HSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKV 264
HSFAT +L G DIR +Q+LLGHS++STT IYT V
Sbjct: 281 HSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315
>emb|CAA11470.1| (AJ223604) intI1 [Pseudomonas aeruginosa]
Length = 337
Score = 115 bits (286), Expect = 5e-25
Identities = 99/307 (32%), Positives = 145/307 (46%), Gaps = 62/307 (20%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE---EGHSPTARDA-----LRFLAKLKRK 62
D + E YL S T + Y +++ F H T + L +LA ++
Sbjct: 18 DQLRERIRYLHY---SLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKV 74
Query: 63 GYSTRSLNLVIQALKAYFKFEG--LDSEA---EKLKTPKMPKTLPKSLTEEEVRRIINAA 117
ST QAL A F G L ++ +++ P+ + LP LT +EV RI+
Sbjct: 75 SVSTHR-----QALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFL 129
Query: 118 ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEI 177
E RL LLYG G+R+SE LRV+D++F++G I+VR GKG KDR + + ESL +
Sbjct: 130 EG-EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTL 188
Query: 178 KRYL------------ESRNDDS----------------PYLFVEMKRK----------R 199
+ L E R+ + P+ +V + R
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248
Query: 200 KDKLSPKTVWRLVKKYGRKAGV--ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLST 257
+ + +T R K+ +AG+ TPH LRHSFAT +L G DIR +Q+LLGHS++ST
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308
Query: 258 TQIYTKV 264
T IYT V
Sbjct: 309 TMIYTHV 315
>gb|AAA72104.1| (M86913) integrase [Transposon Tn2426]
Length = 337
Score = 115 bits (286), Expect = 5e-25
Identities = 77/215 (35%), Positives = 112/215 (51%), Gaps = 41/215 (19%)
Query: 90 EKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF 149
+++ P+ + LP LT +EV RI+ E RL LLYG G+R+SE LRV+D++F
Sbjct: 102 QEIGRPRPSRRLPVVLTPDEVVRILGFLEG-EHRLFAQLLYGTGMRISEGLQLRVKDLDF 160
Query: 150 EYGVIVVRGGKGGKDRVVPISESLLSEIKRYL------------ESRNDDS--------- 188
++G I+VR GKG KDR + + ESL ++ L E R+ +
Sbjct: 161 DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKY 220
Query: 189 -------PYLFVEMKRK----------RKDKLSPKTVWRLVKKYGRKAGV--ELTPHQLR 229
P+ +V + R+ + +T R K+ +AG+ TPH LR
Sbjct: 221 PRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLR 280
Query: 230 HSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKV 264
HSFAT +L G DIR +Q+LLGHS++STT IYT V
Sbjct: 281 HSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315
>pir||JQ0300 hypothetical 38.4K protein - Pseudomonas aeruginosa
>gi|45766|emb|CAA33849.1| (X15852) open reading frame
(AA 1-337), put. integrase [Enterobacteriaceae]
>gi|530804|gb|AAB59999.1| (U12338) IntI1 integrase
[Pseudomonas aeruginosa]
Length = 337
Score = 115 bits (285), Expect = 6e-25
Identities = 77/215 (35%), Positives = 112/215 (51%), Gaps = 41/215 (19%)
Query: 90 EKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF 149
+++ P+ + LP LT +EV RI+ E RL LLYG G+R+SE LRV+D++F
Sbjct: 102 QEIGRPRPSRRLPVVLTPDEVVRILGFLEG-EHRLFAQLLYGTGMRISEGLQLRVKDLDF 160
Query: 150 EYGVIVVRGGKGGKDRVVPISESLLSEIKRYL------------ESRNDDS--------- 188
++G I+VR GKG KDR + + ESL ++ L E R+ +
Sbjct: 161 DHGTIIVREGKGSKDRALMLPESLAPTLREQLSRARAWWLKDQAEGRSGVALPDALERKY 220
Query: 189 -------PYLFVEMKRK----------RKDKLSPKTVWRLVKKYGRKAGV--ELTPHQLR 229
P+ +V + R+ + +T R K+ +AG+ TPH LR
Sbjct: 221 PRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLR 280
Query: 230 HSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKV 264
HSFAT +L G DIR +Q+LLGHS++STT IYT V
Sbjct: 281 HSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHV 315
>gi|10955456 The peptide is not translated beyond amino acid 178 unless a TAA
codon is suppressed~readthrough product [Escherichia
coli] >gi|9971650|dbj|BAB12601.1| (AP002527) The peptide
is not translated beyond amino acid 178 unless a TAA
codon is suppressed~readthrough product [Escherichia
coli]
Length = 325
Score = 114 bits (282), Expect = 1e-24
Identities = 91/304 (29%), Positives = 142/304 (45%), Gaps = 50/304 (16%)
Query: 13 IEEFATYLELEGKSRNTVRMYTYYISKFF---EEGHSPT-----ARDALRFLAKLKRKGY 64
+ T + +G + T + Y ++I +F ++ H T R L LA +
Sbjct: 7 LNSIRTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMGSEEVRLFLSSLANSRHVAI 66
Query: 65 STRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRL 124
+T+ + L A + + + + K P+ LP ++ EV+RI+ +T R+++
Sbjct: 67 NTQKIALNALAFLYNRFLQQPLGDIDYIPASK-PRRLPSVISANEVQRILQVMDT-RNQV 124
Query: 125 ILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLES- 183
I LLYGAGLR++E LRV+D +F+ G I V GKGGK R + L+ IK +E
Sbjct: 125 IFTLLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPAIKXLIEQA 184
Query: 184 ---RNDDS-----PYLFVEMKRKR----------------------------KDKLSPKT 207
+ DD+ P L + K + L
Sbjct: 185 RLIQQDDNLQGVGPSLPFALDHKYPSAYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSV 244
Query: 208 VWRLVKKYGRKAGV---ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKV 264
+ +K +KAG+ +T H RHSFATH+L+ G DIR +QELLGH+++ TTQIYT V
Sbjct: 245 ARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHV 304
Query: 265 STKH 268
+H
Sbjct: 305 LGQH 308
>sp|P55632|Y4QK_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4QK >gi|2182597|gb|AAB92466.1|
(AE000093) Y4qK [Rhizobium sp. NGR234]
Length = 308
Score = 111 bits (276), Expect = 7e-24
Identities = 86/276 (31%), Positives = 137/276 (49%), Gaps = 18/276 (6%)
Query: 3 EREERVRDDTIEEFATYLELEGKSRNTVRMYTYYISKFFEE-GHSPT--ARDALR----F 55
+ EE V + + +++ S NT Y +S F G +P R+ +R +
Sbjct: 11 QTEELVMTPLRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAPDLLGREDIRTYQVY 70
Query: 56 LAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSE---AEKLKTPKMPKTLPKSLTEEEVRR 112
LA K+ + S+++ I AL+ +F L+ + AE L PK P+ LP L+ +EV+
Sbjct: 71 LANEKK--LAPNSIHIAIAALRFFFSVT-LERDWVPAEVLPLPKKPQKLPIILSPDEVQH 127
Query: 113 IINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISES 172
+ L+ IL Y AGLR+SE L+ D++ + V+ V GKG KDR V +S
Sbjct: 128 FLGCVLDLKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPK 187
Query: 173 LLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYG--RKAGVELTPHQLRH 230
LL ++ Y P ++ + ++ V + K + +TPH LRH
Sbjct: 188 LLEILRDYWRM---PRPKEWLFPGDRAGHPITRDAVGQACAKAHDLSRLSKPVTPHSLRH 244
Query: 231 SFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVST 266
+FA H+LE G D+R IQ LLGH +L+TT Y +++T
Sbjct: 245 AFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIAT 280
>pir||E71332 probable integrase/recombinase (xprB) - syphilis spirochete
>gi|3322673|gb|AAC65379.1| (AE001217)
integrase/recombinase (xprB) [Treponema pallidum]
Length = 297
Score = 111 bits (276), Expect = 7e-24
Identities = 86/294 (29%), Positives = 144/294 (48%), Gaps = 35/294 (11%)
Query: 14 EEFATYLE----LEGKSRNTVRMYTYYISKF---FEEGHSPTAR----DALRFLAKLKRK 62
E+F YLE + S +TV Y ++ F + AR D F+ +L R+
Sbjct: 4 EQFTQYLEYLFRVRRLSAHTVSAYARDLNLFERWLQHAQRACARVTVSDMRLFVCELGRR 63
Query: 63 GYSTRSLNLVIQALKAYFKFEG-----LDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAA 117
G S S+N V+ ++ ++ F D+ A ++ K P LP+ + + +
Sbjct: 64 GLSAASINRVLSVVRGFYVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFYTLP 123
Query: 118 ETL------RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISE 171
RD + +LY G RVSE+ L ++DV+ +VRG KG ++R V I+
Sbjct: 124 SRTDILWQERDAALFAMLYSTGCRVSEIAALSLKDVHPHLSSAIVRG-KGDRERTVFIAP 182
Query: 172 SLLSEIKRYLESRNDD-------SPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV--E 222
+ + Y+++R +P LFV + + LS + + LV +Y A
Sbjct: 183 FAQNFLHVYMQARAQRCARYASCTPALFVNQRGR---SLSVRGIQYLVSRYVLLAQDVHA 239
Query: 223 LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
L+PH RHSFA+ ++ RG D+R+ QELLGH+++STTQ Y V+++ L++ +A
Sbjct: 240 LSPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQLQDLYHRA 293
>pir||I40587 site-specific recombinase (Tn5401) - Bacillus thuringiensis
>gi|520404|gb|AAA64588.1| (U03554) site-specific
recombinase [Bacillus thuringiensis]
Length = 306
Score = 108 bits (268), Expect = 6e-23
Identities = 86/291 (29%), Positives = 147/291 (49%), Gaps = 31/291 (10%)
Query: 13 IEEFATYLELEGKSRN-TVRMYTYYISKF---FEEGHSPTARDAL--------RFLAKLK 60
I +F + L EG T++ YT + F FE A D L R +A+ +
Sbjct: 15 ISDFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARYR 74
Query: 61 RKGYSTR-----SLNLVIQALKAYF---KFEGL--DSEAEKLKTPKMPKTLPKSLTEEEV 110
TR ++N I ++K YF K +GL + ++ +K KT PK ++++E
Sbjct: 75 GHMQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKEE 134
Query: 111 RRIINAAE---TLRDRLILLLLYGAGLRVSELCNLRVEDVNFEY--GVIVVRGGKGGKDR 165
+++A E TLRDR +++ + GLR E+C++++EDV G +VVR GK K R
Sbjct: 135 AALMHAVEKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGKRNKQR 194
Query: 166 VVPISESLLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE-LT 224
VP++ + ++ ++ YLF K + +L + + +++KY R A +E +
Sbjct: 195 EVPLNSTARCALEEHIRLSEISQSYLFPSSKTGK--RLQERAIRHILQKYIRLAKLEGFS 252
Query: 225 PHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKK 275
H LRH F M ER + + +++GH NL+TT IY + + + L+ V+K
Sbjct: 253 AHDLRHRFGYVMAER-TPLHRLAQIMGHDNLNTTMIYVRATQEDLQGEVEK 302
>sp|P55429|Y4EF_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4EF >gi|2182375|gb|AAB91651.1|
(AE000071) Y4eF [Rhizobium sp. NGR234]
Length = 251
Score = 106 bits (263), Expect = 2e-22
Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 19/209 (9%)
Query: 68 SLNLVIQALKAYFK--FEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLI 125
S+++ + AL+ +F E + E L PK P+ LP L+ +EV+ + ++ I
Sbjct: 24 SIHIALSALRFFFNVTLERDWAPEEVLPLPKKPQKLPIILSPDEVQHFLGCVADVKHHAI 83
Query: 126 LLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRN 185
L Y AGLR+SE L+ D++ + V+ V GKG KDR V +S LL ++ Y
Sbjct: 84 LTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKGQKDRYVMLSPKLLEILRDYWRMWR 143
Query: 186 DDSPYLF--------VEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHML 237
++ +LF + + + P + RL K +TPH LRH+F H+L
Sbjct: 144 PEA-WLFPGDRAGHPITRYAVGQACVKPHDLSRLSK--------PVTPHSLRHAFVVHLL 194
Query: 238 ERGIDIRIIQELLGHSNLSTTQIYTKVST 266
E G D+R IQ LLGH +L+TT Y +++T
Sbjct: 195 EAGADVRTIQPLLGHRSLATTAHYLRIAT 223
>pir||G72672 probable integrase/recombinase xerD APE0805 - Aeropyrum pernix
(strain K1) >gi|5104468|dbj|BAA79783.1| (AP000060) 362aa
long hypothetical integrase/recombinase xerD [Aeropyrum
pernix]
Length = 362
Score = 104 bits (258), Expect = 9e-22
Identities = 81/267 (30%), Positives = 134/267 (49%), Gaps = 29/267 (10%)
Query: 10 DDTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDA--------LRFLAKLKR 61
+D F T LE G S T+++Y + F + DA + +++ R
Sbjct: 23 EDAARLFLTILESTGWSSKTIKVYRAALKDFLKSYGRVRVGDASHMTYVQWMSSVSERVR 82
Query: 62 KGYSTRSLNLVIQAL-KAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETL 120
KG +R+ + + + K+ G++ + + SL+ +V +++A+ +
Sbjct: 83 KGVISRTTAHYYSIMVRRFLKWAGVEGVMRPFSRGE--RRFSGSLSWRDVEALLSASRDI 140
Query: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVV---PISESLLSEI 177
D LI+ +L GLRVSEL +LR+ DV+ GV+ V G K GK+R+V P+S LL E
Sbjct: 141 IDALIVSMLAETGLRVSELLSLRLSDVDLGRGVVRVVG-KYGKERIVFLGPLSRMLLEE- 198
Query: 178 KRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE---LTPHQLRHSFAT 234
YL S +E LS + V++ +K ++AG++ + PH LRH+FAT
Sbjct: 199 --YLASNPLPPDSRIIE--------LSYQAVYKRLKSLAKRAGLDPRKVRPHILRHTFAT 248
Query: 235 HMLERGIDIRIIQELLGHSNLSTTQIY 261
L RG+ + +Q LLGHS++ TQ+Y
Sbjct: 249 EALRRGMSLAALQRLLGHSDIKVTQLY 275
>sp|P06696|TNPA_STAAU TRANSPOSASE A (TRANSPOSON TN554) >gi|79913|pir||A24584
transposition regulatory protein tnpA - Staphylococcus
aureus transposon Tn554 >gi|581277|emb|CAA26960.1|
(X03216) tnpA protein [Staphylococcus aureus]
>gi|5360831|dbj|BAA82201.1| (D86934) transposaseA
[Staphylococcus aureus]
Length = 361
Score = 103 bits (255), Expect = 2e-21
Identities = 89/331 (26%), Positives = 152/331 (45%), Gaps = 71/331 (21%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHS----------------------PT 48
+ + +F YL+ GKS NT++ Y Y++ +E P+
Sbjct: 27 EPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVGWLRYPS 86
Query: 49 ARDALRFLAKLKRKGYSTRS--LNLVIQALK-----AYFK------------FEGLDSEA 89
A + + +K + +T + LN+V+ L FK F+G
Sbjct: 87 ASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFLHHV 146
Query: 90 EKLKTPK------MPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLR 143
K + K + K ++L +EV++II+A T RD+LIL+L+Y GLR+ E+ +LR
Sbjct: 147 NKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDACHTKRDKLILMLMYEGGLRIGEVLSLR 206
Query: 144 VE--------------DVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYL---ESRND 186
+E DVN I +R K+R + +S+ L+S YL S
Sbjct: 207 LEDIVTWDNQIHLTPRDVNVNEAYIKLR-----KERTIHVSKELMSLYTDYLIYEYSEEL 261
Query: 187 DSPYLFVEMKRKRKDK-LSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGIDIRI 245
+ Y+F+ +K K L ++V LV++ ++ G+E T H LRH+ AT ++ G D+
Sbjct: 262 EHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVAF 321
Query: 246 IQELLGHSNLSTT-QIYTKVSTKHLKEAVKK 275
+Q+ LGH+++ TT Y +S + +K K
Sbjct: 322 VQKRLGHAHVQTTLNTYVHLSDQDMKNEFNK 352
>prf||1202257C gene tnpA [Staphylococcus aureus]
Length = 361
Score = 103 bits (255), Expect = 2e-21
Identities = 89/331 (26%), Positives = 152/331 (45%), Gaps = 71/331 (21%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHS----------------------PT 48
+ + +F YL+ GKS NT++ Y Y++ +E P+
Sbjct: 27 EPVMKFIKYLDNTGKSPNTIKAYCYHLKLLYEFMEQRGVILNDINFELLADFVGWLRYPS 86
Query: 49 ARDALRFLAKLKRKGYSTRS--LNLVIQALK-----AYFK------------FEGLDSEA 89
A + + +K + +T + LN+V+ L FK F+G
Sbjct: 87 ASNVIDLQSKKAIREETTVNTILNVVMSFLDYLSRLGEFKSIDVFKQAKGRNFKGFLHHV 146
Query: 90 EKLKTPK------MPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLR 143
K + K + K ++L +EV++II+A T RD+LIL+L+Y GLR+ E+ +LR
Sbjct: 147 NKGRYQKNVLKLRVKKKQIRTLRSKEVKQIIDACHTKRDKLILMLMYEGGLRIGEVLSLR 206
Query: 144 VE--------------DVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYL---ESRND 186
+E DVN I +R K+R + +S+ L+S YL S
Sbjct: 207 LEDIVTWDNQIHLTPRDVNVNEAYIKLR-----KERTIHVSKELMSLYTDYLIYEYSEEL 261
Query: 187 DSPYLFVEMKRKRKDK-LSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGIDIRI 245
+ Y+F+ +K K L ++V LV++ ++ G+E T H LRH+ AT ++ G D+
Sbjct: 262 EHDYVFISLKEGYFGKPLKYQSVLDLVRRIVKRTGIEFTSHMLRHTHATQLIREGWDVAF 321
Query: 246 IQELLGHSNLSTT-QIYTKVSTKHLKEAVKK 275
+Q+ LGH+++ TT Y +S + +K K
Sbjct: 322 VQKRLGHAHVQTTLNTYVHLSDQDMKNEFNK 352
>gi|10956075 DNA invertase homolog [Chlorobium limicola]
>gi|1688244|gb|AAB36935.1| (U77780) DNA invertase
homolog [Chlorobium limicola]
Length = 182
Score = 102 bits (252), Expect = 5e-21
Identities = 64/166 (38%), Positives = 87/166 (51%), Gaps = 6/166 (3%)
Query: 103 KSLTEEEVRRIINAA----ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRG 158
K L EV R+I AA + RDR +LLL++ GLRVSE C L++ V+ E V+ V
Sbjct: 5 KHLVSAEVDRLIEAAGRSRNSARDRCLLLLMFRHGLRVSEACGLQLSQVDAESRVLHVSR 64
Query: 159 GKGGKDRVVPISESLLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRK 218
K G P+ L I+ +L R P R+ LS KT W ++KYG
Sbjct: 65 LKKGLSTTHPLRTDELKAIRAWLAIRAKMKPDTDDFFLSNRRGPLSRKTAWLAIRKYGEL 124
Query: 219 AGVELT--PHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYT 262
AG+ L PH LRH+ + ++G D R+IQ+ LGH N+ T IYT
Sbjct: 125 AGLPLPAHPHMLRHACGFALADQGADTRLIQDYLGHRNIQHTVIYT 170
>gb|AAB54012.1| (U95315) transposase homolog [Mycobacterium gordonae]
Length = 369
Score = 102 bits (251), Expect = 6e-21
Identities = 63/193 (32%), Positives = 103/193 (52%), Gaps = 12/193 (6%)
Query: 96 KMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIV 155
K PK LP+ L EV+ I++ LRDRL+ +LY G+R+ E LR D+ +
Sbjct: 167 KTPKKLPRVLAPNEVQAILDGCGRLRDRLLFAVLYDTGMRIGEALGLRHNDIAAAENEVT 226
Query: 156 VRG--------GKGGKDRVVPISESLLSEIKR-YLESRND-DSPYLFVEM-KRKRKDKLS 204
VR K DR +P+S +L+ + S D DS Y+FV + R + L+
Sbjct: 227 VRRRDNANGARAKSQTDRTIPVSSALIRLWPTTFTASYGDLDSDYVFVNLWGRPQGYPLT 286
Query: 205 PKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGIDIRIIQELLGHSNL-STTQIYTK 263
V+ LV++ R+ G++ PH LRH+ AT +L G+ I ++ LLGH+++ +TT Y
Sbjct: 287 YGAVYDLVRRLRRRTGIDFDPHWLRHTAATRLLRDGVSIEVVAHLLGHAHVATTTTTYGH 346
Query: 264 VSTKHLKEAVKKA 276
+S + + +++A
Sbjct: 347 LSVEDARRVMERA 359
>sp|P55639|Y4RF_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4RF >gi|2182603|gb|AAB92472.1|
(AE000093) Y4rF [Rhizobium sp. NGR234]
Length = 425
Score = 101 bits (249), Expect = 1e-20
Identities = 69/182 (37%), Positives = 100/182 (54%), Gaps = 11/182 (6%)
Query: 101 LPKSLTEEEVRRIINAAET-----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIV 155
LP L +VRR I+A +RDR +LLLL G+R EL +R++D+++ G +
Sbjct: 234 LPPRLAWGDVRRAIDAIGATTPVAIRDRAVLLLLATTGIRNGELRAIRLQDIDWRTGEVF 293
Query: 156 VRGGKGGKDRVVPISESLLSEIKRY-LESR-NDDSPYLFVEMKRKRKDKLSPKTVWRLVK 213
+R KG +DRVVP+ E + + Y L +R DSPYLF+ S V R+V+
Sbjct: 294 IRRTKGKRDRVVPLLEETGAALVDYILRARPKVDSPYLFLSFTPPVGAFKSAAPVSRIVR 353
Query: 214 KYGRKAGVEL----TPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHL 269
K R GVEL H LRHS AT ++ + I + +LLGH +++TT +Y KV+ L
Sbjct: 354 KRLRHGGVELGRVAGAHLLRHSLATQLVGQRRPINEVADLLGHRSINTTALYVKVAASQL 413
Query: 270 KE 271
E
Sbjct: 414 AE 415
>emb|CAB61438.1| (Z32686) MrpI [Proteus mirabilis]
Length = 188
Score = 97.9 bits (240), Expect = 1e-19
Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 13/175 (7%)
Query: 103 KSLTEEEVRRIINAAET----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRG 158
K LT EV I+ A+ RD + L+ + G RVSELCNL + D++ E ++ VR
Sbjct: 5 KFLTRFEVNAILKQAKEGRYPERDYCMFLMCFLHGFRVSELCNLTLSDIDLESRILYVRR 64
Query: 159 GKGGKDRVVPISESLLSEIKRYLESRND----DSPYLFVEMKRKRKDKLSPKTVWRLVKK 214
KGG PI + + +L+SR + DS ++F+ K +S + V+ L+++
Sbjct: 65 LKGGLSTTQPIIDEEYEALCNWLKSRENWRESDSEWVFLSQK---TGPISRQQVYGLLRR 121
Query: 215 YGRKAGVELT--PHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTK 267
G+KA V ++ PH LRH+ + + G D R+IQ+ LGH N+S T IYT ++K
Sbjct: 122 LGKKANVSISPHPHMLRHACGYALADLGRDTRLIQDYLGHRNISHTVIYTASNSK 176
>pir||C82878 integrase-recombinase protein UU529 [imported] - Ureaplasma
urealyticum >gi|6899533|gb|AAF30942.1|AE002152_1
(AE002152) integrase-recombinase protein [Ureaplasma
urealyticum]
Length = 251
Score = 94.8 bits (232), Expect = 1e-18
Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 30/261 (11%)
Query: 13 IEEFATYLE-LEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNL 71
+++F YL+ ++G S T+ +Y Y+ + D L+ + K + T+ +
Sbjct: 1 MKKFINYLKNVKGYSDGTIAIYQKYVKVLIDNN-----LDYLKAIKKYEHNANVTK--RV 53
Query: 72 VIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAET-----LRDRLIL 126
V+ A KAY KF +A + PK + + LT + +IIN + LIL
Sbjct: 54 VLSAFKAYLKFIN-HKDAILIVMPKKEIKVKEFLTWDNFLKIINNINQATFLGFQKYLIL 112
Query: 127 LLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRND 186
+L+ G+R EL L ++D+ Y + GKG K+R V +S L + IK+Y+
Sbjct: 113 RILFETGIRSCELLKLEIKDI---YENKLKIHGKGKKERFVYLSNDLQNNIKKYIG---- 165
Query: 187 DSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGIDIRII 246
++K K S K +++ V + K + LTPH LR SFA H + GI+I +
Sbjct: 166 -------QIKTKYLFNFSYKNLYQKVTRI--KTNIRLTPHILRRSFANHCINNGINIYDL 216
Query: 247 QELLGHSNLSTTQIYTKVSTK 267
++GH+N+++T +Y +K
Sbjct: 217 SLVMGHNNINSTSLYLNKESK 237
>sp|P55636|Y4RC_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4RC >gi|2182600|gb|AAB92469.1|
(AE000093) Y4rC [Rhizobium sp. NGR234]
Length = 332
Score = 94.4 bits (231), Expect = 1e-18
Identities = 77/255 (30%), Positives = 128/255 (50%), Gaps = 30/255 (11%)
Query: 41 FEEGHSPTARDALRFLAKLK-RKGYSTRSLNLVIQALKAYFKFEGLDSEAEK-------- 91
FEE +P + FL L+ R+G S RS NL + A+ ++F++ +
Sbjct: 57 FEEIDAPLI---VAFLDDLENRQGISVRSRNLRLTAIHSFFRYAAFEIPEHSAQIQRVLA 113
Query: 92 LKTPKMPKTLPKSLTEEEVRRIINAAETL-----RDRLILLLLYGAGLRVSELCNLRVED 146
+ + + +TL LT EV ++ A + RD LL+ GLR+SE+ L+ +D
Sbjct: 114 IPSKRFTRTLVNFLTRPEVDALLAAPDRSTWSGRRDHAFLLVAVQTGLRLSEITGLKRDD 173
Query: 147 VNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYL-ESRNDDSPYLFVEMKRKRKDKLSP 205
+ F G + GKG K+R P ++S + ++ +L E + D LF R ++LS
Sbjct: 174 LFFGTGAHLRVIGKGRKERCTPFAKSTTAVLRNWLKEPQRGDQGILFPSA---RGERLSV 230
Query: 206 KTVWRLVKKYGRKA--------GVELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLST 257
V ++ K+ + A G +T H+LRH+ A +L+ G+D +I LGH ++ T
Sbjct: 231 HGVQYMLNKHRQIASAMSPSLEGKRVTVHRLRHTMAMDLLQAGVDRAVIALWLGHESVET 290
Query: 258 TQIYTKVSTKHLKEA 272
TQIY + +T +KEA
Sbjct: 291 TQIYLE-ATLAMKEA 304
>gi|10956379 pXO1-132 [Bacillus anthracis] >gi|7474242|pir||D59107 hypothetical
protein pXO1-132 - Bacillus anthracis virulence plasmid
pXO1 >gi|4894348|gb|AAD32436.1|AAD32436 (AF065404)
pXO1-132 [Bacillus anthracis]
Length = 361
Score = 94.0 bits (230), Expect = 2e-18
Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 48/272 (17%)
Query: 51 DALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPK-SLTEEE 109
+A F L+ +G TR++N ALK+ FK+ ++E E+ + + K L +E+
Sbjct: 84 EARTFQRYLQGEGIETRAINRTFSALKSLFKYLAQNTENEQGENYISRNVMDKIELHKEK 143
Query: 110 VRRIINAAETL----------------------------------------RDRLILLLL 129
V A + RD I+ L+
Sbjct: 144 VDAAARADDVANMIFNEKDDVAFLQFLANDYGEMLKDISPKKYSFFQRDKERDIAIISLI 203
Query: 130 YGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRND--- 186
G GLRVSE+ +L + +NF G + V KG K V + S L +++ Y++ R
Sbjct: 204 LGTGLRVSEVASLTISSINFRQGKVKVTR-KGNKRSSVLATRSCLDDVQEYIKVRPSKYN 262
Query: 187 ---DSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGIDI 243
D LFV + + +L+ + + +L KY + +PH+LRH++AT+ + D+
Sbjct: 263 CPQDEDLLFVTNYKGKYTQLTVRAIQKLCDKYSSAFDEKRSPHKLRHTYATNHYKENKDL 322
Query: 244 RIIQELLGHSNLSTTQIYTKVSTKHLKEAVKK 275
++++ LGH+++ T IYT ++ + +EAV +
Sbjct: 323 VLLRDQLGHTSVEVTSIYTNINNEKKREAVDR 354
>pir||G81359 DNA recombinase Cj0863c [imported] - Campylobacter jejuni (strain
NCTC 11168) >gi|6968309|emb|CAB73128.1| (AL139076) DNA
recombinase [Campylobacter jejuni]
Length = 354
Score = 92.8 bits (227), Expect = 4e-18
Identities = 60/189 (31%), Positives = 110/189 (57%), Gaps = 15/189 (7%)
Query: 101 LPKSLTEEEVRRIINAAE-------TLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGV 153
LP+ +++EE+++ ++A E T+R++LI+ ++ G+RVSE N+++ D++ E +
Sbjct: 164 LPEFMSKEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDISEENDL 223
Query: 154 IVVR-GGKGGKDRVVPISESLLSEIKRYLESRN-DDSPYLFVEMKRKRKDKLSPKTVWRL 211
++R KG K RVV I + L+ ++ + + LFV K+ L+ V R+
Sbjct: 224 YIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYISKDALLFVN---KKGTPLTQSYVSRI 280
Query: 212 VKKYGRKAGVELTP---HQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKH 268
V++ +AG+ H LRH+FAT + ++ D+ ++QE LGH++L+T++IYT
Sbjct: 281 VEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYTHFDNDK 340
Query: 269 LKEAVKKAK 277
LK A + AK
Sbjct: 341 LKLAAQVAK 349
>pir||S10927 integrase-like protein 2M - Mycobacterium fortuitum transposon
Tn610 >gi|44286|emb|CAA37686.1| (X53635) integrase
[Mycobacterium fortuitum] >gi|226924|prf||1611403A sul3
assocd ORF 2M [Mycobacterium fortuitum]
Length = 303
Score = 89.7 bits (219), Expect = 3e-17
Identities = 86/288 (29%), Positives = 129/288 (43%), Gaps = 62/288 (21%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE---EGHSPTARDA-----LRFLAKLKRK 62
D + E YL S T + Y +++ F H T + L +LA ++
Sbjct: 18 DQLRERIRYLHY---SLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKV 74
Query: 63 GYSTRSLNLVIQALKAYFKFEG--LDSEA---EKLKTPKMPKTLPKSLTEEEVRRIINAA 117
ST QAL A F G L ++ +++ P+ + LP LT +EV RI+
Sbjct: 75 SVSTHR-----QALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFL 129
Query: 118 ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEI 177
E RL LLYG G+R+SE LRV+D++F++G I+VR GKG KDR + + ESL +
Sbjct: 130 EG-EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188
Query: 178 KRYL------------ESRNDDS----------------PYLFVEMKRK----------R 199
+ L E R+ + P+ +V + R
Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248
Query: 200 KDKLSPKTVWRLVKKYGRKAGV--ELTPHQLRHSFATHMLERGIDIRI 245
+ + +T R K+ +AG+ TPH LRHSFAT +L G DIR+
Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRL 296
>gi|10957535 integrase/recombinase XerD, putative [Deinococcus radiodurans]
>gi|7473528|pir||G75636 probable integrase/recombinase
XerD - Deinococcus radiodurans (strain R1)
>gi|6460964|gb|AAF12667.1|AE001827_5 (AE001827)
integrase/recombinase XerD, putative [Deinococcus
radiodurans]
Length = 236
Score = 86.2 bits (210), Expect = 4e-16
Identities = 62/195 (31%), Positives = 100/195 (50%), Gaps = 10/195 (5%)
Query: 78 AYFK--FEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETLR---DRLILLLLYGA 132
AY K F L +E E ++ P + LP TEE+VR A R D +++
Sbjct: 28 AYLKEVFRHLRAELE-VEVPGPSRRLPWVPTEEQVRAFYEAVWRTRRTADLVLIKTFLYT 86
Query: 133 GLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRNDDSPYLF 192
G+RVSEL +R+ DV+ + I V GKG KDRVVP + ++ R
Sbjct: 87 GVRVSELVMMRLADVDLDACQIRVNLGKGSKDRVVPFPAPFKETLALHIGQRRQQGGIYL 146
Query: 193 VEMKRKRKDKLSPKTVWRLVKKYGRKAGVE--LTPHQLRHSFATHMLERGIDIRIIQELL 250
E KR + S + V R+ ++Y A ++ L+PH+LRH T + ++G+D +IQ
Sbjct: 147 FESSWKR--RYSXRGVRRMFERYTALAEIDRSLSPHKLRHFLLTWLKKQGLDDALIQPYS 204
Query: 251 GHSNLSTTQIYTKVS 265
GH++ + +IY++++
Sbjct: 205 GHASRQSLEIYSRLA 219
>sp|P04741|FIME_ECOLI TYPE 1 FIMBRIAE REGULATORY PROTEIN FIME >gi|73073|pir||RGECFE type
1 fimbriae regulatory protein fimE - Escherichia coli
>gi|537154|gb|AAA97209.1| (U14003) recombinase involved
in phase variation [Escherichia coli]
>gi|581086|emb|CAA27561.1| (X03923) fimE [Escherichia
coli] >gi|1790768|gb|AAC77269.1| (AE000502) recombinase
involved in phase variation; regulator for fimA
[Escherichia coli K12]
Length = 198
Score = 84.7 bits (206), Expect = 1e-15
Identities = 55/169 (32%), Positives = 90/169 (52%), Gaps = 14/169 (8%)
Query: 105 LTEEEVRRIINA----AETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGK 160
LT +EV+ ++ A A RD ++LL Y G+R+SEL +L +D++ G I +R K
Sbjct: 7 LTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLK 66
Query: 161 GGKDRVVPISESLLSEIKRYLESRN-----DDSPYLFVEMKRKRKDKLSPKTVWRLVKKY 215
G V P+ ++R+ + R D + +F+ +R +LS + +R+++
Sbjct: 67 NGFSTVHPLRFDEREAVERWTQERANWKGADRTDAIFIS---RRGSRLSRQQAYRIIRDA 123
Query: 216 GRKAGV--ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYT 262
G +AG + PH LRH+ + ERG D R+IQ+ LGH N+ T YT
Sbjct: 124 GIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYT 172
>gi|10956538 integrase/recombinase [Lactobacillus delbrueckii]
>gi|971481|emb|CAA90742.1| (Z50864)
integrase/recombinase [Lactobacillus delbrueckii]
Length = 333
Score = 84.7 bits (206), Expect = 1e-15
Identities = 73/268 (27%), Positives = 133/268 (49%), Gaps = 33/268 (12%)
Query: 25 KSRNTVRMYTYYISKFFE----EGHSPTARDALR-FLAKLKRKGYSTRSLNLVIQALKAY 79
KS++T++ YT + F + G T+ ++ ++ L+ +G +++L I +K +
Sbjct: 47 KSQSTIKTYTRCLKSFAQWLAMNGIQQTSESTIKLYMQWLENQGRQPSTIHLYIVVVKRW 106
Query: 80 FKFEGLDSE------AEKLKTPKMPKTLPKSLTE-EEVRRIINAAETL-----RDRLILL 127
FK+ L+++ A+ ++ ++ K PKS + +V++I++ + R+ +L+
Sbjct: 107 FKW--LEAKRIYPDVAKNVENVRVRKDSPKSFFQAHQVKKILDTVDQTSEKGKRNYALLV 164
Query: 128 LLYGAGLRVSELCNLRVEDVNFEYGVIVVR-GGKGGK--DRVVPISESLLSEIKRYLESR 184
LL+ GLR E RV+++ +V+ GKG K D VP+ + + + YL +R
Sbjct: 165 LLFTCGLRTIEASRARVDNIRLNGSQLVLYIHGKGHKTDDDYVPLPDKTYAVLCEYLSTR 224
Query: 185 NDD-------SPYLFVEMKRKRKDK-LSPKTVWRLVKKYGRKAGVEL---TPHQLRHSFA 233
LF + KD+ +S + ++ K RKAG + T H RH+ A
Sbjct: 225 GIKPKDFETCKQPLFTSTSNRSKDQSISTNAISKICKSCFRKAGYDQHDWTAHSTRHTAA 284
Query: 234 THMLERGIDIRIIQELLGHSNLSTTQIY 261
T L G D+R Q LL HS+ +TT+IY
Sbjct: 285 TLALTNGADLRETQMLLRHSSPTTTEIY 312
>gi|10954856 Hypothetical gene [Agrobacterium tumefaciens]
>gi|6498209|dbj|BAA87661.1| (AB016260) Hypothetical gene
[Agrobacterium tumefaciens]
Length = 331
Score = 84.7 bits (206), Expect = 1e-15
Identities = 82/306 (26%), Positives = 134/306 (42%), Gaps = 46/306 (15%)
Query: 13 IEEFATY--LELEGKSRNTVRMYTYYISKFFEEGHSPTARD-------------ALRFLA 57
IE F T + S +TV Y F H T + + FL
Sbjct: 9 IERFFTQRLMRQRNVSTHTVASYRDTFKLFLRFAHRKTGKQPSSLMLEDFDAELVIAFLD 68
Query: 58 KLKRKGYS-TRSLNLVIQALKAYFKFEGLDSEAEKLKTPKM--------PKTLPKSLTEE 108
L + S T + NL + A++A+F+F + + ++ + + L +
Sbjct: 69 DLTAERRSGTATYNLRLTAIRAFFRFLAFEEPTVSHQIQRVLAIPGKIGTRREVQFLVRD 128
Query: 109 EVRRIINAAETL-----RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGK 163
E++ ++ A + RD +LL G+R+SEL L V + G + GKG K
Sbjct: 129 EIKALLAAPDRRLWIGRRDYCLLLTAIQTGMRLSELVGLDRGAVTLDTGAHIRCFGKGRK 188
Query: 164 DRVVPISESLLSEIKRYL-ESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVE 222
+RV P+++ L S +K++L E R S LF + R +SP V L+ K+ ++A +
Sbjct: 189 ERVTPLTKILSSVLKQWLDEPRLGQSDILFPTVHGSR---MSPDAVQYLLAKHVKQAAQQ 245
Query: 223 --------LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVK 274
++PH LRHS A +L+ G+D +I LGH + +TQ Y H A+K
Sbjct: 246 YPSLRAKRISPHVLRHSAAMELLDAGVDSTVISLWLGHESTRSTQAYL-----HAHLAIK 300
Query: 275 KAKLVE 280
A L +
Sbjct: 301 GAALAK 306
>pir||S31463 probable integrase/recombinase [similarity] - Bacteroides sp.
transposon Tn4551 >gi|154970|gb|AAA27458.1| (M72415)
ORF-2 with homology to Tn21 tnpI gene; putative
[Transposon Tn4551]
Length = 282
Score = 83.1 bits (202), Expect = 3e-15
Identities = 64/222 (28%), Positives = 112/222 (49%), Gaps = 15/222 (6%)
Query: 10 DDTIEEFATYLELEGKSRNTVRMYTYYISKFFE----EGHSPTARDALRF----LAKLKR 61
D I EF L L+ S N++ Y F + + P D L L K++R
Sbjct: 38 DRLILEFERKLVLQRYSANSIANYKSSARSFLDLAKRKFSHPAEIDELAVEKYVLWKIER 97
Query: 62 KGYSTRSLNLVIQALKAYFK-FEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETL 120
+ +++ ++ ++K G + + + L + LP L +EV+RII+ E +
Sbjct: 98 HRIGSSHQRMIVASIDKFYKSIYGRELKIKHLYPSRRTFALPNCLNIDEVKRIIDGTENI 157
Query: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKR- 179
+ R ++ +LYG+GLR+SEL NL + D++ +I + KG KDRVV + ES+L++++
Sbjct: 158 KHRCMIKMLYGSGLRLSELINLEIADIDSARMLIRIVKSKGNKDRVVTLPESILTDLRTC 217
Query: 180 YLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV 221
Y+ + D YLF + + S K+V +VK +AG+
Sbjct: 218 YILHKPD--VYLF---EGQWGGPYSAKSVQMVVKNAASRAGI 254
>sp|Q57813|Y367_METJA PROBABLE INTEGRASE/RECOMBINASE PROTEIN MJ0367
>gi|2129081|pir||G64345 integrase homolog -
Methanococcus jannaschii >gi|1591073|gb|AAB98346.1|
(U67489) integrase/recombinase [Methanococcus
jannaschii]
Length = 330
Score = 82.7 bits (201), Expect = 4e-15
Identities = 52/171 (30%), Positives = 89/171 (51%), Gaps = 12/171 (7%)
Query: 120 LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKR 179
+RD LI+ LL+ G RVSE+ NL+ +D + + G+ +R K ++R V S L ++
Sbjct: 162 IRDALIIRLLWDTGCRVSEVLNLKYKDCDLDNGIFKIRNTKTHEERTVVCSSDTLELLRN 221
Query: 180 YLE--SRNDDSPYLFVEMK--RKRKDKLSP---KTVWRLVKKYGRKAGVELTPHQLRHSF 232
Y++ R YLF + R RK+ +S K V L ++ + H +RH
Sbjct: 222 YVQFNVRQGSDDYLFQNSQGGRVRKEWISEVFRKAVNELKEEGKIPKNRRIVIHSIRHGR 281
Query: 233 ATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLVESII 283
A +L +G+ I I++E LGH +++TT IY H KE + + ++ ++
Sbjct: 282 AVDLLNKGVPIDIVKEYLGHKSMNTTLIYA-----HSKERAESLEFIKKLL 327
>pir||S53064 FimE protein - Escherichia coli >gi|732682|emb|CAA85726.1| (Z37500)
FimE protein [Escherichia coli]
>gi|1816486|emb|CAA71840.1| (Y10902) FimE recombinase
[Escherichia coli]
Length = 184
Score = 81.9 bits (199), Expect = 8e-15
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 110 VRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPI 169
++ + A RD ++LL Y G+R+SEL +L +D++ G I +R K G V P+
Sbjct: 2 MQAVCYGATGARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPL 61
Query: 170 SESLLSEIKRYLESRN-----DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGV--E 222
++R+ + R D + +F+ +R +LS + +R+++ G +AG +
Sbjct: 62 RFDEREAVERWTQERANWKGADRTDAIFIS---RRGSRLSRQQAYRIIRDAGIEAGTVTQ 118
Query: 223 LTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYT 262
PH LRH+ + ERG D R+IQ+ LGH N+ T YT
Sbjct: 119 THPHMLRHACGYELAERGADTRLIQDYLGHRNIRHTVRYT 158
>dbj|BAA78093.1| (AB027715) aminoglycoside adenyltransferase [Corynebacterium
glutamicum]
Length = 309
Score = 81.1 bits (197), Expect = 1e-14
Identities = 60/188 (31%), Positives = 91/188 (47%), Gaps = 41/188 (21%)
Query: 90 EKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF 149
+++ P+ + LP LT +EV RI+ E RL LLYG G+R+SE LRV+D++F
Sbjct: 102 QEIGRPRPSRRLPVVLTPDEVVRILGFLEG-EHRLFAQLLYGTGMRISEGLQLRVKDLDF 160
Query: 150 EYGVIVVRGGKGGKDRVVPISESLLSEIKRYL------------ESRNDDS--------- 188
++G I+VR GKG KDR + + ESL ++ L E R+ +
Sbjct: 161 DHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKY 220
Query: 189 -------PYLFVEMKRK----------RKDKLSPKTVWRLVKKYGRKAGV--ELTPHQLR 229
P+ +V + R+ + +T R K+ +AG+ TPH LR
Sbjct: 221 PRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLR 280
Query: 230 HSFATHML 237
HSFAT +L
Sbjct: 281 HSFATALL 288
>pir||S53063 FimB protein - Escherichia coli >gi|732681|emb|CAA85725.1| (Z37500)
FimB protein [Escherichia coli]
Length = 200
Score = 81.1 bits (197), Expect = 1e-14
Identities = 52/168 (30%), Positives = 83/168 (48%), Gaps = 13/168 (7%)
Query: 105 LTEEEVRRIINAAET----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGK 160
LT E+ ++ AA T R+ + LL + G R SE+C LR+ D++ + I + K
Sbjct: 13 LTHSEIESLLKAANTGPHAARNYCLTLLCFIHGFRASEICRLRISDIDLKAKCIYIHRLK 72
Query: 161 GGKDRVVPISESLLSEIKRYLESRND----DSPYLFVEMKRKRKDKLSPKTVWRLVKKYG 216
G P+ + +K +L R +S ++F+ K + LS + + ++ G
Sbjct: 73 KGFSTTHPLLNKEIQALKNWLSIRTSYPHAESEWVFLSRKG---NPLSRQQFYHIISTSG 129
Query: 217 RKAGV--ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYT 262
AG+ E+ PH LRHS + GID R+IQ+ LGH N+ T YT
Sbjct: 130 GNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYT 177
>emb|CAA71839.1| (Y10902) FimB recombinase [Escherichia coli]
Length = 200
Score = 81.1 bits (197), Expect = 1e-14
Identities = 52/168 (30%), Positives = 83/168 (48%), Gaps = 13/168 (7%)
Query: 105 LTEEEVRRIINAAET----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGK 160
LT E+ ++ AA T R+ + LL + G R SE+C LR+ D++ + I + K
Sbjct: 13 LTHSEIESLLKAANTGPHAARNYCLTLLCFIHGFRASEICRLRISDIDLKAKCIYIHRLK 72
Query: 161 GGKDRVVPISESLLSEIKRYLESRND----DSPYLFVEMKRKRKDKLSPKTVWRLVKKYG 216
G P+ + +K +L R +S ++F+ K + LS + + ++ G
Sbjct: 73 KGFSTTHPLLNKEIQALKNWLSIRTSYPHAESKWVFLSRKG---NPLSRQQFYHIISTSG 129
Query: 217 RKAGV--ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYT 262
AG+ E+ PH LRHS + GID R+IQ+ LGH N+ T YT
Sbjct: 130 GNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYT 177
>sp|P04742|FIMB_ECOLI TYPE 1 FIMBRIAE REGULATORY PROTEIN FIMB >gi|1361243|pir||S56537
recombinase fimB (involved in phase variation) -
Escherichia coli >gi|7429089|pir||RGECFF type 1 fimbriae
regulatory protein fimB - Escherichia coli
>gi|537153|gb|AAA97208.1| (U14003) recombinase involved
in phase variation [Escherichia coli]
>gi|1790767|gb|AAC77268.1| (AE000502) recombinase
involved in phase variation; regulator for fimA
[Escherichia coli K12]
Length = 200
Score = 80.8 bits (196), Expect = 2e-14
Identities = 52/168 (30%), Positives = 83/168 (48%), Gaps = 13/168 (7%)
Query: 105 LTEEEVRRIINAAET----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGK 160
LT E+ ++ AA T R+ + LL + G R SE+C LR+ D++ + I + K
Sbjct: 13 LTHSEIESLLKAANTGPHAARNYCLTLLCFIHGFRASEICRLRISDIDLKAKCIYIHRLK 72
Query: 161 GGKDRVVPISESLLSEIKRYLESRND----DSPYLFVEMKRKRKDKLSPKTVWRLVKKYG 216
G P+ + +K +L R +S ++F+ K + LS + + ++ G
Sbjct: 73 KGFSTTHPLLNKEVQALKNWLSIRTSYPHAESEWVFLSRKG---NPLSRQQFYHIISTSG 129
Query: 217 RKAGV--ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYT 262
AG+ E+ PH LRHS + GID R+IQ+ LGH N+ T YT
Sbjct: 130 GNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYT 177
>emb|CAA27560.1| (X03923) fimB [Escherichia coli]
Length = 200
Score = 80.4 bits (195), Expect = 2e-14
Identities = 52/168 (30%), Positives = 83/168 (48%), Gaps = 13/168 (7%)
Query: 105 LTEEEVRRIINAAET----LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGK 160
LT E+ ++ AA T R+ + LL + G R SE+C LR+ D++ + I + K
Sbjct: 13 LTHSEIESLLKAANTGPHAARNYCLTLLCFIHGFRASEICRLRISDIDLKAKCIYIHRLK 72
Query: 161 GGKDRVVPISESLLSEIKRYLESRND----DSPYLFVEMKRKRKDKLSPKTVWRLVKKYG 216
G P+ + +K +L R +S ++F+ K + LS + + ++ G
Sbjct: 73 KGFSTTHPLLNKDVQALKNWLSIRTSYPHAESEWVFLSRKG---NPLSRQQFYHIISTSG 129
Query: 217 RKAGV--ELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYT 262
AG+ E+ PH LRHS + GID R+IQ+ LGH N+ T YT
Sbjct: 130 GNAGLSLEIHPHMLRHSCGFALANMGIDTRLIQDYLGHRNIRHTVWYT 177
>sp|P55459|Y4GC_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4GC >gi|2182405|gb|AAB91677.1|
(AE000074) Y4gC [Rhizobium sp. NGR234]
Length = 192
Score = 80.4 bits (195), Expect = 2e-14
Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 19/184 (10%)
Query: 101 LPKSLTEEEVRRIINAAET------LRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVI 154
+P L +++ ++ +A LRD IL LL GLR E+ N+R+ED+++ I
Sbjct: 1 MPSILERDQIAAVLVSASRDKTPAGLRDHAILQLLATYGLRSGEIRNMRIEDIDWRTETI 60
Query: 155 VVRGGKGGKDRVVPISESLLSEIKRYLESRND--DSPYLFVEMKR--KRKDKLSPKTVWR 210
VR K ++P++E + I YL S D+ LFV + ++ DKL +
Sbjct: 61 RVRHSKTQAYTLLPLTEPVGEAILVYLRSGRPATDARELFVRTRAPYRKLDKL-----YS 115
Query: 211 LVKKYGRKAGVELT----PHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVST 266
+V++ R AGV+ PH RH+ AT +L + +II ELLGH ++++T Y K++T
Sbjct: 116 MVRRRLRDAGVKPRGKRGPHIFRHARATELLRAAVPQKIIGELLGHRSIASTAPYLKLAT 175
Query: 267 KHLK 270
+ L+
Sbjct: 176 EDLR 179
>gb|AAF71178.1|AF179594_1 (AF179594) site-specific recombinase IntI4 [Vibrio cholerae]
Length = 230
Score = 79.6 bits (193), Expect = 4e-14
Identities = 51/179 (28%), Positives = 97/179 (53%), Gaps = 25/179 (13%)
Query: 19 YLELEGKSRNTVRMYTYYISKF--FEEGHSPTA---RDALRFLAKLKRKG-YSTRSLNLV 72
+++ ++ T+ Y ++I+++ F P+ ++ FL L +G +T++ +L
Sbjct: 12 FMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLA 71
Query: 73 IQALKAYFKFEGLDSEAEKLKTP----------KMPKTLPKSLTEEEVRRIINAAETLRD 122
+ +L +K E LKTP ++ + LP LT +E+RR++ + +
Sbjct: 72 LNSLSFLYK--------EILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP-KH 122
Query: 123 RLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYL 181
+L + LLYG+GLR+ E LRV+D++F+YG I + GKGGK+R V +++ L +K +
Sbjct: 123 QLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQI 181
>sp|P55635|Y4RB_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4RB >gi|2182599|gb|AAB92468.1|
(AE000093) Y4rB [Rhizobium sp. NGR234]
Length = 314
Score = 79.2 bits (192), Expect = 5e-14
Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 31/212 (14%)
Query: 95 PKMPKTL-PKSLTEEEVRRIINAAETLRDRL------------ILLLLYGAGLRVSELCN 141
P PK P ++E+++R+++AA + R + LL +GLR+ E N
Sbjct: 94 PFRPKRARPYLYSKEDIQRLLSAALEMPCRYTRCKLRPWTYYCLFGLLSVSGLRLGEARN 153
Query: 142 LRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRNDD------SPYLFVEM 195
L++ DV+F+ V+ +RG K GK R+VP+ S + ++ YL+ R SPYLF
Sbjct: 154 LKLADVDFDAAVLTIRGTKFGKSRLVPMHASTCAVLRDYLKRRRQHCAAQAASPYLFTSQ 213
Query: 196 KRKRKDKLS-PKTVWRLVKKYGRKAGVEL---TPHQLRHSFATHMLERGID--------I 243
R D +T + L ++ G + + H +RH FAT+ L R + +
Sbjct: 214 LGNRLDVGDIHRTFYALSRQIGLRGATDSHGPRLHDMRHVFATNTLVRWYEAEQDPERLL 273
Query: 244 RIIQELLGHSNLSTTQIYTKVSTKHLKEAVKK 275
I+ LGH +++ TQ Y S + +KEA+++
Sbjct: 274 PILSTYLGHVHVADTQWYLTGSPELMKEAMRR 305
>gb|AAC17173.1| (AF065141) unknown [Streptococcus mutans]
Length = 356
Score = 78.8 bits (191), Expect = 7e-14
Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 49/286 (17%)
Query: 36 YISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNLVIQALKAYFKF-----EGLDSEA- 89
++SK E R+ K KR+G S ++N + AL + +K+ E D E
Sbjct: 73 HLSKKDMESFILYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVENADGEPY 132
Query: 90 ------EKLKTPKMPKTLPKSLTEEEVRRIINAAETL----------------------- 120
+K+ T K +TL + E +++ ET+
Sbjct: 133 FYRNVMKKVSTKKKKETLA-ARAENIKQKLFLGNETMEFLEYVDCEYEQKLSKRALSSFR 191
Query: 121 ----RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSE 176
RD I+ LL +G+R+SE NL ++DVN +I V KGGK V ++
Sbjct: 192 KNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTR-KGGKHDSVNVAGFAKPY 250
Query: 177 IKRYL-------ESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLR 229
++ Y+ +++ D + F+ R +++ ++ ++V KY + + +TPH+LR
Sbjct: 251 LENYITIRRGRYKAKKTDLAF-FLSEYRGVPNRMDASSIEKMVAKYSQDFKIRVTPHKLR 309
Query: 230 HSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKK 275
H+ AT + + ++ LGH++ T +YT + K A+ K
Sbjct: 310 HTLATRLYDATKSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDK 355
>pir||S40097 hypothetical protein - Clostridium butyricum
>gi|436132|emb|CAA82325.1| (Z29084) product is similar
to TnpA of transposon Tn554 from Staphylococcus aureus
[Clostridium butyricum]
Length = 364
Score = 78.8 bits (191), Expect = 7e-14
Identities = 74/338 (21%), Positives = 143/338 (41%), Gaps = 72/338 (21%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE-------EGHSPTARDALRFLAKLKR-- 61
+ I F + + +RNT+RMY ++ +FE + T D F+ L+
Sbjct: 15 EPILRFIRFKDNTNFARNTLRMYCQHLKLYFEYLEQRGLDFQKVTIDDLALFVNWLQNPY 74
Query: 62 ------------KGYSTRSLNLVIQALKAYFKF--------------------------- 82
S R++N+V+ + A++ +
Sbjct: 75 KSLKVIPTNKVESSRSPRTINIVVNTVLAFYDYILRHEEYSNNISDRLKKFVSAPSRNFK 134
Query: 83 ---EGLDSEAEKLKTP----KMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLR 135
G+ E +K+ + K+P + PK+LT+EE+ +IN RD+ +L LLY G+R
Sbjct: 135 GFLYGIAYEQKKVTSNILRLKVPNSKPKTLTKEEITTLINTCNNFRDKFLLNLLYETGIR 194
Query: 136 VSELCNLRVEDVNFEYGVIVVRGGKG-----------GKDRVVPISESLLSEIKRYL--- 181
+ E +L +ED + +I ++ +G R + IS++L Y+
Sbjct: 195 IGEALSLWIEDFDISDMIIDLK-DRGELENNAEIKTVSSPRRIDISQNLADMFMEYVAEY 253
Query: 182 ESRNDDSPYLFVEMKRKRKDK-LSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERG 240
+ ++ ++F+++ + + K ++ V L + +K + +TPH RH+ T + G
Sbjct: 254 HTEEVETNHVFIKISGENQYKPMNYIDVDNLFRTLKKKTDIHVTPHIFRHTSLTILRMAG 313
Query: 241 IDIRIIQELLGHSNLSTT-QIYTKVSTKHLKEAVKKAK 277
+ +++ GH N+ TT Q Y S K + E K +
Sbjct: 314 WEPELLRIRAGHKNIYTTLQTYIHPSDKEITEEFNKTQ 351
>gb|AAC34799.1| (AF063010) integrase [Enterococcus faecium]
>gi|8100684|gb|AAF72368.1|AF192329_29 (AF192329)
integrase [Enterococcus faecalis]
Length = 397
Score = 77.3 bits (187), Expect = 2e-13
Identities = 69/257 (26%), Positives = 117/257 (44%), Gaps = 53/257 (20%)
Query: 51 DALRFLAKLKRKGYSTRSLNLVIQALKAYFKF-----------------EGLDSEAEKLK 93
DA + ++K KG S +++N ++LKA F + LD + E
Sbjct: 130 DAKEWALRMKEKGLSYKTINNDKRSLKAAFYTAIQDDCIRKNPFDFQLSDVLDDDTE--- 186
Query: 94 TPKMPKTLPKSLTEEEVRRIINAAETLRDRL-ILLLLYGAGLRVSELCNLRVEDVNFEYG 152
PK+P T + EE I + + +++L G GLR+SELC L +D++FE
Sbjct: 187 -PKVPLTPAQ---EESFLSFIQGDKVYQKHYDAIVILLGTGLRISELCGLTDKDLDFENR 242
Query: 153 VIVV------RGGKG---------GKDRVVPISESLLSEIKRYLESRNDDSPYL------ 191
VI+V G G R +P++E + +R +++R P++
Sbjct: 243 VIIVSHQLLRNTGVGYYIDEPKTQSGVRKIPMNEEVYQAFQRVIKNRKGAKPFIIDGYAN 302
Query: 192 FVEMKRKRKDKLSPK---TVWRLVKKYGRKAGVEL----TPHQLRHSFATHMLERGIDIR 244
F+ +K+ + RLVKKY + L TPH +RH+F T + G++ +
Sbjct: 303 FLFLKQNGYPMTAVDYGGMFGRLVKKYNKSHEEALPKTTTPHAMRHTFCTRLANAGMNPK 362
Query: 245 IIQELLGHSNLSTTQIY 261
+Q ++GHSN++ T Y
Sbjct: 363 ALQYIMGHSNITMTLNY 379
>pir||C64604 integrase/recombinase - Helicobacter pylori (strain 26695)
>gi|2313795|gb|AAD07734.1| (AE000580)
integrase/recombinase (xerC) [Helicobacter pylori 26695]
Length = 362
Score = 76.9 bits (186), Expect = 3e-13
Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 23/190 (12%)
Query: 101 LPKSLTEEEVRRIINAAETL--------RDRLILLLLYGAGLRVSELCNLRVEDVNFEYG 152
LP L EE+ + + + + + R+RL++ ++ G+R +E L+++D E G
Sbjct: 171 LPTHLNNEELEKFLESIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENG 230
Query: 153 VIVVR-GGKGGKDRVVPIS----ESLLSE--IKRYLESRNDDSPYLFVEMKRKRKDKLSP 205
+ GKG K R V + ESLL E I+R L +D LF K L+
Sbjct: 231 CYTILIKGKGDKYRAVMLKAFHIESLLKEWLIERELYPVKND--LLFCNQKGSA---LTQ 285
Query: 206 KTVWRLVKKYGRKAGVELTP---HQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYT 262
+++ V++ AG+ H LRHSFAT + ++ D+ ++QE LGH++L+T++IYT
Sbjct: 286 AYLYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYT 345
Query: 263 KVSTKHLKEA 272
+ L+EA
Sbjct: 346 HFDKQRLEEA 355
>pir||B71910 integrase-recombinase protein (xercd family) - Helicobacter pylori
(strain J99) >gi|4155169|gb|AAD06197.1| (AE001493)
INTEGRASE-RECOMBINASE PROTEIN (XERCD FAMILY)
[Helicobacter pylori J99]
Length = 356
Score = 76.9 bits (186), Expect = 3e-13
Identities = 57/188 (30%), Positives = 94/188 (49%), Gaps = 19/188 (10%)
Query: 101 LPKSLTEEEVRRIINAAETL--------RDRLILLLLYGAGLRVSELCNLRVEDVNFEYG 152
LP L EE+ + + + + + R+RL++ ++ G+R +E L+++D E G
Sbjct: 165 LPTHLNNEELEKFLESIDKIEMSAKVRARNRLLIKIIVFTGMRSNEALQLKIKDFTLENG 224
Query: 153 VIVVR-GGKGGKDRVVPIS----ESLLSEIKRYLESRNDDSPYLFVEMKRKRKDKLSPKT 207
+ GKG K R V + ESLL E E + LF K L+
Sbjct: 225 CYTILIKGKGDKYRAVMLKAFHIESLLKEWLTERELYPVKNDLLFCNQKGSA---LTQAY 281
Query: 208 VWRLVKKYGRKAGVELTP---HQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKV 264
+++ V++ AG+ H LRHSFAT + ++ D+ ++QE LGH++L+T++IYT
Sbjct: 282 LYKQVERIINFAGLRREKNGAHMLRHSFATLLYQKRHDLILVQEALGHASLNTSRIYTHF 341
Query: 265 STKHLKEA 272
LKEA
Sbjct: 342 DKDRLKEA 349
>sp|P27451|TNR5_STRPN TRANSPOSASE (INTEGRASE) (TRANSPOSON TN1545) >gi|76007|pir||RSSOP5
integrase - Streptococcus pneumoniae transposon Tn1545
>gi|47463|emb|CAA43360.1| (X61025) integrase of Tn1545
[Streptococcus pneumoniae]
Length = 405
Score = 76.1 bits (184), Expect = 4e-13
Identities = 70/251 (27%), Positives = 120/251 (46%), Gaps = 42/251 (16%)
Query: 51 DALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEK------LKTPKMPKTLPKS 104
DA + ++ GY+ +++N ++LKA F D K LK T+PK+
Sbjct: 130 DAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVRKNPFDFQLKAVLDDDTVPKT 189
Query: 105 -LTEEEVRRIINAAETLR------DRLILLLLYGAGLRVSELCNLRVEDVNFEYGVI--- 154
LTEE+ +++ A+ + D +++LL GLR+SE L + D++FE ++
Sbjct: 190 VLTEEQEEKLLAFAKADKTYSKNYDEILILLK--TGLRISEFGGLTLPDLDFENRLVNID 247
Query: 155 --VVRGGKGGK----------DRVVPISESLLSEIKRYLESRNDD--------SPYLFVE 194
++R + G +R VP+ E KR L +R +D S +LF+
Sbjct: 248 HQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFKRVLANRKNDKRVEIDGYSDFLFLN 307
Query: 195 MKRKRKDKLSPKTVWR-LVKKYGRKAGVEL---TPHQLRHSFATHMLERGIDIRIIQELL 250
K K + + LVKKY + +L TPH LRH+F T+ G++ + +Q ++
Sbjct: 308 RKNYPKVASDYNGMMKGLVKKYNKYNEDKLPHITPHSLRHTFCTNYANAGMNPKALQYIM 367
Query: 251 GHSNLSTTQIY 261
GH+N++ T Y
Sbjct: 368 GHANIAMTLNY 378
>sp|P22886|TNR6_ENTFA TRANSPOSASE (INTEGRASE) (TRANSPOSON TN916)
>gi|154956|gb|AAA19427.1| (M37184) ORF2 [Transposon
Tn916] >gi|532535|gb|AAB60030.1| (U09422) ORF2
[Enterococcus faecalis] >gi|1097952|prf||2114402Y int-Tn
gene [Enterococcus faecalis]
Length = 405
Score = 76.1 bits (184), Expect = 4e-13
Identities = 70/251 (27%), Positives = 120/251 (46%), Gaps = 42/251 (16%)
Query: 51 DALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEK------LKTPKMPKTLPKS 104
DA + ++ GY+ +++N ++LKA F D K LK T+PK+
Sbjct: 130 DAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVRKNPFDFQLKAVLDDDTVPKT 189
Query: 105 -LTEEEVRRIINAAETLR------DRLILLLLYGAGLRVSELCNLRVEDVNFEYGVI--- 154
LTEE+ +++ A+ + D +++LL GLR+SE L + D++FE ++
Sbjct: 190 VLTEEQEEKLLAFAKADKTYSKNYDEILILLK--TGLRISEFGGLTLPDLDFENRLVNID 247
Query: 155 --VVRGGKGGK----------DRVVPISESLLSEIKRYLESRNDD--------SPYLFVE 194
++R + G +R VP+ E KR L +R +D S +LF+
Sbjct: 248 HQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFKRVLANRKNDKRVEIDGYSDFLFLN 307
Query: 195 MKRKRKDKLSPKTVWR-LVKKYGRKAGVEL---TPHQLRHSFATHMLERGIDIRIIQELL 250
K K + + LVKKY + +L TPH LRH+F T+ G++ + +Q ++
Sbjct: 308 RKNYPKVASDYNGMMKGLVKKYNKYNEDKLPHITPHSLRHTFCTNYANAGMNPKALQYIM 367
Query: 251 GHSNLSTTQIY 261
GH+N++ T Y
Sbjct: 368 GHANIAMTLNY 378
>gb|AAB60031.1| (U09422) ORF3 [Enterococcus faecalis] >gi|1097930|prf||2114402AA
ORF 3 [Enterococcus faecalis]
Length = 361
Score = 76.1 bits (184), Expect = 4e-13
Identities = 70/251 (27%), Positives = 120/251 (46%), Gaps = 42/251 (16%)
Query: 51 DALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEK------LKTPKMPKTLPKS 104
DA + ++ GY+ +++N ++LKA F D K LK T+PK+
Sbjct: 86 DAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVRKNPFDFQLKAVLDDDTVPKT 145
Query: 105 -LTEEEVRRIINAAETLR------DRLILLLLYGAGLRVSELCNLRVEDVNFEYGVI--- 154
LTEE+ +++ A+ + D +++LL GLR+SE L + D++FE ++
Sbjct: 146 VLTEEQEEKLLAFAKADKTYSKNYDEILILLK--TGLRISEFGGLTLPDLDFENRLVNID 203
Query: 155 --VVRGGKGGK----------DRVVPISESLLSEIKRYLESRNDD--------SPYLFVE 194
++R + G +R VP+ E KR L +R +D S +LF+
Sbjct: 204 HQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFKRVLANRKNDKRVEIDGYSDFLFLN 263
Query: 195 MKRKRKDKLSPKTVWR-LVKKYGRKAGVEL---TPHQLRHSFATHMLERGIDIRIIQELL 250
K K + + LVKKY + +L TPH LRH+F T+ G++ + +Q ++
Sbjct: 264 RKNYPKVASDYNGMMKGLVKKYNKYNEDKLPHITPHSLRHTFCTNYANAGMNPKALQYIM 323
Query: 251 GHSNLSTTQIY 261
GH+N++ T Y
Sbjct: 324 GHANIAMTLNY 334
>gb|AAB60032.1| (U09422) ORF4 [Enterococcus faecalis] >gi|1097931|prf||2114402AB
ORF 4 [Enterococcus faecalis]
Length = 324
Score = 76.1 bits (184), Expect = 4e-13
Identities = 70/251 (27%), Positives = 120/251 (46%), Gaps = 42/251 (16%)
Query: 51 DALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEK------LKTPKMPKTLPKS 104
DA + ++ GY+ +++N ++LKA F D K LK T+PK+
Sbjct: 49 DAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVRKNPFDFQLKAVLDDDTVPKT 108
Query: 105 -LTEEEVRRIINAAETLR------DRLILLLLYGAGLRVSELCNLRVEDVNFEYGVI--- 154
LTEE+ +++ A+ + D +++LL GLR+SE L + D++FE ++
Sbjct: 109 VLTEEQEEKLLAFAKADKTYSKNYDEILILLK--TGLRISEFGGLTLPDLDFENRLVNID 166
Query: 155 --VVRGGKGGK----------DRVVPISESLLSEIKRYLESRNDD--------SPYLFVE 194
++R + G +R VP+ E KR L +R +D S +LF+
Sbjct: 167 HQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFKRVLANRKNDKRVEIDGYSDFLFLN 226
Query: 195 MKRKRKDKLSPKTVWR-LVKKYGRKAGVEL---TPHQLRHSFATHMLERGIDIRIIQELL 250
K K + + LVKKY + +L TPH LRH+F T+ G++ + +Q ++
Sbjct: 227 RKNYPKVASDYNGMMKGLVKKYNKYNEDKLPHITPHSLRHTFCTNYANAGMNPKALQYIM 286
Query: 251 GHSNLSTTQIY 261
GH+N++ T Y
Sbjct: 287 GHANIAMTLNY 297
>pir||B82927 integrase-recombinase protein UU145 [imported] - Ureaplasma
urealyticum >gi|6899105|gb|AAF30551.1|AE002115_3
(AE002115) integrase-recombinase protein [Ureaplasma
urealyticum]
Length = 260
Score = 76.1 bits (184), Expect = 4e-13
Identities = 73/281 (25%), Positives = 124/281 (43%), Gaps = 46/281 (16%)
Query: 9 RDDTIEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRS 68
R I +F ++ S+NT Y ++ KF + S + + +L Y +S
Sbjct: 3 RQSMINKFLQSIKKRNLSKNTYLTYESHLRKFKVQEQS-----FKQIIKQLLNNNYKPKS 57
Query: 69 LNLVIQALKAYFKFEG---LDSEAEKLKTPKMPKTLPKSLTEEEVRRI--INAAETLRDR 123
L L L Y+KF E E++K K K+ K + +++++ IN +T + +
Sbjct: 58 LKLAKSILSEYWKFSKQYQYVQELEQIKLSKEQKSYKKVFSLDDIKKCLKINKQDTKQIK 117
Query: 124 L---ILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY 180
ILL G+R E+ L+ +N + VI GKG K+R + E L + IK
Sbjct: 118 FYKTILLFYATTGIRAMEIYQLK--QINNDLFVI---SGKGNKNRQICYIEHLWNNIKN- 171
Query: 181 LESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHML--- 237
K S KT+ + +K + V L H LR SF T+ L
Sbjct: 172 -------------------KKLPSTKTLRKYLKVFFDNKNVSL--HTLRRSFITNFLTSN 210
Query: 238 ---ERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKK 275
+RG ++I+Q+L+GH N+ TT Y +++ + + + K+
Sbjct: 211 ENYKRGDMLKIVQDLVGHENIQTTLQYVQITKEQVDDVYKE 251
>gb|AAC36982.1| (L15633) [Conjugative transposon Tn916 (from Enterococcus faecalis,
DS16), 3' end.], gene products [Transposon Tn916]
Length = 405
Score = 75.7 bits (183), Expect = 6e-13
Identities = 70/251 (27%), Positives = 120/251 (46%), Gaps = 42/251 (16%)
Query: 51 DALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEK------LKTPKMPKTLPKS 104
DA + ++ GY+ +++N ++LKA F D K LK T+PK+
Sbjct: 130 DAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVRKNPFDFQLKAVLDDDTVPKT 189
Query: 105 -LTEEEVRRIINAAETLR------DRLILLLLYGAGLRVSELCNLRVEDVNFEYGVI--- 154
LTEE+ +++ A+ + D +++LL GLR+SE L + D++FE ++
Sbjct: 190 VLTEEQEEKLLAFAKADKTYSKNYDEILILLK--TGLRISEFGGLTLPDLDFENRLVNID 247
Query: 155 --VVRGGKGGK----------DRVVPISESLLSEIKRYLESRNDD--------SPYLFVE 194
++R + G +R VP+ E KR L +R +D S +LF+
Sbjct: 248 HQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFKRVLANRKNDKRVEIDGYSDFLFLN 307
Query: 195 MKRKRKDKLSPKTVWR-LVKKYGRKAGVEL---TPHQLRHSFATHMLERGIDIRIIQELL 250
K K + + LVKKY + +L TPH LRH+F T+ G++ + +Q ++
Sbjct: 308 RKNYPKVVSDYNGMMKGLVKKYNKYNEDKLPHITPHSLRHTFCTNYANAGMNPKALQYIM 367
Query: 251 GHSNLSTTQIY 261
GH+N++ T Y
Sbjct: 368 GHANIAMTLNY 378
>gb|AAC36983.1| (L15633) [Conjugative transposon Tn916 (from Enterococcus faecalis,
DS16), 3' end.], gene products [Transposon Tn916]
Length = 361
Score = 75.7 bits (183), Expect = 6e-13
Identities = 70/251 (27%), Positives = 120/251 (46%), Gaps = 42/251 (16%)
Query: 51 DALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEK------LKTPKMPKTLPKS 104
DA + ++ GY+ +++N ++LKA F D K LK T+PK+
Sbjct: 86 DAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVRKNPFDFQLKAVLDDDTVPKT 145
Query: 105 -LTEEEVRRIINAAETLR------DRLILLLLYGAGLRVSELCNLRVEDVNFEYGVI--- 154
LTEE+ +++ A+ + D +++LL GLR+SE L + D++FE ++
Sbjct: 146 VLTEEQEEKLLAFAKADKTYSKNYDEILILLK--TGLRISEFGGLTLPDLDFENRLVNID 203
Query: 155 --VVRGGKGGK----------DRVVPISESLLSEIKRYLESRNDD--------SPYLFVE 194
++R + G +R VP+ E KR L +R +D S +LF+
Sbjct: 204 HQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFKRVLANRKNDKRVEIDGYSDFLFLN 263
Query: 195 MKRKRKDKLSPKTVWR-LVKKYGRKAGVEL---TPHQLRHSFATHMLERGIDIRIIQELL 250
K K + + LVKKY + +L TPH LRH+F T+ G++ + +Q ++
Sbjct: 264 RKNYPKVVSDYNGMMKGLVKKYNKYNEDKLPHITPHSLRHTFCTNYANAGMNPKALQYIM 323
Query: 251 GHSNLSTTQIY 261
GH+N++ T Y
Sbjct: 324 GHANIAMTLNY 334
>gb|AAC36984.1| (L15633) [Conjugative transposon Tn916 (from Enterococcus faecalis,
DS16), 3' end.], gene products [Transposon Tn916]
Length = 324
Score = 75.7 bits (183), Expect = 6e-13
Identities = 70/251 (27%), Positives = 120/251 (46%), Gaps = 42/251 (16%)
Query: 51 DALRFLAKLKRKGYSTRSLNLVIQALKAYFKFEGLDSEAEK------LKTPKMPKTLPKS 104
DA + ++ GY+ +++N ++LKA F D K LK T+PK+
Sbjct: 49 DAKEWAIRMSENGYAYQTINNYKRSLKASFYIAIQDDCVRKNPFDFQLKAVLDDDTVPKT 108
Query: 105 -LTEEEVRRIINAAETLR------DRLILLLLYGAGLRVSELCNLRVEDVNFEYGVI--- 154
LTEE+ +++ A+ + D +++LL GLR+SE L + D++FE ++
Sbjct: 109 VLTEEQEEKLLAFAKADKTYSKNYDEILILLK--TGLRISEFGGLTLPDLDFENRLVNID 166
Query: 155 --VVRGGKGGK----------DRVVPISESLLSEIKRYLESRNDD--------SPYLFVE 194
++R + G +R VP+ E KR L +R +D S +LF+
Sbjct: 167 HQLLRDTEIGYYIETPKTKSGERQVPMVEEAYQAFKRVLANRKNDKRVEIDGYSDFLFLN 226
Query: 195 MKRKRKDKLSPKTVWR-LVKKYGRKAGVEL---TPHQLRHSFATHMLERGIDIRIIQELL 250
K K + + LVKKY + +L TPH LRH+F T+ G++ + +Q ++
Sbjct: 227 RKNYPKVVSDYNGMMKGLVKKYNKYNEDKLPHITPHSLRHTFCTNYANAGMNPKALQYIM 286
Query: 251 GHSNLSTTQIY 261
GH+N++ T Y
Sbjct: 287 GHANIAMTLNY 297
>pir||T46957 probable site-specific recombinase [imported] - Lactobacillus
leichmannii (fragment) >gi|1085059|emb|CAA55635.1|
(X78999) unknown [Lactobacillus leichmannii]
Length = 308
Score = 75.7 bits (183), Expect = 6e-13
Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 7/159 (4%)
Query: 121 RDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRY 180
RD ++ L+ G G+RVSE + ++D+N + + + KGG+ VP+++ L +++Y
Sbjct: 139 RDMAVIALILGTGIRVSECAGVDMKDLNLKEATLDITR-KGGQRDSVPVADWTLPYLEKY 197
Query: 181 LESRND------DSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFAT 234
L R D + F+ + +++ + ++V KY G LTPH+LRH+ A+
Sbjct: 198 LAIRADRYKAPATNKAFFLTSYHQECRRMTTNAIEKMVGKYSAAFGHPLTPHKLRHTVAS 257
Query: 235 HMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAV 273
+ + D ++ + LG S T +YT V + + A+
Sbjct: 258 ELYQATKDQVMVAQQLGQKGTSATDLYTHVDQREQRAAL 296
>sp|P55634|Y4RA_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4RA >gi|2182598|gb|AAB92467.1|
(AE000093) Y4rA [Rhizobium sp. NGR234]
Length = 409
Score = 75.3 bits (182), Expect = 7e-13
Identities = 68/270 (25%), Positives = 125/270 (46%), Gaps = 28/270 (10%)
Query: 26 SRNTVRMYTYYISKF----FEEGHSPTAR----DALRFLAKLKRKGYSTRSLNLVIQALK 77
SR T+ Y + F F +G A+ D F+ K K + R +V AL+
Sbjct: 132 SRQTIINYRPVVRDFLSFRFGDGEISLAQLRAADVTDFVQK-KVSRLNMRRAKIVTTALR 190
Query: 78 AYFKFEGLDSEAEKLKTPKMP-------KTLPKSLTEEEVRRIINAAET-----LRDRLI 125
++ + + +P ++P+++ ++V R++++ + RD +
Sbjct: 191 SFLSYARYRGDITSDLAAAVPIVANWSLSSIPRAIGRDDVSRLLSSIDRDTPIGCRDYAM 250
Query: 126 LLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVP--ISESLLSEIKRYLES 183
+L L GLR SE+ L ++D+++ G I VRG G + +P + E++ + R
Sbjct: 251 ILALARLGLRSSEVVTLELDDIDWVAGRIRVRGKHGRNELPLPADVGEAIADYLWR-ARP 309
Query: 184 RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTP---HQLRHSFATHMLERG 240
RN S +F+ K + + P + +V++ ++ G++ HQ RH A+ ML G
Sbjct: 310 RNA-SRRVFLRDKAPIRGFVGPSGLGSIVRRSLKRTGIDSPTKGTHQFRHGLASEMLRGG 368
Query: 241 IDIRIIQELLGHSNLSTTQIYTKVSTKHLK 270
+ I E+LGH ++ TT IY KV L+
Sbjct: 369 ASLGEIGEVLGHRHVQTTAIYAKVDLDALR 398
>pir||I39527 lambda integrase family of site specific recombinase - Alcaligenes
eutrophus plasmid pAE1 >gi|899056|gb|AAA87238.1|
(L34580) lambda integrase family of site specific
recombinase; ORF2 [Plasmid pAE1]
Length = 415
Score = 74.9 bits (181), Expect = 1e-12
Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 29/273 (10%)
Query: 24 GKSRNTVRMYTYYISKFFEEGHSPTARDALR--FLAKLKR-------KGYSTRSLNLVIQ 74
G ++N++ +Y +I F + HS L F A R +G S L+
Sbjct: 126 GLAKNSLLVYGPFIRDFLDS-HSANDGTILADAFCAVTIRDHFLTYSEGRSAEYTRLMAV 184
Query: 75 ALKAYFKFEGLDSEAEKLKTPKMPK-------TLPKSLTEEEVRRIINAAETL-----RD 122
AL+++ F L + + +P T+P LT E+ +I +A+ RD
Sbjct: 185 ALRSFCHFLFLRGDTARDLYESVPSVRKWRQSTVPTFLTPEQQEALIASADRSTPTGRRD 244
Query: 123 RLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLE 182
ILLLL GLR E+ ++++D+++ G +VV G KG VP+ + + I YL
Sbjct: 245 YAILLLLARLGLRAGEIVAMQLDDIHWRSGELVVHG-KGQMVEHVPLPSEVGAAIATYLR 303
Query: 183 SRNDDSP--YLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVEL----TPHQLRHSFATHM 236
S ++F+ R P + ++V + +AG + H RH AT M
Sbjct: 304 DGRGASASRHVFLRRLAPRVGLAGPAAIGKIVCQAFARAGFRPACRGSAHLFRHGLATTM 363
Query: 237 LERGIDIRIIQELLGHSNLSTTQIYTKVSTKHL 269
+ G I I E+L H + +T IY KV+ + L
Sbjct: 364 IRHGASIAEIAEVLRHRSPDSTAIYAKVAFEDL 396
>emb|CAB86871.1| (AJ277027) integrase [Klebsiella pneumoniae]
Length = 266
Score = 74.9 bits (181), Expect = 1e-12
Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE---EGHSPTARDA-----LRFLAKLKRK 62
D + E YL S T + Y +++ F H T + L +LA ++
Sbjct: 18 DQLRERIRYLHY---SLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKV 74
Query: 63 GYSTRSLNLVIQALKAYFKFEG--LDSEA---EKLKTPKMPKTLPKSLTEEEVRRIINAA 117
ST QAL A F G L ++ +++ P+ + LP LT +EV RI+
Sbjct: 75 SVSTHR-----QALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFL 129
Query: 118 ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEI 177
E RL LLYG G+R+SE LRV+D++F++G I+VR GKG KDR + + ESL +
Sbjct: 130 EG-EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188
Query: 178 KRYL 181
+ L
Sbjct: 189 REQL 192
>gi|9626516 Homology to site specific recombinases [Acholeplasma phage L2]
>gi|1174961|sp|P42540|VINT_BPL2 PROBABLE
INTEGRASE/RECOMBINASE (ORF5) >gi|289344|gb|AAA87961.1|
(L13696) Homology to site specific recombinases
[Acholeplasma phage L2]
Length = 289
Score = 73.7 bits (178), Expect = 2e-12
Identities = 48/166 (28%), Positives = 87/166 (51%), Gaps = 4/166 (2%)
Query: 111 RRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPIS 170
+ + ++ ++ + + LL +GLRVSE N+++ D++F+ VI V K K R P S
Sbjct: 120 KNLNSSKNSITYKSFIRLLLDSGLRVSEALNIKISDMDFKNKVIRVLSSKTRKQRYAPFS 179
Query: 171 ESLLSEIKRYLESRNDDSPYLFVE-MKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLR 229
L IK +E N YLF +K ++ +K K ++ +KK+ + H+ R
Sbjct: 180 SFSLKYIKELIEV-NPKRDYLFYNFIKDRQTNKNDIKLFYKRLKKHLNLERIH--THRFR 236
Query: 230 HSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKK 275
+FA+ ++E G++I +Q++ HS + TT Y + + K + KK
Sbjct: 237 KTFASILIENGLNIDDLQKIFDHSRIETTIKYVQHNEKRALQEYKK 282
>gb|AAC53623.1| (U35133) recombinase [Cloning vector pBSL175]
Length = 193
Score = 73.7 bits (178), Expect = 2e-12
Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 22/181 (12%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE---EGHSPTARDA-----LRFLAKLKRK 62
D + E YL S T + Y +++ F H T + L +LA ++
Sbjct: 18 DQLRERIRYLHY---SLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKV 74
Query: 63 GYSTRSLNLVIQALKAYFKFEG--LDSEA---EKLKTPKMPKTLPKSLTEEEVRRIINAA 117
ST QAL A F G L ++ +++ P+ + LP LT +EV RI+
Sbjct: 75 SVSTHR-----QALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFL 129
Query: 118 ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEI 177
E RL LLYG G+R+SE LRV+D++F++G I+VR GKG KDR + + ESL +
Sbjct: 130 EG-EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188
Query: 178 K 178
+
Sbjct: 189 R 189
>pir||S60664 integrase - Escherichia coli (fragment)
Length = 191
Score = 73.7 bits (178), Expect = 2e-12
Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 22/181 (12%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE---EGHSPTARDA-----LRFLAKLKRK 62
D + E YL S T + Y +++ F H T + L +LA ++
Sbjct: 18 DQLRERIRYLHY---SLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKV 74
Query: 63 GYSTRSLNLVIQALKAYFKFEG--LDSEA---EKLKTPKMPKTLPKSLTEEEVRRIINAA 117
ST QAL A F G L ++ +++ P+ + LP LT +EV RI+
Sbjct: 75 SVSTHR-----QALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFL 129
Query: 118 ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEI 177
E RL LLYG G+R+SE LRV+D++F++G I+VR GKG KDR + + ESL +
Sbjct: 130 EG-EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188
Query: 178 K 178
+
Sbjct: 189 R 189
>sp|P55638|Y4RE_RHISN PUTATIVE INTEGRASE/RECOMBINASE Y4RE >gi|2182602|gb|AAB92471.1|
(AE000093) Y4rE [Rhizobium sp. NGR234]
Length = 310
Score = 73.7 bits (178), Expect = 2e-12
Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 32/282 (11%)
Query: 25 KSRNTVRMYTYYISKFFEEGHSPTARD-ALRFLAKLKRKGYSTRSLNLVIQALKAYFKFE 83
K T+R + Y+ + + +P R AL F+ S + + V++ Y
Sbjct: 28 KQAGTLRAFVRYVER--AQFDAPATRTMALDFVLSFGGAANSRATRHGVLRRFYEYLAV- 84
Query: 84 GLDSEAEKLKTPKMPKTL----PKSLTEEEVRRIINAAETLRDRL---------ILLLLY 130
D++ E LK P++ P+ L+E E+ +I+A + + ++ LL
Sbjct: 85 -YDAQTEALKRRAFPRSRAIPPPRILSEAELASLIDACARISPGIPLRGLTMATLIGLLA 143
Query: 131 GAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRNDDSP- 189
+GLR E+ L DV+ GV++VR K KDR+VP+ + + + RY R+ P
Sbjct: 144 SSGLRSGEVVRLDRSDVDLTNGVLLVRKTKFRKDRLVPVHATTQTALCRYARERDAAFPS 203
Query: 190 ----YLFVEMKRKRKDKLSPKTVWRLVKKY-GRKAGVELTPHQLRHSFAT------HMLE 238
F+ + R + + V+K+ G G L PH LRH FA H
Sbjct: 204 PKDQAFFLSSRGNRLSATGLQCGFAQVRKFAGLDDGKTLRPHDLRHRFAVTRMSLWHQQR 263
Query: 239 RGID--IRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKL 278
+ + ++ LGH+N S T Y S L A ++A L
Sbjct: 264 ANVQALLPVLATYLGHANYSDTAYYLTGSVDLLAMAAERAFL 305
>gi|10956351 pXO1-103 [Bacillus anthracis] >gi|7474211|pir||G59103 hypothetical
protein pXO1-103 - Bacillus anthracis virulence plasmid
pXO1 >gi|4894320|gb|AAD32408.1|AAD32408 (AF065404)
pXO1-103 [Bacillus anthracis]
Length = 317
Score = 73.7 bits (178), Expect = 2e-12
Identities = 77/309 (24%), Positives = 140/309 (44%), Gaps = 51/309 (16%)
Query: 3 EREERVRDDTIEEFATYLE-----LEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLA 57
ER +++ + F Y++ ++ S N + +Y Y +SK + A LR
Sbjct: 33 ERTKKLYLHDLSHFLRYIKETIGIIKELSHNEMEIYFYQLSKKY-------AATTLR--- 82
Query: 58 KLKRKGYSTRSLNLVIQALKAYFKFEGL-DSEAEKLK--TPKMPKTLPKSLTEEEVRRII 114
R +V Q LK + GL D+ + +LK + K + + + L EEV I+
Sbjct: 83 ---------RKKTVVQQFLKYVYDNNGLSDNFSSRLKKVSVKKEELVNRDLFPEEVNEIL 133
Query: 115 NAAETLRDRL--ILLLLYGAGLRVSELCNLRVEDVNFE--YGVIVVRG-GKGGKDRVVPI 169
+ + + + LL GLR+ E+ N + D+ F V ++R GKG K R V I
Sbjct: 134 DTLKKTNFFMYSLFFLLTTTGLRIEEVANAKWADLVFHPSLNVYLLRVVGKGNKTREVRI 193
Query: 170 SESLLSEI---------KRYLESRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKK---YGR 217
E +L+++ K L++ + + + R D LS ++ + + R
Sbjct: 194 FEDVLNDLCHLRQLRKQKSELDASSSSAFLPKADGSHYRADYLSKYVAEKIEETNLPFLR 253
Query: 218 KAGVELTPHQLRHSFATHMLERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAK 277
+TPH RH FA H++ +G++++ I++ LGH ++ TT+ ++L+E ++
Sbjct: 254 YRKHRITPHTCRHFFANHLMGKGVELKKIRDYLGHESIMTTE-------RYLRERTRRQN 306
Query: 278 LVESIIGGS 286
L IG S
Sbjct: 307 LATIDIGNS 315
>sp|P18021|REDM_ECOLI RESOLVASE (PROTEIN D) >gi|78547|pir||JT0371 hypothetical protein
(cmi 5' region) - Escherichia coli plasmid ColBM-Cl139
>gi|144169|gb|AAA23010.1| (M35683) ORF [Plasmid
pColBM-C1139] >gi|147038|gb|AAA24255.1| (J03312) D
protein [Plasmid ColBM-Cl139]
Length = 260
Score = 73.4 bits (177), Expect = 3e-12
Identities = 51/198 (25%), Positives = 92/198 (45%), Gaps = 39/198 (19%)
Query: 101 LPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF-------EYGV 153
LPK L EV +++ LR +++L L+ G R++E L D + +
Sbjct: 39 LPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLAT 98
Query: 154 IVVRGGKGGKD-----------RVVPISES-LLSEIKRYLESRNDDSPYLFVEMKRKRKD 201
+ R K + R+VP+S+S +S+++ + + + +E + KR
Sbjct: 99 LKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVSQLQTMVATLK-----IPMERRNKRTG 153
Query: 202 KLSPKTVWRLVKKY---------------GRKAGVELTPHQLRHSFATHMLERGIDIRII 246
+ +W + + G V +TPH RHS+A HML GI ++++
Sbjct: 154 RTEKARIWEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVL 213
Query: 247 QELLGHSNLSTTQIYTKV 264
Q L+GH ++S+T++YTKV
Sbjct: 214 QSLMGHKSISSTEVYTKV 231
>gi|10955421 Resolvase [Escherichia coli] >gi|6009447|dbj|BAA84906.1| (AB024946)
Resolvase [Escherichia coli]
Length = 269
Score = 73.4 bits (177), Expect = 3e-12
Identities = 51/198 (25%), Positives = 92/198 (45%), Gaps = 39/198 (19%)
Query: 101 LPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF-------EYGV 153
LPK L EV +++ LR +++L L+ G R++E L D + +
Sbjct: 48 LPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLAT 107
Query: 154 IVVRGGKGGKD-----------RVVPISES-LLSEIKRYLESRNDDSPYLFVEMKRKRKD 201
+ R K + R+VP+S+S +S+++ + + + +E + KR
Sbjct: 108 LKQRTEKAARTAGRTPAGQQTHRLVPLSDSWYVSQLQTMVATLK-----IPLERRNKRTG 162
Query: 202 KLSPKTVWRLVKKY---------------GRKAGVELTPHQLRHSFATHMLERGIDIRII 246
+ +W + + G V +TPH RHS+A HML GI ++++
Sbjct: 163 RTEKARIWEVTDRTVRTWIGEAVAAAATDGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVL 222
Query: 247 QELLGHSNLSTTQIYTKV 264
Q L+GH ++S+T++YTKV
Sbjct: 223 QSLMGHKSISSTEVYTKV 240
>pir||A82919 integrase-recombinase protein UU222 [imported] - Ureaplasma
urealyticum >gi|6899190|gb|AAF30630.1|AE002121_6
(AE002121) integrase-recombinase protein [Ureaplasma
urealyticum]
Length = 250
Score = 73.0 bits (176), Expect = 4e-12
Identities = 62/261 (23%), Positives = 111/261 (41%), Gaps = 37/261 (14%)
Query: 13 IEEFATYLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNLV 72
+++F Y + S NT+R Y + + P ++ K+ + R+++L
Sbjct: 1 MKDFIRYTKKRNLSLNTIRTYESVLKHY-----EPVLDSWIKIRNKIINSNFKPRTIHLH 55
Query: 73 IQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETLRD--------RL 124
L ++F+F+ L + LK K+P+ K + + L D +
Sbjct: 56 KNVLLSFFEFKKLKRYLQNLKLLKLPQIEMKYFDVISKNNLYKKTDILDDDSLEIKKYKT 115
Query: 125 ILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESR 184
I+ L+ G+R EL L E +N V+ GKG K R + + +++++ E+
Sbjct: 116 IIRFLFETGIRAHELFFL--ESINNRLYVL----GKGNKKRQIFFVKQTFEQLQKFYENL 169
Query: 185 NDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGIDIR 244
K + KT+ +KK G TPH LR SFAT ML +G + +
Sbjct: 170 ---------------KGFETTKTLRLYIKKI---IGKNFTPHSLRRSFATFMLIKGANPK 211
Query: 245 IIQELLGHSNLSTTQIYTKVS 265
+ +GH+N+ TT Y ++
Sbjct: 212 TVMLQMGHANIQTTFSYLNLN 232
>gb|AAG02084.1|AF285416_2 (AF285416) XerC [Pseudomonas aeruginosa]
Length = 427
Score = 73.0 bits (176), Expect = 4e-12
Identities = 46/166 (27%), Positives = 85/166 (50%), Gaps = 10/166 (6%)
Query: 128 LLYGAGLRVSELCNLRVEDVNFEYGVIVVRGG--KGGKDRVVPISESLLSEIKRYLESR- 184
+ Y G+R++ L +R D++++ +I++RG K K+ VVPI+E L+ + R L+
Sbjct: 149 VFYYTGIRLNALLCIRKRDIDWDNQLILIRGETEKTHKEFVVPITEGLVPHLSRLLQEAE 208
Query: 185 -----NDDSPYLFVEMKRKRKDK-LSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLE 238
+DD + K K ++ V + +K K GV +TPH+ RH+ AT +++
Sbjct: 209 KAGFADDDQLFNVNRFSPHYKSKTMNSDQVEAMYRKLTEKVGVRMTPHRFRHTLATDLMK 268
Query: 239 R-GIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLVESII 283
+I + + LL HSN+ TT Y + H++ + L + +
Sbjct: 269 APERNIHLTKCLLNHSNIQTTMSYIEADYDHMRAVLHARSLAQGAL 314
>gi|9507462 resolvase [Plasmid ColIb-P9] >gi|4512459|dbj|BAA75108.1| (AB021078)
resolvase [Plasmid ColIb-P9]
Length = 259
Score = 72.2 bits (174), Expect = 6e-12
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 39/198 (19%)
Query: 101 LPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF-------EYGV 153
LPK L EV +++ LR +++L L+ G R++E L D + +
Sbjct: 39 LPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGARINEALALTRGDFSLTPPYPFVQLAT 98
Query: 154 IVVRGGKGGKD-----------RVVPISES-LLSEIKRYLESRNDDSPYLFVEMKRKRKD 201
+ R K + R+VP+S++ +S+++ + + + +E + KR
Sbjct: 99 LKQRTEKAARTAGRMPAGQQTHRLVPLSDAWYVSQLQTMVATLK-----IPMERRNKRTG 153
Query: 202 KLSPKTVWRLVKKY---------------GRKAGVELTPHQLRHSFATHMLERGIDIRII 246
+ +W + + G V +TPH RHS+A HML GI ++++
Sbjct: 154 RTEKARIWEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVL 213
Query: 247 QELLGHSNLSTTQIYTKV 264
Q L+GH ++S+T++YTKV
Sbjct: 214 QSLMGHKSISSTEVYTKV 231
>pir||B70965 probable integrase - Mycobacterium tuberculosis (strain H37RV)
>gi|1550687|emb|CAB02354.1| (Z80225) hypothetical
protein Rv2646 [Mycobacterium tuberculosis]
Length = 332
Score = 71.0 bits (171), Expect = 1e-11
Identities = 75/271 (27%), Positives = 125/271 (45%), Gaps = 22/271 (8%)
Query: 13 IEEFATYLELEGKSRNTVRMY-TYYISKFFEEGHSP---TARDALRFLAK---LKRKGYS 65
I+++ L G+ T+R+ T + G P TA L +L K L +G
Sbjct: 76 IDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRK 135
Query: 66 TRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLI 125
T L + AY D A+ L + PK P+ ++ + + A+ R L+
Sbjct: 136 TYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKADR-RIELM 194
Query: 126 LLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRN 185
+ L AGLR +E D+ + G+++V G KGGK R+VPIS+ L + I+
Sbjct: 195 IRLAGEAGLRRAEAAQAHTGDL-MDGGLLLVHG-KGGKRRIVPISDYLAALIR------- 245
Query: 186 DDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGIDIRI 245
D+P+ ++ L+ + V +LV R + T H LRH +AT ++R
Sbjct: 246 -DTPHGYL-FPNGTGGHLTAEHVGKLVS---RALPGDATMHTLRHRYATRAYRGSHNLRA 300
Query: 246 IQELLGHSNLSTTQIYTKVSTKHLKEAVKKA 276
+Q+LLGH+++ TT+ YT + ++ A A
Sbjct: 301 VQQLLGHASIVTTERYTALCDDEVRAAAAAA 331
>emb|CAA05031.1| (AJ001816) tyrosine recombinase IntI2 [Escherichia coli]
Length = 178
Score = 70.6 bits (170), Expect = 2e-11
Identities = 52/174 (29%), Positives = 86/174 (48%), Gaps = 10/174 (5%)
Query: 13 IEEFATYLELEGKSRNTVRMYTYYISKFF---EEGHSPT-----ARDALRFLAKLKRKGY 64
+ T + +G + T + Y ++I +F ++ H T R L LA +
Sbjct: 7 LNSIRTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMGSEEVRLFLSSLANSRHVAI 66
Query: 65 STRSLNLVIQALKAYFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRL 124
+T+ + L A + + + + K P+ LP ++ EV+RI+ +T R+++
Sbjct: 67 NTQKIALNALAFLYNRFLQQPLGDIDYIPASK-PRRLPSVISANEVQRILQVMDT-RNQV 124
Query: 125 ILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIK 178
I LLYGAGLR++E LRV+D +F+ G I V GKGGK R + L+ IK
Sbjct: 125 IFTLLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPAIK 178
>gi|9507757 resolvase [Plasmid F] >gi|8918867|dbj|BAA97914.1| (AP001918)
resolvase [Plasmid F]
Length = 268
Score = 70.2 bits (169), Expect = 3e-11
Identities = 49/198 (24%), Positives = 91/198 (45%), Gaps = 39/198 (19%)
Query: 101 LPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF-------EYGV 153
LPK L EV +++ L +++L L+ G R++E L D + +
Sbjct: 48 LPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLAT 107
Query: 154 IVVRGGKGGKD-----------RVVPISES-LLSEIKRYLESRNDDSPYLFVEMKRKRKD 201
+ R K + R+VP+S+S +S+++ + + + +E + +R
Sbjct: 108 LKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVSQLQTMVATLK-----IPMERRNRRTG 162
Query: 202 KLSPKTVWRLVKKY---------------GRKAGVELTPHQLRHSFATHMLERGIDIRII 246
+ +W + + G V +TPH RHS+A HML GI ++++
Sbjct: 163 RTEKARIWEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVL 222
Query: 247 QELLGHSNLSTTQIYTKV 264
Q L+GH ++S+T++YTKV
Sbjct: 223 QSLMGHKSISSTEVYTKV 240
>sp|P06615|REDF_ECOLI RESOLVASE (PROTEIN D) >gi|78383|pir||A24716 D protein - Escherichia
coli plasmid miniF >gi|41210|emb|CAA28640.1| (X04967) D
protein (AA 1-804) [Escherichia coli]
Length = 268
Score = 69.9 bits (168), Expect = 3e-11
Identities = 52/197 (26%), Positives = 95/197 (47%), Gaps = 37/197 (18%)
Query: 101 LPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF-------EYGV 153
LPK L EV +++ L +++L L+ G R++E L D + +
Sbjct: 48 LPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLAT 107
Query: 154 IVVRGGKGGKD-----------RVVPISES--------LLSEIKRYLESRNDDSPYLFVE 194
+ R K + R+VP+S+S +++++K +E RN +
Sbjct: 108 LKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVSQLQTMVAQLKIPMERRNRRTG----R 163
Query: 195 MKRKRKDKLSPKTVWRLVKKY-------GRKAGVELTPHQLRHSFATHMLERGIDIRIIQ 247
++ R +++ +TV + + G V +TPH RHS+A HML GI ++++Q
Sbjct: 164 TEKARIWEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQ 223
Query: 248 ELLGHSNLSTTQIYTKV 264
L+GH ++S+T++YTKV
Sbjct: 224 SLMGHKSISSTEVYTKV 240
>gb|AAA24900.1| (M12987) Protein D [Plasmid F]
Length = 256
Score = 69.9 bits (168), Expect = 3e-11
Identities = 52/197 (26%), Positives = 95/197 (47%), Gaps = 37/197 (18%)
Query: 101 LPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNLRVEDVNF-------EYGV 153
LPK L EV +++ L +++L L+ G R++E L D + +
Sbjct: 36 LPKYLLAPEVSALLHYVPDLHRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLAT 95
Query: 154 IVVRGGKGGKD-----------RVVPISES--------LLSEIKRYLESRNDDSPYLFVE 194
+ R K + R+VP+S+S +++++K +E RN +
Sbjct: 96 LKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVSQLQTMVAQLKIPMERRNRRTG----R 151
Query: 195 MKRKRKDKLSPKTVWRLVKKY-------GRKAGVELTPHQLRHSFATHMLERGIDIRIIQ 247
++ R +++ +TV + + G V +TPH RHS+A HML GI ++++Q
Sbjct: 152 TEKARIWEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQ 211
Query: 248 ELLGHSNLSTTQIYTKV 264
L+GH ++S+T++YTKV
Sbjct: 212 SLMGHKSISSTEVYTKV 228
>pir||S74530 integrase-recombinase protein xerC - Synechocystis sp. (strain PCC
6803) >gi|1651754|dbj|BAA16682.1| (D90899)
integrase-recombinase protein [Synechocystis sp.]
Length = 313
Score = 69.9 bits (168), Expect = 3e-11
Identities = 67/253 (26%), Positives = 116/253 (45%), Gaps = 26/253 (10%)
Query: 37 ISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNLVIQALKAYFKF-------------- 82
I+ F H LR+ A+L K ++N+ + A+K+ +
Sbjct: 54 IAWFLSLDHFQAIAMVLRYRAELLAKDLKPATINVRLAAIKSLVNYARRVGKCQYTLEDV 113
Query: 83 EGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIINAAETLRDRLILLLLYGAGLRVSELCNL 142
EGL +E + T P + K +T+ ++ + RD I+ LL+ LR +E+C L
Sbjct: 114 EGLKAETYRDTTGVSPTSF-KQITDHITP---DSLKGKRDLAIMRLLWDNALRRAEVCGL 169
Query: 143 RVEDVNFEYGVIVVRG-GKGGKDRVVPISESLLSEIKRYLES---RNDDSPYLFVEMKRK 198
V D ++++G GK GK + + +S ++ I ++L + R + P +
Sbjct: 170 NVGDYQPTERQLLIKGKGKLGK-QAITLSAKGMALINQWLTAIGPRPKNEPLFCTLDRAT 228
Query: 199 RKDKLSPKTVWRLVKKYGRKAGVE--LTPHQLRHSFATHMLE-RGIDIRIIQELLGHSNL 255
+LS ++ LV+ AG+ ++PH++RHS T LE D R +Q+L HSNL
Sbjct: 229 FGHRLSGNAIYNLVRTSAESAGIHKVMSPHRVRHSAITAALEATNGDTRKVQKLSRHSNL 288
Query: 256 STTQIYTKVSTKH 268
+T IY +H
Sbjct: 289 NTLMIYDDNRHQH 301
>pir||A71870 integrase/recombinase (xercd family) - Helicobacter pylori (strain
J99) >gi|4155519|gb|AAD06517.1| (AE001523)
INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter
pylori J99]
Length = 331
Score = 69.5 bits (167), Expect = 4e-11
Identities = 70/286 (24%), Positives = 131/286 (45%), Gaps = 61/286 (21%)
Query: 19 YLELEGKSRNTVRMYTYYISKFFEEGHSPTARDALRFLAKLKRKGYSTRSLNLVIQALKA 78
Y ELE ++ + Y Y+ +FF+ +L + +R G+
Sbjct: 82 YRELECLVKSKMAKYVMYLRQFFD------------YLDRKRRYGF-------------- 115
Query: 79 YFKFEGLDSEAEKLKTPKMPKTLPKSLTEEEVRRIIN--------AAETLRDRLILLLLY 130
D + L K ++LP+ L +++++ + + R++ ILL++
Sbjct: 116 -------DFTLKNLAFAKTKESLPRHLNDKDLKSFLKTLLDYKPATSFEKRNKCILLIVI 168
Query: 131 GAGLRVSELCNLRVEDVNFE---YGVIVVRGGKGGKDRVVPISESLLSE-----IKRYLE 182
GLR E+ N+ ++ + E Y +++ GKG K+R I +SLL I
Sbjct: 169 LGGLRKCEVLNIELKHIQVEEQNYSILI--QGKGRKERKAYIKKSLLEPSLNAWISDDYR 226
Query: 183 SRNDDSPYLFVEMKRKRKDKLS----PKTVWRLVK-KYGRKAGVELTPHQLRHSFATHML 237
+ + YLF + K+K ++ L+ +++L + K+ ++ G L H RHSFAT +
Sbjct: 227 LKYFNGAYLFKKDKQKSQNSLTLYNFIPLIFKLAQIKHYKQYGTGL--HLFRHSFATLIY 284
Query: 238 ERGIDIRIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLVESII 283
+ D+ + LGHS+L +T+IY + +H K K A + +S+I
Sbjct: 285 QETQDLVLTSRALGHSSLLSTKIYIHTTQEHNK---KVALVFDSLI 327
>gb|AAF72940.1|AF231133_1 (AF231133) INTI1 [Pseudomonas aeruginosa]
Length = 182
Score = 69.1 bits (166), Expect = 6e-11
Identities = 59/174 (33%), Positives = 85/174 (47%), Gaps = 22/174 (12%)
Query: 11 DTIEEFATYLELEGKSRNTVRMYTYYISKFFE---EGHSPTARDA-----LRFLAKLKRK 62
D + E YL S T + Y +++ F H T + L +LA ++
Sbjct: 18 DQLRERIRYLHY---SLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKV 74
Query: 63 GYSTRSLNLVIQALKAYFKFEG--LDSEAEKLKT---PKMPKTLPKSLTEEEVRRIINAA 117
ST QAL A F G L ++ L+ P+ + LP LT +EV RI+
Sbjct: 75 SVSTHR-----QALAALLFFYGKVLCTDLPWLQETGRPRPSRRLPVVLTPDEVVRILGFL 129
Query: 118 ETLRDRLILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISE 171
E RL LLYG G+R+SE LRV+D++F++G I+VR GKG KDR + + E
Sbjct: 130 EG-EHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPE 182
>gi|10957411 integrase/recombinase XerD, putative [Deinococcus radiodurans]
>gi|7473527|pir||E75629 probable integrase/recombinase
XerD - Deinococcus radiodurans (strain R1)
>gi|6460840|gb|AAF12544.1|AE001826_13 (AE001826)
integrase/recombinase XerD, putative [Deinococcus
radiodurans]
Length = 344
Score = 68.3 bits (164), Expect = 1e-10
Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 30/269 (11%)
Query: 26 SRNTVRMYTYYISKFFEEGHS-------PTARDALRFLAKLKRKGYSTRSLNLVIQALKA 78
S +T+R Y + F P + + L+ +GY+T ++ + + A +
Sbjct: 84 SHHTIRAYRKGLDVFLGYAQQVGLQLLRPRPNHGVAYARWLEAQGYNTSTVRVRLAAARK 143
Query: 79 YF---KFEGLDSEAEKLKTPKMPKTLP-----KSLTEEEVRRIINAAETLRDRLILLLLY 130
F ++ G P +P K +E EV ++ A + L +++ILLL
Sbjct: 144 LFAALRWAGATDATPFADVRPAPDPVPRTEKRKPYSETEVEELVRAGD-LEEKVILLLGA 202
Query: 131 GAGLRVSELCNLRVEDVNF--EYGVIVVRGGKGGKDRVVPISESLLSEIKRYLESRNDDS 188
AGLRVSE+ L+ DV+ E+ ++V G K K + VP+S +L + +L + D
Sbjct: 203 HAGLRVSEIAGLQRVDVHLDGEHPYLMVTG-KHQKRQGVPLSRTLAKALSLWLSATPDLG 261
Query: 189 PYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTP---HQLRHSFATHMLERGIDIRI 245
P + S V VK + GV + H LRHS T + D+
Sbjct: 262 PRVL--------SAGSVDYVQGRVKAVCERTGVPYSRRQVHGLRHSAGTRIYSDTSDLLA 313
Query: 246 IQELLGHSNLSTTQIYTKVSTKHLKEAVK 274
+++ L H+++++++IY + + K AVK
Sbjct: 314 VRDHLRHADITSSEIYVEYARKTKAPAVK 342
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.136 0.372
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98616740
Number of Sequences: 2977
Number of extensions: 3878901
Number of successful extensions: 12290
Number of sequences better than 1.0e-10: 144
Number of HSP's better than 0.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 11949
Number of HSP's gapped (non-prelim): 173
length of query: 286
length of database: 189,106,746
effective HSP length: 59
effective length of query: 227
effective length of database: 153,796,013
effective search space: 34911694951
effective search space used: 34911694951
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)