BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0258 (PAB0258) DE:Hypothetical protein
(110 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75153 hypothetical protein PAB0258 - Pyrococcus abyssi (st... 217 4e-56
pir||H71194 hypothetical protein PH1831 - Pyrococcus horikoshii ... 163 4e-40
sp|P20297|YORB_PYRWO HYPOTHETICAL 11.3 KD PROTEIN IN GAPDH 3'REG... 119 8e-27
>pir||F75153 hypothetical protein PAB0258 - Pyrococcus abyssi (strain Orsay)
>gi|5457819|emb|CAB49309.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 110
Score = 217 bits (546), Expect = 4e-56
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MAERKISLYVMDILNAAINELKAEGIEPDIILVGPEFGKFLNESMLKMLKMKVYYIEELG 60
MAERKISLYVMDILNAAINELKAEGIEPDIILVGPEFGKFLNESMLKMLKMKVYYIEELG
Sbjct: 1 MAERKISLYVMDILNAAINELKAEGIEPDIILVGPEFGKFLNESMLKMLKMKVYYIEELG 60
Query: 61 SDAIVADSKYLGQLRKAAKRISIEPFLEEMEWEKILEELPEVKEELEEGD 110
SDAIVADSKYLGQLRKAAKRISIEPFLEEMEWEKILEELPEVKEELEEGD
Sbjct: 61 SDAIVADSKYLGQLRKAAKRISIEPFLEEMEWEKILEELPEVKEELEEGD 110
>pir||H71194 hypothetical protein PH1831 - Pyrococcus horikoshii
>gi|3258268|dbj|BAA30951.1| (AP000007) 108aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 108
Score = 163 bits (409), Expect = 4e-40
Identities = 75/105 (71%), Positives = 95/105 (90%)
Query: 3 ERKISLYVMDILNAAINELKAEGIEPDIILVGPEFGKFLNESMLKMLKMKVYYIEELGSD 62
+ +SL+++D+L + I+ELK EG EPD+ILVGPEF K+L+E M+ MLKMKVYYIEELGSD
Sbjct: 4 KNNVSLHIIDLLTSTISELKEEGFEPDLILVGPEFKKYLSEEMIGMLKMKVYYIEELGSD 63
Query: 63 AIVADSKYLGQLRKAAKRISIEPFLEEMEWEKILEELPEVKEELE 107
AI+ADSKYLGQL+KA+KRISIEP L+E+EWEK+L+ELPE+KEELE
Sbjct: 64 AIIADSKYLGQLKKASKRISIEPLLKELEWEKVLKELPEIKEELE 108
>sp|P20297|YORB_PYRWO HYPOTHETICAL 11.3 KD PROTEIN IN GAPDH 3'REGION (ORF B)
>gi|76328|pir||QQQYBW hypothetical protein B -
Pyrococcus woesei
Length = 99
Score = 119 bits (296), Expect = 8e-27
Identities = 60/100 (60%), Positives = 76/100 (76%), Gaps = 4/100 (4%)
Query: 1 MAERKISLYVMDILNAAINELKAEGIEPDIILVGPEFGKFLNESMLKMLKMKVYYIEELG 60
M I V +I+ AAI EL+ +G EPDIIL GP F ++L E + ++KVY IEELG
Sbjct: 1 MENNNIMSQVKEIIEAAIKELEDDGFEPDIILAGPIFIRYLPEDV----RLKVYEIEELG 56
Query: 61 SDAIVADSKYLGQLRKAAKRISIEPFLEEMEWEKILEELP 100
SDAI+ADSKYLGQ++KAAKRISI+P L+E EWEKI+EE+P
Sbjct: 57 SDAIIADSKYLGQIKKAAKRISIDPLLQEKEWEKIIEEIP 96
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.314 0.137 0.366
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38065307
Number of Sequences: 2977
Number of extensions: 1371494
Number of successful extensions: 4356
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4352
Number of HSP's gapped (non-prelim): 3
length of query: 110
length of database: 189,106,746
effective HSP length: 57
effective length of query: 53
effective length of database: 154,992,987
effective search space: 8214628311
effective search space used: 8214628311
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 159 (66.3 bits)