BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0262 (PAB0262) DE:Hypothetical protein
         (486 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75154 hypothetical protein PAB0262 - Pyrococcus abyssi (st...   975  0.0

>pir||C75154 hypothetical protein PAB0262 - Pyrococcus abyssi (strain Orsay)
           >gi|5457824|emb|CAB49314.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 486
           
 Score =  975 bits (2492), Expect = 0.0
 Identities = 486/486 (100%), Positives = 486/486 (100%)

Query: 1   MEIKKRIRVILVISVLVVMFGSLVNAYYGGKPEKTGLVIELPNPDRVLGRNVLASFLIPK 60
           MEIKKRIRVILVISVLVVMFGSLVNAYYGGKPEKTGLVIELPNPDRVLGRNVLASFLIPK
Sbjct: 1   MEIKKRIRVILVISVLVVMFGSLVNAYYGGKPEKTGLVIELPNPDRVLGRNVLASFLIPK 60

Query: 61  YEYYIQVQLLTPNGFRTIYEGESRGKVLIPSSSFFQIKSNKLKDVNPGVIIDLWIVNFDT 120
           YEYYIQVQLLTPNGFRTIYEGESRGKVLIPSSSFFQIKSNKLKDVNPGVIIDLWIVNFDT
Sbjct: 61  YEYYIQVQLLTPNGFRTIYEGESRGKVLIPSSSFFQIKSNKLKDVNPGVIIDLWIVNFDT 120

Query: 121 GESYEAGTFSLTITGDAVKSIQRFELNLSRENLVRLPKLPLNIVKSKKKSPITPTRGFFA 180
           GESYEAGTFSLTITGDAVKSIQRFELNLSRENLVRLPKLPLNIVKSKKKSPITPTRGFFA
Sbjct: 121 GESYEAGTFSLTITGDAVKSIQRFELNLSRENLVRLPKLPLNIVKSKKKSPITPTRGFFA 180

Query: 181 GYRWRTKKEYLAGQMYLPILILDNRLGRASVAGAYKVEAVRSSSSSSGAVLGFSTTIIRG 240
           GYRWRTKKEYLAGQMYLPILILDNRLGRASVAGAYKVEAVRSSSSSSGAVLGFSTTIIRG
Sbjct: 181 GYRWRTKKEYLAGQMYLPILILDNRLGRASVAGAYKVEAVRSSSSSSGAVLGFSTTIIRG 240

Query: 241 SKLSSKSEISIEKGLASGEIHVELEKGNEFIKTVIDGEVKNVKPGQIGVIMIKGTPYIAL 300
           SKLSSKSEISIEKGLASGEIHVELEKGNEFIKTVIDGEVKNVKPGQIGVIMIKGTPYIAL
Sbjct: 241 SKLSSKSEISIEKGLASGEIHVELEKGNEFIKTVIDGEVKNVKPGQIGVIMIKGTPYIAL 300

Query: 301 QVLQKCYVDEFRRKHCFDTDEERVLITVTDIKREYNPQENAYFVETISYLDPPRSVYPVD 360
           QVLQKCYVDEFRRKHCFDTDEERVLITVTDIKREYNPQENAYFVETISYLDPPRSVYPVD
Sbjct: 301 QVLQKCYVDEFRRKHCFDTDEERVLITVTDIKREYNPQENAYFVETISYLDPPRSVYPVD 360

Query: 361 KMDELINDNKGCLRILTTLYGEQQHGRSFYIENFINQWTTYSNTYIPVLAIVIALQPEAW 420
           KMDELINDNKGCLRILTTLYGEQQHGRSFYIENFINQWTTYSNTYIPVLAIVIALQPEAW
Sbjct: 361 KMDELINDNKGCLRILTTLYGEQQHGRSFYIENFINQWTTYSNTYIPVLAIVIALQPEAW 420

Query: 421 PAFLIGLSAVGGIYITNEGHELVYGSFTIKDESPDKKTIVKYLGLKYSIRDTMHFTKFPF 480
           PAFLIGLSAVGGIYITNEGHELVYGSFTIKDESPDKKTIVKYLGLKYSIRDTMHFTKFPF
Sbjct: 421 PAFLIGLSAVGGIYITNEGHELVYGSFTIKDESPDKKTIVKYLGLKYSIRDTMHFTKFPF 480

Query: 481 AYLRFE 486
           AYLRFE
Sbjct: 481 AYLRFE 486


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.402 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184781869
Number of Sequences: 2977
Number of extensions: 8140277
Number of successful extensions: 25541
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25540
Number of HSP's gapped (non-prelim): 1
length of query: 486
length of database: 189,106,746
effective HSP length: 57
effective length of query: 429
effective length of database: 154,992,987
effective search space: 66491991423
effective search space used: 66491991423
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 167 (69.5 bits)