BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0263 (PAB0263) DE:Hypothetical protein
(204 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75154 hypothetical protein PAB0263 - Pyrococcus abyssi (st... 405 e-112
pir||H71195 hypothetical protein PH1839 - Pyrococcus horikoshii ... 390 e-108
pir||H70375 conserved hypothetical protein aq_880 - Aquifex aeol... 172 3e-42
pir||F64418 hypothetical protein MJ0950 - Methanococcus jannasch... 132 3e-30
pir||D69130 conserved hypothetical protein MTH243 - Methanobacte... 125 4e-28
gi|11499520 conserved hypothetical protein [Archaeoglobus fulgid... 124 8e-28
pir||G72534 hypothetical protein APE1564 - Aeropyrum pernix (str... 103 2e-21
>pir||D75154 hypothetical protein PAB0263 - Pyrococcus abyssi (strain Orsay)
>gi|5457825|emb|CAB49315.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 204
Score = 405 bits (1030), Expect = e-112
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MIRFVLDTSIFVNPDVRKKFGETPTKAMKTFLKYAESLFGHVEFYMPPGIYREVMHFVEE 60
MIRFVLDTSIFVNPDVRKKFGETPTKAMKTFLKYAESLFGHVEFYMPPGIYREVMHFVEE
Sbjct: 1 MIRFVLDTSIFVNPDVRKKFGETPTKAMKTFLKYAESLFGHVEFYMPPGIYREVMHFVEE 60
Query: 61 EEVSPDIELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTSNV 120
EEVSPDIELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTSNV
Sbjct: 61 EEVSPDIELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTSNV 120
Query: 121 DKIIQKLRRNYRKALREGILDSKEDFELILLAKELDGIIVSADVGILTWAEKMGIKWVDA 180
DKIIQKLRRNYRKALREGILDSKEDFELILLAKELDGIIVSADVGILTWAEKMGIKWVDA
Sbjct: 121 DKIIQKLRRNYRKALREGILDSKEDFELILLAKELDGIIVSADVGILTWAEKMGIKWVDA 180
Query: 181 FKFKEVLEELVEKLKRSESEKERK 204
FKFKEVLEELVEKLKRSESEKERK
Sbjct: 181 FKFKEVLEELVEKLKRSESEKERK 204
>pir||H71195 hypothetical protein PH1839 - Pyrococcus horikoshii
>gi|3258276|dbj|BAA30959.1| (AP000007) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 390 bits (991), Expect = e-108
Identities = 195/204 (95%), Positives = 200/204 (97%)
Query: 1 MIRFVLDTSIFVNPDVRKKFGETPTKAMKTFLKYAESLFGHVEFYMPPGIYREVMHFVEE 60
MI+FVLDTSIFVNPDVRKKFGETPT+AMKTFL YAE+LFG VEFYMPPGIYRE+MHFVEE
Sbjct: 18 MIKFVLDTSIFVNPDVRKKFGETPTEAMKTFLHYAENLFGKVEFYMPPGIYRELMHFVEE 77
Query: 61 EEVSPDIELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTSNV 120
EEVSPDIELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTSNV
Sbjct: 78 EEVSPDIELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTSNV 137
Query: 121 DKIIQKLRRNYRKALREGILDSKEDFELILLAKELDGIIVSADVGILTWAEKMGIKWVDA 180
DKIIQKLRRNYRKALREGILDSKEDFELILLAKE+DGIIVSADVGILTWAEKMGIKWVDA
Sbjct: 138 DKIIQKLRRNYRKALREGILDSKEDFELILLAKEIDGIIVSADVGILTWAEKMGIKWVDA 197
Query: 181 FKFKEVLEELVEKLKRSESEKERK 204
FKFKEVL ELVEK KRSESEKERK
Sbjct: 198 FKFKEVLSELVEKFKRSESEKERK 221
>pir||H70375 conserved hypothetical protein aq_880 - Aquifex aeolicus
>gi|2983420|gb|AAC07003.1| (AE000712) hypothetical
protein [Aquifex aeolicus]
Length = 192
Score = 172 bits (431), Expect = 3e-42
Identities = 87/188 (46%), Positives = 127/188 (67%), Gaps = 3/188 (1%)
Query: 4 FVLDTSIFVNPDVRKKFGETPTKAMKTFLKYAESLFGHVEFYMPPGIYREVMHFVEEEEV 63
FVLDTS+F NP++ + F E AM+TF+ A L EFYMP +Y E+ ++ E+
Sbjct: 4 FVLDTSVFTNPEIYRTFEEDQRGAMETFIHLA--LNSRAEFYMPTSVYTEMRKIMDVGEL 61
Query: 64 SPDIELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRESVIDTSNVDKI 123
+ E+ + + P + +PA +YE IE++R R++KGLR+AE+ RE+ +V K+
Sbjct: 62 WAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGLRIAEEHTREAS-GCEDVGKL 120
Query: 124 IQKLRRNYRKALREGILDSKEDFELILLAKELDGIIVSADVGILTWAEKMGIKWVDAFKF 183
I +LR YR+ALR+GILDSKED +++LLA ELDG++VSAD G+ TWA+K+GIK +D F
Sbjct: 121 IARLREKYREALRQGILDSKEDVDVLLLAYELDGVLVSADEGLRTWADKIGIKLIDPKNF 180
Query: 184 KEVLEELV 191
K +LE LV
Sbjct: 181 KNILESLV 188
>pir||F64418 hypothetical protein MJ0950 - Methanococcus jannaschii
>gi|1591617|gb|AAB98951.1| (U67538) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 233
Score = 132 bits (329), Expect = 3e-30
Identities = 77/217 (35%), Positives = 121/217 (55%), Gaps = 29/217 (13%)
Query: 3 RFVLDTSIFVNPDVRKKFG-----ETPTKAMKTFLKYAESLFGHVEFYMP-PGIYREVMH 56
RF LDTS F P VRK G E K M + L ++ ++P P +Y E+M
Sbjct: 9 RFCLDTSAFTEPSVRKALGVKTVTELTDKVMDLIAEARIKL--NISCHIPYPTVYNELMG 66
Query: 57 FVEEEEVSPDI----ELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRE 112
F+E E D+ + +++KK PN ++IKIP+ + YE ++D+R R++KG+R+ E+ + +
Sbjct: 67 FLENENCPRDVIVKVDTWLVKKTPNRYEIKIPSEIFYEYVKDLRERINKGMRIGEEHIIK 126
Query: 113 SV-----------------IDTSNVDKIIQKLRRNYRKALREGILDSKEDFELILLAKEL 155
+ I + K I R YR ALR G LDS D +++LLAKEL
Sbjct: 127 ATDMVYELSKKHPEMGKNEIINKVLSKTINTFRNKYRSALRVGTLDSAPDLDVLLLAKEL 186
Query: 156 DGIIVSADVGILTWAEKMGIKWVDAFKFKEVLEELVE 192
D +V++D GI WA+++G+++VDA F +LEE ++
Sbjct: 187 DAAVVASDGGIEKWAQRLGLRFVDASDFPFMLEEYLK 223
>pir||D69130 conserved hypothetical protein MTH243 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621292|gb|AAB84749.1| (AE000811) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 220
Score = 125 bits (311), Expect = 4e-28
Identities = 72/214 (33%), Positives = 125/214 (57%), Gaps = 26/214 (12%)
Query: 3 RFVLDTSIFVNPDVRKKFGE-----TPTKAMKTFLKYAESLFGHVEFYMPPGIYREVMHF 57
RFVLDT+ F + +R+ G+ + + + + L ++ +MPP Y+E +
Sbjct: 6 RFVLDTTAFTDNQLRELLGDGDLNLSVDRMLDLIARSRIKL--NISCHMPPITYKEFTDY 63
Query: 58 VEE----EEVSPDIELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAE------ 107
+ EE E +I+KK PN +D +IP+ + YE + DIR R++KGLR++E
Sbjct: 64 MTRYDCPEETLIKAETWIVKKTPNRYDTQIPSQIFYEYVHDIRERMNKGLRISETLLWEA 123
Query: 108 ---------KAVRESVIDTSNVDKIIQKLRRNYRKALREGILDSKEDFELILLAKELDGI 158
+ V+++ I++ + K I+ LR+ YR ALR+G LDS D +++LLAKEL
Sbjct: 124 GIQSIIMASRDVKKTEIESEVLGKAIKDLRKKYRSALRKGTLDSAPDLDVLLLAKELGAG 183
Query: 159 IVSADVGILTWAEKMGIKWVDAFKFKEVLEELVE 192
+V+AD GI WAE++G+++++A F ++L+E ++
Sbjct: 184 VVAADDGIRVWAERLGLRFLNATSFPKMLKEYLK 217
>gi|11499520 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483183|pir||G69491 conserved hypothetical protein
AF1936 - Archaeoglobus fulgidus
>gi|2648608|gb|AAB89319.1| (AE000970) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 227
Score = 124 bits (308), Expect = 8e-28
Identities = 70/210 (33%), Positives = 125/210 (59%), Gaps = 22/210 (10%)
Query: 3 RFVLDTSIFVNPDVRKKFG-----ETPTKAMKTFLKYAESLFGHVEFYMP-PGIYREVMH 56
RFVLDT+ + +R K G E+ + + L + Y+P P +Y E+
Sbjct: 4 RFVLDTTAITDAGLRIKEGYESLCESAAEVLDLIALARLKL--DISCYIPYPSVYTELTS 61
Query: 57 FVE----EEEVSPDIELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRE 112
F++ +EE+ ++ +++KK PN +++KIPA + YE I +R+++++G R+AE+ + E
Sbjct: 62 FLKRYGCDEEIFTKLDTWLVKKTPNRYEVKIPAAIFYEYIITVRQKMNRGRRLAEEYILE 121
Query: 113 SVIDTSNVDK----------IIQKLRRNYRKALREGILDSKEDFELILLAKELDGIIVSA 162
S T+ ++ +I K R YR +R+GILDS D +++LLAKEL+ +VS+
Sbjct: 122 SSAITAKLEDKSKIEEEIGALISKFRDKYRAVMRQGILDSAPDLDVLLLAKELEAGVVSS 181
Query: 163 DVGILTWAEKMGIKWVDAFKFKEVLEELVE 192
D GI W+E++G+++V+A KF +L+E ++
Sbjct: 182 DAGIRKWSERLGLRFVEAAKFPRMLKEYLK 211
>pir||G72534 hypothetical protein APE1564 - Aeropyrum pernix (strain K1)
>gi|5105251|dbj|BAA80564.1| (AP000062) 217aa long
hypothetical protein [Aeropyrum pernix]
Length = 217
Score = 103 bits (254), Expect = 2e-21
Identities = 64/202 (31%), Positives = 106/202 (51%), Gaps = 10/202 (4%)
Query: 5 VLDTSIFVNPDVRKKFG----ETPTKAMKTFLKYAESLFGHVEFYMPPGIYREVMHFVEE 60
V DT++F + +R+ G E + M L A + + Y+ P + E+ F+
Sbjct: 17 VADTTMFTDAKLREVLGARSLEEAARIMARILARASRM--GLTVYITPSVRAEIERFMLG 74
Query: 61 EEVSPD----IELYIIKKPPNVHDIKIPAFVVYELIEDIRRRVDKGLRVAEKAVRESVID 116
V P + ++ KPP H++++PA + +E +R R+DKGLRVAE VR ++
Sbjct: 75 NGVHPTTIARLMAWVRVKPPTTHELRLPAAMFRRYVETVRARLDKGLRVAEDHVRRALRS 134
Query: 117 TSNVDKIIQKLRRNYRKALREGILDSKEDFELILLAKELDGIIVSADVGILTWAEKMGIK 176
I++ LR YR+ R+G+LDS ED + +LLA EL IV++D G+ AE +G+
Sbjct: 135 RDEEGDIVRSLREKYREYTRKGMLDSVEDVDTLLLALELGAAIVTSDEGLRRAAEDLGLT 194
Query: 177 WVDAFKFKEVLEELVEKLKRSE 198
+ + E + L E++K E
Sbjct: 195 VLTPVELLEYILALEEEVKSVE 216
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74827960
Number of Sequences: 2977
Number of extensions: 3104219
Number of successful extensions: 9029
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9013
Number of HSP's gapped (non-prelim): 8
length of query: 204
length of database: 189,106,746
effective HSP length: 56
effective length of query: 148
effective length of database: 155,591,474
effective search space: 23027538152
effective search space used: 23027538152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)