BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0264 384705 385082 126 !not a gene!
         (126 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71196 hypothetical protein PH1841 - Pyrococcus horikoshii ...   132  2e-30
pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (str...    90  6e-18

>pir||C71196 hypothetical protein PH1841 - Pyrococcus horikoshii
           >gi|3258279|dbj|BAA30962.1| (AP000007) 141aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 141
           
 Score =  132 bits (328), Expect = 2e-30
 Identities = 70/93 (75%), Positives = 78/93 (83%)

Query: 34  IALSIILVNLPSLLKSSSILSTSSFLKSGSIGIPLVCIWSISFLPCLSGTPTSISLSNLP 93
           +ALS+  +N PS L  S ILSTSSFLKSGSIGIPLV I SISFLPCLSGTPTSISLS  P
Sbjct: 1   MALSMTSLNFPSFLSPSRILSTSSFLKSGSIGIPLVWICSISFLPCLSGTPTSISLSKRP 60

Query: 94  GLLRAGSMASGLLVAPMTMTLPLLLRPSINANS 126
           GLL+AGS ASGLLVAP+T+TLPL  +PSI A+S
Sbjct: 61  GLLKAGSKASGLLVAPITITLPLPFKPSIKASS 93


>pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (strain K1)
           >gi|5106180|dbj|BAA81491.1| (AP000064) 353aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 353
           
 Score = 90.5 bits (221), Expect = 6e-18
 Identities = 56/102 (54%), Positives = 66/102 (63%)

Query: 25  SSLLLLTSSIALSIILVNLPSLLKSSSILSTSSFLKSGSIGIPLVCIWSISFLPCLSGTP 84
           S   L  + +A S+      + +K   I ++ S   S + GI LVCI SIS LPCLSG  
Sbjct: 204 SGRYLRRAYMAASLARAARSAPVKPLVISASFSRSMSSARGICLVCICSISSLPCLSGKG 263

Query: 85  TSISLSNLPGLLRAGSMASGLLVAPMTMTLPLLLRPSINANS 126
           TSISLSNLPGLLRAGSMA GLLVA MT+TLPL   PS+ A S
Sbjct: 264 TSISLSNLPGLLRAGSMALGLLVAAMTITLPLASSPSMRARS 305


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.132    0.360 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39679093
Number of Sequences: 2977
Number of extensions: 1462567
Number of successful extensions: 5630
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5627
Number of HSP's gapped (non-prelim): 3
length of query: 126
length of database: 189,106,746
effective HSP length: 58
effective length of query: 68
effective length of database: 154,394,500
effective search space: 10498826000
effective search space used: 10498826000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 160 (66.7 bits)