BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0269 (PAB0269) DE:METHLYTRANSFERASE
         (205 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75155 methlytransferase PAB0269 - Pyrococcus abyssi (strai...   427  e-119
pir||C69980 hypothetical protein yrrT - Bacillus subtilis >gi|26...   102  2e-21
gb|AAG19631.1| (AE005051) Vng1280c [Halobacterium sp. NRC-1]           71  8e-12

>pir||C75155 methlytransferase PAB0269 - Pyrococcus abyssi (strain Orsay)
           >gi|5457832|emb|CAB49322.1| (AJ248284) METHLYTRANSFERASE
           [Pyrococcus abyssi]
           Length = 205
           
 Score =  427 bits (1085), Expect = e-119
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MSELEWDFDSWVRTYDEDVEREDWIHADYEEVLKLVAERVGGTVVDIGCGTGNILCFLKC 60
           MSELEWDFDSWVRTYDEDVEREDWIHADYEEVLKLVAERVGGTVVDIGCGTGNILCFLKC
Sbjct: 1   MSELEWDFDSWVRTYDEDVEREDWIHADYEEVLKLVAERVGGTVVDIGCGTGNILCFLKC 60

Query: 61  ERYIGVEPSRGMRAKFKEKHGFEPLDGHFLSIPLLDGTADAVISTYTFHHVPDEEKEDAI 120
           ERYIGVEPSRGMRAKFKEKHGFEPLDGHFLSIPLLDGTADAVISTYTFHHVPDEEKEDAI
Sbjct: 61  ERYIGVEPSRGMRAKFKEKHGFEPLDGHFLSIPLLDGTADAVISTYTFHHVPDEEKEDAI 120

Query: 121 KEMLRVLNPGGRIVIADVMFESEKEELRIGKEDGTLDEVLDEYFATVEGLKELCERLSLQ 180
           KEMLRVLNPGGRIVIADVMFESEKEELRIGKEDGTLDEVLDEYFATVEGLKELCERLSLQ
Sbjct: 121 KEMLRVLNPGGRIVIADVMFESEKEELRIGKEDGTLDEVLDEYFATVEGLKELCERLSLQ 180

Query: 181 CNFKRINRYVWIVEMLKPAQSLKRS 205
           CNFKRINRYVWIVEMLKPAQSLKRS
Sbjct: 181 CNFKRINRYVWIVEMLKPAQSLKRS 205


>pir||C69980 hypothetical protein yrrT - Bacillus subtilis
           >gi|2635174|emb|CAB14670.1| (Z99117) yrrT [Bacillus
           subtilis]
           Length = 213
           
 Score =  102 bits (253), Expect = 2e-21
 Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 14/204 (6%)

Query: 8   FDSWVRTYDEDVEREDWIHAD----YEEVLKLVAERVGGTVVDIGCGTGNILCFL--KCE 61
           F+ W  TYD+ V+  D  + +    Y+ +L  +  + G  V++ G GTGN+   L    +
Sbjct: 9   FEDWAATYDQTVQGLDIQYKEAFRGYDHILDAIVRKSGTHVLEFGPGTGNLTAKLLDAGK 68

Query: 62  RYIGVEPSRGMRAKFKEKHG--FEPLDGHFLSIPLLDGTADAVISTYTFHHVPDEEKEDA 119
              G+EPS  MR    +K     E +DG FL+ P     AD ++S+Y FHH+ DEEK  A
Sbjct: 69  TVFGIEPSPAMRKLASDKLSGRTEIVDGDFLTFPEPPFQADTIVSSYAFHHLTDEEKRAA 128

Query: 120 IKEMLRVLNPGGRIVIADVMFESE---KEELRIGKEDG---TLDEVLDEYFATVEGLKEL 173
           IK+  + L+   +IV AD +FE+    ++ +   +  G     +++  E++ T++ LKE+
Sbjct: 129 IKQYGKYLHLHDKIVFADTVFENAQAYQQAIDKARSQGFYQLANDLETEHYPTLDALKEM 188

Query: 174 CERLSLQCNFKRINRYVWIVEMLK 197
                    F + N +VWI+E +K
Sbjct: 189 FTAEGFAVRFTQQNDFVWIMEAIK 212


>gb|AAG19631.1| (AE005051) Vng1280c [Halobacterium sp. NRC-1]
           Length = 200
           
 Score = 71.4 bits (172), Expect = 8e-12
 Identities = 57/144 (39%), Positives = 73/144 (50%), Gaps = 21/144 (14%)

Query: 8   FDSWVRTYDEDVEREDWIHADYEEVLKLVAER--VGG--TVVDIGCGTGNILCFLKCE-- 61
           FD     YD+D   E      Y E + LV E   VGG  TV+D+GCGTG I   L  +  
Sbjct: 12  FDDVAAAYDDDQTPE------YNECVALVLEHADVGGADTVLDLGCGTGAIALGLAADAG 65

Query: 62  RYIGVEPSRGMRAKFKEKHGFEPLD------GHFLSIPLLDGTADAVISTYTFHHVPDEE 115
           R +G + S GM  + +EK     +D      G F   P  DG AD V+S +  HH+ D E
Sbjct: 66  RVVGRDISDGMLTQAREKATTRGVDNVAFDTGRFRE-PNYDGDADVVVSNFAMHHLSDAE 124

Query: 116 KEDAIKEMLRVLNPGGRIVIADVM 139
           K  AI + +  LNP  RIV+ DVM
Sbjct: 125 KRSAI-DTIAGLNP-HRIVLGDVM 146


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.424 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85004009
Number of Sequences: 2977
Number of extensions: 3691935
Number of successful extensions: 10327
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10323
Number of HSP's gapped (non-prelim): 3
length of query: 205
length of database: 189,106,746
effective HSP length: 51
effective length of query: 154
effective length of database: 158,583,909
effective search space: 24421921986
effective search space used: 24421921986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)