BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0274 (PAB0274) DE:Hypothetical protein
         (249 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75156 hypothetical protein PAB0274 - Pyrococcus abyssi (st...   500  e-141

>pir||C75156 hypothetical protein PAB0274 - Pyrococcus abyssi (strain Orsay)
           >gi|5457840|emb|CAB49330.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 249
           
 Score =  500 bits (1274), Expect = e-141
 Identities = 249/249 (100%), Positives = 249/249 (100%)

Query: 1   MERGKAIVLSAIGIEIMTSSMVLLYKAMGWVPLGILTLLLLYLVIRKLGIQREELGLGGR 60
           MERGKAIVLSAIGIEIMTSSMVLLYKAMGWVPLGILTLLLLYLVIRKLGIQREELGLGGR
Sbjct: 1   MERGKAIVLSAIGIEIMTSSMVLLYKAMGWVPLGILTLLLLYLVIRKLGIQREELGLGGR 60

Query: 61  LNLKVHVLLPLSFMLLNLTWILPFGVGLNTFGKPMKIVLLIYLVLLIKYLIFVALYEEIL 120
           LNLKVHVLLPLSFMLLNLTWILPFGVGLNTFGKPMKIVLLIYLVLLIKYLIFVALYEEIL
Sbjct: 61  LNLKVHVLLPLSFMLLNLTWILPFGVGLNTFGKPMKIVLLIYLVLLIKYLIFVALYEEIL 120

Query: 121 FRGLMQRGFELWKGPKFAIIATTILFTLGHTVVRFSLQPTFPNFWRLYNPFLASLVYSIY 180
           FRGLMQRGFELWKGPKFAIIATTILFTLGHTVVRFSLQPTFPNFWRLYNPFLASLVYSIY
Sbjct: 121 FRGLMQRGFELWKGPKFAIIATTILFTLGHTVVRFSLQPTFPNFWRLYNPFLASLVYSIY 180

Query: 181 RWRLRRIEGLILAHGLGDFIDRILTVENADWLLGTFEGHVYMVLAYTLVMAVQGYAYMKI 240
           RWRLRRIEGLILAHGLGDFIDRILTVENADWLLGTFEGHVYMVLAYTLVMAVQGYAYMKI
Sbjct: 181 RWRLRRIEGLILAHGLGDFIDRILTVENADWLLGTFEGHVYMVLAYTLVMAVQGYAYMKI 240

Query: 241 PNSEMMGGR 249
           PNSEMMGGR
Sbjct: 241 PNSEMMGGR 249


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.331    0.149    0.458 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89693746
Number of Sequences: 2977
Number of extensions: 3710088
Number of successful extensions: 10787
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10786
Number of HSP's gapped (non-prelim): 1
length of query: 249
length of database: 189,106,746
effective HSP length: 48
effective length of query: 201
effective length of database: 160,379,370
effective search space: 32236253370
effective search space used: 32236253370
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 164 (68.3 bits)