BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0276 (PAB0276) DE:Hypothetical protein
         (157 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75156 hypothetical protein PAB0276 - Pyrococcus abyssi (st...   319  1e-86
pir||D72305 hypothetical protein - Thermotoga maritima (strain M...   230  6e-60

>pir||E75156 hypothetical protein PAB0276 - Pyrococcus abyssi (strain Orsay)
           >gi|5457842|emb|CAB49332.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 157
           
 Score =  319 bits (809), Expect = 1e-86
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MIPYAHLKVLRKLYERLKDSNVNWVVTGSLGFALQGVPVEPHDIDIQTDKEGAYEIERLF 60
           MIPYAHLKVLRKLYERLKDSNVNWVVTGSLGFALQGVPVEPHDIDIQTDKEGAYEIERLF
Sbjct: 1   MIPYAHLKVLRKLYERLKDSNVNWVVTGSLGFALQGVPVEPHDIDIQTDKEGAYEIERLF 60

Query: 61  SEFVVEPVRFKESEIIRSHFGVLTIDGIKVEIMGDIQKKVEGKWEPPVDINRYKRFVQIE 120
           SEFVVEPVRFKESEIIRSHFGVLTIDGIKVEIMGDIQKKVEGKWEPPVDINRYKRFVQIE
Sbjct: 61  SEFVVEPVRFKESEIIRSHFGVLTIDGIKVEIMGDIQKKVEGKWEPPVDINRYKRFVQIE 120

Query: 121 GMKIPVLDLEYEYQAYLKLGRIKKAEMLKKFLEQREK 157
           GMKIPVLDLEYEYQAYLKLGRIKKAEMLKKFLEQREK
Sbjct: 121 GMKIPVLDLEYEYQAYLKLGRIKKAEMLKKFLEQREK 157


>pir||D72305 hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981552|gb|AAD36089.1|AE001763_1 (AE001763)
           hypothetical protein [Thermotoga maritima]
           Length = 158
           
 Score =  230 bits (581), Expect = 6e-60
 Identities = 113/157 (71%), Positives = 134/157 (84%), Gaps = 1/157 (0%)

Query: 1   MIPYAHLKVLRKLYERLKDSNVNWVVTGSLGFALQGVPVEPHDIDIQTDKEGAYEIERLF 60
           MI   +L+VLRK+Y+RLK+  VNWVVTGSL FALQGVPVE HDIDIQTD+EGAYEIER+F
Sbjct: 1   MIRPEYLRVLRKIYDRLKNEKVNWVVTGSLSFALQGVPVEVHDIDIQTDEEGAYEIERIF 60

Query: 61  SEFVVEPVRFKESEIIRSHFGVLTIDGIKVEIMGDIQKKVE-GKWEPPVDINRYKRFVQI 119
           SEFV + VRF  +E I SHFG L IDGIKVEIMGDI+K++E G WE PVD+N+YKRFV+ 
Sbjct: 61  SEFVSKKVRFSSTEKICSHFGELIIDGIKVEIMGDIRKRLEDGTWEDPVDLNKYKRFVET 120

Query: 120 EGMKIPVLDLEYEYQAYLKLGRIKKAEMLKKFLEQRE 156
            GMKIPVL LEYEYQAYLKLGR++KAE L+K+L +R+
Sbjct: 121 HGMKIPVLSLEYEYQAYLKLGRVEKAETLRKWLNERK 157


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.142    0.408 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57429208
Number of Sequences: 2977
Number of extensions: 2309352
Number of successful extensions: 5449
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5446
Number of HSP's gapped (non-prelim): 2
length of query: 157
length of database: 189,106,746
effective HSP length: 52
effective length of query: 105
effective length of database: 157,985,422
effective search space: 16588469310
effective search space used: 16588469310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)