BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0277 (PAB0277) DE:Hypothetical protein
         (226 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75156 hypothetical protein PAB0277 - Pyrococcus abyssi (st...   473  e-133

>pir||G75156 hypothetical protein PAB0277 - Pyrococcus abyssi (strain Orsay)
           >gi|5457844|emb|CAB49334.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 226
           
 Score =  473 bits (1205), Expect = e-133
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MKMRIALVPMHVRVGNFEYNWKELNRRFIEALSYNPDILVFPEYCLTGFREWDFSGASLY 60
           MKMRIALVPMHVRVGNFEYNWKELNRRFIEALSYNPDILVFPEYCLTGFREWDFSGASLY
Sbjct: 1   MKMRIALVPMHVRVGNFEYNWKELNRRFIEALSYNPDILVFPEYCLTGFREWDFSGASLY 60

Query: 61  GEIVERVSKLARENSVYVIFGLLEPYKSCVYNSALLLDRNGEVILKHRKFQEPMKFCTGN 120
           GEIVERVSKLARENSVYVIFGLLEPYKSCVYNSALLLDRNGEVILKHRKFQEPMKFCTGN
Sbjct: 61  GEIVERVSKLARENSVYVIFGLLEPYKSCVYNSALLLDRNGEVILKHRKFQEPMKFCTGN 120

Query: 121 TVKTARTEFGKVAIIICGDLYNKRILKWVKRKRPDYIFVPMEYSPDYGELNEDDFKAMSE 180
           TVKTARTEFGKVAIIICGDLYNKRILKWVKRKRPDYIFVPMEYSPDYGELNEDDFKAMSE
Sbjct: 121 TVKTARTEFGKVAIIICGDLYNKRILKWVKRKRPDYIFVPMEYSPDYGELNEDDFKAMSE 180

Query: 181 RVKLLNARTFIVNSYPPGGAWVFDGNGDLLAMTRGQKTLIWDEANV 226
           RVKLLNARTFIVNSYPPGGAWVFDGNGDLLAMTRGQKTLIWDEANV
Sbjct: 181 RVKLLNARTFIVNSYPPGGAWVFDGNGDLLAMTRGQKTLIWDEANV 226


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.141    0.438 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91965874
Number of Sequences: 2977
Number of extensions: 3835609
Number of successful extensions: 7752
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7751
Number of HSP's gapped (non-prelim): 1
length of query: 226
length of database: 189,106,746
effective HSP length: 50
effective length of query: 176
effective length of database: 159,182,396
effective search space: 28016101696
effective search space used: 28016101696
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)