BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0278 (PAB0278) DE:fragment of methionyl-tRNA synthetase
(109 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75156 methionine--tRNA ligase truncated homolog PAB0278 [i... 222 7e-58
pir||F71453 methionine--tRNA ligase truncated homolog PH0285 [im... 196 9e-50
gi|11499048 methionyl-tRNA synthetase (metS) [Archaeoglobus fulg... 115 2e-25
sp|Q58659|SYM_METJA METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA ... 105 2e-22
emb|CAC12407.1| (AL445067) fragment of probable methionine--tRNA... 100 5e-21
sp|O33925|SYM_THEMA METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA ... 99 1e-20
pir||F70338 methionine--tRNA ligase (EC 6.1.1.10) beta - Aquifex... 96 9e-20
pir||H72655 protein secretion chaperonin APE0675 [similarity] - ... 96 2e-19
pir||C75395 methionyl-tRNA synthetase - Deinococcus radiodurans ... 95 2e-19
gb|AAK40936.1| Methionyl-tRNA synthetase N-term homolog (metS-li... 94 6e-19
emb|CAB57675.1| (Y18930) homolog of methionyl-tRNA synthetase [S... 94 6e-19
sp|P23395|SYM_THETH METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA ... 90 9e-18
sp|P23920|SYM_BACST METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA ... 89 2e-17
sp|P37465|SYM_BACSU METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA ... 89 2e-17
sp|O58721|SYM_PYRHO METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA ... 85 2e-16
sp|O26687|SYM_METTH METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA ... 82 3e-15
sp|Q9ZKG9|SYM_HELPJ METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA ... 82 3e-15
sp|P56127|SYM_HELPY METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA ... 81 4e-15
dbj|BAB03772.1| (AP001507) methionyl-tRNA synthetase [Bacillus h... 79 1e-14
pir||A81246 methionyl-tRNA synthetase NMB0030 [imported] - Neiss... 78 2e-14
pir||G82022 methionine--tRNA ligase (EC 6.1.1.10) NMA0275 [impor... 78 2e-14
sp|P43828|SYM_HAEIN METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA ... 76 1e-13
pir||B75074 methionyl-tRNA synthetase (mets) PAB2364 - Pyrococcu... 76 1e-13
pir||D82249 methionyl-tRNA synthetase VC1036 [imported] - Vibrio... 73 1e-12
gb|AAG18903.1| (AE004992) methionine-tRNA synthetase; MetS [Halo... 69 1e-11
pir||C83210 methionyl-tRNA synthetase PA3482 [imported] - Pseudo... 67 7e-11
sp|P42589|YGJH_ECOLI HYPOTHETICAL 12.3 KD PROTEIN IN ILEX-EBGR I... 66 1e-10
gb|AAC99620.1| (AF040700) methionyl-tRNA synthetase [Oryza sativa] 66 1e-10
>pir||H75156 methionine--tRNA ligase truncated homolog PAB0278 [imported] -
Pyrococcus abyssi (strain Orsay)
>gi|5457845|emb|CAB49335.1| (AJ248284) fragment of
methionyl-tRNA synthetase [Pyrococcus abyssi]
Length = 109
Score = 222 bits (561), Expect = 7e-58
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MELYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEG 60
MELYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEG
Sbjct: 1 MELYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEG 60
Query: 61 KKFIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKVW 109
KKFIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKVW
Sbjct: 61 KKFIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKVW 109
>pir||F71453 methionine--tRNA ligase truncated homolog PH0285 [imported] -
Pyrococcus horikoshii >gi|3256674|dbj|BAA29357.1|
(AP000001) 112aa long hypothetical methionyl-tRNA
synthetase [Pyrococcus horikoshii]
Length = 112
Score = 196 bits (492), Expect = 9e-50
Identities = 92/109 (84%), Positives = 104/109 (95%)
Query: 1 MELYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEG 60
MELYDV+EFWKF M+VGLVKKAEK+KRT+KLI+L VDFG+EERTI+TGIADQ PE+LEG
Sbjct: 4 MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEG 63
Query: 61 KKFIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKVW 109
KKFIFV+NLKPKKFSGVESQGML++AETEDGKVYLIPVPEEVPVG +VW
Sbjct: 64 KKFIFVVNLKPKKFSGVESQGMLILAETEDGKVYLIPVPEEVPVGARVW 112
>gi|11499048 methionyl-tRNA synthetase (metS) [Archaeoglobus fulgidus]
>gi|3122911|sp|O28819|SYM_ARCFU METHIONYL-TRNA
SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS)
>gi|7437665|pir||D69431 methionine--tRNA ligase (EC
6.1.1.10) - Archaeoglobus fulgidus
>gi|2649118|gb|AAB89796.1| (AE001003) methionyl-tRNA
synthetase (metS) [Archaeoglobus fulgidus]
Length = 658
Score = 115 bits (285), Expect = 2e-25
Identities = 56/107 (52%), Positives = 79/107 (73%), Gaps = 1/107 (0%)
Query: 2 ELYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGK 61
E +E+F K D+R+G V KAEK+K+++KLI+L +D G E+R I++GIA+ Y PE+LEGK
Sbjct: 552 EEISIEDFQKLDIRIGRVLKAEKVKKSKKLIKLIIDIGDEQRQIVSGIAEDYTPEELEGK 611
Query: 62 KFIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
+ + NLKP KF GVES+GM+L AE +DGK L+ +EV GT+V
Sbjct: 612 LVVVLANLKPAKFMGVESRGMILAAE-KDGKAVLLTPEKEVEPGTRV 657
>sp|Q58659|SYM_METJA METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS)
>gi|2129107|pir||F64457 methionine--tRNA ligase (EC
6.1.1.10) - Methanococcus jannaschii
>gi|1591898|gb|AAB99269.1| (U67567) methionyl-tRNA
synthetase (metS) [Methanococcus jannaschii]
Length = 651
Score = 105 bits (259), Expect = 2e-22
Identities = 51/108 (47%), Positives = 73/108 (67%)
Query: 1 MELYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEG 60
ME D+ K D+RVG V +AE + +++KL++L VD G E+R I++GI Y PEDL G
Sbjct: 543 MEQIDISYLEKIDLRVGEVVEAEDIPKSKKLLKLMVDLGDEKRQIVSGIKGYYKPEDLVG 602
Query: 61 KKFIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
KK I + NLKP K GV S+GM+L AE ++G V L+ V +++ G+KV
Sbjct: 603 KKVIVICNLKPAKLCGVLSEGMILAAEDDEGNVSLLTVDKDIKAGSKV 650
>emb|CAC12407.1| (AL445067) fragment of probable methionine--tRNA ligase
[Thermoplasma acidophilum]
Length = 107
Score = 100 bits (247), Expect = 5e-21
Identities = 53/104 (50%), Positives = 70/104 (66%), Gaps = 1/104 (0%)
Query: 5 DVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKKFI 64
D+ F + D+R V AEK++++R L+RL VD G E++ II+ IAD YNP DL GK I
Sbjct: 4 DINYFRQLDIRAVKVVSAEKVEKSRSLLRLIVDLGGEQKQIISSIADYYNPSDLVGKTII 63
Query: 65 FVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
+ NLKP KF G+ESQGMLL + EDG V L+ V EV G++V
Sbjct: 64 ILNNLKPAKFMGLESQGMLLAVDNEDG-VKLLTVDGEVKPGSRV 106
>sp|O33925|SYM_THEMA METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS)
>gi|7437661|pir||E72297 methionine--tRNA ligase (EC
6.1.1.10) - Thermotoga maritima (strain MSB8)
>gi|2645225|gb|AAB87143.1| (U76417) methionyl-tRNA
synthetase [Thermotoga maritima]
>gi|4981630|gb|AAD36162.1|AE001768_11 (AE001768)
methionyl-tRNA synthetase [Thermotoga maritima]
Length = 629
Score = 99.1 bits (243), Expect = 1e-20
Identities = 49/103 (47%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 6 VEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKKFIF 65
+++F K D+R+ V +AEK+ +RKL+RL +D G+E+R I+ GIA+ Y PE+L GK +
Sbjct: 527 IDDFSKVDLRIAKVLEAEKVPNSRKLLRLIIDLGTEKRQIVAGIAEHYRPEELVGKLIVV 586
Query: 66 VLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
V NLKP K G+ESQGMLL A++ D + L+ V E+ G KV
Sbjct: 587 VANLKPAKLMGIESQGMLLAAKSGD-TLRLLTVDGEITPGAKV 628
>pir||F70338 methionine--tRNA ligase (EC 6.1.1.10) beta - Aquifex aeolicus
>gi|2983087|gb|AAC06693.1| (AE000689) methionyl-tRNA
synthetase beta subunit [Aquifex aeolicus]
Length = 111
Score = 96.3 bits (236), Expect = 9e-20
Identities = 49/107 (45%), Positives = 71/107 (65%), Gaps = 3/107 (2%)
Query: 3 LYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKK 62
L +E+F K D+RV V AE+++ + KL++L + G EERT++ GIA Y PE+L GKK
Sbjct: 6 LIGIEDFLKVDLRVAKVLSAERVEGSEKLLKLTLSLGDEERTVVAGIAKYYTPEELVGKK 65
Query: 63 FIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPE-EVPVGTKV 108
+ V NLKP+K G+ESQGM+L A DG+ + VP+ +V G K+
Sbjct: 66 IVIVANLKPRKIFGIESQGMILAA--SDGENLSVIVPDRDVKEGAKL 110
>pir||H72655 protein secretion chaperonin APE0675 [similarity] - Aeropyrum
pernix (strain K1) >gi|5104333|dbj|BAA79648.1|
(AP000060) 117aa long hypothetical methionyl-tRNA
synthetase [Aeropyrum pernix]
Length = 117
Score = 95.6 bits (234), Expect = 2e-19
Identities = 51/107 (47%), Positives = 71/107 (65%), Gaps = 1/107 (0%)
Query: 3 LYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKK 62
L +E+F K D+RVG V KAE+L ++KL++L VD G EER ++ GIA Y+PE+L G+
Sbjct: 10 LIGIEDFAKVDLRVGRVVKAERLPHSKKLLKLIVDIGGEERQVLAGIAKWYSPEELVGRL 69
Query: 63 FIFVLNLKPKKFSGVESQGMLLVAETEDG-KVYLIPVPEEVPVGTKV 108
I V NL+PK+ +G SQGM+L A D K L+ V E V G++V
Sbjct: 70 VIVVANLQPKRMAGEVSQGMVLAAPCGDSEKPVLLTVSEPVEPGSRV 116
>pir||C75395 methionyl-tRNA synthetase - Deinococcus radiodurans (strain R1)
>gi|6459194|gb|AAF11005.1|AE001988_1 (AE001988)
methionyl-tRNA synthetase [Deinococcus radiodurans]
Length = 681
Score = 95.2 bits (233), Expect = 2e-19
Identities = 45/106 (42%), Positives = 67/106 (62%)
Query: 3 LYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKK 62
L +++F K D+R+ V E +++ KL++L V G E RT+++GI Y PE L G+K
Sbjct: 575 LISIDDFAKIDLRIAEVVACEAVEKADKLLKLTVKLGDETRTVVSGIRKWYEPEALVGRK 634
Query: 63 FIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
+ V NLKP K G+ESQGM+L AE + G + L+ ++P GTKV
Sbjct: 635 VVLVANLKPAKLRGIESQGMILAAEDDAGNLDLVGTELDLPSGTKV 680
>gb|AAK40936.1| Methionyl-tRNA synthetase N-term homolog (metS-like) [Sulfolobus
solfataricus]
Length = 162
Score = 93.6 bits (229), Expect = 6e-19
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 6/108 (5%)
Query: 6 VEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKKFIF 65
+++F K D++VG+V++AE+++ TR L++L +D GSE+R II G+ + Y PE+L K+ I
Sbjct: 55 IDDFAKLDLKVGIVRQAERIEGTR-LLKLLIDLGSEQRQIIAGLGEYYTPEELLNKRIIV 113
Query: 66 VLNLKPKKFSGVESQGMLLVA-----ETEDGKVYLIPVPEEVPVGTKV 108
+ NLKP+ G ESQGMLL A E + K ++ V EVP GTK+
Sbjct: 114 IANLKPRVIRGFESQGMLLAAGCKEDEAKGIKPRILTVDGEVPPGTKI 161
>emb|CAB57675.1| (Y18930) homolog of methionyl-tRNA synthetase [Sulfolobus
solfataricus]
Length = 162
Score = 93.6 bits (229), Expect = 6e-19
Identities = 48/108 (44%), Positives = 73/108 (67%), Gaps = 6/108 (5%)
Query: 6 VEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKKFIF 65
+++F K D++VG+V++AE+++ TR L++L +D GSE+R II G+ + Y PE+L K+ I
Sbjct: 55 IDDFAKLDLKVGIVRQAERIEGTR-LLKLLIDLGSEQRQIIAGLGEYYTPEELLNKRIIV 113
Query: 66 VLNLKPKKFSGVESQGMLLVA-----ETEDGKVYLIPVPEEVPVGTKV 108
+ NLKP+ G ESQGMLL A E + K ++ V EVP GTK+
Sbjct: 114 IANLKPRVIRGFESQGMLLAAGCKEDEAKGIKPRILTVDGEVPPGTKI 161
>sp|P23395|SYM_THETH METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS)
>gi|68543|pir||SYTWMT methionine--tRNA ligase (EC
6.1.1.10) - Thermus aquaticus >gi|155136|gb|AAA27510.1|
(M64273) transfer RNA-Met synthetase [Thermus
thermophilus]
Length = 616
Score = 89.7 bits (219), Expect = 9e-18
Identities = 47/100 (47%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Query: 6 VEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKKFIF 65
+E+F K ++RV V AEK +L+ L + G+EERT+++GIA Y PE+L GKK +
Sbjct: 516 IEDFAKVELRVAEVLAAEKHPNADRLLVLRLSLGNEERTVVSGIAKWYRPEELVGKKVVL 575
Query: 66 VLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVG 105
V NLKP K G+ESQGM+L A+ E + L+ V EVP G
Sbjct: 576 VANLKPAKLRGIESQGMILAAQ-EGEALALVTVEGEVPPG 614
>sp|P23920|SYM_BACST METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS)
>gi|98214|pir||S16682 methionine--tRNA ligase (EC
6.1.1.10) - Bacillus stearothermophilus
>gi|39989|emb|CAA40999.1| (X57925) methionyl-tRNA
synthetase [Bacillus stearothermophilus]
Length = 649
Score = 88.9 bits (217), Expect = 2e-17
Identities = 48/107 (44%), Positives = 67/107 (61%), Gaps = 1/107 (0%)
Query: 2 ELYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGK 61
E +++F K D+RV V + E++K KL++L +D G E+R +I+GIA+ Y PE+L GK
Sbjct: 543 EEISIDDFAKVDLRVAEVVQPERMKNADKLLKLQLDLGGEKRQVISGIAEFYKPEELIGK 602
Query: 62 KFIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
K I V NLKP K G S+GM+L A G L V + VP GTK+
Sbjct: 603 KVICVANLKPAKLRGEWSEGMIL-AGGSGGGFSLATVDQHVPNGTKI 648
>sp|P37465|SYM_BACSU METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS)
>gi|2127140|pir||S66067 methionine--tRNA ligase (EC
6.1.1.10) metS - Bacillus subtilis
>gi|467427|dbj|BAA05273.1| (D26185) methionyl-tRNA
synthetase [Bacillus subtilis]
>gi|2632305|emb|CAB11814.1| (Z99104) methionyl-tRNA
synthetase [Bacillus subtilis]
Length = 664
Score = 88.5 bits (216), Expect = 2e-17
Identities = 41/103 (39%), Positives = 68/103 (65%), Gaps = 1/103 (0%)
Query: 6 VEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKKFIF 65
+++F ++RV V +AE +K+ +L++L +D G E+R +++GIA Y PE+L GKK +
Sbjct: 562 IDQFMDVELRVAEVIEAEPVKKADRLLKLQLDLGFEKRQVVSGIAKHYTPEELVGKKLVC 621
Query: 66 VLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
V NLKP K G SQGM+L E DG + ++ + + +P GT++
Sbjct: 622 VTNLKPVKLRGELSQGMILAGEA-DGVLKVVSIDQSLPKGTRI 663
>sp|O58721|SYM_PYRHO METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS)
>gi|7437669|pir||D71091 methionine--tRNA ligase (EC
6.1.1.10) - Pyrococcus horikoshii
>gi|3257407|dbj|BAA30090.1| (AP000004) 723aa long
hypothetical methionyl-tRNA synthetase [Pyrococcus
horikoshii]
Length = 723
Score = 85.4 bits (208), Expect = 2e-16
Identities = 47/108 (43%), Positives = 63/108 (57%), Gaps = 1/108 (0%)
Query: 1 MELYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEG 60
ME E+F K D+RVG + + + KL + VD G E RT++ G+ Y PE+L
Sbjct: 616 MEYVKFEDFAKLDLRVGKIIEVKDHPNADKLYIVKVDLGKEVRTLVAGLKKYYKPEELLN 675
Query: 61 KKFIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
K I V NL+PKK GVESQGMLL A+ + L+P +EV +G KV
Sbjct: 676 KYVIIVANLEPKKLRGVESQGMLLAADDGENVALLMP-DKEVKLGAKV 722
>sp|O26687|SYM_METTH METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS)
>gi|7437664|pir||G69177 methionine--tRNA ligase (EC
6.1.1.10) - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2621666|gb|AAB85093.1| (AE000841)
methionyl-tRNA synthetase [Methanobacterium
thermoautotrophicum]
Length = 651
Score = 81.5 bits (198), Expect = 3e-15
Identities = 38/108 (35%), Positives = 69/108 (63%), Gaps = 4/108 (3%)
Query: 1 MELYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEG 60
+E +++F D+RVG+++ AE+++ + KL++L +D G E ++ G+A++Y+PEDL
Sbjct: 547 VETVTIDDFTTMDIRVGVIRSAERIEGSDKLLKLIIDVGEREMQVVAGLAEKYSPEDLVE 606
Query: 61 KKFIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
+K ++NLKP K GV+S+GM+L G+ I P + VG ++
Sbjct: 607 RKITVLVNLKPAKLFGVKSEGMVLAT----GESLNILDPGDAEVGERI 650
>sp|Q9ZKG9|SYM_HELPJ METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS)
>gi|7437662|pir||H71867 methionine--tRNA ligase (EC
6.1.1.10) - Helicobacter pylori (strain J99)
>gi|4155547|gb|AAD06543.1| (AE001525) METHIONYL-TRNA
SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 81.5 bits (198), Expect = 3e-15
Identities = 40/98 (40%), Positives = 61/98 (61%), Gaps = 1/98 (1%)
Query: 6 VEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEE-RTIITGIADQYNPEDLEGKKFI 64
+E+F K +++VGL+K+A++++++ KL+RL VD G R II+GIA Y PE L G+
Sbjct: 553 IEDFKKVEIKVGLIKEAQRIEKSNKLLRLKVDLGENRLRQIISGIALDYEPESLVGQMVC 612
Query: 65 FVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEV 102
V NLKP K G S+GM+L D + P E++
Sbjct: 613 VVANLKPAKLMGEMSEGMILAVRDNDNLALISPTREKI 650
>sp|P56127|SYM_HELPY METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS)
>gi|7437663|pir||A64572 methionine--tRNA ligase (EC
6.1.1.10) - Helicobacter pylori (strain 26695)
>gi|2313521|gb|AAD07483.1| (AE000557) methionyl-tRNA
synthetase (metS) [Helicobacter pylori 26695]
Length = 650
Score = 80.8 bits (196), Expect = 4e-15
Identities = 40/98 (40%), Positives = 61/98 (61%), Gaps = 1/98 (1%)
Query: 6 VEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEE-RTIITGIADQYNPEDLEGKKFI 64
+E+F K +++VGL+K+A++++++ KL+RL VD G R II+GIA Y PE L G+
Sbjct: 547 IEDFKKVEIKVGLIKEAQRIEKSNKLLRLKVDLGEGRLRQIISGIALDYEPESLVGQMVC 606
Query: 65 FVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEV 102
V NLKP K G S+GM+L D + P E++
Sbjct: 607 VVANLKPAKLMGEMSEGMILAVRDSDNLALISPTREKI 644
>dbj|BAB03772.1| (AP001507) methionyl-tRNA synthetase [Bacillus halodurans]
Length = 660
Score = 79.2 bits (192), Expect = 1e-14
Identities = 42/103 (40%), Positives = 66/103 (63%), Gaps = 1/103 (0%)
Query: 6 VEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKKFIF 65
+++F K ++R+ V AE +K+ +L+++ +D G E+R +++GIA Y+P DL GKK I
Sbjct: 558 IDDFSKVELRIAEVIDAEPVKKADRLLKIQLDLGYEKRQVVSGIAKYYSPSDLIGKKVIC 617
Query: 66 VLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
V NLKP K G SQGM+L A +E ++ L V +P G+ V
Sbjct: 618 VTNLKPVKLRGELSQGMIL-AGSEGDQLRLATVDGALPNGSLV 659
>pir||A81246 methionyl-tRNA synthetase NMB0030 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225249|gb|AAF40501.1| (AE002361) methionyl-tRNA
synthetase [Neisseria meningitidis MC58]
Length = 685
Score = 78.4 bits (190), Expect = 2e-14
Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 7 EEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQY-NPEDLEGKKFIF 65
++F K DMRV V E ++ + KL++ D+DFG E+R I +GIA Y NP +L G+ I
Sbjct: 581 DDFMKIDMRVAKVLNCEAVEGSTKLLKFDLDFGFEKRIIFSGIAASYPNPAELNGRMVIA 640
Query: 66 VLNLKPKKFS--GVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
V N P+K + GV S+GM+L A T DGK+ L+ V G KV
Sbjct: 641 VANFAPRKMAKFGV-SEGMILSAATADGKLKLLDVDTGAQPGDKV 684
>pir||G82022 methionine--tRNA ligase (EC 6.1.1.10) NMA0275 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379037|emb|CAB83583.1| (AL162752) methionyl-tRNA
synthetase [Neisseria meningitidis Z2491]
Length = 685
Score = 78.4 bits (190), Expect = 2e-14
Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 7 EEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQY-NPEDLEGKKFIF 65
++F K DMRV V E ++ + KL++ D+DFG E+R I +GIA Y NP +L G+ I
Sbjct: 581 DDFMKIDMRVAKVLNCEAVEGSTKLLKFDLDFGFEKRIIFSGIAASYPNPAELNGRMVIA 640
Query: 66 VLNLKPKKFS--GVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
V N P+K + GV S+GM+L A T DGK+ L+ V G KV
Sbjct: 641 VANFAPRKMAKFGV-SEGMILSAATADGKLKLLDVDAGAQPGDKV 684
>sp|P43828|SYM_HAEIN METHIONYL-TRNA SYNTHETASE (METHIONINE--TRNA LIGASE) (METRS)
>gi|1075016|pir||I64113 methionine--tRNA ligase (EC
6.1.1.10) - Haemophilus influenzae (strain Rd KW20)
>gi|1574731|gb|AAC22924.1| (U32807) methionyl-tRNA
synthetase (metG) [Haemophilus influenzae Rd]
Length = 682
Score = 76.1 bits (184), Expect = 1e-13
Identities = 41/108 (37%), Positives = 60/108 (54%), Gaps = 1/108 (0%)
Query: 2 ELYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYN-PEDLEG 60
E +++F K DMRV V K E + + KL+R ++D G R + +GI YN PE+LEG
Sbjct: 574 ETITIDDFAKLDMRVAKVLKCEAVPESNKLLRFELDLGDHTRQVFSGIKAAYNKPEELEG 633
Query: 61 KKFIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
+ I V NL P+K S+GM+L A T ++L+ V G +V
Sbjct: 634 RFVIMVANLAPRKMKFGVSEGMILSAGTGGSDLFLLSADSGVTAGMQV 681
>pir||B75074 methionyl-tRNA synthetase (mets) PAB2364 - Pyrococcus abyssi
(strain Orsay) >gi|5458407|emb|CAB49895.1| (AJ248286)
methionyl-tRNA synthetase (metS) [Pyrococcus abyssi]
Length = 722
Score = 76.1 bits (184), Expect = 1e-13
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 7 EEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKKFIFV 66
++F K D+RVG + + + KL + VD G E RT++ G+ Y PE+L + + V
Sbjct: 621 DDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDEVRTLVAGLKKYYKPEELLNRYVVVV 680
Query: 67 LNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
NL+PKK G+ SQGMLL A+ + L+P +EV +G KV
Sbjct: 681 ANLEPKKLRGIGSQGMLLAADDGERVALLMP-DKEVKLGAKV 721
>pir||D82249 methionyl-tRNA synthetase VC1036 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655500|gb|AAF94195.1|
(AE004185) methionyl-tRNA synthetase [Vibrio cholerae]
Length = 731
Score = 72.6 bits (175), Expect = 1e-12
Identities = 34/104 (32%), Positives = 59/104 (56%)
Query: 5 DVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKKFI 64
+ ++F K D+R+ + E ++++ KL++ ++D G E R + +GI Y PEDL GK +
Sbjct: 627 EFDDFAKVDLRIAKILSCEAVEKSDKLLKFELDIGGETRQVFSGIKSAYQPEDLIGKYTV 686
Query: 65 FVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
V NLKP+K S+GM+L A ++L+ + G +V
Sbjct: 687 VVANLKPRKMKFGMSEGMILAAGPGGSDLWLLEPHQGAQAGMRV 730
>gb|AAG18903.1| (AE004992) methionine-tRNA synthetase; MetS [Halobacterium sp.
NRC-1]
Length = 689
Score = 69.5 bits (167), Expect = 1e-11
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Query: 7 EEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEGKKFIFV 66
EEF D+RVG V +AE ++ L RL+VD G E R I+ GI ++ + L G + + V
Sbjct: 590 EEFQALDLRVGEVVEAEGIEGADDLARLEVDIGHEVRQIVAGIKQLHDLDALPGTRVVVV 649
Query: 67 LNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
N++P + GVES GM+L A ED L+ E+ GTKV
Sbjct: 650 ANMEPSELFGVESNGMVLAA-GEDAD--LLTTHEDSEPGTKV 688
>pir||C83210 methionyl-tRNA synthetase PA3482 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949627|gb|AAG06870.1|AE004769_3 (AE004769)
methionyl-tRNA synthetase [Pseudomonas aeruginosa]
Length = 677
Score = 66.7 bits (160), Expect = 7e-11
Identities = 35/105 (33%), Positives = 58/105 (54%), Gaps = 1/105 (0%)
Query: 5 DVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQY-NPEDLEGKKF 63
D + F D+R+ L++K E ++ KL+RL +D G +R + +GI Y +P LEG+
Sbjct: 572 DFDAFAAVDLRIALIEKCEFVEGADKLLRLSLDIGDAKRNVFSGIKSAYPDPSALEGRLT 631
Query: 64 IFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEEVPVGTKV 108
++V NL P+K S+GM+L A ++YL+ G +V
Sbjct: 632 LYVANLAPRKMKFGVSEGMVLAAGPGGEEIYLLSPDSGAKPGQRV 676
>sp|P42589|YGJH_ECOLI HYPOTHETICAL 12.3 KD PROTEIN IN ILEX-EBGR INTERGENIC REGION
>gi|7451808|pir||G65095 hypothetical 12.3 kD protein in
ileX-ebgR intergenic region - Escherichia coli (strain
K-12) >gi|606012|gb|AAA57875.1| (U18997) ORF_f110
[Escherichia coli] >gi|1789455|gb|AAC76109.1| (AE000389)
putative tRNA synthetase [Escherichia coli K12]
Length = 110
Score = 66.3 bits (159), Expect = 1e-10
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 1 MELYDVEEFWKFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEERTIITGIADQYNPEDLEG 60
ME +F + +MRVG + + ++ + KL + VD G + +T + Y+ E+L G
Sbjct: 1 METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMG 60
Query: 61 KKFIFVLNLKPKKFSGVESQGMLLVAETEDGKVYLIPVPEE-VPVGTKV 108
K + + NL+ K G S+ MLL AET+DG ++ PE +P G +V
Sbjct: 61 KTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRV 109
>gb|AAC99620.1| (AF040700) methionyl-tRNA synthetase [Oryza sativa]
Length = 804
Score = 66.3 bits (159), Expect = 1e-10
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 11 KFDMRVGLVKKAEKLKRTRKLIRLDVDFGSEE-RTIITGIADQYNPEDLEGKKFIFVLNL 69
K D+RVGL++KA+K L ++D G E RT+++G+ E+++ +K + NL
Sbjct: 645 KLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNRKVCVLCNL 704
Query: 70 KPKKFSGVESQGMLLVAETED-GKVYLIPVPEEVPVGTKV 108
KP G++S M+L A ED KV L+ PE VG +V
Sbjct: 705 KPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERV 744
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.141 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40104910
Number of Sequences: 2977
Number of extensions: 1500600
Number of successful extensions: 4430
Number of sequences better than 1.0e-10: 28
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4399
Number of HSP's gapped (non-prelim): 28
length of query: 109
length of database: 189,106,746
effective HSP length: 51
effective length of query: 58
effective length of database: 158,583,909
effective search space: 9197866722
effective search space used: 9197866722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 159 (66.3 bits)