BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0279 (PAB0279) DE:Protein tyrosine phosphatase
         (151 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75157 protein tyrosine phosphatase PAB0279 - Pyrococcus ab...   305  1e-82
pir||G71181 hypothetical protein PH1732 - Pyrococcus horikoshii ...   246  1e-64
gb|AAK42593.1| Conserved hypothetical protein [Sulfolobus solfat...    75  3e-13
pir||T33986 hypothetical protein T12B3.1 - Caenorhabditis elegan...    71  5e-12

>pir||C75157 protein tyrosine phosphatase PAB0279 - Pyrococcus abyssi  (strain
           Orsay) >gi|5457848|emb|CAB49338.1| (AJ248284) Protein
           tyrosine phosphatase [Pyrococcus abyssi]
           Length = 151
           
 Score =  305 bits (774), Expect = 1e-82
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MERFVDDNVAFGRMPYEDEVDYLLEKFNAFVVLVEDFELVYDLNKLRQRAEVLHSPIPDF 60
           MERFVDDNVAFGRMPYEDEVDYLLEKFNAFVVLVEDFELVYDLNKLRQRAEVLHSPIPDF
Sbjct: 1   MERFVDDNVAFGRMPYEDEVDYLLEKFNAFVVLVEDFELVYDLNKLRQRAEVLHSPIPDF 60

Query: 61  TAPSLEQLMEIIEWIEEKVREGKKVYIHCYGGSGRSGTIATAWLMYSQGIPLREALRRVR 120
           TAPSLEQLMEIIEWIEEKVREGKKVYIHCYGGSGRSGTIATAWLMYSQGIPLREALRRVR
Sbjct: 61  TAPSLEQLMEIIEWIEEKVREGKKVYIHCYGGSGRSGTIATAWLMYSQGIPLREALRRVR 120

Query: 121 LLKPSAVETEDQMKILEEFEEFLKKAGIIRS 151
           LLKPSAVETEDQMKILEEFEEFLKKAGIIRS
Sbjct: 121 LLKPSAVETEDQMKILEEFEEFLKKAGIIRS 151


>pir||G71181 hypothetical protein PH1732 - Pyrococcus horikoshii
           >gi|3258163|dbj|BAA30846.1| (AP000007) 146aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 146
           
 Score =  246 bits (621), Expect = 1e-64
 Identities = 112/143 (78%), Positives = 133/143 (92%)

Query: 1   MERFVDDNVAFGRMPYEDEVDYLLEKFNAFVVLVEDFELVYDLNKLRQRAEVLHSPIPDF 60
           ME+F+D+NVAFGRMPYEDE+D L+EKF+AFVVLVEDFELVYD+ +L+++ +VLHSPIPDF
Sbjct: 1   MEKFIDENVAFGRMPYEDEIDELVEKFDAFVVLVEDFELVYDIEELKKKVDVLHSPIPDF 60

Query: 61  TAPSLEQLMEIIEWIEEKVREGKKVYIHCYGGSGRSGTIATAWLMYSQGIPLREALRRVR 120
           TAPSL QL +I++WIEEKV+EGKKVYIHCYGGSGRSGT+A AWLMYSQG+ LRE LRRVR
Sbjct: 61  TAPSLSQLYKIVKWIEEKVKEGKKVYIHCYGGSGRSGTVAVAWLMYSQGLSLREGLRRVR 120

Query: 121 LLKPSAVETEDQMKILEEFEEFL 143
           LLKPSAVETEDQ+++L EFE FL
Sbjct: 121 LLKPSAVETEDQLEVLREFERFL 143


>gb|AAK42593.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 161
           
 Score = 75.3 bits (182), Expect = 3e-13
 Identities = 50/141 (35%), Positives = 81/141 (56%), Gaps = 13/141 (9%)

Query: 14  MPY-EDEV-DYLLEKFNAFVVLVEDFELV-------YDLNKLRQRA-EVLHSPIPDFTAP 63
           +PY E+E+ ++  E     +VL ED+E+        Y L+ L++   + LH PIPD   P
Sbjct: 14  LPYTENEILEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPDGGVP 73

Query: 64  SLEQLMEIIEWIEEKVREGKKVYIHCYGGSGRSGTIATAWLMYSQGIPLREALRRVRLLK 123
           S  Q + I++W+  + +EG  V  HC GG GR+GTI  ++L+ ++G+ +  A+  VRL++
Sbjct: 74  SDSQFLTIMKWLLSE-KEGNLV--HCVGGIGRTGTILASYLILTEGLEVESAIDEVRLVR 130

Query: 124 PSAVETEDQMKILEEFEEFLK 144
           P AV+T +Q   L   E   K
Sbjct: 131 PGAVQTYEQEMFLLRVEGMRK 151


>pir||T33986 hypothetical protein T12B3.1 - Caenorhabditis elegans
           >gi|4262617|gb|AAD14737.1| (AF125960) contains
           similarity to dual specificity phosphatase, catalyitic
           domain (Pfam:PF00782, Score=16.8, E=7.4e-05, N=1)
           [Caenorhabditis elegans]
           Length = 446
           
 Score = 71.4 bits (172), Expect = 5e-12
 Identities = 33/104 (31%), Positives = 63/104 (59%), Gaps = 1/104 (0%)

Query: 44  NKLRQRAEVLHSPIPDFTAPSLEQLMEIIEWIEEKVREGKKVYIHCYGGSGRSGTIATAW 103
           N +R      + P+PDF A +  +L++I++ ++  +  GK + +HC+ G GR+G +  AW
Sbjct: 133 NLMRNGIYHYNFPLPDFQACTPNRLLDIVKVVDFALSHGK-IAVHCHAGHGRTGMVIAAW 191

Query: 104 LMYSQGIPLREALRRVRLLKPSAVETEDQMKILEEFEEFLKKAG 147
           +MY+ G+   +A+  VR  +  AV++++Q+K L EF   ++  G
Sbjct: 192 MMYALGMSPSQAVDTVRSRRAKAVQSKEQVKTLHEFRLLIRNNG 235


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.140    0.403 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56970554
Number of Sequences: 2977
Number of extensions: 2338385
Number of successful extensions: 8506
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8502
Number of HSP's gapped (non-prelim): 4
length of query: 151
length of database: 189,106,746
effective HSP length: 53
effective length of query: 98
effective length of database: 157,386,935
effective search space: 15423919630
effective search space used: 15423919630
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)