BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0282 (PAB0282) DE:Hypothetical protein
         (204 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75158 hypothetical protein PAB0282 - Pyrococcus abyssi (st...   406  e-112
pir||D71198 hypothetical protein PH1857 - Pyrococcus horikoshii ...   358  4e-98

>pir||H75158 hypothetical protein PAB0282 - Pyrococcus abyssi (strain Orsay)
           >gi|5457861|emb|CAB49351.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 204
           
 Score =  406 bits (1032), Expect = e-112
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MKPKYIDKMIVDKIKNGDVVVIEYPSTFPVHEFLWDELIPTLIDEFEIVIDDFFGIGDVL 60
           MKPKYIDKMIVDKIKNGDVVVIEYPSTFPVHEFLWDELIPTLIDEFEIVIDDFFGIGDVL
Sbjct: 1   MKPKYIDKMIVDKIKNGDVVVIEYPSTFPVHEFLWDELIPTLIDEFEIVIDDFFGIGDVL 60

Query: 61  FRTFLRRVPPKEYSEIMERIIGKVKVIKIGPGKVSYSNVIEEIPLTYDLSEFIKLYYPGI 120
           FRTFLRRVPPKEYSEIMERIIGKVKVIKIGPGKVSYSNVIEEIPLTYDLSEFIKLYYPGI
Sbjct: 61  FRTFLRRVPPKEYSEIMERIIGKVKVIKIGPGKVSYSNVIEEIPLTYDLSEFIKLYYPGI 120

Query: 121 REVIAKASRRVIFITVGLAEYLYFGGDNALQTILLSRSILPIEDWTSVYLVNVNLAPEKS 180
           REVIAKASRRVIFITVGLAEYLYFGGDNALQTILLSRSILPIEDWTSVYLVNVNLAPEKS
Sbjct: 121 REVIAKASRRVIFITVGLAEYLYFGGDNALQTILLSRSILPIEDWTSVYLVNVNLAPEKS 180

Query: 181 IAALEEISPLVIYLSEKGTLVKKE 204
           IAALEEISPLVIYLSEKGTLVKKE
Sbjct: 181 IAALEEISPLVIYLSEKGTLVKKE 204


>pir||D71198 hypothetical protein PH1857 - Pyrococcus horikoshii
           >gi|3258296|dbj|BAA30979.1| (AP000007) 204aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 204
           
 Score =  358 bits (908), Expect = 4e-98
 Identities = 162/204 (79%), Positives = 192/204 (93%)

Query: 1   MKPKYIDKMIVDKIKNGDVVVIEYPSTFPVHEFLWDELIPTLIDEFEIVIDDFFGIGDVL 60
           MKPKYIDKM++DKI+NGDV +IEYPSTFP+HEFLW +LIP LID FEIVIDDFFG+GDVL
Sbjct: 1   MKPKYIDKMVIDKIRNGDVAIIEYPSTFPIHEFLWGDLIPVLIDNFEIVIDDFFGLGDVL 60

Query: 61  FRTFLRRVPPKEYSEIMERIIGKVKVIKIGPGKVSYSNVIEEIPLTYDLSEFIKLYYPGI 120
           FRT+LRR+PPK Y E+ME+I+GK+K IKIGPGK+SY+  IEEIPLTYDLSEFIKLYYPGI
Sbjct: 61  FRTYLRRIPPKRYPEVMEKIMGKIKAIKIGPGKISYTGTIEEIPLTYDLSEFIKLYYPGI 120

Query: 121 REVIAKASRRVIFITVGLAEYLYFGGDNALQTILLSRSILPIEDWTSVYLVNVNLAPEKS 180
           RE++ K+S+RVIFITVGL+EYLYFGG+ AL+T+LLSRSILPIEDWTS+YL+NV+LAPE+S
Sbjct: 121 REILTKSSKRVIFITVGLSEYLYFGGNEALKTVLLSRSILPIEDWTSIYLLNVDLAPERS 180

Query: 181 IAALEEISPLVIYLSEKGTLVKKE 204
           +AALEEISP ++YLSEKGTLVKKE
Sbjct: 181 VAALEEISPFIVYLSEKGTLVKKE 204


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.144    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76591570
Number of Sequences: 2977
Number of extensions: 3188507
Number of successful extensions: 7196
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7194
Number of HSP's gapped (non-prelim): 2
length of query: 204
length of database: 189,106,746
effective HSP length: 53
effective length of query: 151
effective length of database: 157,386,935
effective search space: 23765427185
effective search space used: 23765427185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)