BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0283 (pimT-like) DE:PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE
HOMOLOG
(253 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75159 protein-l-isoaspartate methyltransferase homolog PAB... 516 e-146
pir||E71198 hypothetical protein PH1858 - Pyrococcus horikoshii ... 460 e-128
pir||D69055 protein-L-isoaspartate methyltransferase homolog - M... 198 6e-50
sp|Q57598|Y134_METJA HYPOTHETICAL PROTEIN MJ0134 >gi|2127995|pir... 186 2e-46
pir||G72340 conserved hypothetical protein - Thermotoga maritima... 172 4e-42
emb|CAB59504.1| (AL132648) hypothetical protein SCI41.34c [Strep... 164 1e-39
gb|AAC68688.1| (AF088800) unknown [Rhodococcus erythropolis] 160 2e-38
pir||A70513 hypothetical protein Rv2118c - Mycobacterium tubercu... 154 8e-37
emb|CAA22923.1| (AL035310) hypothetical protein MLCB2533.09 [Myc... 150 2e-35
pir||S72844 beta-aspartate methyltransferase pimT - Mycobacteriu... 148 5e-35
gb|AAK40752.1| Protein L-isoaspartate methyltransferase [Sulfolo... 145 7e-34
gi|11497832 L-isoaspartyl protein carboxyl methyltransferase Pim... 122 4e-27
pir||T48633 hypothetical protein T15N1.90 - Arabidopsis thaliana... 116 3e-25
gi|8923586 hypothetical protein FLJ20628 [Homo sapiens] >gi|7020... 106 2e-22
pir||F72480 probable beta-aspartate metyltransferase APE2486 - A... 104 8e-22
gb|AAF56565.1| (AE003754) CG14544 gene product [Drosophila melan... 100 3e-20
gb|AAG18973.1| (AE004998) L-isoaspartyl protein carboxyl methylt... 99 5e-20
pir||T24625 hypothetical protein W02A11.1 - Caenorhabditis elega... 90 3e-17
pir||A70328 hypothetical protein aq_311 - Aquifex aeolicus >gi|2... 89 7e-17
emb|CAC11981.1| (AL445065) conserved hypothetical protein [Therm... 79 6e-14
gb|AAC64273.1|AAC64273 (AF086832) unknown [Streptomyces coelicol... 73 3e-12
pir||T39235 probable translational repressor - fission yeast (S... 69 7e-11
>pir||A75159 protein-l-isoaspartate methyltransferase homolog PAB0283 -
Pyrococcus abyssi (strain Orsay)
>gi|5457862|emb|CAB49352.1| (AJ248284)
PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE HOMOLOG
[Pyrococcus abyssi]
Length = 253
Score = 516 bits (1315), Expect = e-146
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MIREGDKVVLVDPRGKRYLITVSKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
MIREGDKVVLVDPRGKRYLITVSKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR
Sbjct: 1 MIREGDKVVLVDPRGKRYLITVSKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
Query: 61 PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR
Sbjct: 61 PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
Query: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHA 180
VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHA
Sbjct: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHA 180
Query: 181 AKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTA 240
AKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTA
Sbjct: 181 AKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTA 240
Query: 241 LVHTGYITFARRI 253
LVHTGYITFARRI
Sbjct: 241 LVHTGYITFARRI 253
>pir||E71198 hypothetical protein PH1858 - Pyrococcus horikoshii
>gi|3258297|dbj|BAA30980.1| (AP000007) 253aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 253
Score = 460 bits (1170), Expect = e-128
Identities = 212/253 (83%), Positives = 242/253 (94%)
Query: 1 MIREGDKVVLVDPRGKRYLITVSKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
MIREGDK++LVDPRGKRYL+T + +DFHTDLGI+KL ++IG+NFG++IKSHKGH FKIL+
Sbjct: 1 MIREGDKIILVDPRGKRYLVTATPKDFHTDLGIIKLGDVIGKNFGDSIKSHKGHVFKILK 60
Query: 61 PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGP+G+
Sbjct: 61 PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPQGK 120
Query: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHA 180
+VSYEIREDFAKLAWENIK AGF+DRVTIKLK+IY+GI+EENVDH++LDLPQPERVVEHA
Sbjct: 121 IVSYEIREDFAKLAWENIKLAGFEDRVTIKLKNIYDGIDEENVDHIVLDLPQPERVVEHA 180
Query: 181 AKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTA 240
KALKPGGFF+AYTPC+NQVMRLH+KL EF+D FM+PRTI V+VFDQEVKKECMRP+TT
Sbjct: 181 IKALKPGGFFIAYTPCANQVMRLHDKLAEFRDTFMRPRTIEVIVFDQEVKKECMRPKTTV 240
Query: 241 LVHTGYITFARRI 253
L HTGYITFAR++
Sbjct: 241 LAHTGYITFARKL 253
>pir||D69055 protein-L-isoaspartate methyltransferase homolog - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622526|gb|AAB85891.1| (AE000903)
protein-L-isoaspartate methyltransferase homolog
[Methanobacterium thermoautotrophicum]
Length = 245
Score = 198 bits (498), Expect = 6e-50
Identities = 108/248 (43%), Positives = 156/248 (62%), Gaps = 4/248 (1%)
Query: 6 DKVVLVDPRGKRYLITVSKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVD 65
D +L+D RGK+YL+ + DF +D+GI+K E + G+ +K+H G E +L+P + D
Sbjct: 2 DLRILMDERGKKYLLEEGE-DFQSDMGIIKAETLEDSRPGDVLKTHLGREIYVLKPGLSD 60
Query: 66 YLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYE 125
YL+ M+R I+ PKD +I AY GI G +V+AG G+G + ++LAN+VG G V +YE
Sbjct: 61 YLELMERRCSILLPKDIGMICAYTGIVEGSRVVDAGTGAGTVAMYLANLVGESGHVTTYE 120
Query: 126 IREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAAKALK 185
IREDFA++A +NI GF + V +K +DI EGIEEE++D V LDLP+P ++E +L
Sbjct: 121 IREDFAEIAEKNIAAFGFKN-VEVKNRDIKEGIEEEDLDLVFLDLPRPWELMEDVHDSLL 179
Query: 186 PGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTALVHTG 245
GG+ V Y P QV +H K F RT + + EV+K+ RPRT + HTG
Sbjct: 180 RGGWAVFYNPYIEQVKLIHR--IGLKVGFADIRTFETIEREIEVRKQGTRPRTRMVGHTG 237
Query: 246 YITFARRI 253
Y+TF R+I
Sbjct: 238 YLTFMRKI 245
>sp|Q57598|Y134_METJA HYPOTHETICAL PROTEIN MJ0134 >gi|2127995|pir||F64316 hypothetical
protein homolog MJ0134 - Methanococcus jannaschii
>gi|1590899|gb|AAB98115.1| (U67470) L-isoaspartyl
protein carboxyl methyltransferase isolog (pimT)
[Methanococcus jannaschii]
Length = 282
Score = 186 bits (468), Expect = 2e-46
Identities = 112/269 (41%), Positives = 158/269 (58%), Gaps = 31/269 (11%)
Query: 9 VLVDPRGKRYLITVSKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYLD 68
+LVD RGKRYL+ + F TDLGI+ +++I G +KSHKGH F ++ P + D L
Sbjct: 6 LLVDERGKRYLLKKNVEKFGTDLGIVDMKDI---EEGVELKSHKGHTFYLVEPTMFDILK 62
Query: 69 KMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRE 128
+MKR + PKD I+A AGI G+ +VEAG GSGALT++L+N VG G+V++Y+IR
Sbjct: 63 RMKRTVTTLLPKDIGFIIARAGIREGETVVEAGTGSGALTMYLSNAVGKTGKVITYDIRP 122
Query: 129 DFAKLAWENIKWAG--------------FDD-----------RVTIKLKDIYEGIEEENV 163
+FAK+A +N+ G FDD V K+ D+ E I+E++V
Sbjct: 123 EFAKVARKNLLRVGAIKKGQKIIGLDEEFDDEDEIEIEDGLFNVIQKIGDVREKIDEKDV 182
Query: 164 DHVILDLPQPERVVEHAAKAL-KPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINV 222
D ++LDLP P VVE+A KAL K G V Y P QV + EKL+E + F T +
Sbjct: 183 DVIVLDLPDPWNVVENAKKALNKKRGRIVTYLPYIEQVKKTVEKLKE--EGFWDIHTYEI 240
Query: 223 LVFDQEVKKECMRPRTTALVHTGYITFAR 251
+ + E+ ++ +RP T + HTGYIT AR
Sbjct: 241 IEREIEISEKGVRPSTRMIGHTGYITVAR 269
>pir||G72340 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981273|gb|AAD35829.1|AE001744_19 (AE001744)
conserved hypothetical protein [Thermotoga maritima]
Length = 265
Score = 172 bits (431), Expect = 4e-42
Identities = 96/253 (37%), Positives = 146/253 (56%), Gaps = 3/253 (1%)
Query: 2 IREGDKVVLVDPRGKRYLITVSK-RDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
++ GD+V+L +L+ + K + HT LGI+ L E+ + GE I++ G + IL
Sbjct: 8 LKPGDRVLLSFEDESEFLVDLEKDKKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKGYILI 67
Query: 61 PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
P ++D + MKR QIV+PKD++ I + GD I++ GVGSGA+ LA VG G+
Sbjct: 68 PSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGK 127
Query: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHA 180
V +YE RE+FAKLA N+ G +RVTIK++DI EG +E++VD + LD+P P ++
Sbjct: 128 VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKC 187
Query: 181 AKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTA 240
+ALK GG F P +NQV +KL+E F++ L + E +RP
Sbjct: 188 WEALKGGGRFATVCPTTNQVQETLKKLQELP--FIRIEVWESLFRPYKPVPERLRPVDRM 245
Query: 241 LVHTGYITFARRI 253
+ HT Y+ FA ++
Sbjct: 246 VAHTAYMIFATKV 258
>emb|CAB59504.1| (AL132648) hypothetical protein SCI41.34c [Streptomyces coelicolor
A3(2)]
Length = 300
Score = 164 bits (411), Expect = 1e-39
Identities = 91/252 (36%), Positives = 145/252 (57%), Gaps = 4/252 (1%)
Query: 5 GDKVVLVDPRGKRYLITVSK-RDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRI 63
GD+V L DP+G+ Y T+ ++FHT G +E+IG G +++ + LRP +
Sbjct: 17 GDQVQLTDPKGRHYTFTLEAGKNFHTHKGSFPHDELIGAPEGSVVRTTGNVAYLALRPLL 76
Query: 64 VDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVS 123
DY+ M RG +V+PKDA I+A+A I PG +VEAGVGSG+L+ FL +G +G + S
Sbjct: 77 PDYVLSMPRGAAVVYPKDAGQILAFADIFPGARVVEAGVGSGSLSSFLLRAIGDQGMLHS 136
Query: 124 YEIREDFAKLAWENIK--WAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAA 181
YE REDFA++A +N++ + G + + D+ + + + +VD VILD+ P ++
Sbjct: 137 YERREDFAEIAQQNVQRYFGGPHPAWQLTVGDLQDNLSDTDVDRVILDMLAPWECLDVVK 196
Query: 182 KALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTAL 241
KAL PGG Y + Q+ R E +RE F +P + ++ + V+ +RP +
Sbjct: 197 KALVPGGILCCYVATTTQLARTVESIREI-GCFNEPTSWETMIRNWHVEGLAVRPDHRMI 255
Query: 242 VHTGYITFARRI 253
HTG++ ARR+
Sbjct: 256 GHTGFLLTARRL 267
>gb|AAC68688.1| (AF088800) unknown [Rhodococcus erythropolis]
Length = 324
Score = 160 bits (400), Expect = 2e-38
Identities = 96/258 (37%), Positives = 148/258 (57%), Gaps = 9/258 (3%)
Query: 3 REGDKVVLVDPRGKRYLITV-SKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRP 61
R GD+V L D +G+ Y I + + R++HT G + ++IG + G +KS G + LRP
Sbjct: 47 RVGDRVQLTDGKGRHYTIVLEANREYHTHKGGIVHNDLIGADEGSVVKSVNGTPYLALRP 106
Query: 62 RIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRV 121
+VDY+ M RG Q+++PKDAA IV + PG ++EAG GSGALT L VGPEG+V
Sbjct: 107 LLVDYVLSMPRGAQVIYPKDAAQIVHEGDVFPGARVLEAGAGSGALTCSLLRAVGPEGKV 166
Query: 122 VSYEIREDFAKLAWENIKWAGFDDRV---TIKLKDIYEGIEEEN---VDHVILDLPQPER 175
+SYE+R+D A+ A N++ F +R + + D+ E E + VD V+LD+ P
Sbjct: 167 ISYEVRDDHAEHAVRNVE-TFFGERPPNWELTIADLAEFDPEAHGGKVDRVVLDMLAPWD 225
Query: 176 VVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMR 235
V+ +KAL PGG + Y Q+ ++ E +RE ++ + +PR+ +V V +R
Sbjct: 226 VLPAVSKALVPGGVLIVYVATVTQLSKVVEAMRE-QECWTEPRSWESIVRGWHVVGLAVR 284
Query: 236 PRTTALVHTGYITFARRI 253
P HT ++ ARR+
Sbjct: 285 PEHRMQGHTAFLVSARRL 302
>pir||A70513 hypothetical protein Rv2118c - Mycobacterium tuberculosis (strain
H37RV) >gi|2253058|emb|CAB10715.1| (Z97559) hypothetical
protein Rv2118c [Mycobacterium tuberculosis]
Length = 280
Score = 154 bits (386), Expect = 8e-37
Identities = 91/253 (35%), Positives = 141/253 (54%), Gaps = 5/253 (1%)
Query: 5 GDKVVLVDPRGKRYLITVSK-RDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRI 63
G++V L D +G+RY ++++ +FHT G + + +IG G +KS G F +LRP +
Sbjct: 10 GERVQLTDAKGRRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGALFLVLRPLL 69
Query: 64 VDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVS 123
VDY+ M RGPQ+++PKDAA IV I PG ++EAG GSGALTL L VGP G+V+S
Sbjct: 70 VDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVIS 129
Query: 124 YEIREDFAKLAWENIK--WAGFDDRVTIKLKDIYEG-IEEENVDHVILDLPQPERVVEHA 180
YE R D A+ A N+ + D + + D+ + + + +VD +LD+ P V++
Sbjct: 130 YEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAV 189
Query: 181 AKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTA 240
++ L GG + Y Q+ R+ E LR K + +PR L V +RP+ +
Sbjct: 190 SRLLVAGGVLMVYVATVTQLSRIVEALRA-KQCWTEPRAWETLQRGWNVVGLAVRPQHSM 248
Query: 241 LVHTGYITFARRI 253
HT ++ RR+
Sbjct: 249 RGHTAFLVATRRL 261
>emb|CAA22923.1| (AL035310) hypothetical protein MLCB2533.09 [Mycobacterium leprae]
Length = 281
Score = 150 bits (374), Expect = 2e-35
Identities = 91/259 (35%), Positives = 144/259 (55%), Gaps = 11/259 (4%)
Query: 5 GDKVVLVDPRGKRYLITVSKR-DFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRI 63
G++V L D +G+ Y ++++ +FHT G + + IIG G +KS G F +LRP +
Sbjct: 10 GERVQLTDTKGRHYTMSLTPGGEFHTHRGSIAHDGIIGLEQGSVVKSSTGALFLVLRPLL 69
Query: 64 VDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVS 123
+DY+ M RGPQ+++PKDAA IV I PG ++EAG GSGALT L VGP+G+V+S
Sbjct: 70 IDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPQGQVIS 129
Query: 124 YEIREDFAKLAWENIK----WAGFDDRVT----IKLKDIYEG-IEEENVDHVILDLPQPE 174
YE+R D A+ A N+ +G + R++ + + D+ + + +VD V+LD+ P
Sbjct: 130 YELRTDHAEHARRNVSNFFCVSGAEGRLSDNWQLIVSDVANSELPDGSVDRVVLDMLAPW 189
Query: 175 RVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECM 234
V++ ++ + GG V Y Q+ R E LR + +++PR L V +
Sbjct: 190 EVLDTVSRLVIAGGVLVIYVATVTQLSRAVEALR-VQQCWVEPRAWETLQRGWNVVGLAV 248
Query: 235 RPRTTALVHTGYITFARRI 253
RP HT ++ ARR+
Sbjct: 249 RPEHLMRGHTAFLILARRL 267
>pir||S72844 beta-aspartate methyltransferase pimT - Mycobacterium leprae
>gi|466999|gb|AAA17184.1| (U00017) pimT; B2126_C1_165
[Mycobacterium leprae]
Length = 280
Score = 148 bits (371), Expect = 5e-35
Identities = 91/259 (35%), Positives = 143/259 (55%), Gaps = 11/259 (4%)
Query: 5 GDKVVLVDPRGKRYLITVSKR-DFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRI 63
G++V L D +G+ Y ++++ +FHT G + + IIG G +KS G F +LRP +
Sbjct: 10 GERVQLTDTKGRHYTMSLTPGGEFHTHRGSIAHDGIIGLEQGSVVKSSTGALFLVLRPLL 69
Query: 64 VDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVS 123
DY+ M RGPQ+++PKDAA IV I PG ++EAG GSGALT L VGP+G+V+S
Sbjct: 70 TDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTCSLLRAVGPQGQVIS 129
Query: 124 YEIREDFAKLAWENIK----WAGFDDRVT----IKLKDIYEG-IEEENVDHVILDLPQPE 174
YE+R D A+ A N+ +G + R++ + + D+ + + +VD V+LD+ P
Sbjct: 130 YELRTDHAEHARRNVSNFFCVSGAEGRLSDNWQLIVSDVANSELPDGSVDRVVLDMLAPW 189
Query: 175 RVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECM 234
V++ ++ + GG V Y Q+ R E LR + +++PR L V +
Sbjct: 190 EVLDTVSRLVIAGGVLVIYVATVTQLSRAVEALR-VQQCWVEPRAWETLQRGWNVVGLAV 248
Query: 235 RPRTTALVHTGYITFARRI 253
RP HT ++ ARR+
Sbjct: 249 RPEHLMRGHTAFLILARRL 267
>gb|AAK40752.1| Protein L-isoaspartate methyltransferase [Sulfolobus solfataricus]
Length = 256
Score = 145 bits (361), Expect = 7e-34
Identities = 82/255 (32%), Positives = 140/255 (54%), Gaps = 8/255 (3%)
Query: 2 IREGDKVVL-VDPRGKRYLITVSKRD--FHTDLGILKLEEIIGRNFGEAIKSHKGHEFKI 58
+ EGD VV+ +DP KR I+ +R TD G++ + +IG +G ++ G + +
Sbjct: 4 LNEGDPVVIWIDP--KRVYISKLERGKRLDTDKGVVFYDNLIGLEYGTSLTLKTGVKAYL 61
Query: 59 LRPRIVDYLDK-MKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGP 117
L+P I D K +KR Q+++PKD I+ ++ ++EAG GSG LT+ LA +
Sbjct: 62 LKPTIQDLYSKGLKRPSQVLYPKDIGYILTTLSLNQVKTVIEAGTGSGFLTISLALSLSE 121
Query: 118 EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVV 177
++ +Y+IRED K+A N G DR+ KLKDI EGI+E+ VD + LD+P P +
Sbjct: 122 NAKIYTYDIREDMQKVAKFNANVLGVQDRIVFKLKDIREGIDEKEVDAIFLDMPDPWNAI 181
Query: 178 EHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPR 237
++LKP + + P NQ+ + + ++ + +++ + +VK+ +RPR
Sbjct: 182 PKLYESLKPSSTIIIFVPTVNQIEKTYFAMK--NSGIIDIHVEELILREYQVKENAIRPR 239
Query: 238 TTALVHTGYITFARR 252
++HTG+I R+
Sbjct: 240 NIGIMHTGFIIRGRK 254
>gi|11497832 L-isoaspartyl protein carboxyl methyltransferase PimT, putative
[Archaeoglobus fulgidus] >gi|7483853|pir||H69276
L-isoaspartyl-protein carboxyl methyltransferase PimT
homolog - Archaeoglobus fulgidus
>gi|2650427|gb|AAB91017.1| (AE001091) L-isoaspartyl
protein carboxyl methyltransferase PimT, putative
[Archaeoglobus fulgidus]
Length = 247
Score = 122 bits (303), Expect = 4e-27
Identities = 79/248 (31%), Positives = 128/248 (50%), Gaps = 8/248 (3%)
Query: 7 KVVLVDPRGK-RYLITVSKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVD 65
K +V RGK +L+ + HT GI+ LEE+ G+++G+ +++H G +++I D
Sbjct: 2 KPPVVLTRGKYSFLVDRFEGKLHTHHGIINLEELRGKDYGDEVRTHLGVKYRIAPFNPAD 61
Query: 66 YLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYE 125
+ KRG + PKD I+AY G+SP I +AG GSG L +LA G VV+ E
Sbjct: 62 FFRHFKRGATPIMPKDIGAIIAYTGLSPDSLIFDAGTGSGILAAYLA-YFNKYGEVVTVE 120
Query: 126 IREDFAKLAWENIKWAGFDD--RVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAAKA 183
R DFAK+A EN + AG + ++ + + ++ E D + LD+ + A +
Sbjct: 121 KRPDFAKIARENFRTAGLKNIHQIVGDALAVADSLKVE-FDLITLDMKDDVAFIRKAKEI 179
Query: 184 LKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTALVH 243
LKPGG V Y P ++ ++ + F + +L D ++K+ R +T + H
Sbjct: 180 LKPGGHIVVYNPYIEAAREVYLEME--RRGFKELEAFELLRVDLDIKRVGTR-TSTKVWH 236
Query: 244 TGYITFAR 251
TGY+ F R
Sbjct: 237 TGYLVFGR 244
>pir||T48633 hypothetical protein T15N1.90 - Arabidopsis thaliana
>gi|7573309|emb|CAB87627.1| (AL163792) putative protein
[Arabidopsis thaliana]
Length = 370
Score = 116 bits (287), Expect = 3e-25
Identities = 80/235 (34%), Positives = 119/235 (50%), Gaps = 8/235 (3%)
Query: 2 IREGDKVVLVDPRGKRYLITVSKRD-FHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
I +GD V++ + + VSK G+ K + IG+ G + S+KG +L
Sbjct: 16 IEDGDLVIVYERHDVMKPVKVSKDGVLQNRFGVYKHSDWIGKPLGTKVFSNKGKFVYLLA 75
Query: 61 PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
P + + QI++ D + +V Y + PG ++E+G GSG+L+ LA V P G
Sbjct: 76 PTPELWTLVLSHRTQILYIADISFVVMYLEVVPGCVVLESGTGSGSLSTSLARAVAPTGH 135
Query: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY-EGIEEE---NVDHVILDLPQPERV 176
V S++ E A A E+ + G VT++++DI EG E+ D V LDLPQP
Sbjct: 136 VYSFDFHEQRAVSAREDFEKTGISSLVTVEVRDIQGEGFPEKLSGLADSVFLDLPQPWLA 195
Query: 177 VEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKK 231
V AAK LK G +++PC QV R E LR F++ RT VL+ EVK+
Sbjct: 196 VPSAAKMLKQDGVLCSFSPCIEQVQRTCEVLR---SDFIEIRTFEVLLRTYEVKE 247
>gi|8923586 hypothetical protein FLJ20628 [Homo sapiens]
>gi|7020859|dbj|BAA91300.1| (AK000635) unnamed protein
product [Homo sapiens]
Length = 477
Score = 106 bits (263), Expect = 2e-22
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 28 HTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYLDKMKRGPQIVHPKDAALIVA 87
+++ G + +I+G+ G+ ++S G ++ + RP + DY+ MKRG I PKD +I++
Sbjct: 181 NSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILS 240
Query: 88 YAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK-WAG---- 142
I+PGD ++EAG GSG ++LFL+ VG +GRV+S+E+R+D LA +N K W
Sbjct: 241 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL 300
Query: 143 -----FDDRVTIKLKDI---YEGIEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYT 194
+ D V KDI E I+ D V LD+ P + LK GG Y
Sbjct: 301 SHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV 360
Query: 195 PCSNQVMRLHEKLR 208
QV+ L + +R
Sbjct: 361 VNITQVIELLDGIR 374
>pir||F72480 probable beta-aspartate metyltransferase APE2486 - Aeropyrum pernix
(strain K1) >gi|5106191|dbj|BAA81502.1| (AP000064) 261aa
long hypothetical beta-aspartate metyltransferase
[Aeropyrum pernix]
Length = 261
Score = 104 bits (258), Expect = 8e-22
Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 13/259 (5%)
Query: 4 EGDKVVLV--DPRGKR--YLITVSKRD-FHTDLGILKLEEIIGRNFGEAIKSHKGHEFKI 58
+G VL+ +G+R Y + VS+ + T G++ I+G+ +G ++S G +
Sbjct: 3 QGCPAVLIAESAKGERRSYYVRVSEGSAYSTIAGVVTGRSILGKPWGVILRSRLG-TIAV 61
Query: 59 LRPRIVDYLDKM-KRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGP 117
++P + + ++ +R Q+++PKD+ +I G PG ++EAGVGSG +T LA + P
Sbjct: 62 VKPSLAELMEGFYERRTQVIYPKDSGMIAVLVGARPGARLLEAGVGSGFMTTVLAMGLCP 121
Query: 118 EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENV---DHVILDLPQPE 174
GR++ E+R + + A N++ AG D V ++L D+ E + D V+LD+P P
Sbjct: 122 TGRLIGLEVRSENLETARRNLEAAGLLDCVDLRLGDVRNPASVEGLGPFDGVVLDMPDPW 181
Query: 175 RVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECM 234
R +E + +KP V + P S Q+ +L + ++ + + +
Sbjct: 182 RALESISGEVKPSAVAVVFVPTSTQLEKL---ITNMPGGWVLQGAFETMARTVLMSPGAV 238
Query: 235 RPRTTALVHTGYITFARRI 253
RP TGYI RR+
Sbjct: 239 RPGEWLAGFTGYIVVLRRV 257
>gb|AAF56565.1| (AE003754) CG14544 gene product [Drosophila melanogaster]
Length = 317
Score = 99.8 bits (245), Expect = 3e-20
Identities = 76/264 (28%), Positives = 123/264 (45%), Gaps = 41/264 (15%)
Query: 27 FHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYLDKMKRGPQIVHPKDAALIV 86
F T+ G LK+E IIG +G ++ KG +L+P + + QI++ D ++I+
Sbjct: 46 FQTNYGSLKVENIIGVEYGSKVELSKGWAH-VLQPTPELWTQTLPHRTQIIYTPDISMII 104
Query: 87 AYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDR 146
+ PG +VE+G GSG+L+ + + P G + +++ E A A + + G D
Sbjct: 105 HQLEVRPGAVVVESGTGSGSLSHYFLRALKPTGHLHTFDFHEARADQARDEFRRHGIADF 164
Query: 147 VTIKLKDIYE---GIE-EENVDHVILDLPQPERVVEHAAKALK-PGGFFVAYTPCSNQVM 201
VT+ +D+ G E + D V LDLP P+ V HA KALK GG F +++PC Q
Sbjct: 165 VTVYHRDVCNLGFGAELDGKADAVFLDLPAPDLAVPHAFKALKLSGGRFCSFSPCIEQSQ 224
Query: 202 RLHEKLREF------------KDYFMKPRTINVLVFD----------------------Q 227
R ++L + ++ +K RT+ V+ + +
Sbjct: 225 RCIQELTKLGFNEIVSLEVLQQENVVKTRTLPVIDLEFLKLPKTDETTAATNALESKAPK 284
Query: 228 EVKKECMRPRTTALV-HTGYITFA 250
EVKK L HTG++TFA
Sbjct: 285 EVKKYLTSSNPQTLPGHTGFLTFA 308
>gb|AAG18973.1| (AE004998) L-isoaspartyl protein carboxyl methyltransferase; PimT2
[Halobacterium sp. NRC-1]
Length = 238
Score = 99.1 bits (243), Expect = 5e-20
Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 8/239 (3%)
Query: 14 RGKRYLITVSKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYLDKMKRG 73
RG R + + HTDLG+++ + GE +++H G F + R D + +R
Sbjct: 5 RGDREFLVAPGEELHTDLGVIEAPD--DPTPGETVETHLGEPFTVRELRGPDLFNHFERT 62
Query: 74 PQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKL 133
+ PKD L++ + G+S D +++AG G+G L +L G + V +YE DFA +
Sbjct: 63 GAPMMPKDIGLVMGHTGVSGADRVLDAGTGTGVLAAYLGR-AGAD--VTTYEQDADFAAV 119
Query: 134 AWENIKWAGFDDRVTIKLKDIYEGIEE-ENVDHVILDLPQPERVVEHAAKALKPGGFFVA 192
A EN+ AG D V+++ D+ ++ D + LD VV HA L GG
Sbjct: 120 ARENMSLAGVSDAVSVRAGDVTADLDALGTFDVLTLDTQDAPDVVAHADDLLVSGGQVAV 179
Query: 193 YTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTALVHTGYITFAR 251
Y+P + R+ + + + + RP T + HTGY+ FAR
Sbjct: 180 YSPFVENARATTQAARDAG--LVDIDAMETIQRRMDFDDRGSRPSTAGVGHTGYLLFAR 236
>pir||T24625 hypothetical protein W02A11.1 - Caenorhabditis elegans
>gi|3879583|emb|CAB04711.1| (Z81587) cDNA EST yk56g3.3
comes from this gene~cDNA EST yk56g3.5 comes from this
gene~cDNA EST yk213d3.3 comes from this gene~cDNA EST
yk213d3.5 comes from this gene [Caenorhabditis elegans]
>gi|3880444|emb|CAB04894.1| (Z82062) cDNA EST yk56g3.3
comes from this gene~cDNA EST yk56g3.5 comes from this
gene~cDNA EST yk213d3.3 comes from this gene~cDNA EST
yk213d3.5 comes from this gene [Caenorhabditis elegans]
Length = 312
Score = 89.7 bits (219), Expect = 3e-17
Identities = 64/206 (31%), Positives = 103/206 (49%), Gaps = 6/206 (2%)
Query: 2 IREGDKVVLVDPRGKRYLITVSK-RDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILR 60
I+EGD V++ G+ V + + G L+ E IIG+ +G+ + + G+ + ILR
Sbjct: 15 IQEGDTVIVYVTYGQMVPTIVKRGQTLMMKYGALRHEFIIGKRWGQRLSATAGYVY-ILR 73
Query: 61 PRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGR 120
P + + R QI++ D A I++ PG I E+G GSG+L+ +A V P G
Sbjct: 74 PTSDLWTRALPRRTQILYTADCAQILSLLDAKPGSVICESGTGSGSLSHAIALTVAPTGH 133
Query: 121 VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI-YEGIEEEN-VDHVILDLPQPERVVE 178
+ +++I E E K G T ++++ G EN D V LD+P P +
Sbjct: 134 LYTHDIDETRTHKVLEEFKVHGLGSVTTAVVRNVCTSGFHVENAADGVFLDVPAPWEAIP 193
Query: 179 HAAKAL--KPGGFFVAYTPCSNQVMR 202
AAK++ GG V+++PC QV R
Sbjct: 194 FAAKSIFRARGGRLVSFSPCLEQVQR 219
>pir||A70328 hypothetical protein aq_311 - Aquifex aeolicus
>gi|2983004|gb|AAC06616.1| (AE000683) putative protein
[Aquifex aeolicus]
Length = 248
Score = 88.5 bits (216), Expect = 7e-17
Identities = 67/253 (26%), Positives = 115/253 (44%), Gaps = 13/253 (5%)
Query: 3 REGDKVVLVDPRGKRYLITVSKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPR 62
+EG+ V++ K + K+ +LK +E+IG+ G I F++ RP
Sbjct: 5 KEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKPEGVKING-----FEVYRPT 59
Query: 63 IVDY-LDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRV 121
+ + L +R QI++PKD+ I ++ ++E G GSGAL L+ + G V
Sbjct: 60 LEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA---GEV 116
Query: 122 VSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDH-VILDLPQPERVVEHA 180
++E E+F K A +N+K V D + E + H +D+ +P +E
Sbjct: 117 WTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVREPWHYLEKV 176
Query: 181 AKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTA 240
K+L G P +NQV++L L ++YF + +L + E RP
Sbjct: 177 HKSLMEGAPVGFLLPTANQVIKL---LESIENYFGNLEVVEILHRHYKTISERFRPEDQM 233
Query: 241 LVHTGYITFARRI 253
+ HT Y+ F R++
Sbjct: 234 VAHTAYLVFGRKL 246
>emb|CAC11981.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 255
Score = 78.8 bits (191), Expect = 6e-14
Identities = 53/181 (29%), Positives = 87/181 (47%), Gaps = 2/181 (1%)
Query: 70 MKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRED 129
++R QI+ DA+ I+ G+ PG I+E GVGSG ++ ++ + +G + E ED
Sbjct: 67 IRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDED 126
Query: 130 FAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAAKALKPGGF 189
K A +N+ V DI + I ++ D VI D+P P V+ A +KPG
Sbjct: 127 NLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSV 186
Query: 190 FVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTALVHTGYITF 249
Y P +Q + L + ++ T+ ++ V++ RP + L HT +ITF
Sbjct: 187 ATFYLPNFDQSEKTVLSLSASGMHHLE--TVELMKRRILVREGATRPASDDLTHTAFITF 244
Query: 250 A 250
A
Sbjct: 245 A 245
>gb|AAC64273.1|AAC64273 (AF086832) unknown [Streptomyces coelicolor A3(2)]
Length = 168
Score = 73.0 bits (176), Expect = 3e-12
Identities = 42/133 (31%), Positives = 72/133 (53%), Gaps = 3/133 (2%)
Query: 123 SYEIREDFAKLAWENIK--WAGFDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHA 180
SYE REDFA++A +N++ + G + + D+ + + + +VD VILD+ P ++
Sbjct: 4 SYERREDFAEIAQQNVQRYFGGPHPAWQLTVGDLQDNLSDTDVDRVILDMLAPWECLDVV 63
Query: 181 AKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTA 240
KAL PGG Y + Q+ R E +RE F +P + ++ + V+ +RP
Sbjct: 64 KKALVPGGILCCYVATTTQLARTVESIREI-GCFNEPTSWETMIRNWHVEGLAVRPDHRM 122
Query: 241 LVHTGYITFARRI 253
+ HTG++ ARR+
Sbjct: 123 IGHTGFLLTARRL 135
>pir||T39235 probable translational repressor - fission yeast
(Schizosaccharomyces pombe) >gi|2370560|emb|CAB11496.1|
(Z98763) putative translational repressor
[Schizosaccharomyces pombe]
Length = 364
Score = 68.7 bits (165), Expect = 7e-11
Identities = 59/220 (26%), Positives = 99/220 (44%), Gaps = 13/220 (5%)
Query: 2 IREGDKVVLVDPRGKRYLITV-SKRDFHTDLGILKLEEIIGRNFGEAIKSHKGHEF-KIL 59
+ GD V R K + + +++ FH G E+IG+ +GE I S F +L
Sbjct: 10 VENGDLAVAWIGRNKLIPLHIEAEKTFHNQYGAFPHSEMIGKRYGEQIASTAKQGFIYLL 69
Query: 60 RPRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEG 119
+P + + QIV+ D ALI I+ G ++EAG GS +++ ++ VGP G
Sbjct: 70 QPTPELWTLALPHRTQIVYTPDIALIHQKLRITYGTRVIEAGTGSASMSHAISRTVGPLG 129
Query: 120 RVVSYEIREDFAKLAWENIKW------AGFDDRVTIK--LKDIYEGIEEENVDHVILDLP 171
R+ ++E + A + + G + +T + KD + E + VD + LDLP
Sbjct: 130 RLFTFEYHATRYQTALQEFREHEMLIDVGGNTHLTHRDVCKDGFLDTEVK-VDAIFLDLP 188
Query: 172 QPERVVEHAAKALK--PGGFFVAYTPCSNQVMRLHEKLRE 209
P + H + + ++PC Q+ E LRE
Sbjct: 189 APWEAIPHLSNHVNHDKSTRICCFSPCIEQIQHSAEALRE 228
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.143 0.423
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99182567
Number of Sequences: 2977
Number of extensions: 4291608
Number of successful extensions: 10953
Number of sequences better than 1.0e-10: 22
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10895
Number of HSP's gapped (non-prelim): 22
length of query: 253
length of database: 189,106,746
effective HSP length: 52
effective length of query: 201
effective length of database: 157,985,422
effective search space: 31755069822
effective search space used: 31755069822
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)