BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0284 (PAB0284) DE:Hypothetical protein
(197 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75159 hypothetical protein PAB0284 - Pyrococcus abyssi (st... 386 e-106
pir||F71181 hypothetical protein PH1731 - Pyrococcus horikoshii ... 310 7e-84
sp|Q58338|Y928_METJA HYPOTHETICAL PROTEIN MJ0928 >gi|2129071|pir... 141 4e-33
pir||F69043 conserved hypothetical protein MTH1329 - Methanobact... 139 2e-32
gi|11499373 protoporphyrinogen oxidase (hemK) [Archaeoglobus ful... 116 2e-25
gb|AAG19542.1| (AE005044) protoporphyrinogen oxidase; HemK [Halo... 101 5e-21
emb|CAC11261.1| (AL445063) N-methyl-transferase related protein ... 92 6e-18
pir||D75544 hemK protein - Deinococcus radiodurans (strain R1) >... 89 3e-17
gb|AAK41043.1| Conserved hypothetical protein [Sulfolobus solfat... 83 3e-15
emb|CAB57555.1| (Y18930) hypothetical protein [Sulfolobus solfat... 83 3e-15
emb|CAB61553.2| (AL133171) putative methyltransferase [Streptomy... 82 6e-15
pir||T31966 hypothetical protein C33C12.9 - Caenorhabditis elega... 80 1e-14
sp|P57269|HEMK_BUCAI HEMK PROTEIN HOMOLOG >gi|10038854|dbj|BAB12... 79 4e-14
pir||A83063 probable methyl transferase PA4664 [imported] - Pseu... 78 9e-14
gi|11526159 putative N6-DNA-methyltransferase [Homo sapiens] >gi... 76 4e-13
sp|P37186|HEMK_ECOLI HEMK PROTEIN >gi|2126016|pir||I83570 hemK p... 75 6e-13
gi|7019463 putative N6-DNA-methyltransferase [Homo sapiens] >gi|... 75 8e-13
gi|6320344 Ydr140wp [Saccharomyces cerevisiae] >gi|1077536|pir||... 74 1e-12
pir||B72640 hypothetical protein APE0554 - Aeropyrum pernix (str... 74 1e-12
gb|AAF73543.1| (AE002297) modification methylase, HemK family [C... 74 1e-12
sp|O66506|HEMK_AQUAE HEMK PROTEIN HOMOLOG >gi|7521589|pir||G7030... 73 3e-12
pir||E70124 protoporphyrinogen oxidase homolog - Lyme disease sp... 72 5e-12
pir||A82109 hemK protein VC2178 [imported] - Vibrio cholerae (gr... 72 5e-12
pir||G81952 HemK protein NMA0369 [imported] - Neisseria meningit... 71 1e-11
sp|P45253|HEMK_HAEIN HEMK PROTEIN HOMOLOG >gi|1075189|pir||H6412... 70 2e-11
pir||C71566 probable protoporphyrinogen oxidase - Chlamydia trac... 70 2e-11
pir||G82671 protoporphyrinogen oxidase XF1512 [imported] - Xylel... 70 2e-11
pir||G72369 hemK protein - Thermotoga maritima (strain MSB8) >gi... 70 2e-11
dbj|BAB10283.1| (AB008266) gene_id:MHJ24.13~similar to unknown p... 70 2e-11
pir||E81010 hemK protein NMB2065 [imported] - Neisseria meningit... 69 3e-11
dbj|BAB03843.1| (AP001507) unknown conserved protein [Bacillus h... 68 6e-11
>pir||C75159 hypothetical protein PAB0284 - Pyrococcus abyssi (strain Orsay)
>gi|5457864|emb|CAB49354.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 197
Score = 386 bits (980), Expect = e-106
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MAIHYNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAAKKAKF 60
MAIHYNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAAKKAKF
Sbjct: 1 MAIHYNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAAKKAKF 60
Query: 61 VVGLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLPGDDVKDEI 120
VVGLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLPGDDVKDEI
Sbjct: 61 VVGLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLPGDDVKDEI 120
Query: 121 DLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGFSTRIVKKE 180
DLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGFSTRIVKKE
Sbjct: 121 DLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGFSTRIVKKE 180
Query: 181 RFFFEELYVMRAELSSR 197
RFFFEELYVMRAELSSR
Sbjct: 181 RFFFEELYVMRAELSSR 197
>pir||F71181 hypothetical protein PH1731 - Pyrococcus horikoshii
>gi|3258162|dbj|BAA30845.1| (AP000007) 198aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 198
Score = 310 bits (786), Expect = 7e-84
Identities = 148/197 (75%), Positives = 180/197 (91%)
Query: 1 MAIHYNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAAKKAKF 60
MAI+YNGL+IE E VYEPAEDTFLLAE+LL+EV+ DDIVLDVGTG+GILALLAA++A+F
Sbjct: 1 MAIYYNGLKIESNEEVYEPAEDTFLLAESLLDEVKSDDIVLDVGTGTGILALLAARRARF 60
Query: 61 VVGLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLPGDDVKDEI 120
VVGLDINEKAI+LAW+NA++NGIKNVVF++SDLF N+RG F LI+FNPPYLPG+++KD++
Sbjct: 61 VVGLDINEKAINLAWKNAKINGIKNVVFILSDLFENIRGTFDLIVFNPPYLPGEEIKDKV 120
Query: 121 DLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGFSTRIVKKE 180
DLALIGGKTG EVI +FL V+DYL GRIL++YSSLTGL+V +AF+E+GFST IVK+
Sbjct: 121 DLALIGGKTGGEVISRFLGSVKDYLSSRGRILLIYSSLTGLDVEKAFKERGFSTSIVKRR 180
Query: 181 RFFFEELYVMRAELSSR 197
RFFFEELYVM+AELSSR
Sbjct: 181 RFFFEELYVMKAELSSR 197
>sp|Q58338|Y928_METJA HYPOTHETICAL PROTEIN MJ0928 >gi|2129071|pir||H64415 hypothetical
protein YDR140w homolog - Methanococcus jannaschii
>gi|1591599|gb|AAB98930.1| (U67536) protoporphyrinogen
oxidase (hemK) [Methanococcus jannaschii]
Length = 197
Score = 141 bits (353), Expect = 4e-33
Identities = 81/197 (41%), Positives = 123/197 (62%), Gaps = 8/197 (4%)
Query: 1 MAIHYNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAAKK-AK 59
M I G+++++ VYEPAED+ LL + L++ +D VL++G G+G++++ AKK AK
Sbjct: 1 MIIEIEGIKLKLHPEVYEPAEDSILLLKNLVDVKNKD--VLEIGVGTGLISIACAKKGAK 58
Query: 60 FVVGLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLP---GDDV 116
+VG+DIN A+ LA NA+LN + N+ F SDLF N+ GKF +ILFNPPYLP + +
Sbjct: 59 KIVGVDINPYAVKLAKENAKLNNV-NISFFESDLFENVTGKFDVILFNPPYLPTSEDEKI 117
Query: 117 KDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTG-LNVREAFEEKGFSTR 175
++ A GGK G E++ +F+ ++ +YL GG + I+ SSLTG + GF
Sbjct: 118 DSYLNFAFDGGKDGREILDRFIYELPNYLKKGGVVQILQSSLTGEKETINKLKPLGFKVE 177
Query: 176 IVKKERFFFEELYVMRA 192
I + + FEEL V+ A
Sbjct: 178 ISARLKVPFEELMVINA 194
>pir||F69043 conserved hypothetical protein MTH1329 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622435|gb|AAB85807.1| (AE000896) methyltransferase
related protein [Methanobacterium thermoautotrophicum]
Length = 196
Score = 139 bits (348), Expect = 2e-32
Identities = 86/195 (44%), Positives = 122/195 (62%), Gaps = 9/195 (4%)
Query: 3 IHYNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAAKKAKFVV 62
I Y ++I+ E+VYEPAEDTFLLA+ L +VRE D VL++GTG+G++A+ A++K V
Sbjct: 4 IRYGEIKIKTCENVYEPAEDTFLLADNL--DVREGDRVLEIGTGTGLVAIRASEKGD-VT 60
Query: 63 GLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRG-KFTLILFNPPYLP--GDDVK-D 118
D+N A+ NA +NG++ V + DLF + G KF +ILFN PYLP GDD D
Sbjct: 61 ATDVNPAAVKCTQENAIINGVELRV-LQGDLFDPVEGEKFDVILFNTPYLPATGDDATGD 119
Query: 119 EIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGL-NVREAFEEKGFSTRIV 177
+DLA GG G VI +FL +V +L PGGR+ +V SSL+ + + GF +
Sbjct: 120 VLDLAWNGGPDGRMVIDRFLDEVPAHLKPGGRVQLVQSSLSDTEKTLQKLADMGFDASVT 179
Query: 178 KKERFFFEELYVMRA 192
ER+FFEE+ ++ A
Sbjct: 180 ASERYFFEEIVLITA 194
>gi|11499373 protoporphyrinogen oxidase (hemK) [Archaeoglobus fulgidus]
>gi|6226464|sp|O28490|YH84_ARCFU HYPOTHETICAL PROTEIN
AF1784 >gi|7483929|pir||G69472 protoporphyrinogen
oxidase (hemK) homolog - Archaeoglobus fulgidus
>gi|2648761|gb|AAB89463.1| (AE000979) protoporphyrinogen
oxidase (hemK) [Archaeoglobus fulgidus]
Length = 177
Score = 116 bits (288), Expect = 2e-25
Identities = 67/179 (37%), Positives = 107/179 (59%), Gaps = 10/179 (5%)
Query: 16 VYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAAKKAKFVVGLDINEKAIDLAW 75
+YEPAED+ LL EA L E++ DD V++VG GSG +A K K ++ DI+ A
Sbjct: 2 IYEPAEDSELLLEAALRELKPDDEVIEVGAGSGFVAERLKGKCKCILTTDISPFAAMELR 61
Query: 76 RNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLPGDDVK---DEIDLALIGGKTGSE 132
R K + V++D+ + +R KF+L+LFNPPY+ +D D +D+A+ GGK G +
Sbjct: 62 R-------KGLDVVMTDIAKGIRKKFSLVLFNPPYVELEDELRRGDWLDVAIDGGKKGVK 114
Query: 133 VILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGFSTRIVKKERFFFEELYVMR 191
VI KFL +++ + GR +++ SS +V + +E+GF IV + FFE+L+ ++
Sbjct: 115 VIKKFLDSLDEIMAERGRAILIASSQNEPDVFDLIDERGFRYEIVGERGLFFEKLFAIK 173
>gb|AAG19542.1| (AE005044) protoporphyrinogen oxidase; HemK [Halobacterium sp.
NRC-1]
Length = 191
Score = 101 bits (250), Expect = 5e-21
Identities = 73/182 (40%), Positives = 103/182 (56%), Gaps = 13/182 (7%)
Query: 16 VYEPAEDTFLLAEALLEEVREDDI-VLDVGTGSG-ILALLAAKKAKFVVGLDINEKAIDL 73
VY+PAEDT LLA A + E+ + VLDVGTGSG + A + + VVG D+N A+
Sbjct: 14 VYQPAEDTHLLATAAVGELDDPYARVLDVGTGSGYVAATVRDETGADVVGTDLNPFAVRQ 73
Query: 74 AWRNAQLNGIKNVVFVVSDLFRNLRGK-FTLILFNPPYLPG-DDVKDE-IDLALIGGKTG 130
A + V V DL R F ++FNPPYLP DD +D+ +D+AL GG TG
Sbjct: 74 A-------ADRGVPVVRGDLVAPFRDDAFDAVVFNPPYLPREDDTRDDWMDVALSGGDTG 126
Query: 131 SEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFE-EKGFSTRIVKKERFFFEELYV 189
VI F V L P G ++++ S+LTG++ A+ ++GFS + +E F FE L V
Sbjct: 127 RRVIESFFDAVGRVLAPDGVVIMLVSTLTGVDEVAAYAGDRGFSAAAISEESFPFETLTV 186
Query: 190 MR 191
++
Sbjct: 187 LK 188
>emb|CAC11261.1| (AL445063) N-methyl-transferase related protein [Thermoplasma
acidophilum]
Length = 182
Score = 91.7 bits (224), Expect = 6e-18
Identities = 64/194 (32%), Positives = 104/194 (52%), Gaps = 12/194 (6%)
Query: 3 IHYNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAAKKAKFVV 62
+HY L I + VY P+ED+FL+ +E +++G G+GI+++ K+ +
Sbjct: 1 MHYCDLDIAECDGVYPPSEDSFLI----IEYASCSGKAIEIGCGTGIVSICFLKRGCDIE 56
Query: 63 GLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLPGDDVKDEIDL 122
+DI++ A++ A NA NG+ V+ SDLF + G + ILFN PY+P V+ E D
Sbjct: 57 AVDISDLAVECAKDNASRNGLTLKVY-RSDLFSGVSGTYDTILFNAPYIP---VEGE-DA 111
Query: 123 ALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGFSTRIVKKERF 182
+ GG+ EV+ +FL ++L G+I IV S LT + F G+ I+KK F
Sbjct: 112 SWSGGR-NLEVVSRFLGQAREHLSASGQIYIVLSDLT--DNEGMFRMMGYDYFIIKKISF 168
Query: 183 FFEELYVMRAELSS 196
FE + + + L +
Sbjct: 169 EFEAIVLYKLTLKA 182
>pir||D75544 hemK protein - Deinococcus radiodurans (strain R1)
>gi|6457913|gb|AAF09827.1|AE001885_11 (AE001885) hemK
protein [Deinococcus radiodurans]
Length = 278
Score = 89.3 bits (218), Expect = 3e-17
Identities = 61/162 (37%), Positives = 87/162 (53%), Gaps = 12/162 (7%)
Query: 3 IHYNGLRIEVEESVYEPAEDTFLLAEALLEEVR--EDDIVLDVGTGSGILAL--LAAKKA 58
+ + G+R+ + P +T L LEE+R E VLDVGTG+G LAL AA
Sbjct: 77 VEWGGVRLTSDARALVPRPETEWLLHLALEELRRVEKPRVLDVGTGTGALALGLKAAIPQ 136
Query: 59 KFVVGLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLPGDD--- 115
V D++ +A+ LA NA L+G+ +V FV L L G F LI+ NPPYLP D
Sbjct: 137 AEVTATDLSPEALSLARENAALSGL-DVKFVEGSLLAGLSGPFNLIVSNPPYLPTADRAT 195
Query: 116 ----VKDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILI 153
V+ + DLAL G+ G +V +++ L+PGG +L+
Sbjct: 196 ADPEVRHDPDLALYAGEDGLDVARPLVAEAAAALVPGGALLL 237
>gb|AAK41043.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 207
Score = 82.7 bits (201), Expect = 3e-15
Identities = 56/162 (34%), Positives = 88/162 (53%), Gaps = 12/162 (7%)
Query: 3 IHYNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAAKKAKFVV 62
I + G+R+ + + YEP++DT +L L V + D VLD+G+GSGIL + + VV
Sbjct: 7 IEFRGIRLCLNDQTYEPSDDTDILLSLL--RVGKGDKVLDMGSGSGILGIWSLMMGGKVV 64
Query: 63 GLDINEKAIDLAWRNAQLNGIKNVV----FVVSDLFRNLRG-KFTLILFNPPYLPGDDVK 117
+DIN A + ++N + N + DL LR F + +FNPPYLP ++
Sbjct: 65 FVDINPYATLSTLCSLKVNNLYNTPNYYGVLNCDLLSCLRKYDFDVAIFNPPYLPVEEYN 124
Query: 118 DEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLT 159
+ I+ + GG GS+V++ FL V+ RI +YSSL+
Sbjct: 125 EWIEYSWSGGNDGSKVLIDFLKTVK-----ANRIYTLYSSLS 161
>emb|CAB57555.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 207
Score = 82.7 bits (201), Expect = 3e-15
Identities = 56/162 (34%), Positives = 88/162 (53%), Gaps = 12/162 (7%)
Query: 3 IHYNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAAKKAKFVV 62
I + G+R+ + + YEP++DT +L L V + D VLD+G+GSGIL + + VV
Sbjct: 7 IEFRGIRLCLNDQTYEPSDDTDILLSLL--RVGKGDKVLDMGSGSGILGIWSLMMGGKVV 64
Query: 63 GLDINEKAIDLAWRNAQLNGIKNVV----FVVSDLFRNLRG-KFTLILFNPPYLPGDDVK 117
+DIN A + ++N + N + DL LR F + +FNPPYLP ++
Sbjct: 65 FVDINPYATLSTLCSLKVNNLYNTPNYYGVLNCDLLSCLRKYDFDVAIFNPPYLPVEEYN 124
Query: 118 DEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLT 159
+ I+ + GG GS+V++ FL V+ RI +YSSL+
Sbjct: 125 EWIEYSWSGGNDGSKVLIDFLKTVK-----ANRIYTLYSSLS 161
>emb|CAB61553.2| (AL133171) putative methyltransferase [Streptomyces coelicolor
A3(2)]
Length = 220
Score = 81.5 bits (198), Expect = 6e-15
Identities = 72/208 (34%), Positives = 99/208 (46%), Gaps = 30/208 (14%)
Query: 16 VYEPAEDTFLLAEALLEE-VREDDIVLDVGTGSGILALLAAKKAKFVVGLDINEKAIDLA 74
VY P EDT LLA AL +E + VLDVGTGSG LAL AA + V +D++ +A+ A
Sbjct: 12 VYAPQEDTALLAGALSDESLPPGAAVLDVGTGSGALALAAAGRGGRVTAVDVSWRAVCAA 71
Query: 75 WRNAQLNGIKNVVFVVSDLFRNLRGK-FTLILFNPPYLPGDDVKDE---IDLALIGGKTG 130
NA G++ + +LF +RG+ F L+L NPPY+P A G G
Sbjct: 72 RLNAVRAGLR-IRVRHGNLFTPVRGESFDLVLANPPYVPAPATGRRPRGAARAWDAGHDG 130
Query: 131 SEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREA-FEEKGFSTRIVKKERFFF----- 184
V+ + +V L PGG +L+V S+L+ EA E G + ++ R F
Sbjct: 131 RMVLDRICLEVPRLLRPGGVLLLVQSALSDPARTEALLREAGLKAAVTRRRRIAFGPVVR 190
Query: 185 ------------------EELYVMRAEL 194
EEL V+RAEL
Sbjct: 191 GRERWLRQRGLLSLADYEEELVVVRAEL 218
>pir||T31966 hypothetical protein C33C12.9 - Caenorhabditis elegans
>gi|2315591|gb|AAB66061.1| (AF016662) C33C12.9 gene
product [Caenorhabditis elegans]
Length = 262
Score = 80.4 bits (195), Expect = 1e-14
Identities = 64/216 (29%), Positives = 100/216 (45%), Gaps = 41/216 (18%)
Query: 16 VYEPAEDTFLLAEAL---LEEVREDD--IVLDVGTGSGILALLAAKKAK---FVVGLDIN 67
VYEPAEDTFLL +A+ ++E+R D +VL++G GSG+++ + V D+N
Sbjct: 31 VYEPAEDTFLLIDAIEKDIKEIRSRDPKLVLEIGCGSGVVSTFVNQALGGNVTSVATDLN 90
Query: 68 EKAIDLAWRNAQLNGIKNVVFVVSDLF---RNLRGKF----------------------- 101
A+D+ A+LN IK + V +DLF NL GK
Sbjct: 91 PHALDVTLETAKLNDIK-IDVVRTDLFAGLENLLGKVGKVREKFEKLKKNHKSRRLLKKI 149
Query: 102 -----TLILFNPPYLPGDDV-KDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVY 155
++LFNPPY+P D+ K I+L GG+TG + + L V + L P G +V
Sbjct: 150 PRKLVDVLLFNPPYVPTDEEPKSNIELTYAGGRTGRSTLDRLLPRVPELLSPRGVFYLVA 209
Query: 156 SSLTGLNVREAFEEKGFSTRIVKKERFFFEELYVMR 191
+ + + + + R E LY+++
Sbjct: 210 LHSNDIPALLKEHSEQMTVSVSMERRCGIEHLYILK 245
>sp|P57269|HEMK_BUCAI HEMK PROTEIN HOMOLOG >gi|10038854|dbj|BAB12889.1| (AP001118) hemK
protein [Buchnera sp. APS]
Length = 277
Score = 78.8 bits (191), Expect = 4e-14
Identities = 53/164 (32%), Positives = 87/164 (52%), Gaps = 10/164 (6%)
Query: 19 PAEDTFLLAEALLEEVREDDI-VLDVGTGSGILAL-LAAKKAKF-VVGLDINEKAIDLAW 75
P DT +L E L +++ + +LD+GTG G +AL LA+ + + ++G+D +E A+ +A
Sbjct: 91 PRPDTEILVERALSKIKSNSACILDLGTGCGAIALALASINSNWNIIGIDKSENALAIAR 150
Query: 76 RNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLPGDDVK-------DEIDLALIGGK 128
NA KNV F SD F N++ KF +I+ NPPY+ ++K E ALI
Sbjct: 151 INASKLNFKNVTFFFSDWFLNIKKKFNIIVSNPPYVSKKEIKFFKKDIFFEPLSALISDN 210
Query: 129 TGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGF 172
G I + + + YL GG ++I + + V+ F++ F
Sbjct: 211 NGLSDIENIIKNSKHYLFYGGWLMIEHGWRQKVKVQYLFKKYNF 254
>pir||A83063 probable methyl transferase PA4664 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950919|gb|AAG08051.1|AE004880_7 (AE004880) probable
methyl transferase [Pseudomonas aeruginosa]
Length = 276
Score = 77.6 bits (188), Expect = 9e-14
Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 11/177 (6%)
Query: 8 LRIEVEESVYEPAEDTFLLAEALLEEVREDDI-VLDVGTGSGILALLAAKKAKF--VVGL 64
L +EV P DT LL E L + D VLD+GTG+G +AL A + V +
Sbjct: 79 LDLEVAPHTLIPRPDTELLVETALATLAADTATVLDLGTGTGAIALALASERPLWTVTAV 138
Query: 65 DINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGK-FTLILFNPPYLPGDD-------V 116
D E+A+ LA RN Q ++NV S F L G+ F +I+ NPPY+P D V
Sbjct: 139 DRVEEAVALAERNRQRLLLENVEVRRSHWFSALDGRRFRMIVGNPPYIPASDPHLSEGDV 198
Query: 117 KDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGFS 173
+ E AL+ G G + I + ++ +LL G +L+ + G VRE +GF+
Sbjct: 199 RFEPKSALVAGSDGLDDIRQIVAQAPRHLLDEGWLLLEHGYDQGAAVRELLGARGFA 255
>gi|11526159 putative N6-DNA-methyltransferase [Homo sapiens]
>gi|9988059|sp|Q9Y5N5|N6M1_HUMAN PUTATIVE
N6-DNA-METHYLTRANSFERASE (PRED28 PROTEIN) (M.HSAHEMK2P)
>gi|7717305|emb|CAB90428.1| (AL163248) putative
N6-DNA-methyltransferase Accession No. AF139682 [Homo
sapiens]
Length = 214
Score = 75.7 bits (183), Expect = 4e-13
Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 16/153 (10%)
Query: 16 VYEPAEDTFLLAEAL---LEEVREDDIVLDVGTGSGI----LALLAAKKAKFVVGLDINE 68
VYEPAEDTFLL +AL E+ +I L+VG+GSG+ LA + +A ++ DIN
Sbjct: 22 VYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVSAFLASMIGPQALYMC-TDINP 80
Query: 69 KAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFT----LILFNPPYL---PGDDVKDEID 121
+A A+ N + ++ V++DL + L + T L++FNPPY+ P + I+
Sbjct: 81 EAAACTLETARCNKV-HIQPVITDLVKGLLPRLTEKVDLLVFNPPYVVTPPQEVGSHGIE 139
Query: 122 LALIGGKTGSEVILKFLSDVEDYLLPGGRILIV 154
A GGK G EV+ +F V D L P G +V
Sbjct: 140 AAWAGGKNGREVMDRFFPLVPDLLSPKGLFYLV 172
>sp|P37186|HEMK_ECOLI HEMK PROTEIN >gi|2126016|pir||I83570 hemK protein (EC 1.3.3.-) -
Escherichia coli >gi|968931|gb|AAC43438.1| (U18555)
possible protoporphyrinogen oxidase [Escherichia coli]
>gi|1651602|dbj|BAA36070.1| (D90756) Protoporphyrinogen
oxidase (EC 1.3.3.4) hemK [Escherichia coli]
>gi|1651610|dbj|BAA36080.1| (D90757) Protoporphyrinogen
oxidase (EC 1.3.3.4) hemK [Escherichia coli]
>gi|1787463|gb|AAC74296.1| (AE000219) possible
protoporphyrinogen oxidase [Escherichia coli K12]
Length = 277
Score = 74.9 bits (181), Expect = 6e-13
Identities = 58/176 (32%), Positives = 87/176 (48%), Gaps = 11/176 (6%)
Query: 8 LRIEVEESVYEPAEDTFLLAEALLEEVREDDI-VLDVGTGSGILALLAAKKAKF--VVGL 64
L + V + P DT L E L + E +LD+GTG+G +AL A + ++ +
Sbjct: 80 LPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAV 139
Query: 65 DINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRG-KFTLILFNPPY-------LPGDDV 116
D A+ LA RNAQ IKN+ + SD F L G +F +I+ NPPY L DV
Sbjct: 140 DRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDV 199
Query: 117 KDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGF 172
+ E AL+ +G I+ + + L+ GG +L+ + G VR+AF G+
Sbjct: 200 RFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGY 255
>gi|7019463 putative N6-DNA-methyltransferase [Homo sapiens]
>gi|5052364|gb|AAD38520.1|AF139682_1 (AF139682) putative
N6-DNA-methyltransferase; N6AMT1 [Homo sapiens]
Length = 214
Score = 74.5 bits (180), Expect = 8e-13
Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 16/153 (10%)
Query: 16 VYEPAEDTFLLAEAL---LEEVREDDIVLDVGTGSGI----LALLAAKKAKFVVGLDINE 68
VYEPAEDTFLL +AL E+ +I L+VG+GSG+ LA + +A ++ DIN
Sbjct: 22 VYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVSAFLASMIGPQALYMC-TDINP 80
Query: 69 KAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFT----LILFNPPYL---PGDDVKDEID 121
+A A+ N + ++ V++DL + L + T L++FNPPY+ P + I+
Sbjct: 81 EAAACTLETARCNKV-HIQPVITDLVKGLLPRLTEKVDLLVFNPPYVVTPPQEVGSHGIE 139
Query: 122 LALIGGKTGSEVILKFLSDVEDYLLPGGRILIV 154
A GG+ G EV+ +F V D L P G +V
Sbjct: 140 AAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLV 172
>gi|6320344 Ydr140wp [Saccharomyces cerevisiae] >gi|1077536|pir||S51868
hypothetical protein YDR140w - yeast (Saccharomyces
cerevisiae) >gi|665673|emb|CAA88222.1| (Z48179) unknown
[Saccharomyces cerevisiae]
Length = 221
Score = 73.7 bits (178), Expect = 1e-12
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 27/169 (15%)
Query: 14 ESVYEPAEDTFLLAEALLEEV--------REDDIVLDVGTGSGILAL------LAAKKAK 59
+ VYEPAED+FL+ + L +E IV ++G+GSGI+ + ++
Sbjct: 12 DKVYEPAEDSFLILDCLEKEHDFLKQKFGNRLAIVCEIGSGSGIVTTFLMQNKIIPQENS 71
Query: 60 FVVGLDINEKAIDLAWRNAQLNGIKNVVFVV--SDLFRNLRG-KFTLILFNPPYLPGDDV 116
+ +DIN A++ A+LN K+ V +DL ++R + +++FNPPY+P + V
Sbjct: 72 IHLAVDINPWALEATLDTAKLNSCKSSFLEVIQADLNSSIRNNQVDVLIFNPPYVPAECV 131
Query: 117 KDE----------IDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVY 155
D +DLAL+GGK G + K L +E L P G I++
Sbjct: 132 PDVPGSREEADQWLDLALLGGKDGMAITDKLLRQLEQILSPDGVAYILF 180
>pir||B72640 hypothetical protein APE0554 - Aeropyrum pernix (strain K1)
>gi|5104207|dbj|BAA79522.1| (AP000060) 215aa long
hypothetical protein [Aeropyrum pernix]
Length = 215
Score = 73.7 bits (178), Expect = 1e-12
Identities = 63/197 (31%), Positives = 90/197 (44%), Gaps = 23/197 (11%)
Query: 8 LRIEVEESVYEPAEDTFLLAEALLEEVREDDI---VLDVGTGSGILALLAAKK--AKFVV 62
+ + V Y P++DT LL EA+ RE + LD+GTG+G LAL A + + V
Sbjct: 27 IAVYVNSCTYPPSDDTILLLEAMEALRREGRVYGSALDLGTGNGALALGAVEVLGVRRVA 86
Query: 63 GLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLP-------GDD 115
+D A A+ + V L+G F + L NPPYLP G
Sbjct: 87 AVD----AYPCPALAARATLPPQALVAVCPYASCLKGGFDIALVNPPYLPEKPPPPGGQG 142
Query: 116 VKDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGFSTR 175
+ A G E +++ + + L G +L VYSSL+ + +E GFSTR
Sbjct: 143 CSPTLSEAWAG-----EGVMRGMLEAAGRL--AGEVLTVYSSLSSVTPQEVLGAMGFSTR 195
Query: 176 IVKKERFFFEELYVMRA 192
I+ ERFF E L V+ A
Sbjct: 196 ILASERFFMERLEVVHA 212
>gb|AAF73543.1| (AE002297) modification methylase, HemK family [Chlamydia
muridarum]
Length = 290
Score = 73.7 bits (178), Expect = 1e-12
Identities = 62/201 (30%), Positives = 95/201 (46%), Gaps = 18/201 (8%)
Query: 3 IHYNGLRIEVEESVYEPAEDTFLLAEAL---LEEVREDDIVLDVGTGSGILALLAAKKAK 59
+H+ G+ ++V V P ++T + E + L+ +E I DV GSG + L K
Sbjct: 73 VHFLGIELQVSPEVLIPRQETEIFVEKIIGYLQTHKEKKIFYDVCCGSGCIGLSVKKHCP 132
Query: 60 FV--VGLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLPGDD-- 115
V V DI +A+ +A NA+ N + V F+ DLF R + NPPYL +
Sbjct: 133 HVHVVLSDICSQALAVAKSNAKRNDLI-VDFLCGDLFEPFRIPADAFVCNPPYLSYKEFF 191
Query: 116 -VKDEIDL-----ALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEE 169
V E+ AL+GG +G E + + L+PGG + S G +V++ F +
Sbjct: 192 KVDPEVRCHEPWKALVGGVSGLEFYHRIAEHIHKILVPGGVGWLEIGSNQGESVKKIFRD 251
Query: 170 KGFSTRIVKK----ERFFFEE 186
KG S + K +RFFF E
Sbjct: 252 KGISGCVFKDYAQLDRFFFLE 272
>sp|O66506|HEMK_AQUAE HEMK PROTEIN HOMOLOG >gi|7521589|pir||G70309 protoporphyrinogen
oxidase - Aquifex aeolicus >gi|2982836|gb|AAC06458.1|
(AE000673) protoporphyrinogen oxidase [Aquifex aeolicus]
Length = 281
Score = 72.6 bits (175), Expect = 3e-12
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 13/185 (7%)
Query: 7 GLRIEVEESVYEPAEDTFLLAEALLEEVREDD--IVLDVGTGSGILAL-LAAKKAKFVV- 62
G +V++ V P +T +L E LE + +D + ++G+G+G +++ L ++ K V+
Sbjct: 82 GRVFKVKKGVLVPRPETEILIERTLELIPQDREMVGFELGSGTGCISINLLIERPKLVMY 141
Query: 63 GLDINEKAIDLAWRNAQLNGIKNVVFV-VSDLFRNLRG-KFTLILFNPPYLPG------- 113
D+N A++L NA+L+ + + +FV + + F ++G KF I+ NPPY+P
Sbjct: 142 ATDVNPDAVELTKENAKLHKVDDRLFVFLGNAFEPVKGMKFDFIVSNPPYIPENFWEILP 201
Query: 114 DDVKDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGFS 173
++VK E +LIGGK G E + +L G I + G V+E E+K F
Sbjct: 202 EEVKKEGYTSLIGGKKGWEFYELIAEEGTKHLKENGFIALEIGHDQGKVVKELLEKKCFK 261
Query: 174 TRIVK 178
I K
Sbjct: 262 VNIFK 266
>pir||E70124 protoporphyrinogen oxidase homolog - Lyme disease spirochete
>gi|2688095|gb|AAC66591.1| (AE001130) protoporphyrinogen
oxidase, putative [Borrelia burgdorferi]
Length = 286
Score = 71.8 bits (173), Expect = 5e-12
Identities = 53/180 (29%), Positives = 97/180 (53%), Gaps = 11/180 (6%)
Query: 5 YNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDI--VLDVGTGSGILAL-LAAKKAKFV 61
+ G+ + + V P DT LAE L +++++ +LD+ GSG + L +A K V
Sbjct: 73 FMGIEFSLNKHVLIPRFDTECLAEEALIQIQQNGFKKILDLCCGSGCIGLSIAYYIRKKV 132
Query: 62 VGLDINEKAIDLAWRNAQLNGIKNVVFVV-SDLFRNLRGKFTLILFNPPYLPGDD----- 115
+ DI+ KA+ + +N + ++ V ++ S+L + ++GK +I+ NPPYL ++
Sbjct: 133 ILSDISTKALQIVEKNTKKLKLEKFVEIIHSNLLKCIKGKLDIIITNPPYLNKEELEIKN 192
Query: 116 -VKDEIDLALIG-GKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGFS 173
+K E AL+G GK G + K L+ ++ L P G I+I + ++++ +KGFS
Sbjct: 193 KIKKEPTKALLGFGKDGLNISRKILNQAKEKLSPNGLIIIESAPWQIKSLKDFAIKKGFS 252
>pir||A82109 hemK protein VC2178 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9656732|gb|AAF95323.1| (AE004289) hemK
protein [Vibrio cholerae]
Length = 286
Score = 71.8 bits (173), Expect = 5e-12
Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 12/185 (6%)
Query: 8 LRIEVEESVYEPAEDTFLLAEALLEEVRE-DDIVLDVGTGSGILALLAAKK--AKFVVGL 64
L ++V S P DT L E L++ D +LD+GTG+G +AL A + + V G+
Sbjct: 84 LPLKVSPSTLIPRPDTERLVELALDKAALIDGELLDLGTGTGAIALALASELPTRQVTGI 143
Query: 65 DINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRG--KFTLILFNPPY-------LPGDD 115
D+ +A +LA NA I N F F L KF LI+ NPPY L D
Sbjct: 144 DLRPEAAELARENATRLAIHNAQFFQGSWFSPLADGTKFALIVSNPPYIEENDPHLSLGD 203
Query: 116 VKDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGFSTR 175
V+ E AL+ + G I + +LL GG +L + G+ VR + G+
Sbjct: 204 VRFEPKSALVAAENGLADIRHISTHAPHFLLDGGWLLFEHGYDQGVAVRTILRDLGYQNI 263
Query: 176 IVKKE 180
I +++
Sbjct: 264 ITEQD 268
>pir||G81952 HemK protein NMA0369 [imported] - Neisseria meningitidis (group A
strain Z2491) >gi|7379122|emb|CAB83670.1| (AL162753)
HemK protein [Neisseria meningitidis Z2491]
Length = 273
Score = 70.6 bits (170), Expect = 1e-11
Identities = 61/184 (33%), Positives = 85/184 (46%), Gaps = 13/184 (7%)
Query: 2 AIHYNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAA--KKAK 59
A + G R V SV P +T L EA+L + E+ V D+GTGSG +A+ A +
Sbjct: 67 AREFYGRRFTVNPSVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDA 126
Query: 60 FVVGLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRN---LRGKFTLILFNPPYLP-GD- 114
FV DI+ A++ A +NA G + V F F GK+ +I+ NPPY+ GD
Sbjct: 127 FVRASDISPPALETARKNAADLGAR-VEFAYGSWFDTDMPSEGKWDIIVSNPPYIENGDK 185
Query: 115 -----DVKDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEE 169
D++ E +AL G I D L GG +L+ + G VR E
Sbjct: 186 HLSQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE 245
Query: 170 KGFS 173
GFS
Sbjct: 246 NGFS 249
>sp|P45253|HEMK_HAEIN HEMK PROTEIN HOMOLOG >gi|1075189|pir||H64129 hemK protein (EC
1.3.3.-) - Haemophilus influenzae (strain Rd KW20)
>gi|1574403|gb|AAC23208.1| (U32830) hemK protein (hemK)
[Haemophilus influenzae Rd]
Length = 292
Score = 70.2 bits (169), Expect = 2e-11
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 25/186 (13%)
Query: 8 LRIEVEESVYEPAEDTFLLAEALL----EEVREDDI---VLDVGTGSGILAL-LAAKKAK 59
L + V + P DT +L E L E++ E+ +LD+GTG+G +AL LA++ A
Sbjct: 83 LPLNVSKGTLIPRPDTEILVEKALQIALEKLEENPPHFRILDLGTGTGAIALALASELAP 142
Query: 60 F---------VVGLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPY 110
++G+D+ + LA NA+ N + NV F+ S F N+ GKF LI+ NPPY
Sbjct: 143 ICQKRHIPLEIIGVDLMSDVVALAQSNAERNQL-NVEFLQSRWFDNITGKFDLIVSNPPY 201
Query: 111 LPGD-------DVKDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNV 163
+ DV+ E AL+ G + + YL G +L+ + G V
Sbjct: 202 IDAQDEHLHQGDVRFEPLSALVANDEGYADLRHIIELASSYLNSNGVLLLEHGWQQGEKV 261
Query: 164 REAFEE 169
R F+E
Sbjct: 262 RSIFQE 267
>pir||C71566 probable protoporphyrinogen oxidase - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328414|gb|AAC67614.1|
(AE001277) N6-adenine-specific DNA methylase [Chlamydia
trachomatis]
Length = 290
Score = 70.2 bits (169), Expect = 2e-11
Identities = 58/201 (28%), Positives = 97/201 (47%), Gaps = 18/201 (8%)
Query: 3 IHYNGLRIEVEESVYEPAEDTFLLAEAL---LEEVREDDIVLDVGTGSGILALLAAKKAK 59
+H+ G+ ++V V P ++T + E + L+ +E DV GSG + L K
Sbjct: 73 VHFLGVELQVTPQVLIPRQETEIFVEQIIGYLQMHKEKTTFYDVCCGSGCIGLAVRKHCP 132
Query: 60 FV-VGL-DINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRGKFTLILFNPPYLPGDDVK 117
V V L DI+ +A+ +A NA+ N + V F++ DLF +++ NPPYL +
Sbjct: 133 HVRVTLSDISPEALAIAESNARSNALA-VDFLLGDLFDPFSFPADVLVCNPPYLSYKEFF 191
Query: 118 D--------EIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEE 169
+ E AL+GG +G E + + + L+ GG + S G ++++ F
Sbjct: 192 ESDPEVRCHEPWKALVGGVSGLEFYHRIATHIHKILVSGGVGWLEIGSTQGEDIKQIFHA 251
Query: 170 KGFSTRIVKK----ERFFFEE 186
KG R++K +RFFF E
Sbjct: 252 KGIRGRVLKDYAQLDRFFFLE 272
>pir||G82671 protoporphyrinogen oxidase XF1512 [imported] - Xylella fastidiosa
(strain 9a5c) >gi|9106546|gb|AAF84321.1|AE003981_3
(AE003981) protoporphyrinogen oxidase [Xylella
fastidiosa]
Length = 275
Score = 70.2 bits (169), Expect = 2e-11
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 12/176 (6%)
Query: 8 LRIEVEESVYEPAEDTFLLAEALLEEV--REDDIVLDVGTGSGILALLAA--KKAKFVVG 63
L + V + P +T L E L+ + + V D+GTGSG +AL A + V+
Sbjct: 76 LDVMVSSATLIPRAETETLVEQALQRLDHASERRVADLGTGSGAIALAIACERPQAQVLA 135
Query: 64 LDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNLRG-KFTLILFNPPY-------LPGDD 115
D + A+D+A RNA +G+ +VVF D + L G +F LI+ NPPY L D
Sbjct: 136 TDNSAAALDIAARNASAHGLNHVVFREGDWYEALLGERFDLIVSNPPYIAVTDPHLTQGD 195
Query: 116 VKDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKG 171
++ E ALI G G + + + YL PGG +++ + G +R G
Sbjct: 196 LRFEPPSALISGGDGLDALRILTAGAPAYLRPGGWLVMEHGWDQGAAMRTLLHTAG 251
>pir||G72369 hemK protein - Thermotoga maritima (strain MSB8)
>gi|4980999|gb|AAD35573.1|AE001726_7 (AE001726) hemK
protein [Thermotoga maritima]
Length = 282
Score = 69.9 bits (168), Expect = 2e-11
Identities = 49/145 (33%), Positives = 76/145 (51%), Gaps = 12/145 (8%)
Query: 5 YNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDI--VLDVGTGSGILALLAAKKAKFVV 62
+ GL VEE V+ P +T L E LE +R+ I V D+GTGSG + + AK + +V
Sbjct: 88 FMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIV 147
Query: 63 -GLDINEKAIDLAWRNAQLNGIKNVVFV----VSDLFRNLRGKFTLILFNPPYLPGD--- 114
D++ KA+++A +NA+ +G+ + FV + F+ +IL NPPY+
Sbjct: 148 FATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHL 207
Query: 115 --DVKDEIDLALIGGKTGSEVILKF 137
DV E AL GG+ G + +F
Sbjct: 208 PKDVLFEPPEALFGGEDGLDFYREF 232
>dbj|BAB10283.1| (AB008266) gene_id:MHJ24.13~similar to unknown protein~sp|P74003
[Arabidopsis thaliana]
Length = 377
Score = 69.9 bits (168), Expect = 2e-11
Identities = 52/166 (31%), Positives = 80/166 (47%), Gaps = 20/166 (12%)
Query: 4 HYNGLRIEVEESVYEPAEDTFLLAEALLEEVRED-----DIVLDVGTGSGILALLAAK-- 56
H+ L + VEE V P +T L+ + + E V D DI D+GTGSG +A+ AK
Sbjct: 163 HWRDLVLCVEEGVLIPRPETELIVDMVEELVTRDEWFKKDIWADLGTGSGAIAIGIAKVL 222
Query: 57 -KAKFVVGLDINEKAIDLAWRNAQLNGIKNVVFVVS----DLFRNLRGKFTLILFNPPYL 111
V+ D++ AI +A N Q ++ ++ V + ++L GK ++ NPPY+
Sbjct: 223 GSRGRVIATDLSPVAIAVAGHNVQRYSLEGMIEVREGSWFEPLKDLEGKLVGLVSNPPYI 282
Query: 112 PGDDV--------KDEIDLALIGGKTGSEVILKFLSDVEDYLLPGG 149
P DD+ + E LAL GG G++ + L PGG
Sbjct: 283 PSDDIPGLQAEVGRHEPKLALDGGIDGTDSLFHLCHGASRMLQPGG 328
>pir||E81010 hemK protein NMB2065 [imported] - Neisseria meningitidis (group B
strain MD58) >gi|7227327|gb|AAF42384.1| (AE002556) hemK
protein [Neisseria meningitidis MC58]
Length = 423
Score = 69.5 bits (167), Expect = 3e-11
Identities = 60/181 (33%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 5 YNGLRIEVEESVYEPAEDTFLLAEALLEEVREDDIVLDVGTGSGILALLAA--KKAKFVV 62
+ G R V SV P +T L EA+L + E+ V D+GTGSG +A+ A + FV
Sbjct: 220 FYGRRFTVNPSVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVR 279
Query: 63 GLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRN---LRGKFTLILFNPPYLP-GD---- 114
DI+ A++ A +NA G + V F F GK+ +I+ NPPY+ GD
Sbjct: 280 ASDISPPALETARKNAADLGAR-VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLL 338
Query: 115 --DVKDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYSSLTGLNVREAFEEKGF 172
D++ E +AL G I D L GG +L+ + G VR E GF
Sbjct: 339 QGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGF 398
Query: 173 S 173
S
Sbjct: 399 S 399
>dbj|BAB03843.1| (AP001507) unknown conserved protein [Bacillus halodurans]
Length = 201
Score = 68.3 bits (164), Expect = 6e-11
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 29/153 (18%)
Query: 40 VLDVGTGSGILALLAAKKA--KFVVGLDINEKAIDLAWRNAQLNGIKNVVFVVSDLFRNL 97
VLDVG G G + + A+ + V +D+NE+AIDLA RNA N +KNVV SDLF+ +
Sbjct: 62 VLDVGCGYGPIGISLARDGGERSVHMVDVNERAIDLAKRNATANHVKNVVVYRSDLFQQV 121
Query: 98 RGK-FTLILFNPPYLPGDDVKDEIDLALIGGKTGSEVILKFLSDVEDYLLPGGRILIVYS 156
+ + F I+ NPP + G V+ + D DYLL G + IV
Sbjct: 122 QDRQFAAIVTNPPI-----------------RAGKRVVHQLFEDARDYLLSNGELWIVIQ 164
Query: 157 SLTGL-----NVREAFEEKGFSTRIVKKERFFF 184
G + +EE +V K++ +F
Sbjct: 165 KKQGAPSTLDKLHNLYEE----VEVVTKKKGYF 193
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.143 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71656146
Number of Sequences: 2977
Number of extensions: 3009780
Number of successful extensions: 8515
Number of sequences better than 1.0e-10: 31
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 8441
Number of HSP's gapped (non-prelim): 32
length of query: 197
length of database: 189,106,746
effective HSP length: 55
effective length of query: 142
effective length of database: 156,189,961
effective search space: 22178974462
effective search space used: 22178974462
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)