BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0285 (PAB0285) DE:Hypothetical protein
(287 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75159 hypothetical protein PAB0285 - Pyrococcus abyssi (st... 547 e-155
pir||D71181 hypothetical protein PH1729 - Pyrococcus horikoshii ... 391 e-108
pir||H75055 hypothetical protein PAB1426 - Pyrococcus abyssi (st... 193 2e-48
pir||D71105 hypothetical protein PH0613 - Pyrococcus horikoshii ... 190 2e-47
gi|11499128 conserved hypothetical protein [Archaeoglobus fulgid... 95 1e-18
sp|O26929|Y841_METTH HYPOTHETICAL PROTEIN MTH841 >gi|7482259|pir... 73 3e-12
gi|11497882 conserved hypothetical protein [Archaeoglobus fulgid... 72 9e-12
dbj|BAB05460.1| (AP001513) unknown conserved protein [Bacillus h... 70 3e-11
>pir||E75159 hypothetical protein PAB0285 - Pyrococcus abyssi (strain Orsay)
>gi|5457866|emb|CAB49356.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 287
Score = 547 bits (1394), Expect = e-155
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MSFALGVILALAAAFTWALSSVLSKVSMRRVSPFTLNSLRLFIASAFYIPLIIYLDLFPD 60
MSFALGVILALAAAFTWALSSVLSKVSMRRVSPFTLNSLRLFIASAFYIPLIIYLDLFPD
Sbjct: 1 MSFALGVILALAAAFTWALSSVLSKVSMRRVSPFTLNSLRLFIASAFYIPLIIYLDLFPD 60
Query: 61 KGLFWWIIVILSGIIGFLVADWLFLEGINIIGVSRANLLVTPHPILTMVLAHYFLDRPLN 120
KGLFWWIIVILSGIIGFLVADWLFLEGINIIGVSRANLLVTPHPILTMVLAHYFLDRPLN
Sbjct: 61 KGLFWWIIVILSGIIGFLVADWLFLEGINIIGVSRANLLVTPHPILTMVLAHYFLDRPLN 120
Query: 121 ASIAFGAILIVLAVIILLSEGKDSSDISLRGVGLVIVAELMWTLAVLITDWLVSDESAVL 180
ASIAFGAILIVLAVIILLSEGKDSSDISLRGVGLVIVAELMWTLAVLITDWLVSDESAVL
Sbjct: 121 ASIAFGAILIVLAVIILLSEGKDSSDISLRGVGLVIVAELMWTLAVLITDWLVSDESAVL 180
Query: 181 ITGLRIASGALGTTFLLPRISQEVKKLKMRDLGLIFVITLLGTILGQYFFVKSISIVSSS 240
ITGLRIASGALGTTFLLPRISQEVKKLKMRDLGLIFVITLLGTILGQYFFVKSISIVSSS
Sbjct: 181 ITGLRIASGALGTTFLLPRISQEVKKLKMRDLGLIFVITLLGTILGQYFFVKSISIVSSS 240
Query: 241 VATPVTESTPIMAALMAIIFLKERFTKKLGISLVLATLGILLIGLGC 287
VATPVTESTPIMAALMAIIFLKERFTKKLGISLVLATLGILLIGLGC
Sbjct: 241 VATPVTESTPIMAALMAIIFLKERFTKKLGISLVLATLGILLIGLGC 287
>pir||D71181 hypothetical protein PH1729 - Pyrococcus horikoshii
>gi|3258160|dbj|BAA30843.1| (AP000007) 292aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 292
Score = 391 bits (995), Expect = e-108
Identities = 190/285 (66%), Positives = 243/285 (84%)
Query: 1 MSFALGVILALAAAFTWALSSVLSKVSMRRVSPFTLNSLRLFIASAFYIPLIIYLDLFPD 60
M+FALGVILA +AAFTWAL+SVLSKVSMRRVSP TLN LRL IAS FY+PLIIYL+L P
Sbjct: 6 MNFALGVILAFSAAFTWALTSVLSKVSMRRVSPLTLNFLRLVIASGFYLPLIIYLNLIPS 65
Query: 61 KGLFWWIIVILSGIIGFLVADWLFLEGINIIGVSRANLLVTPHPILTMVLAHYFLDRPLN 120
KG+ WW+IV+ SGIIGF++ DWLFLEG+ ++GVSRAN+L T HPI+TMVLAHY L RPLN
Sbjct: 66 KGIMWWVIVVFSGIIGFMIGDWLFLEGMKLLGVSRANMLTTLHPIITMVLAHYLLGRPLN 125
Query: 121 ASIAFGAILIVLAVIILLSEGKDSSDISLRGVGLVIVAELMWTLAVLITDWLVSDESAVL 180
A + GA LI+LAV++LLSE +S I+ RGV LV+VAEL+WT+A+LITDWLVS+E VL
Sbjct: 126 AYLFLGAGLIILAVLLLLSEKSESGGINARGVLLVVVAELLWTIAILITDWLVSNEPPVL 185
Query: 181 ITGLRIASGALGTTFLLPRISQEVKKLKMRDLGLIFVITLLGTILGQYFFVKSISIVSSS 240
I LRI+SG LG LP++ +E++KL++ D+GL+FVI+LLGTI+GQY F+KSIS+VSS+
Sbjct: 186 IAALRISSGILGGLPFLPKMWREIRKLRLGDMGLVFVISLLGTIVGQYLFIKSISLVSST 245
Query: 241 VATPVTESTPIMAALMAIIFLKERFTKKLGISLVLATLGILLIGL 285
VATPVTESTPIMA+L+A++FL+E+ T KL S++L+ +GIL+IG+
Sbjct: 246 VATPVTESTPIMASLLAVVFLREKITSKLVASMMLSFIGILIIGV 290
>pir||H75055 hypothetical protein PAB1426 - Pyrococcus abyssi (strain Orsay)
>gi|5458854|emb|CAB50341.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 292
Score = 193 bits (486), Expect = 2e-48
Identities = 107/283 (37%), Positives = 171/283 (59%), Gaps = 6/283 (2%)
Query: 5 LGVILALAAAFTWALSSVLSKVSMRRVSPFTLNSLRLFIASAFYIPLIIYL----DLFPD 60
LG++LAL +AF W +SVL KV +R +P + N +RL+++S Y+ +I YL
Sbjct: 10 LGILLALTSAFCWGTASVLIKVGLRGKTPISANLIRLYMSSLAYL-IIFYLGGNYSEISR 68
Query: 61 KGLFWWIIVILSGIIGFLVADWLFLEGINIIGVSRANLLVTPHPILTMVLAHYFLDRPLN 120
+ + I+ S GF++ D+ + + ++GVSR + + +P+ T++ A FL R +
Sbjct: 69 MPIEYHILAFTSAQFGFVIGDYFYFSALKLLGVSRTVPITSTYPLWTILWAFLFLGREVT 128
Query: 121 ASIAFGAILIVLAVIILLSEGKDSSDISLRGVGLVIVAELMWTLAVLITDWLVSDESAVL 180
I GA LIVLA IIL+S+ + +SL+G+ + + W++A+ I DWL D S++
Sbjct: 129 IRIISGATLIVLA-IILVSKVETEEHVSLKGMVYAFITPISWSIAITIMDWLSKDVSSLT 187
Query: 181 ITGLRIASGALGTTFLLPRISQEVKKLKMRDLGLIFVITLLGTILGQYFFVKSISIVSSS 240
+ GLRI A+G + + RI EVK ++++ +I LG +LGQY FVKS+SI+ S
Sbjct: 188 LAGLRIIYAAIGVSLVSWRIIGEVKSATLKEVAIISSAGFLGLVLGQYAFVKSVSILGSQ 247
Query: 241 VATPVTESTPIMAALMAIIFLKERFTKKLGISLVLATLGILLI 283
+ATP+T PI++ +AI+FLKE K+ +SLV+ LGI LI
Sbjct: 248 IATPITAVNPIISTSLAILFLKEPPNWKIFLSLVMVVLGIWLI 290
>pir||D71105 hypothetical protein PH0613 - Pyrococcus horikoshii
>gi|3257019|dbj|BAA29702.1| (AP000003) 285aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 285
Score = 190 bits (478), Expect = 2e-47
Identities = 100/282 (35%), Positives = 171/282 (60%), Gaps = 4/282 (1%)
Query: 5 LGVILALAAAFTWALSSVLSKVSMRRVSPFTLNSLRLFIASAFYIPLIIYLDLFPDKG-- 62
LGV+LAL +AF W SSVL KV +R SP + N +RL+ +S Y + + + +
Sbjct: 3 LGVLLALTSAFCWGTSSVLIKVGLRGKSPVSANLIRLYFSSILYFLIFYFGGNYKEIAGL 62
Query: 63 -LFWWIIVILSGIIGFLVADWLFLEGINIIGVSRANLLVTPHPILTMVLAHYFLDRPLNA 121
L + I+ +S GF++ D+ + + ++GVSR + + +P+ T++ A+ FL R +
Sbjct: 63 PLEYHILAFISAQFGFVIGDYFYFSALKLLGVSRTVPITSTYPLWTIIWAYLFLGRSVTL 122
Query: 122 SIAFGAILIVLAVIILLSEGKDSSDISLRGVGLVIVAELMWTLAVLITDWLVSDESAVLI 181
I GA+LIV+A II++ + +S +G+ ++ ++W++A++I DWL + S++ +
Sbjct: 123 RIITGAVLIVIA-IIMVGRVESQEHLSYKGILFALITPILWSIAIVIMDWLSNFISSLTL 181
Query: 182 TGLRIASGALGTTFLLPRISQEVKKLKMRDLGLIFVITLLGTILGQYFFVKSISIVSSSV 241
GLRI A+G TF+ + E++ + ++ +I LLG ++GQY FVKS+S++ S +
Sbjct: 182 AGLRIIYAAVGVTFISGKFIGEIRNSNLVEVLIISTAGLLGLVVGQYSFVKSVSLLGSQI 241
Query: 242 ATPVTESTPIMAALMAIIFLKERFTKKLGISLVLATLGILLI 283
ATP+T PI++ +AIIFL E K+ +SL+L LGI LI
Sbjct: 242 ATPITAINPIISTGLAIIFLGESPNWKIIVSLILVVLGIWLI 283
>gi|11499128 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136691|sp|O28739|YF33_ARCFU HYPOTHETICAL PROTEIN
AF1533 >gi|7483136|pir||D69441 conserved hypothetical
protein AF1533 - Archaeoglobus fulgidus
>gi|2649032|gb|AAB89716.1| (AE000997) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 278
Score = 94.8 bits (232), Expect = 1e-18
Identities = 71/283 (25%), Positives = 137/283 (48%), Gaps = 16/283 (5%)
Query: 5 LGVILALAAAFTWALSSVLSKVSMRRVSPFTLNSLRLFIASAFYIPLIIYLDLFPDK--G 62
L ++++L AA WA + + + ++ VS FT N R A+ +++PL L FP
Sbjct: 2 LEILMSLTAAICWAFNGIAYRKGVKDVSAFTANFHRTLFATVYFLPLA--LRDFPGVVID 59
Query: 63 LFWWIIVILSGIIGFLVADWLFLEGINIIGVSRANLLVTPHPILTMVLAHYFLDRPLNAS 122
L +++++S ++ F + D + + VS A + +P+ ++L+ L+ +
Sbjct: 60 LQTALVLVISAMLSFYIGDLSYFASLKRSPVSIALPASSTYPVYVVLLSTVIYGAELSLN 119
Query: 123 IAFGAILIVLAVIILLSEGKDSSDISLRGVGLVIVAELMWTLAVLITDWLVSDESAVLIT 182
AIL+ +AV I+ G+ G+ ++A W LA+L D+L ++
Sbjct: 120 ALISAILVFVAVYIIYGSGEKGET---SGLFYALLAAFSWALAILTLDFLTDRLPVSIVA 176
Query: 183 GLRIASGALGTTFLLPR--ISQEVKKLKMRDLGLIFVITLLGTILGQYFFVKSISIVSSS 240
+R+ + +F + +S E++ L R + IF++ LG F+ +I + SS
Sbjct: 177 FVRLLLCLILLSFTAKKDELSTEIR-LFFRSVRGIFLL------LGIMLFITAIKVSSSW 229
Query: 241 VATPVTESTPIMAALMAIIFLKERFTKKLGISLVLATLGILLI 283
+ ++P+ AA+ IFLKER + +L + + L ILL+
Sbjct: 230 NVVQPSSTSPVFAAIFGAIFLKERISFRLVAGIFVIILAILLL 272
>sp|O26929|Y841_METTH HYPOTHETICAL PROTEIN MTH841 >gi|7482259|pir||C69212 conserved
hypothetical protein MTH841 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621932|gb|AAB85339.1| (AE000861) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 343
Score = 73.4 bits (177), Expect = 3e-12
Identities = 67/297 (22%), Positives = 137/297 (45%), Gaps = 23/297 (7%)
Query: 6 GVILALAAAFTWALSSVLSKVSMRRVSPFTLNSLRLFIASAFYI-----PLIIY-LDLFP 59
G I + A + +S+ L K+ + + P T+ + IA F PL + L+
Sbjct: 46 GYISIITATIFFGISATLDKIMLSSMHPVTIGAYTYIIAGIFLFFIRETPLREHVLNAIN 105
Query: 60 DKGLFW-------WIIVILSGIIGFLVADWLFLEGINIIGVSRANLLVTPHPILTMVLAH 112
KG ++I++L+ ++ ++A LFL G+ A+L++ + ++L +
Sbjct: 106 RKGESEARIKRNDYLILLLTALLSTVIAPLLFLTGLGDTTAVNASLILNVEVLFIILLGY 165
Query: 113 YFLDRPLNASIAFGAILIVLAVIILLSEGKDSS---DISLRGVGLVIVAELMWTLAVLIT 169
L G +LI+L + LL+EG S+ ++++ G LV+ A W+L +++
Sbjct: 166 LIFRETLQLKDFLGIVLIILGAVYLLTEGDFSTILRNVAVTGNFLVMAAAFFWSLDTVLS 225
Query: 170 DWLVSDESAVLITGLRIASG--ALGTTFLLPRISQEVKKLKMRDLGL-IFVITLLGTILG 226
+L + I+G++ + G L L+ I+ E+ L+M L + V ++ + +
Sbjct: 226 KFLSRKRDLIFISGVKSSVGGFVLLIIMLILGINTEL-PLEMLPYALGVSVFSIGCSFIL 284
Query: 227 QYFFVKSISIVSSSVATPVTESTPIMAALMAIIFLKERFTKKLGISLVLATLGILLI 283
Y ++ I P++ + A+ A I L+E F+ GIS ++ G+ ++
Sbjct: 285 IYIAIREIGASMVGALFPLSS---LFGAIFAFIILREPFSIMQGISGIVMLTGVFIL 338
>gi|11497882 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6136504|sp|O29973|Y266_ARCFU HYPOTHETICAL PROTEIN
AF0266 >gi|7482983|pir||B69283 conserved hypothetical
protein AF0266 - Archaeoglobus fulgidus
>gi|2650369|gb|AAB90963.1| (AE001087) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 276
Score = 71.8 bits (173), Expect = 9e-12
Identities = 74/285 (25%), Positives = 127/285 (43%), Gaps = 25/285 (8%)
Query: 7 VILALAAAFTWALSSVLSKVSMRRVSPFTLNSLRLFIASAFYIPLIIYLDLFPDKGLFWW 66
++LAL F W L+ K S+R +SP + SLR IA+ + +II K + W
Sbjct: 5 IVLALTVTF-WGLAFTAIKYSVRFLSPIAIASLRFAIANTLFAVIIIL-----GKRIKWK 58
Query: 67 II--VILSGIIGFLVADWLFLEGINIIGVSRANLLVTPHPILTMVLAHYFLDRPLNASIA 124
+ V GI G V G I A+++++ PI ++L+ FL + S
Sbjct: 59 DLPKVFALGIFGVSVYHVFLNLGEVYISSGVASVVISLAPIFVLILSAIFLRERITYSKV 118
Query: 125 FGAILIVLAVIILLSEGKDSSDISLRGVGLVIVAELMWTLAVLITDWLVSDESAVLITGL 184
G I+ L V+++ + S ++ G+ LV+V+ + + L+S + + +T
Sbjct: 119 VGIIIAFLGVVVI----SEPSYANIYGIALVMVSTVAAAIYTTFGKSLLSKYNPITLTSN 174
Query: 185 RIASGALGTTFLLPRISQEVKKLKMRDLGLIFVITLLGTI------LGQYFFVKSISIVS 238
+ LG+ L P + ++ L DL LI I LG LG Y+F++
Sbjct: 175 AM---VLGSIPLYPFLPDSIRSLG-GDLNLIGSIVFLGIFSTFFGYLGWYYFLEK---EE 227
Query: 239 SSVATPVTESTPIMAALMAIIFLKERFTKKLGISLVLATLGILLI 283
+S A+ + P+++ L I L E T + L LGI ++
Sbjct: 228 ASRASVFLLAIPVVSLLAGNILLAEPLTLRTVAGSGLVLLGIYIV 272
>dbj|BAB05460.1| (AP001513) unknown conserved protein [Bacillus halodurans]
Length = 306
Score = 70.2 bits (169), Expect = 3e-11
Identities = 63/271 (23%), Positives = 114/271 (41%), Gaps = 6/271 (2%)
Query: 17 WALSSVLSKVSMRRVSPFTLNSLRLFIASAFYIPLIIYLDLFPDKGLFWWIIVILSGIIG 76
W L+ V+ K+ + P T+ +LR+F+A + +++ L F W VIL+ I G
Sbjct: 17 WGLNVVMLKLLVTSFPPVTMTALRIFVAGFVVLLVLLLLKTFRQLTATEWKYVILAAIFG 76
Query: 77 FLVADWLFLEGINIIGVSRANLLVTPHPILTMVLAHYFLDRPLNASIAFGAILIVLAVII 136
L + G+ + S A L++ P+ T +LA L L FG L ++ V
Sbjct: 77 VLGHHFFLSIGLTMTSASNAVLILALLPLTTSLLAILLLGDMLTRWRGFGIFLGLIGVCT 136
Query: 137 LLSEGKDSSDISLRGVGLVIVAELMWTLAVLITDWLVSDESAVLITGLRIASGALGTTFL 196
++ G+ G G++ +A ++ L+ + A +TG+ + G+L F+
Sbjct: 137 IVLFGEGGLAGIRTGDGVIFLAMMIQALSFVYIKKATDTLDAKQVTGMMLLIGSL-LLFV 195
Query: 197 LPRISQEVKKLKMRDLGL----IFVIT-LLGTILGQYFFVKSISIVSSSVATPVTESTPI 251
I + M D L +FVI+ + T LG + ++I + + P
Sbjct: 196 TSFIIEPNGLASMGDKALWIWWVFVISAVFATGLGHIIYNQAIHQLGTGETAIFNNLVPF 255
Query: 252 MAALMAIIFLKERFTKKLGISLVLATLGILL 282
L + +FL E L+ G++L
Sbjct: 256 FGLLFSALFLGEAIALAQIAGLLFIVAGVIL 286
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.145 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89959196
Number of Sequences: 2977
Number of extensions: 3443399
Number of successful extensions: 12951
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12921
Number of HSP's gapped (non-prelim): 13
length of query: 287
length of database: 189,106,746
effective HSP length: 53
effective length of query: 234
effective length of database: 157,386,935
effective search space: 36828542790
effective search space used: 36828542790
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 165 (68.7 bits)