BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0290 (rimK) DE:RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN.
(273 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75160 ribosomal protein s6 modification protein. PAB0290 -... 554 e-157
pir||D71180 probable ribosomal protein S6 modification protein -... 462 e-129
pir||T43945 ribosomal protein S6 modification protein [imported]... 209 3e-53
pir||C75304 ribosomal protein S6 modification protein - Deinococ... 187 2e-46
gb|AAK40505.1| Ribosomal protein S6 modification protein (rimK-1... 179 4e-44
pir||G72625 probable ribosomal protein S6, modification protein ... 162 4e-39
emb|CAB57657.1| (Y18930) ribosomal protein S6 modification prote... 148 5e-35
gb|AAK40950.1| Ribosomal protein S6 modification protein (rimK-2... 148 5e-35
sp|Q58037|Y620_METJA HYPOTHETICAL PROTEIN MJ0620 >gi|2129271|pir... 100 3e-20
gb|AAK42497.1| Ribosomal protein S6 modification protein (rimK-3... 79 5e-14
sp|P45241|RIMK_HAEIN PROBABLE RIBOSOMAL PROTEIN S6 MODIFICATION ... 70 3e-11
>pir||C75160 ribosomal protein s6 modification protein. PAB0290 - Pyrococcus
abyssi (strain Orsay) >gi|5457872|emb|CAB49362.1|
(AJ248284) RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN.
[Pyrococcus abyssi]
Length = 273
Score = 554 bits (1412), Expect = e-157
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MRIGITYSVLRREEIMIKERAKEFGEVVMLHEDELIFPGEYDVDVVIIRNLSHFKSLYIA 60
MRIGITYSVLRREEIMIKERAKEFGEVVMLHEDELIFPGEYDVDVVIIRNLSHFKSLYIA
Sbjct: 1 MRIGITYSVLRREEIMIKERAKEFGEVVMLHEDELIFPGEYDVDVVIIRNLSHFKSLYIA 60
Query: 61 KLFENHGIPTINPFNVILEAGDKVFATLKLAKKVPVPRWGVALSENSASKLAKDMEFPVV 120
KLFENHGIPTINPFNVILEAGDKVFATLKLAKKVPVPRWGVALSENSASKLAKDMEFPVV
Sbjct: 61 KLFENHGIPTINPFNVILEAGDKVFATLKLAKKVPVPRWGVALSENSASKLAKDMEFPVV 120
Query: 121 SKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQEYIEKPGRDIRSYVIGGE 180
SKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQEYIEKPGRDIRSYVIGGE
Sbjct: 121 SKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQEYIEKPGRDIRSYVIGGE 180
Query: 181 FVTAIYRYSDHWVTNTARGGRAEPCFDERVIDVSIKAWEAFGEGALAIDIFETKNELLVN 240
FVTAIYRYSDHWVTNTARGGRAEPCFDERVIDVSIKAWEAFGEGALAIDIFETKNELLVN
Sbjct: 181 FVTAIYRYSDHWVTNTARGGRAEPCFDERVIDVSIKAWEAFGEGALAIDIFETKNELLVN 240
Query: 241 EVNPNMEFKNAARVTGVDIARKLVEYAVEVAKR 273
EVNPNMEFKNAARVTGVDIARKLVEYAVEVAKR
Sbjct: 241 EVNPNMEFKNAARVTGVDIARKLVEYAVEVAKR 273
>pir||D71180 probable ribosomal protein S6 modification protein - Pyrococcus
horikoshii >gi|3258152|dbj|BAA30835.1| (AP000007) 273aa
long hypothetical ribosomal protein S6 modification
protein [Pyrococcus horikoshii]
Length = 273
Score = 462 bits (1175), Expect = e-129
Identities = 211/273 (77%), Positives = 253/273 (92%)
Query: 1 MRIGITYSVLRREEIMIKERAKEFGEVVMLHEDELIFPGEYDVDVVIIRNLSHFKSLYIA 60
M+IGITY++LR+EE+MI+E A+ FGE VMLHED + FP +YD+DVVIIRN+S+FK+LY+A
Sbjct: 1 MKIGITYTILRKEELMIRENAERFGETVMLHEDNVRFPYKYDLDVVIIRNVSYFKALYLA 60
Query: 61 KLFENHGIPTINPFNVILEAGDKVFATLKLAKKVPVPRWGVALSENSASKLAKDMEFPVV 120
KLFE HG+PT+NPF+++LEAGDKVF+TLKL+KKVPVPRWGV+ SENSA K+A+++ +P+V
Sbjct: 61 KLFEEHGVPTVNPFSIMLEAGDKVFSTLKLSKKVPVPRWGVSFSENSAKKIAEELGYPIV 120
Query: 121 SKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQEYIEKPGRDIRSYVIGGE 180
SKPVFGSWGRLLAKIND+D+LE +LEH+KWMKNPLYNIHY QE+I+KPGRDIRSYVIGGE
Sbjct: 121 SKPVFGSWGRLLAKINDKDSLEGLLEHKKWMKNPLYNIHYFQEFIQKPGRDIRSYVIGGE 180
Query: 181 FVTAIYRYSDHWVTNTARGGRAEPCFDERVIDVSIKAWEAFGEGALAIDIFETKNELLVN 240
F+TAIYRYSDHW+TNTARGGRAEPC + V ++SIKAWEAFG+GALAIDIFE+ N LLVN
Sbjct: 181 FITAIYRYSDHWITNTARGGRAEPCDNSEVEEISIKAWEAFGDGALAIDIFESPNGLLVN 240
Query: 241 EVNPNMEFKNAARVTGVDIARKLVEYAVEVAKR 273
EVNPNMEFKNA RVTGV+IA KLVEYAVEVAKR
Sbjct: 241 EVNPNMEFKNATRVTGVNIAEKLVEYAVEVAKR 273
>pir||T43945 ribosomal protein S6 modification protein [imported] - Thermus
thermophilus >gi|2696105|dbj|BAA23876.1| (AB006681)
ribosomal protein S6 modification protein [Thermus
thermophilus] >gi|4239971|dbj|BAA74766.1| (AB017109)
RimK [Thermus thermophilus]
Length = 281
Score = 209 bits (527), Expect = 3e-53
Identities = 121/282 (42%), Positives = 168/282 (58%), Gaps = 15/282 (5%)
Query: 3 IGITYSVLRREEIMIKERAKEFGEV----------VMLHEDELIFPGEYDVDVVIIRNLS 52
+ I Y +R +E M+ ERA+ G ++L E G V V + R +S
Sbjct: 2 LAILYDRIRPDERMLFERAEALGLPYKKVYVPALPMVLGERPEALEG---VTVALERCVS 58
Query: 53 HFKSLYIAKLFENHGIPTINPFNVILEAGDKVFATLKLAKK-VPVPRWGVALSENSASKL 111
+ L A+ GIP +N VI GDK ++ LAK +P P+ +A A +L
Sbjct: 59 QSRGLAAARYLTALGIPVVNRPEVIEACGDKWATSVALAKAGLPQPKTALATDREEALRL 118
Query: 112 AKDMEFPVVSKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQEYIEKPGRD 171
+ +PVV KPV GSWGRLLAK+ D A EA+LEH++ + + + Y+QEY+EKPGRD
Sbjct: 119 MEAFGYPVVLKPVIGSWGRLLAKVTDRAAAEALLEHKEVLGGFQHQLFYIQEYVEKPGRD 178
Query: 172 IRSYVIGGEFVTAIYRYSDHWVTNTARGGRAEPC-FDERVIDVSIKAWEAFGEGALAIDI 230
IR +V+G + AIYR S HW+TNTARGG+AE C E + +S+ A EA G G +A+D+
Sbjct: 179 IRVFVVGERAIAAIYRRSAHWITNTARGGQAENCPLTEEIARLSVGAAEAVGGGVVAVDL 238
Query: 231 FETKNELLVNEVNPNMEFKNAARVTGVDIARKLVEYAVEVAK 272
FE++ LLVNEVN MEFKN+ TGVDI +++ YA EVA+
Sbjct: 239 FESERGLLVNEVNHTMEFKNSVHTTGVDIPGEILRYAWEVAR 280
>pir||C75304 ribosomal protein S6 modification protein - Deinococcus radiodurans
(strain R1) >gi|6459994|gb|AAF11741.1|AE002052_4
(AE002052) ribosomal protein S6 modification protein
[Deinococcus radiodurans]
Length = 295
Score = 187 bits (469), Expect = 2e-46
Identities = 99/234 (42%), Positives = 145/234 (61%), Gaps = 8/234 (3%)
Query: 45 VVIIRNLSHFKSLYIAKLFENHGIPTINPFNVILEAGDKVFATLKLAKK-VPVPRWGVAL 103
V I R +S + + + E G+ INP +VI GDK+ +LA +P PR GVA
Sbjct: 60 VAIERCVSQSRGHAVTRALEGFGVKVINPSHVIELCGDKLATNARLAAAGLPTPRTGVAF 119
Query: 104 SENSASKLAKDMEFPVVSKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQE 163
SA L ++M +PVV KP GSWGR+++++ND DA EAV+EH++ + P + + Y+QE
Sbjct: 120 DGESALGLIEEMGYPVVLKPTVGSWGRMVSRLNDRDAAEAVIEHKEVLGGPQHGVFYVQE 179
Query: 164 YIEKPGRDIRSYVIGGEFVTAIYRYSDHWVTNTARGGRAEPC-FDERVIDVSIKAWEAFG 222
I KPGRDIR++V+GG+ + AIYR S+HW+TNTARG +A C + D++ +A A
Sbjct: 180 LINKPGRDIRAFVVGGQGIGAIYRTSEHWITNTARGAKASNCEVTPAIADLAQRAAAAVD 239
Query: 223 EGALAIDIFETK------NELLVNEVNPNMEFKNAARVTGVDIARKLVEYAVEV 270
+AID+ E + L++ E+N MEFKN+ TGV+I R + EYAV +
Sbjct: 240 GQIVAIDLVEDPARQNDWDGLVIIEINHTMEFKNSVSTTGVNIPRLMGEYAVSL 293
>gb|AAK40505.1| Ribosomal protein S6 modification protein (rimK-1) [Sulfolobus
solfataricus]
Length = 286
Score = 179 bits (449), Expect = 4e-44
Identities = 105/283 (37%), Positives = 169/283 (59%), Gaps = 10/283 (3%)
Query: 1 MRIGITYSVLRREEIMIKERAKEFGEVV--MLHEDELIFPGEY----DVDVVIIRNLSHF 54
++IGI Y + R EE + E K+ G V + +D ++F ++ D D+ I RN+SH
Sbjct: 4 VKIGILYDMPRWEEKNLIEEGKKLGYQVATIYSKDFVLFSNDFTIDNDTDLFIQRNVSHN 63
Query: 55 KSLYIAKLFENHGIPTINPFNVILEAGDKVFATLKLAK-KVPVPRWGVALSENSASKLAK 113
++L + L E G P IN ++ +K+F T LA+ +P P+ +A + +A + +K
Sbjct: 64 RALITSFLVEQVGYPVINDHTTLIRCENKIFTTYILARHNIPTPKTFIAFDKTNAIEYSK 123
Query: 114 DMEFPVVSKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQEYIEKPGRDIR 173
+ +PVV KPV GSWGR++AK ++ D L + LE++++ +I+Y+QE++ KP RDIR
Sbjct: 124 KLGYPVVIKPVEGSWGRMVAKADNLDVLYSYLEYQEFSTQKYKDIYYIQEFVNKPNRDIR 183
Query: 174 SYVIGGEFVTAIYRYSD-HWVTNTARGGRAEPC-FDERVIDVSIKAWEAFGEGALAIDIF 231
+VIG E IYR ++ +W TNTA G +A P DE + ++++K + G L IDIF
Sbjct: 184 IFVIGDETPVGIYRVNENNWRTNTALGAKAYPLKIDEELRELALKVKDIIGGFFLGIDIF 243
Query: 232 ETKNE-LLVNEVNPNMEFKNAARVTGVDIARKLVEYAVEVAKR 273
E K+ LV+EVN E+KN RV ++++ L+E A E K+
Sbjct: 244 EDKDRGYLVDEVNGVPEYKNTVRVNNFNVSKFLLEKAAEWVKK 286
>pir||G72625 probable ribosomal protein S6, modification protein APE1463 -
Aeropyrum pernix (strain K1) >gi|5105147|dbj|BAA80461.1|
(AP000061) 286aa long hypothetical ribosomal protein S6,
modification protein [Aeropyrum pernix]
Length = 286
Score = 162 bits (406), Expect = 4e-39
Identities = 99/277 (35%), Positives = 155/277 (55%), Gaps = 11/277 (3%)
Query: 7 YSVLRREEIMIKERAKEFGEVVMLHEDELIFP-GE-----YDVDVVIIRNLSHFKSLYIA 60
Y + R +E M+ E ++ V ++H P GE + D+ + R +S + LY A
Sbjct: 11 YDIARLDEKMLLEELRKRARVRVIHTAARALPLGEPPREAEEADLAVARGVSGRRLLYSA 70
Query: 61 KLFENHGIPTINPFNVILEAGDKVFATLKLAKK-VPVPRWGVALSENSASKLAKDMEFPV 119
E+ G+ T+N + I+ + DKV++ + L+++ VP PR L + A+ + FP
Sbjct: 71 LAAESWGLETVNSSHAIMASQDKVWSHMLLSRRGVPTPRSYTILDPQAVPYAAEAIGFPA 130
Query: 120 VSKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQEYIEKPGRDIRSYVIGG 179
V KP GSWG+L++ + D+ + E ++++ L + +QEY++KPGRDIRS+ IG
Sbjct: 131 VFKPARGSWGKLVSLLRDKSEASLLSEALEYVQGDL-KLGLVQEYVDKPGRDIRSFCIGD 189
Query: 180 EFVTAIYRYSDHWVTNTARGGRAEPC-FDERVIDVSIKAWEAFGEGALAIDIFETKNE-- 236
AIYRY + TN A GGRA P V D++++A EA G +DI E+ +
Sbjct: 190 TVPAAIYRYGSGFATNLAAGGRAAPAPVTGDVEDLTLRACEALGVEVGGVDIVESTRDGG 249
Query: 237 LLVNEVNPNMEFKNAARVTGVDIARKLVEYAVEVAKR 273
LLV EVNP+ EFKN RVTGV++A + +Y V +R
Sbjct: 250 LLVLEVNPSTEFKNTVRVTGVNVAALIADYVVSRVRR 286
>emb|CAB57657.1| (Y18930) ribosomal protein S6 modification protein [Sulfolobus
solfataricus]
Length = 282
Score = 148 bits (371), Expect = 5e-35
Identities = 92/279 (32%), Positives = 157/279 (55%), Gaps = 11/279 (3%)
Query: 1 MRIGITYSVLRREEIMI----KERAKEFGEVVMLHEDELIFPGEYD-VDVVIIRNLSHFK 55
M+I + ++R+EE +I ER ++ +V+ + ++ + F DV IIR +S ++
Sbjct: 1 MKIALVVDIIRQEEKLIIKALNERQIDY-DVINVGQEPIPFNKALSKYDVGIIRPVSMYR 59
Query: 56 SLYIAKLFENHGIPTINPFNVILEAGDKVFATLKLAKK-VPVPRWGVALSENSASKLAKD 114
+LY + + E G+ TIN + I GDK+ KL K +P+P +A S ++A K +
Sbjct: 60 ALYSSAILEAAGVHTINSTDAIGTCGDKILTYSKLFKHGIPIPDSIIAASPDAAMKAYEQ 119
Query: 115 MEFPVVSKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQEYIEKPGRDIRS 174
M FP++ KP GSWGR+++ I D + ++EHR+ + N +H +QEYI+ RDIR
Sbjct: 120 MGFPLIDKPPIGSWGRMVSLIRDVYEGKTIIEHREMLNNSALKVHIIQEYIKYKERDIRC 179
Query: 175 YVIGGEFVTAIYRY--SDHWVTNTARGGRAEPC-FDERVIDVSIKAWEAFGEGALAIDIF 231
VIG E + R + W N A GG P D+ + ++++K+ + ++IDI
Sbjct: 180 IVIGDELLGCYARNIPPNEWRANVALGGNPTPIQLDDNIRELAVKSVKLVKGEFVSIDIL 239
Query: 232 ETKNE-LLVNEVNPNMEFKNAARVTGVDIARKLVEYAVE 269
E K++ ++NE+N EFK TG+++A KLV++ V+
Sbjct: 240 EHKSKGYVINELNDVPEFKGFMLATGINVAEKLVDHIVK 278
>gb|AAK40950.1| Ribosomal protein S6 modification protein (rimK-2) [Sulfolobus
solfataricus]
Length = 282
Score = 148 bits (371), Expect = 5e-35
Identities = 92/279 (32%), Positives = 157/279 (55%), Gaps = 11/279 (3%)
Query: 1 MRIGITYSVLRREEIMI----KERAKEFGEVVMLHEDELIFPGEYD-VDVVIIRNLSHFK 55
M+I + ++R+EE +I ER ++ +V+ + ++ + F DV IIR +S ++
Sbjct: 1 MKIALVVDIIRQEEKLIIKALNERQIDY-DVINVGQEPIPFNKALSKYDVGIIRPVSMYR 59
Query: 56 SLYIAKLFENHGIPTINPFNVILEAGDKVFATLKLAKK-VPVPRWGVALSENSASKLAKD 114
+LY + + E G+ TIN + I GDK+ KL K +P+P +A S ++A K +
Sbjct: 60 ALYSSAILEAAGVHTINSTDAIGTCGDKILTYSKLFKHGIPIPDSIIAASPDAAMKAYEQ 119
Query: 115 MEFPVVSKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQEYIEKPGRDIRS 174
M FP++ KP GSWGR+++ I D + ++EHR+ + N +H +QEYI+ RDIR
Sbjct: 120 MGFPLIDKPPIGSWGRMVSLIRDVYEGKTIIEHREMLNNSALKVHIIQEYIKYKERDIRC 179
Query: 175 YVIGGEFVTAIYRY--SDHWVTNTARGGRAEPC-FDERVIDVSIKAWEAFGEGALAIDIF 231
VIG E + R + W N A GG P D+ + ++++K+ + ++IDI
Sbjct: 180 IVIGDELLGCYARNIPPNEWRANVALGGNPTPIQLDDNIRELAVKSVKLVKGEFVSIDIL 239
Query: 232 ETKNE-LLVNEVNPNMEFKNAARVTGVDIARKLVEYAVE 269
E K++ ++NE+N EFK TG+++A KLV++ V+
Sbjct: 240 EHKSKGYVINELNDVPEFKGFMLATGINVAEKLVDHIVK 278
>sp|Q58037|Y620_METJA HYPOTHETICAL PROTEIN MJ0620 >gi|2129271|pir||D64377 ribosomal
protein S6 modification protein - Methanococcus
jannaschii >gi|1591331|gb|AAB98615.1| (U67510) ribosomal
protein S6 modification protein 1 (rimK) [Methanococcus
jannaschii]
Length = 291
Score = 99.8 bits (245), Expect = 3e-20
Identities = 76/239 (31%), Positives = 122/239 (50%), Gaps = 11/239 (4%)
Query: 42 DVDVVIIRNLS--HFKSLYIAKLFENHGIPTINPFNVILEAGDKVFATLKLA-KKVPVPR 98
++D +RNL F + K + NH IP INP + I A +K ++ L +P P+
Sbjct: 55 ELDCCFVRNLGWDSFFRFDVLK-YLNHYIPVINPPDGIDRASNKFLTSVFLELNNLPQPK 113
Query: 99 WGVALSENSASKLAKDMEFPVVSKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNI 158
V S N A E V+ KP+FG G + ++ E + L+ K YN
Sbjct: 114 TVVTESINEAIVWIDKFEEAVL-KPIFGCGGEGIVRVKKELPISTKLKILNEFKEK-YNT 171
Query: 159 HYMQEYIE---KPGRDIRSYVIGGEFVTAIYRYS-DHWVTNTARGGRAEPC-FDERVIDV 213
Y+QE+I+ RDIR++V+ E V A+YR ++W N ++GGR E C E + +
Sbjct: 172 FYIQEFIKPVRNEHRDIRAFVVDDEVVAAMYRIGGENWKNNVSQGGRVEKCEITEEIEKL 231
Query: 214 SIKAWEAFGEGALAIDIFETKNELLVNEVNPNMEFKNAARVTGVDIARKLVEYAVEVAK 272
++KA A G +D+ E+++ L V EVN + ++V+ V+IA KL+E ++ K
Sbjct: 232 ALKAKNALGLFYAGVDLIESEDGLKVLEVNSTPSWIGLSKVSEVNIADKLLEKIIQYVK 290
>gb|AAK42497.1| Ribosomal protein S6 modification protein (rimK-3) [Sulfolobus
solfataricus]
Length = 230
Score = 79.2 bits (192), Expect = 5e-14
Identities = 64/224 (28%), Positives = 108/224 (47%), Gaps = 10/224 (4%)
Query: 55 KSLYIAKLFENHGIPTINPFNVILEAGDKVFATLKLAKK-VPVPRWGVALSENSASKLAK 113
K + + E +G+ +N + +L A DK + +++ + +PVP + +LA+
Sbjct: 12 KRFDVLRELERNGVVLMNRPDSMLLARDKFASLMRMRRAGIPVPNTALVEDPFEVMRLAE 71
Query: 114 DMEFPVVSKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQEYIEKPGRDIR 173
VV KPV GS G K++D D V + + P+Y +Q+Y++KP RDIR
Sbjct: 72 RWG-EVVIKPVVGSLGLGSVKVSDPDIAFRVAKAILSVNQPVY----VQKYVKKPDRDIR 126
Query: 174 SYVIGGEFVTAIYRYS-DHWVTNTARGGRAEPCF-DERVIDVSIKAWEAFGEGALAIDIF 231
VIG + + +IYR S W TN A+G A+ D + ++S+K+ G IDI
Sbjct: 127 VIVIGDKVLGSIYRISKSGWKTNIAQGATAQVLIPDAELEEISLKSVRVLGLDYAGIDII 186
Query: 232 E--TKNELLVNEVNPNMEFKNAARVTGVDIARKLVEYAVEVAKR 273
E + EVN + T ++ A+ +V + +E +R
Sbjct: 187 EDVENGGYKIIEVNAAPLWDGFEAATNINPAKYIVTHLIEKIRR 230
>sp|P45241|RIMK_HAEIN PROBABLE RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN
>gi|1075276|pir||H64127 ribosomal protein S6--glutamic
acid ligase (EC 6.3.2.-) - Haemophilus influenzae
(strain Rd KW20) >gi|1574372|gb|AAC23177.1| (U32828)
ribosomal protein S6 modification protein (rimK)
[Haemophilus influenzae Rd]
Length = 302
Score = 69.9 bits (168), Expect = 3e-11
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 11/210 (5%)
Query: 63 FENHGIPTINPFNVILEAGDKVFATLKLAKK--VPVPRWGVALSENSASKLAKDMEFPVV 120
FE G +N L A DK + +L+L K +PVP ++ E A + P +
Sbjct: 88 FEGKGTFCLNSSQAFLNARDK-WKSLQLLLKAGIPVPNSLLSGGEVQAQATIPHISSPTI 146
Query: 121 SKPVFGSWGRLLAKINDEDALEAVLEHRKWMKNPLYNIHYMQEYIEKPGR-DIRSYVIGG 179
K + GS G + + +++E K + Q++IE+ G DIR +VIG
Sbjct: 147 LKTLNGSQGIGVILAEKPQSAVSIMEAFKQTNISMLQ----QDFIEEAGNADIRCFVIGD 202
Query: 180 EFVTAIYRYSDH--WVTNTARGGRAEPC-FDERVIDVSIKAWEAFGEGALAIDIFETKNE 236
+ V + R + + N RGG+ E + ++I+A +A G +D+ +K
Sbjct: 203 QVVATMQRIGQNGEFRANCHRGGKTEKITLSDEEKQIAIQATKAIGLDVAGVDLIRSKKG 262
Query: 237 LLVNEVNPNMEFKNAARVTGVDIARKLVEY 266
LLV EVN + + + +G+DIA ++++Y
Sbjct: 263 LLVLEVNASPGLEMIEKTSGIDIAAEIIDY 292
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98531409
Number of Sequences: 2977
Number of extensions: 4008151
Number of successful extensions: 8652
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8625
Number of HSP's gapped (non-prelim): 11
length of query: 273
length of database: 189,106,746
effective HSP length: 54
effective length of query: 219
effective length of database: 156,788,448
effective search space: 34336670112
effective search space used: 34336670112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)