BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0294 (argE) DE:acetyl ornithine deacetylase
         (337 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75160 acetyl ornithine deacetylase PAB0294 - Pyrococcus ab...   681  0.0
pir||F71179 hypothetical protein PH1715 - Pyrococcus horikoshii ...   552  e-156
pir||H75398 probable succinyl-diaminopimelate desuccinylase - De...   189  5e-47
pir||C72626 hypothetical protein APE1467 - Aeropyrum pernix (str...   153  3e-36
gb|AAK40507.1| Conserved hypothetical protein [Sulfolobus solfat...   148  9e-35
pir||A75087 acetyl ornithine deacetylase PAB0723 - Pyrococcus ab...    81  2e-14
pir||T41596 probable acetylornithine deacetylase - fission yeast...    70  3e-11

>pir||G75160 acetyl ornithine deacetylase PAB0294 - Pyrococcus abyssi  (strain
           Orsay) >gi|5457876|emb|CAB49366.1| (AJ248284) acetyl
           ornithine deacetylase [Pyrococcus abyssi]
           Length = 337
           
 Score =  681 bits (1738), Expect = 0.0
 Identities = 337/337 (100%), Positives = 337/337 (100%)

Query: 1   MEIPKDEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGP 60
           MEIPKDEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGP
Sbjct: 1   MEIPKDEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGP 60

Query: 61  LILLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVESNANVIFAGLVDEEG 120
           LILLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVESNANVIFAGLVDEEG
Sbjct: 61  LILLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVESNANVIFAGLVDEEG 120

Query: 121 FSKGARALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSIGGGAAEKLIE 180
           FSKGARALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSIGGGAAEKLIE
Sbjct: 121 FSKGARALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSIGGGAAEKLIE 180

Query: 181 RWLSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMIVNLRTPPGYEPPRDWDIIDFVPA 240
           RWLSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMIVNLRTPPGYEPPRDWDIIDFVPA
Sbjct: 181 RWLSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMIVNLRTPPGYEPPRDWDIIDFVPA 240

Query: 241 YEVNRRSPLVRTFVRSIRELGMKPKLKKKSGTADMNILAPRFGVDAVAYGPGDSRLDHTP 300
           YEVNRRSPLVRTFVRSIRELGMKPKLKKKSGTADMNILAPRFGVDAVAYGPGDSRLDHTP
Sbjct: 241 YEVNRRSPLVRTFVRSIRELGMKPKLKKKSGTADMNILAPRFGVDAVAYGPGDSRLDHTP 300

Query: 301 YERISLMEYLQSIDVLKNVLTKLKGKDLDKIYKSSPR 337
           YERISLMEYLQSIDVLKNVLTKLKGKDLDKIYKSSPR
Sbjct: 301 YERISLMEYLQSIDVLKNVLTKLKGKDLDKIYKSSPR 337


>pir||F71179 hypothetical protein PH1715 - Pyrococcus horikoshii
           >gi|3258146|dbj|BAA30829.1| (AP000007) 325aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 325
           
 Score =  552 bits (1407), Expect = e-156
 Identities = 260/323 (80%), Positives = 295/323 (90%)

Query: 3   IPKDEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGPLI 62
           I ++EKIKFLKELVEIYSPTG+EEEAAKFIKEK EEYG++AY+D VGNVI  K GEGPL+
Sbjct: 2   ISEEEKIKFLKELVEIYSPTGREEEAAKFIKEKFEEYGIEAYVDNVGNVIARKSGEGPLV 61

Query: 63  LLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVESNANVIFAGLVDEEGFS 122
           LLAGH+DTVPGYIPVRIEG++LWGRGSVDAKGPL+ L F+ +E NANVIFAGLVDEEGFS
Sbjct: 62  LLAGHIDTVPGYIPVRIEGEVLWGRGSVDAKGPLATLFFSTIEGNANVIFAGLVDEEGFS 121

Query: 123 KGARALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSIGGGAAEKLIERW 182
           KGAR L +PRP+Y+IVGEPSG NGVTIGYKGSLTVRFVERVEK H S+G GAAE+LIE+W
Sbjct: 122 KGARNLKIPRPDYIIVGEPSGTNGVTIGYKGSLTVRFVERVEKVHSSLGVGAAERLIEKW 181

Query: 183 LSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMIVNLRTPPGYEPPRDWDIIDFVPAYE 242
           L IS +F DGFNGL+GRIVRF+AY+R+FEFYGEMI+NLRTPPGY PP +WDIIDFVPAYE
Sbjct: 182 LEISKDFSDGFNGLNGRIVRFLAYDREFEFYGEMIINLRTPPGYVPPLEWDIIDFVPAYE 241

Query: 243 VNRRSPLVRTFVRSIRELGMKPKLKKKSGTADMNILAPRFGVDAVAYGPGDSRLDHTPYE 302
           V+RRSPLVR FV+SIRE G+KPKLKKKSGTAD NIL P+FGVDAVAYGPGDS+LDHTPYE
Sbjct: 242 VDRRSPLVRAFVKSIREAGLKPKLKKKSGTADTNILGPKFGVDAVAYGPGDSKLDHTPYE 301

Query: 303 RISLMEYLQSIDVLKNVLTKLKG 325
           RI+L EYL+SI++LK VL KLKG
Sbjct: 302 RINLREYLKSIEILKAVLRKLKG 324


>pir||H75398 probable succinyl-diaminopimelate desuccinylase - Deinococcus
           radiodurans (strain R1)
           >gi|6459166|gb|AAF10979.1|AE001986_4 (AE001986)
           succinyl-diaminopimelate desuccinylase, putative
           [Deinococcus radiodurans]
           Length = 362
           
 Score =  189 bits (474), Expect = 5e-47
 Identities = 131/351 (37%), Positives = 188/351 (53%), Gaps = 36/351 (10%)

Query: 10  KFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGPL-ILLAGHV 68
           + +++ V I S +G+E+  A F+++ +   G  A +D+ GN +GV+ G GPL + L GH+
Sbjct: 12  ELIRQAVSIPSLSGEEQAIAAFLRDWMARRGFDAQVDEAGNAVGVR-GSGPLTVALLGHM 70

Query: 69  DTVPGYIPVRI-EGDILWGRGSVDAKGPLSALLFAMVE------SNANVIFAGLVDEEG- 120
           DTVPG IPVR+ E  +L GRGSVDAKG L   + A+        S A  +  G  +EE  
Sbjct: 71  DTVPGDIPVRVDEAGVLHGRGSVDAKGSLCTFIAAVSALPPEALSAARFVCIGATEEEAP 130

Query: 121 FSKGAR-ALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFH-GSIGGGAAEKL 178
            SKGAR A+   RP++V++GEPSG  G+T+GYKG L  +     + FH    G  AA+ L
Sbjct: 131 SSKGARYAMRQHRPDFVLIGEPSGWAGLTLGYKGRLVAKVRVEKDNFHTAGDGTSAADDL 190

Query: 179 IERWLSI---SGNFEDGFNGLSGRIVRFVAYERDFEFYGEMI-------VNLRTPPGYEP 228
              W  +   +  F    +G  G   R     +D    G+ +       + LR PP   P
Sbjct: 191 TLGWQRVREWAAGFAPADSGGGGIFDRVQVTLQDLGSSGDGLTQRAWATIGLRLPPALAP 250

Query: 229 PRDWDIIDFVPA----------YEVNRRSP----LVRTFVRSIRELGMKPKLKKKSGTAD 274
            +  + I+   A          +E   R P    L R    +IRE G  P  K K+GT+D
Sbjct: 251 YQAEEAIEQAFAGLGADLTFTGHESAVRHPKDNALTRALRVAIREQGGTPTFKVKTGTSD 310

Query: 275 MNILAPRFGVDAVAYGPGDSRLDHTPYERISLMEYLQSIDVLKNVLTKLKG 325
           MN++A  + V  +AYGPGDS LDHTP ER+ L EY +++ VL + LT+L G
Sbjct: 311 MNVVAELWPVPTLAYGPGDSALDHTPEERLDLAEYDRAVAVLTSALTRLVG 361


>pir||C72626 hypothetical protein APE1467 - Aeropyrum pernix (strain K1)
           >gi|5105151|dbj|BAA80465.1| (AP000061) 358aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 358
           
 Score =  153 bits (383), Expect = 3e-36
 Identities = 114/342 (33%), Positives = 174/342 (50%), Gaps = 37/342 (10%)

Query: 10  KFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEG-PLILLAGHV 68
           K   +L+ +Y+PTG EE     ++    E G+   +D  GN +     +G P++ L GH+
Sbjct: 22  KLALDLLRVYTPTGSEERLYPVLERWASELGLGFSLDSAGNAVLSAGPDGLPVVGLVGHL 81

Query: 69  DTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVESNANVI-----FAGLVDEEGFSK 123
           DTVPG +  R+EG  LWGRG+VDAKGPL+A++  +  +++  +       GLV EEG S 
Sbjct: 82  DTVPGRLEARLEGYTLWGRGAVDAKGPLAAMILGLHLASSEGLSCSSAVLGLVGEEGDSP 141

Query: 124 GARALDVPR---PEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGS-IGGGAAEKLI 179
           GA +L V R   P ++IVGEP+G +GV IGY+GSLT+       + H S    GAA+ L+
Sbjct: 142 GAWSL-VSRGDTPLHIIVGEPTGGDGVAIGYRGSLTIEIECTGHEGHSSNPERGAADMLV 200

Query: 180 ERWLSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMI--VNLR-TPPGYEPPR------ 230
           +   SI              + R  A        G  +  VN+R   PG E  +      
Sbjct: 201 KALASILE------RDSRATVTRLKAGTAANITPGRALATVNMRFNEPGLEALQLASELC 254

Query: 231 --------DWDIIDFVPAYEVNRRSPLVRTFVRSIRELGMKPKLKKKSGTADMNILAPRF 282
                       I  +   + +  +   R  V S+R  G+KP++  K GT+DMN+L+   
Sbjct: 255 SSLHQHRCHCSSISLLHPVKTSLSNATARALVASLRTAGVKPRIVVKRGTSDMNVLS--I 312

Query: 283 GVDAV-AYGPGDSRLDHTPYERISLMEYLQSIDVLKNVLTKL 323
             +++ AYGPGD RL HT +E I + + +++  +    LT L
Sbjct: 313 ATESIAAYGPGDPRLSHTKHENIRVGDIVKAAMIYSRTLTIL 354


>gb|AAK40507.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 346
           
 Score =  148 bits (370), Expect = 9e-35
 Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 39/334 (11%)

Query: 2   EIPKDEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGPL 61
           E+ K +  + L +L+ IY+P+  E  A KF ++  ++  +K  I    N   + EG+   
Sbjct: 6   ELVKQKAKELLLDLLSIYTPSKSEANATKFFEKISKDLNLKLEILPDSNSFILGEGD--- 62

Query: 62  ILLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFA---MVESNANVIFAGLVDE 118
           ILLA HVDTV GYI  +IE ++++GRG+VDAKGPL +++ A   + E    V  +GL DE
Sbjct: 63  ILLASHVDTVYGYIEPKIENELIYGRGAVDAKGPLISMIIATWLLNEKGIKVRVSGLADE 122

Query: 119 EGFSKGARALDVPRP--EYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSIGGG--- 173
           E  S GA+ L       +Y+IVGEPS    + + Y+GS+ +  +      H S       
Sbjct: 123 ESTSIGAKELIAKNYNFKYIIVGEPSNATDIVVEYRGSIQLDIMCEGTPEHSSSAKNNLI 182

Query: 174 --AAEKLIERWLSISGNFE------------DGFNGLSGRI-----VRFVAYERDFEFYG 214
              ++K+IE +     N++            + +N    ++     +R+    +  +   
Sbjct: 183 VDISKKIIEVYKQ-PENYDKPSIVPTIIRAGESYNVTPAKLYLHLDIRYAINNKREDLIK 241

Query: 215 EMIVNLRTPPGYEPPRDWDIIDFVPAYEVNRRSPLVRTFVRSIRELGMKPKLKKKSGTAD 274
           E+           P  +  I+D  P  +V+  +P+V++  R++ +  +KP+L KK+GT+D
Sbjct: 242 EITDKF-------PECNLKIVDETPPVKVSINNPVVKSLARALLKQNIKPRLVKKAGTSD 294

Query: 275 MNILAPRFGVDAVAYGPGDSRLDHTPYERISLME 308
           MNIL  R   +   YGPG+S L+HT  E+ISL E
Sbjct: 295 MNIL-QRITTNIATYGPGNSMLEHTTQEKISLDE 327


>pir||A75087 acetyl ornithine deacetylase PAB0723 - Pyrococcus abyssi  (strain
           Orsay) >gi|5458510|emb|CAB49998.1| (AJ248286) Acetyl
           ornithine deacetylase [Pyrococcus abyssi]
           Length = 354
           
 Score = 81.1 bits (197), Expect = 2e-14
 Identities = 82/344 (23%), Positives = 150/344 (42%), Gaps = 37/344 (10%)

Query: 5   KDEKIK-FLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGPLIL 63
           K E+ K  L +L++I SP+G+E+  A +I E L       +I+  G +I +    G  + 
Sbjct: 5   KTERAKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVHIESDGEIIDLVVNPGAELF 64

Query: 64  LAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAM-----VESNANVIFAGLVDE 118
              H+DT+       + G+I++G G+ D KG ++++L  +      E + NV    + DE
Sbjct: 65  YEVHMDTIEPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFVSDE 124

Query: 119 EGFSKG-ARALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSI---GGGA 174
           E   +G A  ++  RP+  IV EP+ +  V I + G++   F    ++ HG+    G  A
Sbjct: 125 EKGGRGSALFMERYRPKMAIVLEPTDLE-VHIAHAGNIEAYFEVDGKEAHGACPESGVNA 183

Query: 175 AEKLIERW--------LSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMIVNLRTPPGY 226
            E++ E            + G + D   G+   I     Y       G +    R  P  
Sbjct: 184 IEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRL--EARLLPNQ 241

Query: 227 EPPRDWDIIDFV--------------PAYEVNRRSPLVRTFVRSIRELGMKPKLKKKSGT 272
           E     D+ID +                YE++    +V+    ++  +G+      +S T
Sbjct: 242 EVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSWT 301

Query: 273 ADMNILAPRFGVDAVAYGPGDSRLDHTPYERISLMEYLQSIDVL 316
             +N      G   + +GPG+  + HT +ERI + + +++ + L
Sbjct: 302 DAINFTYN--GTKTIVFGPGNLDISHTKHERIDVRDVVKASEFL 343


>pir||T41596 probable acetylornithine deacetylase - fission yeast
           (Schizosaccharomyces pombe) >gi|3702638|emb|CAA21230.1|
           (AL031825) putative acetylornithine deacetylase
           [Schizosaccharomyces pombe]
           Length = 400
           
 Score = 70.2 bits (169), Expect = 3e-11
 Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 21/168 (12%)

Query: 6   DEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEG-------- 57
           D  I   K LVEI S  G E   + F+K  LE  G+   + +V +   V++         
Sbjct: 59  DNLISLHKSLVEIESLGGNEVNVSDFLKSYLESKGLTVELQRVSSNPTVRDNVYAYLGSQ 118

Query: 58  EGPLILLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVE-------SNANV 110
               ++L  H+DTV  ++P  IEGD + GRGS DAK  ++A +FAM+E          ++
Sbjct: 119 RNTKVVLTSHIDTVNPFLPYYIEGDKIHGRGSCDAKSSVAAQIFAMLELMSEGKVQEGDL 178

Query: 111 IFAGLVDEE----GFSKGARALDVPRPEYVIVGEPSGVNGVTIGYKGS 154
               +V EE    G    A  L+    E  I GEP+  N + +G+KG+
Sbjct: 179 SLLFVVGEEIDGIGMKTVANKLNADW-EVAIFGEPT-ENKLGVGHKGN 224


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.142    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136873816
Number of Sequences: 2977
Number of extensions: 6459499
Number of successful extensions: 17117
Number of sequences better than 1.0e-10: 7
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17097
Number of HSP's gapped (non-prelim): 10
length of query: 337
length of database: 189,106,746
effective HSP length: 54
effective length of query: 283
effective length of database: 156,788,448
effective search space: 44371130784
effective search space used: 44371130784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)