BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0294 (argE) DE:acetyl ornithine deacetylase
(337 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75160 acetyl ornithine deacetylase PAB0294 - Pyrococcus ab... 681 0.0
pir||F71179 hypothetical protein PH1715 - Pyrococcus horikoshii ... 552 e-156
pir||H75398 probable succinyl-diaminopimelate desuccinylase - De... 189 5e-47
pir||C72626 hypothetical protein APE1467 - Aeropyrum pernix (str... 153 3e-36
gb|AAK40507.1| Conserved hypothetical protein [Sulfolobus solfat... 148 9e-35
pir||A75087 acetyl ornithine deacetylase PAB0723 - Pyrococcus ab... 81 2e-14
pir||T41596 probable acetylornithine deacetylase - fission yeast... 70 3e-11
>pir||G75160 acetyl ornithine deacetylase PAB0294 - Pyrococcus abyssi (strain
Orsay) >gi|5457876|emb|CAB49366.1| (AJ248284) acetyl
ornithine deacetylase [Pyrococcus abyssi]
Length = 337
Score = 681 bits (1738), Expect = 0.0
Identities = 337/337 (100%), Positives = 337/337 (100%)
Query: 1 MEIPKDEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGP 60
MEIPKDEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGP
Sbjct: 1 MEIPKDEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGP 60
Query: 61 LILLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVESNANVIFAGLVDEEG 120
LILLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVESNANVIFAGLVDEEG
Sbjct: 61 LILLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVESNANVIFAGLVDEEG 120
Query: 121 FSKGARALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSIGGGAAEKLIE 180
FSKGARALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSIGGGAAEKLIE
Sbjct: 121 FSKGARALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSIGGGAAEKLIE 180
Query: 181 RWLSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMIVNLRTPPGYEPPRDWDIIDFVPA 240
RWLSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMIVNLRTPPGYEPPRDWDIIDFVPA
Sbjct: 181 RWLSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMIVNLRTPPGYEPPRDWDIIDFVPA 240
Query: 241 YEVNRRSPLVRTFVRSIRELGMKPKLKKKSGTADMNILAPRFGVDAVAYGPGDSRLDHTP 300
YEVNRRSPLVRTFVRSIRELGMKPKLKKKSGTADMNILAPRFGVDAVAYGPGDSRLDHTP
Sbjct: 241 YEVNRRSPLVRTFVRSIRELGMKPKLKKKSGTADMNILAPRFGVDAVAYGPGDSRLDHTP 300
Query: 301 YERISLMEYLQSIDVLKNVLTKLKGKDLDKIYKSSPR 337
YERISLMEYLQSIDVLKNVLTKLKGKDLDKIYKSSPR
Sbjct: 301 YERISLMEYLQSIDVLKNVLTKLKGKDLDKIYKSSPR 337
>pir||F71179 hypothetical protein PH1715 - Pyrococcus horikoshii
>gi|3258146|dbj|BAA30829.1| (AP000007) 325aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 325
Score = 552 bits (1407), Expect = e-156
Identities = 260/323 (80%), Positives = 295/323 (90%)
Query: 3 IPKDEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGPLI 62
I ++EKIKFLKELVEIYSPTG+EEEAAKFIKEK EEYG++AY+D VGNVI K GEGPL+
Sbjct: 2 ISEEEKIKFLKELVEIYSPTGREEEAAKFIKEKFEEYGIEAYVDNVGNVIARKSGEGPLV 61
Query: 63 LLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVESNANVIFAGLVDEEGFS 122
LLAGH+DTVPGYIPVRIEG++LWGRGSVDAKGPL+ L F+ +E NANVIFAGLVDEEGFS
Sbjct: 62 LLAGHIDTVPGYIPVRIEGEVLWGRGSVDAKGPLATLFFSTIEGNANVIFAGLVDEEGFS 121
Query: 123 KGARALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSIGGGAAEKLIERW 182
KGAR L +PRP+Y+IVGEPSG NGVTIGYKGSLTVRFVERVEK H S+G GAAE+LIE+W
Sbjct: 122 KGARNLKIPRPDYIIVGEPSGTNGVTIGYKGSLTVRFVERVEKVHSSLGVGAAERLIEKW 181
Query: 183 LSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMIVNLRTPPGYEPPRDWDIIDFVPAYE 242
L IS +F DGFNGL+GRIVRF+AY+R+FEFYGEMI+NLRTPPGY PP +WDIIDFVPAYE
Sbjct: 182 LEISKDFSDGFNGLNGRIVRFLAYDREFEFYGEMIINLRTPPGYVPPLEWDIIDFVPAYE 241
Query: 243 VNRRSPLVRTFVRSIRELGMKPKLKKKSGTADMNILAPRFGVDAVAYGPGDSRLDHTPYE 302
V+RRSPLVR FV+SIRE G+KPKLKKKSGTAD NIL P+FGVDAVAYGPGDS+LDHTPYE
Sbjct: 242 VDRRSPLVRAFVKSIREAGLKPKLKKKSGTADTNILGPKFGVDAVAYGPGDSKLDHTPYE 301
Query: 303 RISLMEYLQSIDVLKNVLTKLKG 325
RI+L EYL+SI++LK VL KLKG
Sbjct: 302 RINLREYLKSIEILKAVLRKLKG 324
>pir||H75398 probable succinyl-diaminopimelate desuccinylase - Deinococcus
radiodurans (strain R1)
>gi|6459166|gb|AAF10979.1|AE001986_4 (AE001986)
succinyl-diaminopimelate desuccinylase, putative
[Deinococcus radiodurans]
Length = 362
Score = 189 bits (474), Expect = 5e-47
Identities = 131/351 (37%), Positives = 188/351 (53%), Gaps = 36/351 (10%)
Query: 10 KFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGPL-ILLAGHV 68
+ +++ V I S +G+E+ A F+++ + G A +D+ GN +GV+ G GPL + L GH+
Sbjct: 12 ELIRQAVSIPSLSGEEQAIAAFLRDWMARRGFDAQVDEAGNAVGVR-GSGPLTVALLGHM 70
Query: 69 DTVPGYIPVRI-EGDILWGRGSVDAKGPLSALLFAMVE------SNANVIFAGLVDEEG- 120
DTVPG IPVR+ E +L GRGSVDAKG L + A+ S A + G +EE
Sbjct: 71 DTVPGDIPVRVDEAGVLHGRGSVDAKGSLCTFIAAVSALPPEALSAARFVCIGATEEEAP 130
Query: 121 FSKGAR-ALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFH-GSIGGGAAEKL 178
SKGAR A+ RP++V++GEPSG G+T+GYKG L + + FH G AA+ L
Sbjct: 131 SSKGARYAMRQHRPDFVLIGEPSGWAGLTLGYKGRLVAKVRVEKDNFHTAGDGTSAADDL 190
Query: 179 IERWLSI---SGNFEDGFNGLSGRIVRFVAYERDFEFYGEMI-------VNLRTPPGYEP 228
W + + F +G G R +D G+ + + LR PP P
Sbjct: 191 TLGWQRVREWAAGFAPADSGGGGIFDRVQVTLQDLGSSGDGLTQRAWATIGLRLPPALAP 250
Query: 229 PRDWDIIDFVPA----------YEVNRRSP----LVRTFVRSIRELGMKPKLKKKSGTAD 274
+ + I+ A +E R P L R +IRE G P K K+GT+D
Sbjct: 251 YQAEEAIEQAFAGLGADLTFTGHESAVRHPKDNALTRALRVAIREQGGTPTFKVKTGTSD 310
Query: 275 MNILAPRFGVDAVAYGPGDSRLDHTPYERISLMEYLQSIDVLKNVLTKLKG 325
MN++A + V +AYGPGDS LDHTP ER+ L EY +++ VL + LT+L G
Sbjct: 311 MNVVAELWPVPTLAYGPGDSALDHTPEERLDLAEYDRAVAVLTSALTRLVG 361
>pir||C72626 hypothetical protein APE1467 - Aeropyrum pernix (strain K1)
>gi|5105151|dbj|BAA80465.1| (AP000061) 358aa long
hypothetical protein [Aeropyrum pernix]
Length = 358
Score = 153 bits (383), Expect = 3e-36
Identities = 114/342 (33%), Positives = 174/342 (50%), Gaps = 37/342 (10%)
Query: 10 KFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEG-PLILLAGHV 68
K +L+ +Y+PTG EE ++ E G+ +D GN + +G P++ L GH+
Sbjct: 22 KLALDLLRVYTPTGSEERLYPVLERWASELGLGFSLDSAGNAVLSAGPDGLPVVGLVGHL 81
Query: 69 DTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVESNANVI-----FAGLVDEEGFSK 123
DTVPG + R+EG LWGRG+VDAKGPL+A++ + +++ + GLV EEG S
Sbjct: 82 DTVPGRLEARLEGYTLWGRGAVDAKGPLAAMILGLHLASSEGLSCSSAVLGLVGEEGDSP 141
Query: 124 GARALDVPR---PEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGS-IGGGAAEKLI 179
GA +L V R P ++IVGEP+G +GV IGY+GSLT+ + H S GAA+ L+
Sbjct: 142 GAWSL-VSRGDTPLHIIVGEPTGGDGVAIGYRGSLTIEIECTGHEGHSSNPERGAADMLV 200
Query: 180 ERWLSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMI--VNLR-TPPGYEPPR------ 230
+ SI + R A G + VN+R PG E +
Sbjct: 201 KALASILE------RDSRATVTRLKAGTAANITPGRALATVNMRFNEPGLEALQLASELC 254
Query: 231 --------DWDIIDFVPAYEVNRRSPLVRTFVRSIRELGMKPKLKKKSGTADMNILAPRF 282
I + + + + R V S+R G+KP++ K GT+DMN+L+
Sbjct: 255 SSLHQHRCHCSSISLLHPVKTSLSNATARALVASLRTAGVKPRIVVKRGTSDMNVLS--I 312
Query: 283 GVDAV-AYGPGDSRLDHTPYERISLMEYLQSIDVLKNVLTKL 323
+++ AYGPGD RL HT +E I + + +++ + LT L
Sbjct: 313 ATESIAAYGPGDPRLSHTKHENIRVGDIVKAAMIYSRTLTIL 354
>gb|AAK40507.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 346
Score = 148 bits (370), Expect = 9e-35
Identities = 105/334 (31%), Positives = 173/334 (51%), Gaps = 39/334 (11%)
Query: 2 EIPKDEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGPL 61
E+ K + + L +L+ IY+P+ E A KF ++ ++ +K I N + EG+
Sbjct: 6 ELVKQKAKELLLDLLSIYTPSKSEANATKFFEKISKDLNLKLEILPDSNSFILGEGD--- 62
Query: 62 ILLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFA---MVESNANVIFAGLVDE 118
ILLA HVDTV GYI +IE ++++GRG+VDAKGPL +++ A + E V +GL DE
Sbjct: 63 ILLASHVDTVYGYIEPKIENELIYGRGAVDAKGPLISMIIATWLLNEKGIKVRVSGLADE 122
Query: 119 EGFSKGARALDVPRP--EYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSIGGG--- 173
E S GA+ L +Y+IVGEPS + + Y+GS+ + + H S
Sbjct: 123 ESTSIGAKELIAKNYNFKYIIVGEPSNATDIVVEYRGSIQLDIMCEGTPEHSSSAKNNLI 182
Query: 174 --AAEKLIERWLSISGNFE------------DGFNGLSGRI-----VRFVAYERDFEFYG 214
++K+IE + N++ + +N ++ +R+ + +
Sbjct: 183 VDISKKIIEVYKQ-PENYDKPSIVPTIIRAGESYNVTPAKLYLHLDIRYAINNKREDLIK 241
Query: 215 EMIVNLRTPPGYEPPRDWDIIDFVPAYEVNRRSPLVRTFVRSIRELGMKPKLKKKSGTAD 274
E+ P + I+D P +V+ +P+V++ R++ + +KP+L KK+GT+D
Sbjct: 242 EITDKF-------PECNLKIVDETPPVKVSINNPVVKSLARALLKQNIKPRLVKKAGTSD 294
Query: 275 MNILAPRFGVDAVAYGPGDSRLDHTPYERISLME 308
MNIL R + YGPG+S L+HT E+ISL E
Sbjct: 295 MNIL-QRITTNIATYGPGNSMLEHTTQEKISLDE 327
>pir||A75087 acetyl ornithine deacetylase PAB0723 - Pyrococcus abyssi (strain
Orsay) >gi|5458510|emb|CAB49998.1| (AJ248286) Acetyl
ornithine deacetylase [Pyrococcus abyssi]
Length = 354
Score = 81.1 bits (197), Expect = 2e-14
Identities = 82/344 (23%), Positives = 150/344 (42%), Gaps = 37/344 (10%)
Query: 5 KDEKIK-FLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEGEGPLIL 63
K E+ K L +L++I SP+G+E+ A +I E L +I+ G +I + G +
Sbjct: 5 KTERAKEILLQLLKIPSPSGREDRIALYIMEFLHRLDYDVHIESDGEIIDLVVNPGAELF 64
Query: 64 LAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAM-----VESNANVIFAGLVDE 118
H+DT+ + G+I++G G+ D KG ++++L + E + NV + DE
Sbjct: 65 YEVHMDTIEPRAEPFVRGNIVYGTGASDIKGGIASILLMLEQLKKEEKDLNVGIVFVSDE 124
Query: 119 EGFSKG-ARALDVPRPEYVIVGEPSGVNGVTIGYKGSLTVRFVERVEKFHGSI---GGGA 174
E +G A ++ RP+ IV EP+ + V I + G++ F ++ HG+ G A
Sbjct: 125 EKGGRGSALFMERYRPKMAIVLEPTDLE-VHIAHAGNIEAYFEVDGKEAHGACPESGVNA 183
Query: 175 AEKLIERW--------LSISGNFEDGFNGLSGRIVRFVAYERDFEFYGEMIVNLRTPPGY 226
E++ E + G + D G+ I Y G + R P
Sbjct: 184 IEQVFEMLQKLKELEPFKVKGKYFDPHIGIQELICENPYYLIPALCKGRL--EARLLPNQ 241
Query: 227 EPPRDWDIIDFV--------------PAYEVNRRSPLVRTFVRSIRELGMKPKLKKKSGT 272
E D+ID + YE++ +V+ ++ +G+ +S T
Sbjct: 242 EVEDVLDLIDPILDEYTIKYEYTEIWDGYELSEDEEIVQIAKSAMEVVGLDEFGAMRSWT 301
Query: 273 ADMNILAPRFGVDAVAYGPGDSRLDHTPYERISLMEYLQSIDVL 316
+N G + +GPG+ + HT +ERI + + +++ + L
Sbjct: 302 DAINFTYN--GTKTIVFGPGNLDISHTKHERIDVRDVVKASEFL 343
>pir||T41596 probable acetylornithine deacetylase - fission yeast
(Schizosaccharomyces pombe) >gi|3702638|emb|CAA21230.1|
(AL031825) putative acetylornithine deacetylase
[Schizosaccharomyces pombe]
Length = 400
Score = 70.2 bits (169), Expect = 3e-11
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Query: 6 DEKIKFLKELVEIYSPTGKEEEAAKFIKEKLEEYGVKAYIDKVGNVIGVKEG-------- 57
D I K LVEI S G E + F+K LE G+ + +V + V++
Sbjct: 59 DNLISLHKSLVEIESLGGNEVNVSDFLKSYLESKGLTVELQRVSSNPTVRDNVYAYLGSQ 118
Query: 58 EGPLILLAGHVDTVPGYIPVRIEGDILWGRGSVDAKGPLSALLFAMVE-------SNANV 110
++L H+DTV ++P IEGD + GRGS DAK ++A +FAM+E ++
Sbjct: 119 RNTKVVLTSHIDTVNPFLPYYIEGDKIHGRGSCDAKSSVAAQIFAMLELMSEGKVQEGDL 178
Query: 111 IFAGLVDEE----GFSKGARALDVPRPEYVIVGEPSGVNGVTIGYKGS 154
+V EE G A L+ E I GEP+ N + +G+KG+
Sbjct: 179 SLLFVVGEEIDGIGMKTVANKLNADW-EVAIFGEPT-ENKLGVGHKGN 224
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.142 0.411
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136873816
Number of Sequences: 2977
Number of extensions: 6459499
Number of successful extensions: 17117
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17097
Number of HSP's gapped (non-prelim): 10
length of query: 337
length of database: 189,106,746
effective HSP length: 54
effective length of query: 283
effective length of database: 156,788,448
effective search space: 44371130784
effective search space used: 44371130784
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)