BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0297 (aroG) DE:PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE
(265 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75161 phospho-2-dehydro-3-deoxyheptonate aldolase PAB0297 ... 529 e-149
pir||E72388 hypothetical protein TM0343 - Thermotoga maritima (s... 333 1e-90
pir||E72643 probable phospho-2-dehydro-3-deoxyheptonate aldolase... 321 4e-87
gb|AAK40641.1| Phospho-2-dehydro-3-deoxyheptonate aldolase /chor... 309 2e-83
pir||A75449 phospho-2-dehydro-3-deoxyheptonate aldolase/chorisma... 298 3e-80
sp|P39912|AROG_BACSU AROA(G) PROTEIN [INCLUDES: PHOSPHO-2-DEHYDR... 290 1e-77
emb|CAA64712.1| (X95439) chorismate mutase [Staphylococcus xylosus] 282 3e-75
dbj|BAB06961.1| (AP001518) phospho-2-dehydro-3-deoxyheptonate al... 273 2e-72
emb|CAC11392.1| (AL445063) probable gene for 32.4kD protein (ccm... 266 2e-70
dbj|BAA85151.1| (AB018197) carboxysome formation protein [Synech... 266 2e-70
pir||S74729 carboxysome formation protein ccmA - Synechocystis s... 256 2e-67
pir||H72073 phospho-2-dehydro-3-deoxyheptonate aldolase, probabl... 240 1e-62
pir||H81678 phospho-2-dehydro-3-deoxyheptonate aldolase, probabl... 227 1e-58
pir||B71522 probable deoxyheptonate aldolase - Chlamydia trachom... 226 2e-58
pir||A55214 carboxysome formation protein ccmA - Synechocystis s... 224 1e-57
sp|O66496|KDSA_AQUAE 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 118 7e-26
gb|AAD30227.1|AC007202_9 (AC007202) Strong similarity to gb|Y142... 113 3e-24
sp|O50044|KDSA_PEA 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (PH... 112 4e-24
gb|AAD34685.1|AC006341_13 (AC006341) Similar to gb|Y14272 3-deox... 110 2e-23
pir||D82700 2-dehydro-3-deoxyphosphooctonate aldolase XF1289 [im... 106 4e-22
sp|Q9ZE84|KDSA_RICPR 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 103 2e-21
sp|O68662|KDSA_ACTPL 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 102 4e-21
sp|P95514|KDSA_PASHA 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 100 3e-20
sp|P56060|KDSA_HELPY 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 95 9e-19
pir||F81381 2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.... 95 9e-19
sp|Q9ZFK4|KDSA_PSEAE 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 94 2e-18
pir||F82108 2-dehydro-3-deoxyphosphooctonate aldolase VC2175 [im... 94 2e-18
emb|CAA29067.1| (X05552) 3-deoxy-D-manno-octulosonic acid 8-phos... 93 3e-18
sp|P17579|KDSA_ECOLI 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 92 5e-18
sp|Q9ZN55|KDSA_HELPJ 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 92 6e-18
pir||B81100 2-dehydro-3-deoxyphosphooctonate aldolase NMB1283 [i... 88 9e-17
sp|P45251|KDSA_HAEIN 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 88 1e-16
sp|P77849|KDSA_CHLTR 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 87 3e-16
pir||G81840 2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.... 86 5e-16
gb|AAB17556.1| (U72493) 3-deoxy-D-manno-octulosonate 8-phosphate... 84 2e-15
pir||E81747 2-dehydro-3-deoxyphosphooctonate aldolase TC0025 [im... 83 2e-15
sp|Q46225|KDSA_CHLPS 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 83 3e-15
sp|Q9Z7I4|KDSA_CHLPN 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE (... 81 1e-14
pir||E81621 2-dehydro-3-deoxyphophooctonate aldolase CP0025 [imp... 81 1e-14
dbj|BAA98928.1| (AP002547) KDO synthetase [Chlamydophila pneumon... 81 1e-14
pir||E81054 chorismate mutase-related protein NMB1692 [imported]... 74 2e-12
>pir||B75161 phospho-2-dehydro-3-deoxyheptonate aldolase PAB0297 - Pyrococcus
abyssi (strain Orsay) >gi|5457879|emb|CAB49369.1|
(AJ248284) PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE
[Pyrococcus abyssi]
Length = 265
Score = 529 bits (1348), Expect = e-149
Identities = 265/265 (100%), Positives = 265/265 (100%)
Query: 1 MRMMKYSKEYKDKTIIKVGDVKIGEGFTIMAGPCAIESEDQIMKTAEFLAELGIKILRGG 60
MRMMKYSKEYKDKTIIKVGDVKIGEGFTIMAGPCAIESEDQIMKTAEFLAELGIKILRGG
Sbjct: 1 MRMMKYSKEYKDKTIIKVGDVKIGEGFTIMAGPCAIESEDQIMKTAEFLAELGIKILRGG 60
Query: 61 AFKPRTSPYSFQGYGEKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNS 120
AFKPRTSPYSFQGYGEKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNS
Sbjct: 61 AFKPRTSPYSFQGYGEKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNS 120
Query: 121 QNFELLKEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRF 180
QNFELLKEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRF
Sbjct: 121 QNFELLKEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRF 180
Query: 181 TLDISAVPVVKELSHLPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALS 240
TLDISAVPVVKELSHLPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALS
Sbjct: 181 TLDISAVPVVKELSHLPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALS 240
Query: 241 DSKQQLTFEDFKILLDELRKLGWRG 265
DSKQQLTFEDFKILLDELRKLGWRG
Sbjct: 241 DSKQQLTFEDFKILLDELRKLGWRG 265
>pir||E72388 hypothetical protein TM0343 - Thermotoga maritima (strain MSB8)
>gi|4980844|gb|AAD35429.1|AE001715_5 (AE001715)
chorismate mutase, putative [Thermotoga maritima]
Length = 338
Score = 333 bits (846), Expect = 1e-90
Identities = 160/253 (63%), Positives = 204/253 (80%), Gaps = 1/253 (0%)
Query: 10 YKDKTIIKVGDVKIGEG-FTIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRTSP 68
+ + T+I +GDVKIG G FTI+AGPC++E + +M+TA FL+ELG+K+LRGGA+KPRTSP
Sbjct: 77 HPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSP 136
Query: 69 YSFQGYGEKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKE 128
YSFQG GEK L+++R+AAD+YG+ VTE + + V++YADI+QIGARN+QNF LL +
Sbjct: 137 YSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSK 196
Query: 129 VGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVP 188
G KPVLLKRG NTI+E L SAEYI + GN +ILCERGIRTFE +TR TLDISAVP
Sbjct: 197 AGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVP 256
Query: 189 VVKELSHLPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTF 248
++++ SHLPI+VDPSH GRR LVIPL++AA AVGA G++VEVHP+PE ALSD KQ L F
Sbjct: 257 IIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDF 316
Query: 249 EDFKILLDELRKL 261
E FK L+ E++KL
Sbjct: 317 ELFKELVQEMKKL 329
>pir||E72643 probable phospho-2-dehydro-3-deoxyheptonate aldolase APE0581 -
Aeropyrum pernix (strain K1) >gi|5104234|dbj|BAA79549.1|
(AP000060) 276aa long hypothetical
phospho-2-dehydro-3-deoxyheptonate aldolase [Aeropyrum
pernix]
Length = 276
Score = 321 bits (815), Expect = 4e-87
Identities = 161/252 (63%), Positives = 201/252 (78%), Gaps = 1/252 (0%)
Query: 9 EYKDKTIIKVGDVKIGEGF-TIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRTS 67
E + +T+++V V+IG G ++AGPC++ES +Q+ + A + E G +LRGGAFKPRTS
Sbjct: 20 EERRETVVEVEGVRIGGGSKAVIAGPCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTS 79
Query: 68 PYSFQGYGEKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLK 127
PYSFQG G + LK +R+A DE GL VTEV+D RHVE VS+YAD+LQIGARN QNF LL+
Sbjct: 80 PYSFQGLGLEGLKLLRRAGDEAGLPVVTEVLDPRHVETVSRYADMLQIGARNMQNFPLLR 139
Query: 128 EVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAV 187
EVGR KPVLLKRG GNT++ELL +AEYI+ +GN V+L ERGIRTFE STRFTLD++AV
Sbjct: 140 EVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAV 199
Query: 188 PVVKELSHLPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLT 247
V+KE +HLP++VDPSHPAGRRSLV LAKA A GADG++VEVHP+PE ALSD+KQQLT
Sbjct: 200 AVLKEATHLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHPNPEEALSDAKQQLT 259
Query: 248 FEDFKILLDELR 259
+F L+ ELR
Sbjct: 260 PGEFARLMGELR 271
>gb|AAK40641.1| Phospho-2-dehydro-3-deoxyheptonate aldolase /chorismate mutase
(aroG) [Sulfolobus solfataricus]
Length = 331
Score = 309 bits (784), Expect = 2e-83
Identities = 151/252 (59%), Positives = 193/252 (75%), Gaps = 1/252 (0%)
Query: 11 KDKTIIKVGDVKIGEGFTIMA-GPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRTSPY 69
K T++ V DV+IG I+A GPCA+E+E+Q++ TA+ + G +LRGGA+KPRTSPY
Sbjct: 72 KQPTVVNVKDVEIGSKKVIVAAGPCAVENEEQVLTTAKAVKRAGASLLRGGAYKPRTSPY 131
Query: 70 SFQGYGEKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEV 129
SFQG GE+ +K +R+ DE GL VTE+MDTR + S+Y D++QIGARN+QNF LLKEV
Sbjct: 132 SFQGLGEEGVKILRRVGDEVGLPIVTEIMDTRDSNIFSQYVDMIQIGARNAQNFSLLKEV 191
Query: 130 GRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVPV 189
G+ KPVLLKRGMGNT++E L +AEYI+ +GN N +LCERGIRTFE STRFTLDI +
Sbjct: 192 GKLGKPVLLKRGMGNTVEEWLQAAEYILLEGNGNTVLCERGIRTFEKSTRFTLDIGGMVA 251
Query: 190 VKELSHLPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTFE 249
K ++HLPI DPSHPAG+R LV LA AA A GAD +L+EVHP PE ALSDS+QQLT E
Sbjct: 252 AKLMTHLPICADPSHPAGKRELVHSLALAAVAAGADMLLIEVHPHPEKALSDSEQQLTPE 311
Query: 250 DFKILLDELRKL 261
F++L++ +R L
Sbjct: 312 SFEVLMNRIRTL 323
>pir||A75449 phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase -
Deinococcus radiodurans (strain R1)
>gi|6458729|gb|AAF10576.1|AE001952_4 (AE001952)
phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate
mutase [Deinococcus radiodurans]
Length = 376
Score = 298 bits (756), Expect = 3e-80
Identities = 151/256 (58%), Positives = 195/256 (75%), Gaps = 2/256 (0%)
Query: 8 KEYKDKTIIKVGDVKIGEGFT--IMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPR 65
K ++ T++ + V+IG G ++AGPC+IESE+Q+ +TA FL G+KILRGGA+KPR
Sbjct: 111 KVKREDTVLDIDGVRIGGGEAPIVIAGPCSIESEEQMEQTAAFLQGKGVKILRGGAYKPR 170
Query: 66 TSPYSFQGYGEKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFEL 125
TSPY FQG G L + A E+G + VTEVMDTR V++VS+YADILQIGARN NF L
Sbjct: 171 TSPYGFQGMGVDGLILGSRVAKEHGQLFVTEVMDTRDVDVVSEYADILQIGARNMHNFAL 230
Query: 126 LKEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDIS 185
L+EVGR +PVLLKRG+ TI+E LY+AEYI+S+GN VILCERGIRT+E TR TLD+S
Sbjct: 231 LREVGRARRPVLLKRGLSATIEEWLYAAEYILSEGNNEVILCERGIRTYEKWTRNTLDLS 290
Query: 186 AVPVVKELSHLPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQ 245
AV + K+ +HLP++VD +H AGRR L+IPLAKAA AVGADG+ VEVHP+P ALSD++QQ
Sbjct: 291 AVALAKQETHLPVIVDVTHAAGRRDLLIPLAKAAIAVGADGIHVEVHPNPATALSDNEQQ 350
Query: 246 LTFEDFKILLDELRKL 261
L F ++ L+ + L
Sbjct: 351 LDFAGYEKFLEGVGSL 366
>sp|P39912|AROG_BACSU AROA(G) PROTEIN [INCLUDES: PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE
ALDOLASE (PHOSPHO-2-KETO-3-DEOXYHEPTONATE ALDOLASE)
(DAHP SYNTHETASE) (3-DEOXY-D-ARABINO-HEPTULOSONATE
7-PHOSPHATE SYNTHASE); CHORISMATE MUTASE ]
>gi|98429|pir||S21418 2-dehydro-3-deoxyphosphoheptonate
aldolase (EC 4.1.2.15) - Bacillus subtilis
>gi|39813|emb|CAA46760.1| (X65945)
phospho-2-dehydro-3-deoxyheptonate aldolase [Bacillus
subtilis] >gi|2293220|gb|AAC00298.1| (AF008220) DAPH
synthase-chorismate mutase [Bacillus subtilis]
>gi|2635459|emb|CAB14953.1| (Z99119)
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
[Bacillus subtilis]
Length = 358
Score = 290 bits (734), Expect = 1e-77
Identities = 140/255 (54%), Positives = 188/255 (72%), Gaps = 1/255 (0%)
Query: 8 KEYKDKTIIKVGDVKIGEGFT-IMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRT 66
K+ + TI+ + KIG+G + GPCA+ES +Q+ + A + GIKILRGGAFKPRT
Sbjct: 99 KKKPEDTIVDIKGEKIGDGQQRFIVGPCAVESYEQVAEVAAAAKKQGIKILRGGAFKPRT 158
Query: 67 SPYSFQGYGEKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELL 126
SPY FQG G + L+ +++ ADE+ L ++E++ H+E Y D++QIGARN QNFELL
Sbjct: 159 SPYDFQGLGVEGLQILKRVADEFDLAVISEIVTPAHIEEALDYIDVIQIGARNMQNFELL 218
Query: 127 KEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISA 186
K G +KPVLLKRG+ TI E + +AEYIMSQGN+ +ILCERGIRT+ET+TR TLDISA
Sbjct: 219 KAAGAVKKPVLLKRGLAATISEFINAAEYIMSQGNDQIILCERGIRTYETATRNTLDISA 278
Query: 187 VPVVKELSHLPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQL 246
VP++K+ +HLP+ VD +H GRR L++P AKAA A+GADGV+ EVHPDP ALSDS QQ+
Sbjct: 279 VPILKQETHLPVFVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHPDPSVALSDSAQQM 338
Query: 247 TFEDFKILLDELRKL 261
+F+ L+EL+ +
Sbjct: 339 AIPEFEKWLNELKPM 353
>emb|CAA64712.1| (X95439) chorismate mutase [Staphylococcus xylosus]
Length = 268
Score = 282 bits (714), Expect = 3e-75
Identities = 135/240 (56%), Positives = 179/240 (74%), Gaps = 1/240 (0%)
Query: 23 IGEGF-TIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRTSPYSFQGYGEKALKW 81
IG+G + + GPC++ES++Q+ A L G K +RGGAFKPRTSPY FQG G + LK
Sbjct: 19 IGDGNKSFVFGPCSVESQEQVDAVAANLQARGEKFIRGGAFKPRTSPYDFQGLGVEGLKI 78
Query: 82 MRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLKRG 141
++ D+YGL V+E+++ E+ +Y D+ QIGARN QNFELLKE GR KPVLLKRG
Sbjct: 79 LKNTKDKYGLNVVSEIVNPADFEVADEYLDVFQIGARNMQNFELLKEAGRSNKPVLLKRG 138
Query: 142 MGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVPVVKELSHLPIVVD 201
+ TI+E +Y+AEYI SQGNEN+ILCERGIRT+E +TR TLDISAVP++K+ +HLP++VD
Sbjct: 139 LSATIEEFIYAAEYIASQGNENIILCERGIRTYEKATRNTLDISAVPILKQGTHLPVMVD 198
Query: 202 PSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTFEDFKILLDELRKL 261
+H GR+ ++IP AKA AVGADG++ EVHPDP ALSDS QQ+ F +F +E++ L
Sbjct: 199 VTHSTGRKDIMIPTAKAGLAVGADGIMAEVHPDPSVALSDSGQQMDFNEFDKFYNEIKPL 258
>dbj|BAB06961.1| (AP001518) phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate
mutase [Bacillus halodurans]
Length = 364
Score = 273 bits (690), Expect = 2e-72
Identities = 130/252 (51%), Positives = 182/252 (71%), Gaps = 1/252 (0%)
Query: 8 KEYKDKTIIKVGDVKIGEGFT-IMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRT 66
K++ + TI+ V +G+G ++ GPCA+ES +Q+ A+ + G+K+LRGGA+KPRT
Sbjct: 99 KKHPENTIVNVKGETVGDGEQRLIMGPCAVESYEQVAAVAKEVKARGLKLLRGGAYKPRT 158
Query: 67 SPYSFQGYGEKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELL 126
SPY FQG G + LK +++ ADE+ L ++E++ +E Y D++QIGARN QNFELL
Sbjct: 159 SPYDFQGLGLEGLKILKRVADEFDLAVISEIVTPADLEEAIDYIDVIQIGARNMQNFELL 218
Query: 127 KEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISA 186
K G KPVLLKRG+ TI E +++AEYI+S+GN ++LCERGIRT+E +TR TLDISA
Sbjct: 219 KAAGSVNKPVLLKRGLSATISEFIHAAEYIVSKGNGQIMLCERGIRTYEKATRNTLDISA 278
Query: 187 VPVVKELSHLPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQL 246
VP++K+ +HLP++VD +H GRR L++P AKAA A+GAD V+ EVHPDP ALSDS QQ+
Sbjct: 279 VPILKQETHLPVLVDVTHSTGRRDLLLPTAKAALAIGADAVMAEVHPDPAVALSDSAQQM 338
Query: 247 TFEDFKILLDEL 258
F +D+L
Sbjct: 339 DIGQFHAFVDDL 350
>emb|CAC11392.1| (AL445063) probable gene for 32.4kD protein (ccmA, required for
carboxysome formation) [Thermoplasma acidophilum]
Length = 285
Score = 266 bits (673), Expect = 2e-70
Identities = 126/256 (49%), Positives = 185/256 (72%), Gaps = 1/256 (0%)
Query: 6 YSKEYKDKTIIKVGDVKIGEGFTIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPR 65
YSK++++K+++ V ++IGEG + AGPC++E+E I+ A + G ++RGGAFKPR
Sbjct: 23 YSKKFREKSVVDVSGLRIGEGLVVAAGPCSVENEAMILDIARSVKAAGADMIRGGAFKPR 82
Query: 66 TSPYSFQGYGEKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFEL 125
TSPYSFQG EK ++++ +A +E GL VTE+M+ + + D+LQ+G+RN+QNF+L
Sbjct: 83 TSPYSFQGLAEKGIEYLVEAREETGLPIVTEIMNPEYYRYFDR-VDMLQVGSRNAQNFDL 141
Query: 126 LKEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDIS 185
L+ +G+Q+KPVLLK GMGNT +E L +AEYI+S GN NV+LC RG+R E STRFT+++
Sbjct: 142 LRFLGKQKKPVLLKNGMGNTAREWLETAEYILSGGNGNVVLCYRGVRGIENSTRFTMNVG 201
Query: 186 AVPVVKELSHLPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQ 245
++ K +HLPI DPSH +GRR V +A A+ A GAD + +EVH DP+NALSDS+QQ
Sbjct: 202 SIIYAKSETHLPICADPSHASGRRDFVESMALASVAAGADMLEIEVHNDPDNALSDSEQQ 261
Query: 246 LTFEDFKILLDELRKL 261
+ D K ++++ R L
Sbjct: 262 IRPVDLKRIIEKARAL 277
>dbj|BAA85151.1| (AB018197) carboxysome formation protein [Synechococcus sp. MA19]
Length = 352
Score = 266 bits (672), Expect = 2e-70
Identities = 134/247 (54%), Positives = 180/247 (72%), Gaps = 3/247 (1%)
Query: 19 GDVKIGEG--FTIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRTSPYSFQGYGE 76
G V GE ++AGPC++E+E+ I++TA+ + G K LRGGA+KPRTSPY+FQG+GE
Sbjct: 92 GTVVFGEHHPLVVVAGPCSVENEEMIIETAQRVKAAGAKFLRGGAYKPRTSPYAFQGHGE 151
Query: 77 KALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPV 136
AL+ + +A + GL +TEVMDT ++ + + ADI+Q+GARN QNF LLK+VG Q KPV
Sbjct: 152 SALELLARAREVSGLGVITEVMDTADLDKIVEVADIVQVGARNMQNFSLLKKVGAQPKPV 211
Query: 137 LLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETS-TRFTLDISAVPVVKELSH 195
LLKRGM TI+E L +AEYI++ GN NVILCERGIR+F+ TR TLDIS VPV++ L+H
Sbjct: 212 LLKRGMSATIEEWLMAAEYILAAGNPNVILCERGIRSFDRQYTRNTLDISVVPVLRNLTH 271
Query: 196 LPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTFEDFKILL 255
LPI++DPSH G + V ++ AA A G D +++EVHP+P+ ALSD Q LT E F L+
Sbjct: 272 LPIMIDPSHGTGWAAYVPSMSMAAIAAGCDSLMIEVHPNPKKALSDGPQSLTPEAFDQLM 331
Query: 256 DELRKLG 262
EL +G
Sbjct: 332 QELAVIG 338
>pir||S74729 carboxysome formation protein ccmA - Synechocystis sp. (strain PCC
6803) >gi|1651954|dbj|BAA16880.1| (D90901) carboxysome
formation protein [Synechocystis sp.]
Length = 351
Score = 256 bits (648), Expect = 2e-67
Identities = 127/247 (51%), Positives = 175/247 (70%), Gaps = 3/247 (1%)
Query: 19 GDVKIGEGF--TIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRTSPYSFQGYGE 76
G V IG+ ++AGPC++E+E I++TA + G + LRGGAFKPRTSPY+FQG+GE
Sbjct: 92 GPVAIGKNHPVAVVAGPCSVENETMIVETARRVKAAGAQFLRGGAFKPRTSPYAFQGHGE 151
Query: 77 KALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPV 136
AL + A + GL +TEVMD +E++++ AD++Q+GARN QNF +LK+VG Q+KPV
Sbjct: 152 SALGLLAAAKEATGLGIITEVMDAADLEIIAEVADVIQVGARNMQNFSMLKKVGAQDKPV 211
Query: 137 LLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETS-TRFTLDISAVPVVKELSH 195
LLKRGM TI E L +AEYI++ GN NVILCERGIRTF+ TR LD+S +PV++ L+H
Sbjct: 212 LLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDGHYTRNCLDLSVLPVLRSLTH 271
Query: 196 LPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTFEDFKILL 255
LPI++DPSH G+ V +A AA A G D +++EVHP+P A+SD Q LT + F +
Sbjct: 272 LPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKAMSDGPQSLTPDRFDETM 331
Query: 256 DELRKLG 262
+L +G
Sbjct: 332 KQLAVIG 338
>pir||H72073 phospho-2-dehydro-3-deoxyheptonate aldolase, probable CP0270
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39) >gi|4376769|gb|AAD18624.1| (AE001633)
Deoxyheptonate Aldolase [Chlamydophila pneumoniae
CWL029] >gi|7189195|gb|AAF38130.1| (AE002186)
phospho-2-dehydro-3-deoxyheptonate aldolase, putative
[Chlamydophila pneumoniae AR39]
>gi|8978854|dbj|BAA98690.1| (AP002546) deoxyheptonate
aldolase [Chlamydophila pneumoniae J138]
Length = 285
Score = 240 bits (606), Expect = 1e-62
Identities = 117/237 (49%), Positives = 170/237 (71%), Gaps = 3/237 (1%)
Query: 20 DVKIGEGFTIM-AGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRTSPYSFQGYGEKA 78
++ GEG I+ AGPC +ES + + +A + E G ++ RG KPRTSP+SFQG+ ++
Sbjct: 32 NLSFGEGSPILIAGPCTLESYEHTVSSALTVKEAGAQVFRGSIRKPRTSPFSFQGWEKEC 91
Query: 79 LKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLL 138
+ W ++A +GL T TEV+D R VE+ +++ DIL+IGA+N N LL+EV + +P++L
Sbjct: 92 VLWHKEAQSIHGLPTETEVLDVRDVEITAEHVDILRIGAKNMHNTPLLQEVSKSHRPIIL 151
Query: 139 KRGMGNTIQELLYSAEYIMSQGNE--NVILCERGIRTFETSTRFTLDISAVPVVKELSHL 196
KR T++E L +AEYI++ VILCERGIRTFE STR+TLD++ V ++KE+S L
Sbjct: 152 KRSPAATLEEWLCAAEYILASSPSCPGVILCERGIRTFEHSTRYTLDLNTVALLKEISSL 211
Query: 197 PIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTFEDFKI 253
P++VDPSH AG+RSLV+PLA A +VGADG+++EVH PE AL D+KQQ+T E+ +
Sbjct: 212 PVIVDPSHAAGKRSLVLPLASAGLSVGADGLMIEVHAHPEKALCDAKQQITPEELHL 268
>pir||H81678 phospho-2-dehydro-3-deoxyheptonate aldolase, probable TC0661
[imported] - Chlamydia muridarum (strain Nigg)
>gi|7190696|gb|AAF39484.1| (AE002334)
phospho-2-dehydro-3-deoxyheptonate aldolase, putative
[Chlamydia muridarum]
Length = 279
Score = 227 bits (572), Expect = 1e-58
Identities = 114/224 (50%), Positives = 156/224 (68%), Gaps = 1/224 (0%)
Query: 24 GEGFTIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRTSPYSFQGYGEKALKWMR 83
G I+AGPC +ES++ + + + G I RG KPRT+PYSFQG+ + W
Sbjct: 31 GRAPIIIAGPCTLESQEHAISLGLKVKKSGAHIFRGSIRKPRTNPYSFQGWSPDCVVWHS 90
Query: 84 KAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLKRGMG 143
+A +GL+T TEV+D R VE+ +++ D+L+IGARN QNF LL EV R +PV+LKR
Sbjct: 91 RAKAVHGLLTETEVLDVRDVEITAEHVDLLRIGARNMQNFVLLDEVSRSHRPVILKRNPA 150
Query: 144 NTIQELLYSAEYIM-SQGNENVILCERGIRTFETSTRFTLDISAVPVVKELSHLPIVVDP 202
T++E L +AEY++ S VILCERGIR+FETSTR+TLD+++V VK+ + LP++VDP
Sbjct: 151 ATVKEWLGAAEYLLRSASCPGVILCERGIRSFETSTRYTLDLNSVAWVKKETSLPVIVDP 210
Query: 203 SHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQL 246
SH AG R LV+PLA+AA A+GADGV++EVH PE AL D Q +
Sbjct: 211 SHAAGIRDLVLPLARAAVALGADGVMIEVHEHPELALCDGAQHI 254
>pir||B71522 probable deoxyheptonate aldolase - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328807|gb|AAC67978.1| (AE001311)
phospho-2-dehydro-3-deoxyheptonate aldolase [Chlamydia
trachomatis]
Length = 278
Score = 226 bits (571), Expect = 2e-58
Identities = 119/244 (48%), Positives = 164/244 (66%), Gaps = 9/244 (3%)
Query: 21 VKIGEGFTIM-AGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRTSPYSFQGYGEKAL 79
V IG G I+ AGPC +ES++ + + G I RG KPRT+P+SFQG+ +
Sbjct: 26 VSIGGGTPIIIAGPCTLESQEHAITLGLQVKSAGAHIFRGSIRKPRTNPHSFQGWPPDHV 85
Query: 80 KWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLK 139
W +A +GL+T TEV+D R VE+ +++ D+L++GARN QNF LL EVG+ +PV+LK
Sbjct: 86 VWHSRAKAVHGLLTETEVLDVRDVEITAEHVDLLRVGARNMQNFVLLDEVGQSHRPVILK 145
Query: 140 RGMGNTIQELLYSAEYIMSQGN-ENVILCERGIRTFETSTRFTLDISAVPVVKELSHLPI 198
R TI E L +AEY++ + VILCERGIRTFET+TR+TLD++ V +K+ + LP+
Sbjct: 146 RNPSATISEWLSAAEYLLQHASCPGVILCERGIRTFETTTRYTLDLNTVAWIKKETSLPV 205
Query: 199 VVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTFEDFKILLDEL 258
+VDPSH +GRR LV+PLA+AA A+GADG+++EVH PE AL D Q IL EL
Sbjct: 206 IVDPSHASGRRDLVLPLARAAIALGADGLMIEVHEHPELALCDGSQH-------ILPCEL 258
Query: 259 RKLG 262
+LG
Sbjct: 259 EELG 262
>pir||A55214 carboxysome formation protein ccmA - Synechocystis sp. (PCC 6803)
>gi|499298|dbj|BAA05463.1| (D26444) 32.4kD protein
[Synechocystis sp.]
Length = 302
Score = 224 bits (564), Expect = 1e-57
Identities = 112/208 (53%), Positives = 151/208 (71%), Gaps = 3/208 (1%)
Query: 19 GDVKIGEGF--TIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKPRTSPYSFQGYGE 76
G V IG+ ++AGPC++E+E I++TA + G + LRGGAFKPRTSPY+FQG+GE
Sbjct: 92 GPVAIGKNHPVAVVAGPCSVENETMIVETARRVKAAGAQFLRGGAFKPRTSPYAFQGHGE 151
Query: 77 KALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPV 136
AL + A + GL +TEVMD +E++++ AD++Q+GARN QNF +LK+VG Q+KPV
Sbjct: 152 SALGLLAAAKEATGLGIITEVMDAADLEIIAEVADVIQVGARNMQNFSMLKKVGAQDKPV 211
Query: 137 LLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETS-TRFTLDISAVPVVKELSH 195
LLKRGM TI E L +AEYI++ GN NVILCERGIRTF+ TR LD+S +PV++ L+H
Sbjct: 212 LLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDGHYTRNCLDLSVLPVLRSLTH 271
Query: 196 LPIVVDPSHPAGRRSLVIPLAKAAYAVG 223
LPI++DPSH G+ V +A AA A G
Sbjct: 272 LPIMIDPSHGTGKSEYVPSMAMAAIARG 299
>sp|O66496|KDSA_AQUAE 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|7436649|pir||E70308
3-deoxy-d-manno-octulosonic acid 8-phosphate synthase -
Aquifex aeolicus >gi|2982835|gb|AAC06457.1| (AE000673)
3-deoxy-d-manno-octulosonic acid 8-phosphate synthase
[Aquifex aeolicus]
Length = 267
Score = 118 bits (293), Expect = 7e-26
Identities = 79/256 (30%), Positives = 135/256 (51%), Gaps = 23/256 (8%)
Query: 25 EGFTIMAGPCAIESEDQIMKTAEFLAELGIK------ILRGGAFKP-RTSPYSFQGYG-E 76
E F ++AGPCAIESE+ ++K E + L K + + K R+S +SF+G+G E
Sbjct: 2 EKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLE 61
Query: 77 KALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPV 136
+K +RK +E+GL T++ ++ E V++ ADI+QI A + +LL + + V
Sbjct: 62 YGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAV 121
Query: 137 LLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVPVVKELSHL 196
+K+G + E + G + + L ERG TF + +D ++P++K+ +
Sbjct: 122 NVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGT-TFGYNN-LVVDFRSLPIMKQWAK- 178
Query: 197 PIVVDPSHPA-----------GRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQ 245
++ D +H G R + PL +AA AVG DGV +E HP+PE ALSD+ Q
Sbjct: 179 -VIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQ 237
Query: 246 LTFEDFKILLDELRKL 261
L + +++ + ++
Sbjct: 238 LPLSQLEGIIEAILEI 253
>gb|AAD30227.1|AC007202_9 (AC007202) Strong similarity to gb|Y14272
3-deoxy-D-manno-2-octulosonate-8-phosphate synthase from
Pisum sativum. ESTs gb|AA067485 and gb|AI100551 come
from this gene. [Arabidopsis thaliana]
Length = 290
Score = 113 bits (279), Expect = 3e-24
Identities = 88/268 (32%), Positives = 132/268 (48%), Gaps = 26/268 (9%)
Query: 14 TIIKVGDVKIGEGFTIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKP------RTS 67
T + +K E F ++AGP IESE+ I++ A+ + ++ K+ FK RTS
Sbjct: 4 TSLLYNQLKAAEPFFLLAGPNVIESEEHILRMAKHIKDISTKVGLPLVFKSSFDKANRTS 63
Query: 68 PYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELL 126
SF+G G + LK + K Y L VT+V ++ E V K ADI+QI A + +LL
Sbjct: 64 SKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQTDLL 123
Query: 127 KEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISA 186
+ K + +K+G + SAE I GN NV++CERG T +D
Sbjct: 124 VAAAQTGKIINIKKGQFCAPSVMENSAEKIRLAGNPNVMVCERG--TMFGYNDLIVDPRN 181
Query: 187 VPVVKELSHLPIVVDPSH----PAGR------------RSLVIPLAKAAYAVGADGVLVE 230
++E ++ P+V D +H PAG+ R L+ +A+ A AVG DG+ +E
Sbjct: 182 FEWMRE-ANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFME 240
Query: 231 VHPDPENALSDSKQQLTFEDFKILLDEL 258
VH DP +A D Q + LL+EL
Sbjct: 241 VHDDPLSAPVDGPTQWPLRHLEELLEEL 268
>sp|O50044|KDSA_PEA 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|7436655|pir||T06816
2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16)
- garden pea >gi|2695861|emb|CAA74644.1| (Y14272)
3-deoxy-D-manno-2-octulosonate-8-phosphate synthase
[Pisum sativum] >gi|2695863|emb|CAA74645.1| (Y14273)
3-deoxy-D-manno-2-octulosonate-8-phosphate synthase
[Pisum sativum]
Length = 290
Score = 112 bits (278), Expect = 4e-24
Identities = 85/270 (31%), Positives = 136/270 (49%), Gaps = 26/270 (9%)
Query: 12 DKTIIKVGDVKIGEGFTIMAGPCAIESEDQIMKTAEFL----AELGIKILRGGAFKP--R 65
D +++ +K + F ++AGP IESE+ IM+ A+ + ++ GI ++ +F R
Sbjct: 2 DPSVLLYNQLKAADPFFLLAGPNVIESEEHIMRMAKHIKTISSKFGIPLIFKSSFDKANR 61
Query: 66 TSPYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFE 124
TS SF+G G + LK + K Y + VT+V + E V + ADI+QI A + +
Sbjct: 62 TSSKSFRGPGIVEGLKILEKVKIAYDIPIVTDVHEASQCEPVGRVADIIQIPAFLCRQTD 121
Query: 125 LLKEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDI 184
LL + K + +K+G + SAE + GN NV++CERG T +D
Sbjct: 122 LLVAAAKTGKIINIKKGQFCAPSVMANSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDP 179
Query: 185 SAVPVVKELSHLPIVVDPSH----PAGR------------RSLVIPLAKAAYAVGADGVL 228
+ ++E ++ P+V D +H PAG+ R L+ +A+ + AVG DG+
Sbjct: 180 RNLEWMRE-ANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTSVAVGVDGIF 238
Query: 229 VEVHPDPENALSDSKQQLTFEDFKILLDEL 258
+EVH DP NA D Q + LL+EL
Sbjct: 239 MEVHDDPLNAPVDGPTQWPLRHLEELLEEL 268
>gb|AAD34685.1|AC006341_13 (AC006341) Similar to gb|Y14272
3-deoxy-D-manno-2-octulosonate-8-phosphate synthase from
Pisum sativum. [Arabidopsis thaliana]
Length = 299
Score = 110 bits (272), Expect = 2e-23
Identities = 84/259 (32%), Positives = 129/259 (49%), Gaps = 26/259 (10%)
Query: 23 IGEGFTIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKP------RTSPYSFQGYG- 75
+ E F ++AGP IESE+ +++ A+ + ++ K+ FK RTS SF+G G
Sbjct: 22 VAEPFFLLAGPNVIESEEHVLRMAKSIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGM 81
Query: 76 EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKP 135
+ LK + K + L VT+V ++ E V K ADI+QI A + +LL + K
Sbjct: 82 AEGLKILEKVKVAFDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQTDLLVAAAQSGKI 141
Query: 136 VLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVPVVKELSH 195
+ +K+G + SAE + GN NV++CERG T +D + ++E +
Sbjct: 142 INIKKGQFCGHSVMRNSAEKVRLAGNPNVMVCERG--TMFGYNDLIVDPRNLEWMRE-AD 198
Query: 196 LPIVVDPSH----PAGR------------RSLVIPLAKAAYAVGADGVLVEVHPDPENAL 239
P+V D +H PAG+ R L+ +A+ A AVG DG+ +EVH DP NA
Sbjct: 199 CPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAP 258
Query: 240 SDSKQQLTFEDFKILLDEL 258
D Q + LL+EL
Sbjct: 259 VDGPTQWPLRHLEELLEEL 277
>pir||D82700 2-dehydro-3-deoxyphosphooctonate aldolase XF1289 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9106278|gb|AAF84098.1|AE003962_8 (AE003962)
2-dehydro-3-deoxyphosphooctonate aldolase [Xylella
fastidiosa]
Length = 295
Score = 106 bits (261), Expect = 4e-22
Identities = 79/260 (30%), Positives = 125/260 (47%), Gaps = 21/260 (8%)
Query: 20 DVKIGEGFTIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKP------RTSPYSFQG 73
+V + + ++AGPC IES + TA L E+ K+ FK RTS SF+G
Sbjct: 26 EVGLNQPLFLIAGPCVIESLQLQLDTAGVLKEITSKLGLNFIFKSSFDKANRTSGSSFRG 85
Query: 74 YG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQ 132
G E+ LK + + G+ +T+V + ++ V+ D+LQ A + + ++ V
Sbjct: 86 PGLEEGLKVLEAVKTQIGVPVLTDVHEYTPIDEVATVVDVLQTPAFLVRQTDFIRNVCAV 145
Query: 133 EKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVPVVKE 192
KPV +K+G + ++ E S GN +++CERG + D+ ++ V++E
Sbjct: 146 GKPVNIKKGQFLSPWDMKPVVEKAKSTGNSQILVCERGASFGYNN--LVSDMRSLAVMRE 203
Query: 193 LSHLPIVVDPSHPA-----------GRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSD 241
P+V D +H G+R V LA+AA AVG G+ E HPDP NALSD
Sbjct: 204 TG-CPVVFDATHSVQLPGAQGGRSGGQREFVPVLARAAVAVGISGLFAETHPDPPNALSD 262
Query: 242 SKQQLTFEDFKILLDELRKL 261
+LL+ L +L
Sbjct: 263 GPNAWPLHTMAMLLETLVEL 282
>sp|Q9ZE84|KDSA_RICPR 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|7436652|pir||F71714
2-dehydro-3-deoxyphosphooctonate aldolase (kdsA) RP062 -
Rickettsia prowazekii >gi|3860632|emb|CAA14533.1|
(AJ235270) 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(kdsA) [Rickettsia prowazekii]
Length = 275
Score = 103 bits (255), Expect = 2e-21
Identities = 81/268 (30%), Positives = 134/268 (49%), Gaps = 23/268 (8%)
Query: 13 KTIIKVGDVKIGEG--FTIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKP------ 64
K ++K+ ++KIG F ++AGPC IE +D + AE L +L K+ +K
Sbjct: 2 KKVVKLNNIKIGNDLQFVLIAGPCQIEGKDHALFMAEKLMKLTSKLSIPFIYKSSFDKAN 61
Query: 65 RTSPYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNF 123
RTS +G G EK L+ + K E+ +T+V +K DILQI A +
Sbjct: 62 RTSINGIRGLGIEKGLEILSKVKSEFDCPIITDVHSESQCIETAKVVDILQIPAFLCRQT 121
Query: 124 ELLKEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLD 183
+LLK + K V +K+G ++ + + G ++++ ERG + D
Sbjct: 122 DLLKAAAKTGKIVKVKKGQFLAPWDMKNVQKKLEVFGAKDILFTERG--SCFGYNNLVSD 179
Query: 184 ISAVPVVKELSHLPIVVDPSH----PAGR-------RSLVIPLAKAAYAVGADGVLVEVH 232
+ ++ ++ EL+ +P+V D +H P GR R V LAKAA +VG G+ +EVH
Sbjct: 180 MRSLAIMSELN-VPVVFDATHSVQQPGGRGGSSGGERKYVELLAKAAISVGIAGIYMEVH 238
Query: 233 PDPENALSDSKQQLTFEDFKILLDELRK 260
DP+NA SD + ++ + +L +L+K
Sbjct: 239 QDPDNAPSDGPCMIKLDNLESILIKLKK 266
>sp|O68662|KDSA_ACTPL 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|2996207|gb|AAC26633.1| (AF053723)
3-deoxy-D-manno-2-octulosonic acid 8-phosphate
synthetase [Actinobacillus pleuropneumoniae]
Length = 286
Score = 102 bits (252), Expect = 4e-21
Identities = 77/275 (28%), Positives = 136/275 (49%), Gaps = 37/275 (13%)
Query: 15 IIKVGDVKIGEG--FTIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKP------RT 66
I+KVG++++ FT+ G +ES D M+ E E+ K+ FK R+
Sbjct: 7 IVKVGNIEVANDKPFTLFGGMNVLESRDMAMRVCEQYVEVTNKLGVPYVFKASFDKANRS 66
Query: 67 SPYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFEL 125
S +S++G G E+ LK ++ D +G+ +T+V + + V++ DI+Q+ A ++ +L
Sbjct: 67 SIHSYRGPGMEEGLKIFQELKDTFGVSIITDVHEIYQCKPVAEVVDIIQLPAFLARQTDL 126
Query: 126 LKEVGRQ------EKPVLLKRG-MGNTIQELLYSAEYIMSQGNENVILCERGIRTFETST 178
++ + R +KP L G MGN +++ I GNENVILC+RG T
Sbjct: 127 VEAMARTGVVINVKKPQFLSPGQMGNIVEK-------IAECGNENVILCDRG--TNFGYD 177
Query: 179 RFTLDISAVPVVKELSH-LPIVVDPSHP-----------AGRRSLVIPLAKAAYAVGADG 226
+D+ ++K++S P++ D +H GRR V LA++ A+G G
Sbjct: 178 NLVVDMLGFNIMKKVSKGCPVIFDVTHSLQCRDPFGAASGGRRDQVTELARSGMAIGLAG 237
Query: 227 VLVEVHPDPENALSDSKQQLTFEDFKILLDELRKL 261
+ +E HPDP +A D L + + +++ +
Sbjct: 238 LFLEAHPDPNSAKCDGPSALPLSKLEAFVSQMKAI 272
>sp|P95514|KDSA_PASHA 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|1683632|gb|AAB36513.1| (U52971)
3-deoxy-D-manno-octulosonic acid synthetase KdsA
[Pasteurella haemolytica]
Length = 284
Score = 99.8 bits (245), Expect = 3e-20
Identities = 79/274 (28%), Positives = 135/274 (48%), Gaps = 37/274 (13%)
Query: 16 IKVGDVKIGEG--FTIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKP------RTS 67
IK+G+++I FT+ G +ES D M E E+ K+ FK R+S
Sbjct: 6 IKLGNLEIANDKPFTLFGGMNVLESRDMAMAVCEKYVEVTNKLGVPYVFKASFDKANRSS 65
Query: 68 PYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELL 126
+S++G G E+ LK ++ D +G+ +T+V + + V++ DI+Q+ A ++ +L+
Sbjct: 66 IHSYRGPGMEEGLKIFQELKDTFGVKIITDVHEIYQCKPVAEVVDIIQLPAFLARQTDLV 125
Query: 127 KEVGRQ------EKPVLLKRG-MGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTR 179
+ + R +KP L G MGN +++ I GN+ VILC+RG T
Sbjct: 126 EAMARTGAVINVKKPQFLSPGQMGNIVEK-------IEECGNDQVILCDRG--TNFGYDN 176
Query: 180 FTLDISAVPVVKELSH-LPIVVDPSHP-----------AGRRSLVIPLAKAAYAVGADGV 227
+D+ V+K++S P++ D +H +GRR+ V LA+A AVG G+
Sbjct: 177 LVVDMLGFSVMKQVSKGCPVIFDVTHSLQCRDPFGAASSGRRAQVTELARAGLAVGIAGL 236
Query: 228 LVEVHPDPENALSDSKQQLTFEDFKILLDELRKL 261
+E HPDP NA D L + + +++ +
Sbjct: 237 FLEAHPDPNNAKCDGPSALPLSTLEAFVGQMKAI 270
>sp|P56060|KDSA_HELPY 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|7436651|pir||C64520
3-deoxy-d-manno-octulosonic acid 8-phosphate synthetase
- Helicobacter pylori (strain 26695)
>gi|2313080|gb|AAD07076.1| (AE000523)
3-deoxy-d-manno-octulosonic acid 8-phosphate synthetase
(kdsA) [Helicobacter pylori 26695]
Length = 276
Score = 94.8 bits (232), Expect = 9e-19
Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 35/264 (13%)
Query: 29 IMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKP------RTSPYSFQGYG-EKALKW 81
++AGPC IES + + A L L FK RTS S++G G EK L+
Sbjct: 13 LIAGPCVIESLENLRSIATKLQPLANNERLDFYFKASFDKANRTSLESYRGPGLEKGLEM 72
Query: 82 MRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLKRG 141
++ +E+G +T+V ++ + +K ADILQI A + +L+ EV + V +K+G
Sbjct: 73 LQTIKEEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIVNIKKG 132
Query: 142 MGNTIQELLYSA--------EYIMSQGNENVI-----LCERGIRTFETSTRFTLDISAVP 188
+++ YS + I S E + LCERG +F +D+ ++
Sbjct: 133 QFMNPKDMQYSVLKALKTRDKSIQSPTYETALKNGVWLCERG-SSFGYGN-LVVDMRSLK 190
Query: 189 VVKELSHLPIVVDPSHP-----------AGRRSLVIPLAKAAYAVGADGVLVEVHPDPEN 237
+++E + P++ D +H +G S LA+AA AVG DG+ E H DP+N
Sbjct: 191 IMREFA--PVIFDATHSVQMPGGANGKSSGDSSFAPILARAAAAVGIDGLFAETHVDPKN 248
Query: 238 ALSDSKQQLTFEDFKILLDELRKL 261
ALSD L ++ + L+ ++ K+
Sbjct: 249 ALSDGANMLKPDELEQLVTDMLKI 272
>pir||F81381 2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16) Cj0384c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6967858|emb|CAB74220.1| (AL139075)
2-dehydro-3-deoxyphosphooctonate aldolase [Campylobacter
jejuni]
Length = 271
Score = 94.8 bits (232), Expect = 9e-19
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 33/262 (12%)
Query: 29 IMAGPCAIESEDQIMKTAEFLAELG----IKILRGGAFKP--RTSPYSFQGYG-EKALKW 81
++AGPC IES+D I K AE L I+ +F RTS SF+G G E+ LK
Sbjct: 6 LIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFDKANRTSINSFRGPGLEEGLKI 65
Query: 82 MRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLKRG 141
++ DE+G+ +T++ ++ VS+ AD+LQI A + +LL + + + +K+G
Sbjct: 66 LQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAFLCRQTDLLVAAAKTKAKINIKKG 125
Query: 142 MGNTIQELLYSAEYIM------SQGNE-----NVILCERGIRTFETSTRFTLDISAVPVV 190
++ YS + ++ +G E V + ERG +F +D+ ++ ++
Sbjct: 126 QFLNPSDIKYSVKKVLQTRGIEDEGYEAAQRNGVFVAERG-ASFGYG-NLVVDMRSLVIM 183
Query: 191 KELSHLPIVVDPSH-----------PAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENAL 239
+E + P++ D +H G+ V PLA+AA AVG DG E H +P AL
Sbjct: 184 REFA--PVIFDATHSVQMPGAAGGSSGGKSEFVEPLARAAAAVGIDGFFFETHINPCEAL 241
Query: 240 SDSKQQLTFEDFKILLDELRKL 261
D L K ++ L ++
Sbjct: 242 CDGPNMLNLTRLKNCVNTLLEI 263
>sp|Q9ZFK4|KDSA_PSEAE 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|11347267|pir||A83192
2-dehydro-3-deoxyphosphooctonate aldolase PA3636
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|4235471|gb|AAD13217.1| (AF098791)
2-dehydro-3-deoxyphosphooctonate aldolase [Pseudomonas
aeruginosa] >gi|9949795|gb|AAG07024.1|AE004783_9
(AE004783) 2-dehydro-3-deoxyphosphooctonate aldolase
[Pseudomonas aeruginosa]
Length = 281
Score = 94.0 bits (230), Expect = 2e-18
Identities = 72/267 (26%), Positives = 127/267 (46%), Gaps = 23/267 (8%)
Query: 15 IIKVGDVKIGEG--FTIMAGPCAIESEDQIMKTAE----FLAELGIKILRGGAFKP--RT 66
I++VGD++IG F + G +ES D M+ E +LGI + +F R+
Sbjct: 5 IVRVGDIQIGNDLPFVLFGGMNVLESRDLAMQVCEEYVRVTEKLGIPYVFKASFDKANRS 64
Query: 67 SPYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFEL 125
S +SF+G G E+ +K + + + +T+V + + V++ DI+Q+ A S+ +L
Sbjct: 65 SIHSFRGPGLEEGMKIFEEIKKTFKVPVITDVHEPFQAQPVAEVCDIIQLPAFLSRQTDL 124
Query: 126 LKEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDIS 185
+ + R + +K+ QE+ + GN+ +ILCERG + +D+
Sbjct: 125 VVAMARTNAVINIKKAQFLAPQEMKHILTKCEEAGNDRLILCERG--SSFGYNNLVVDML 182
Query: 186 AVPVVKELSHLPIVVDPSH-----------PAGRRSLVIPLAKAAYAVGADGVLVEVHPD 234
++K+ + P+ D +H GRR+ V LAKA + G+ +E HPD
Sbjct: 183 GFGIMKQFEY-PVFFDVTHALQMPGGRADSAGGRRAQVTDLAKAGLSQKLAGLFLEAHPD 241
Query: 235 PENALSDSKQQLTFEDFKILLDELRKL 261
PE+A D L + L +L++L
Sbjct: 242 PEHAKCDGPCALRLNKLEAFLSQLKQL 268
>pir||F82108 2-dehydro-3-deoxyphosphooctonate aldolase VC2175 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656729|gb|AAF95320.1| (AE004289)
2-dehydro-3-deoxyphosphooctonate aldolase [Vibrio
cholerae]
Length = 283
Score = 93.6 bits (229), Expect = 2e-18
Identities = 70/268 (26%), Positives = 129/268 (48%), Gaps = 23/268 (8%)
Query: 15 IIKVGDVKIGEG--FTIMAGPCAIESEDQIMKTAEFLAE----LGIKILRGGAFKP--RT 66
I+ VGD+ + FT+ AG +ES D M+ E + LGI + +F R+
Sbjct: 5 IVHVGDIPVANDKPFTLFAGMNVLESRDLAMQICEHYVKVTDKLGIPYVFKASFDKANRS 64
Query: 67 SPYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFEL 125
S +S++G G E+ +K ++ + +G+ +T+V + V+ D++Q+ A ++ +L
Sbjct: 65 SVHSYRGPGLEEGMKIFQELKETFGVKIITDVHTEAQAQPVADVVDVIQLPAFLARQTDL 124
Query: 126 LKEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDIS 185
++ + + + +K+ + ++ E GN+ VILCERG + +D+
Sbjct: 125 VEAMAKTGAVINVKKPQFMSPGQVGNIVEKFAECGNDKVILCERG--SCHGYDNLVVDML 182
Query: 186 AVPVVKELSH-LPIVVDPSHP-----------AGRRSLVIPLAKAAYAVGADGVLVEVHP 233
V+K+ S+ PI+ D +H GRR + LAKA A G G+ +E HP
Sbjct: 183 GFGVMKQASNGSPIIFDVTHSLQMRDPSGAASGGRREQTVELAKAGLATGIAGLFIEAHP 242
Query: 234 DPENALSDSKQQLTFEDFKILLDELRKL 261
+P+ A D L + + L +++ L
Sbjct: 243 NPDKARCDGPSALPLDKLEPFLAQMKAL 270
>emb|CAA29067.1| (X05552) 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase
[Escherichia coli] >gi|225957|prf||1404365B kdsA gene
[Escherichia coli]
Length = 284
Score = 93.2 bits (228), Expect = 3e-18
Identities = 70/275 (25%), Positives = 133/275 (47%), Gaps = 37/275 (13%)
Query: 15 IIKVGDVKIGEG--FTIMAGPCAIESEDQIMKTAEFLA----ELGIKILRGGAFKP--RT 66
++ +GD+ + F ++ G +ES D M+ E +LGI + +F R+
Sbjct: 5 VVSIGDINVANDLPFVLLGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRS 64
Query: 67 SPYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFEL 125
S +S++G G E+ +K ++ +G+ +T+V + + V+ D++Q+ A ++ +L
Sbjct: 65 SIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDL 124
Query: 126 LKEVGRQ------EKPVLLKRG-MGNTIQELLYSAEYIMSQGNENVILCERGIRTFETST 178
++ + + +KP + G MGN + + GNE VILC+RG +
Sbjct: 125 VEAMAKTGAVINVKKPQFVSPGQMGNIVDKF-------KEGGNEKVILCDRGANFGYDN- 176
Query: 179 RFTLDISAVPVVKELS-HLPIVVDPSHP-----------AGRRSLVIPLAKAAYAVGADG 226
+D+ ++K++S + P++ D +H GRR+ V LA+A AVG G
Sbjct: 177 -LVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAG 235
Query: 227 VLVEVHPDPENALSDSKQQLTFEDFKILLDELRKL 261
+ +E HPDPE+A D L + L +++ +
Sbjct: 236 LFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAI 270
>sp|P17579|KDSA_ECOLI 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|2118275|pir||I83573
3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase
- Escherichia coli >gi|7428344|pir||SYECOL
2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16)
- Escherichia coli >gi|8569593|pdb|1D9E|A Chain A,
Structure Of E. Coli Kdo8p Synthase
>gi|8569594|pdb|1D9E|B Chain B, Structure Of E. Coli
Kdo8p Synthase >gi|8569595|pdb|1D9E|C Chain C, Structure
Of E. Coli Kdo8p Synthase >gi|8569596|pdb|1D9E|D Chain
D, Structure Of E. Coli Kdo8p Synthase
>gi|10835454|pdb|1GG0|A Chain A, Crystal Structure
Analysis Of Kdop Synthase At 3.0 A
>gi|968934|gb|AAC43441.1| (U18555)
3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase
[Escherichia coli] >gi|1651603|dbj|BAA36073.1| (D90756)
3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase
[Escherichia coli] >gi|1651611|dbj|BAA36083.1| (D90757)
3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase
[Escherichia coli] >gi|1787466|gb|AAC74299.1| (AE000219)
2-dehydro-3-deoxyphosphooctulonate aldolase [Escherichia
coli K12]
Length = 284
Score = 92.4 bits (226), Expect = 5e-18
Identities = 70/275 (25%), Positives = 132/275 (47%), Gaps = 37/275 (13%)
Query: 15 IIKVGDVKIGEG--FTIMAGPCAIESEDQIMKTAEFLA----ELGIKILRGGAFKP--RT 66
++ +GD+ + F + G +ES D M+ E +LGI + +F R+
Sbjct: 5 VVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRS 64
Query: 67 SPYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFEL 125
S +S++G G E+ +K ++ +G+ +T+V + + V+ D++Q+ A ++ +L
Sbjct: 65 SIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDL 124
Query: 126 LKEVGRQ------EKPVLLKRG-MGNTIQELLYSAEYIMSQGNENVILCERGIRTFETST 178
++ + + +KP + G MGN + + GNE VILC+RG +
Sbjct: 125 VEAMAKTGAVINVKKPQFVSPGQMGNIVDKF-------KEGGNEKVILCDRGANFGYDN- 176
Query: 179 RFTLDISAVPVVKELS-HLPIVVDPSHP-----------AGRRSLVIPLAKAAYAVGADG 226
+D+ ++K++S + P++ D +H GRR+ V LA+A AVG G
Sbjct: 177 -LVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAG 235
Query: 227 VLVEVHPDPENALSDSKQQLTFEDFKILLDELRKL 261
+ +E HPDPE+A D L + L +++ +
Sbjct: 236 LFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAI 270
>sp|Q9ZN55|KDSA_HELPJ 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|7436650|pir||E71985
3-deoxy-d-manno-octulosonic acid 8-phosphate synthase -
Helicobacter pylori (strain J99)
>gi|4154506|gb|AAD05587.1| (AE001440)
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase
[Helicobacter pylori J99]
Length = 276
Score = 92.1 bits (225), Expect = 6e-18
Identities = 78/264 (29%), Positives = 127/264 (47%), Gaps = 35/264 (13%)
Query: 29 IMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKP------RTSPYSFQGYG-EKALKW 81
++AGPC IES + + A L L FK RTS S++G G EK L+
Sbjct: 13 LIAGPCVIESLENLRSIAIKLQPLANNERLDFYFKASFDKANRTSLESYRGPGLEKGLEM 72
Query: 82 MRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLKRG 141
++ DE+G +T+V ++ + +K ADILQI A + +L+ EV + V +K+G
Sbjct: 73 LQTIKDEFGYKILTDVHESYQASVAAKVADILQIPAFLCRQTDLIVEVSQTNAIVNIKKG 132
Query: 142 MGNTIQELLYSA--------EYIMSQGNENVI-----LCERGIRTFETSTRFTLDISAVP 188
+++ YS I S E + LCERG +F +D+ ++
Sbjct: 133 QFMNPKDMQYSVLKALKTRDSSIQSPTYETALKNGVWLCERG-SSFGYG-NLVVDMRSLK 190
Query: 189 VVKELSHLPIVVDPSH-----------PAGRRSLVIPLAKAAYAVGADGVLVEVHPDPEN 237
+++E + P++ D +H +G S L +AA AVG DG+ E H DP+N
Sbjct: 191 IMREFA--PVIFDATHSVQMPGGANGKSSGDSSFPPILPRAAAAVGIDGLFAETHIDPKN 248
Query: 238 ALSDSKQQLTFEDFKILLDELRKL 261
ALSD L ++ + L+ ++ K+
Sbjct: 249 ALSDGANMLKPDELEHLVTDMLKI 272
>pir||B81100 2-dehydro-3-deoxyphosphooctonate aldolase NMB1283 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7226523|gb|AAF41659.1| (AE002477)
2-dehydro-3-deoxyphosphooctonate aldolase [Neisseria
meningitidis MC58]
Length = 280
Score = 88.2 bits (215), Expect = 9e-17
Identities = 75/272 (27%), Positives = 128/272 (46%), Gaps = 29/272 (10%)
Query: 16 IKVGDVKIGEG--FTIMAGPCAIESEDQIMKTA----EFLAELGIKILRGGAFKP--RTS 67
IK+ D+ +G F + G +ES D ++T E +LGI + +F R+S
Sbjct: 3 IKINDITLGNNSPFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSS 62
Query: 68 PYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELL 126
+S++G G E+ LK K E+G+ +T+V + + V++ D++Q+ A ++ +L+
Sbjct: 63 IHSYRGVGLEEGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLV 122
Query: 127 KEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISA 186
+ + V +K+ + ++ E GN +ILCERG + +D+
Sbjct: 123 VAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERG--SSFGYDNLVVDMLG 180
Query: 187 VPVVKEL-SHLPIVVDPSHP-----------AGRRSLVIPLAKAAYAVGADGVLVEVHPD 234
V+K+ +LP++ D +H GRR+ + LA A A G+ +E HPD
Sbjct: 181 FGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHPD 240
Query: 235 PENALSDSKQQL---TFEDFKI---LLDELRK 260
P+ A D L EDF I LD+L K
Sbjct: 241 PKLAKCDGPSALPLHLLEDFLIRIKALDDLIK 272
>sp|P45251|KDSA_HAEIN 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|1073776|pir||G64129
2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16)
- Haemophilus influenzae (strain Rd KW20)
>gi|1574401|gb|AAC23206.1| (U32830)
2-dehydro-3-deoxyphosphooctonate aldolase (kdsA)
[Haemophilus influenzae Rd]
Length = 284
Score = 87.8 bits (214), Expect = 1e-16
Identities = 66/268 (24%), Positives = 129/268 (47%), Gaps = 23/268 (8%)
Query: 15 IIKVGDVKIGEG--FTIMAGPCAIESEDQIMKTAEFLAELGIKILRGGAFKP------RT 66
I+K+G++ + F + G +ES D M+ E ++ K+ FK R+
Sbjct: 5 IVKIGNIDVANDKPFVLFGGMNVLESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRS 64
Query: 67 SPYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFEL 125
S +S++G G E+ LK ++ D +G+ +T+V + + V+ DI+Q+ A ++ +L
Sbjct: 65 SIHSYRGPGMEEGLKIFQELKDTFGVKIITDVHEIYQCQPVADVVDIIQLPAFLARQTDL 124
Query: 126 LKEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDIS 185
++ + + + +K+ + ++ E I GN+ +ILC+RG T +D+
Sbjct: 125 VEAMAKTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRG--TNFGYDNLIVDML 182
Query: 186 AVPVVKELSH-LPIVVDPSH-----------PAGRRSLVIPLAKAAYAVGADGVLVEVHP 233
V+K+ S P++ D +H +GRR+ V LA++ AVG G+ +E HP
Sbjct: 183 GFSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEAHP 242
Query: 234 DPENALSDSKQQLTFEDFKILLDELRKL 261
+P A D L + + +++ +
Sbjct: 243 NPNQAKCDGPSALPLSALEGFVSQMKAI 270
>sp|P77849|KDSA_CHLTR 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|7436654|pir||A71487 probable Kdo
synthetase - Chlamydia trachomatis (serotype D, strain
UW3/Cx) >gi|3329105|gb|AAC68250.1| (AE001336) KDO
Synthetase [Chlamydia trachomatis]
Length = 269
Score = 86.6 bits (211), Expect = 3e-16
Identities = 66/247 (26%), Positives = 119/247 (47%), Gaps = 24/247 (9%)
Query: 29 IMAGPCAIESEDQIMKTAEFLAELGIK-------ILRGGAFKP-RTSPYSFQGYGEK-AL 79
++AGPC IE ++ + +TA L E+ I + K R+S ++++G G K L
Sbjct: 9 LIAGPCVIE-DNSVFETARRLKEIVAPYASSVHWIFKSSYDKANRSSVHNYRGPGLKLGL 67
Query: 80 KWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLK 139
+ + K +E + +T+V +K DI+Q+ A + +LL G + V +K
Sbjct: 68 QTLAKIKEELDVEILTDVHSPDEAREAAKVCDIIQVPAFLCRQTDLLVTAGETQAIVNIK 127
Query: 140 RGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVPVVKELSHLPIV 199
+G + E+ + ++S GN +IL ERG + D+ ++ V++ P+V
Sbjct: 128 KGQFLSPWEMQGPIDKVLSTGNNKIILTERGCSFGYNN--LVSDMRSIEVLRRFG-FPVV 184
Query: 200 VDPSHPA-----------GRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTF 248
D +H G+ + L ++A A G G+ +E HP+P +ALSD+ L+
Sbjct: 185 FDGTHSVQLPGALHSQSGGQTEFIPVLTRSAIAAGVQGLFIETHPNPSSALSDAASMLSL 244
Query: 249 EDFKILL 255
+D + LL
Sbjct: 245 KDLERLL 251
>pir||G81840 2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16) NMA1493
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7380141|emb|CAB84726.1| (AL162756)
2-dehydro-deoxyphosphooctonate aldolase [Neisseria
meningitidis Z2491]
Length = 280
Score = 85.8 bits (209), Expect = 5e-16
Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 29/272 (10%)
Query: 16 IKVGDVKIGEG--FTIMAGPCAIESEDQIMKTA----EFLAELGIKILRGGAFKP--RTS 67
IK+ D+ +G F + G +ES D ++T E +LGI + +F R+S
Sbjct: 3 IKINDITLGNNLPFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSS 62
Query: 68 PYSFQGYG-EKALKWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELL 126
+S++G G E+ LK K E+G+ +T+V + + V++ D++Q+ A ++ +L+
Sbjct: 63 IHSYRGVGLEEGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEVCDVIQLPAFLARQTDLV 122
Query: 127 KEVGRQEKPVLLKRGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISA 186
+ + +K+ + ++ E N +ILCERG + +DI
Sbjct: 123 AAMAETGNVINIKKPQFLSPSQMKNIVEKFHEADNGKLILCERG--SSFGYDNLVVDILG 180
Query: 187 VPVVKEL-SHLPIVVDPSHP-----------AGRRSLVIPLAKAAYAVGADGVLVEVHPD 234
V+K+ +LP++ D +H GRR+ + LA A A G+ +E HPD
Sbjct: 181 FGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHPD 240
Query: 235 PENALSDSKQQL---TFEDFKI---LLDELRK 260
P+ A D L EDF I LD+L K
Sbjct: 241 PKLAKCDGPSALPLHLLEDFLIRIKALDDLIK 272
>gb|AAB17556.1| (U72493) 3-deoxy-D-manno-octulosonate 8-phosphate synthetase
[Chlamydia trachomatis]
Length = 269
Score = 83.9 bits (204), Expect = 2e-15
Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 30/250 (12%)
Query: 29 IMAGPCAIESEDQIMKTAEFLAEL------GIKILRGGAFKP--RTSPYSFQGYGEK-AL 79
++AGPC IE ++ + +TA L E+ + + ++ R+S ++++G G + L
Sbjct: 9 LIAGPCVIE-DNSVFETARRLKEIVGPYASSVHWIFKSSYDKANRSSVHNYRGPGLRLGL 67
Query: 80 KWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLK 139
+ + K +E + +T+V +K DI+Q+ A + +LL G + V +K
Sbjct: 68 QTLAKIKEELDVEILTDVHSPDEAREAAKVCDIIQVPAFLCRQTDLLVTAGETQAIVNIK 127
Query: 140 RGMGNTIQELLYSAEYIMSQGNENVILCERG-----------IRTFETSTRFTLDISAVP 188
+G + E+ + ++S GN +IL ERG +R+ E RF P
Sbjct: 128 KGQFLSPWEMQGPIDKVLSTGNNKIILTERGCSFGYNNLVSDMRSIEVLRRF-----GFP 182
Query: 189 VVKELSH---LPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQ 245
VV + +H LP + S G+ + L ++A A G G+ E HP+P +ALSD+
Sbjct: 183 VVSDGTHSVQLPGALH-SQSGGQTEFIPVLTRSAIAAGVQGLFKETHPNPSSALSDAASM 241
Query: 246 LTFEDFKILL 255
L+ +D + LL
Sbjct: 242 LSLKDLERLL 251
>pir||E81747 2-dehydro-3-deoxyphosphooctonate aldolase TC0025 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190065|gb|AAF38916.1| (AE002271)
2-dehydro-3-deoxyphosphooctonate aldolase [Chlamydia
muridarum]
Length = 269
Score = 83.5 bits (203), Expect = 2e-15
Identities = 69/250 (27%), Positives = 120/250 (47%), Gaps = 30/250 (12%)
Query: 29 IMAGPCAIESEDQIMKTAEFLAELGIK-------ILRGGAFKP-RTSPYSFQGYGEK-AL 79
++AGPC IE ++ + +TA L E+ I + K R+S +++G G K L
Sbjct: 9 LIAGPCVIE-DNSVFETARRLKEIVAPYSSSVHWIFKSSYDKANRSSLQNYRGPGLKLGL 67
Query: 80 KWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLK 139
+ + K + + + +T+V +K DI+Q+ A + +LL G + V +K
Sbjct: 68 QTLAKIKETFDVEILTDVHSPDEAREAAKVCDIIQVPAFLCRQTDLLVTAGETQAIVNIK 127
Query: 140 RGMGNTIQELLYSAEYIMSQGNENVILCERG-----------IRTFETSTRFTLDISAVP 188
+G + E+ + ++S GN +IL ERG +R+ E RF P
Sbjct: 128 KGQFLSPWEMQGPIDKVLSTGNNKIILTERGCSFGYNNLVSDMRSIEVLRRF-----GFP 182
Query: 189 VVKELSH---LPIVVDPSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQ 245
V+ + +H LP + S G+ + L ++A A G G+ +E HP+P +ALSD+
Sbjct: 183 VIFDGTHSIQLPGALQ-SQSGGQTEFIPVLTRSAIAAGVHGLFIETHPNPASALSDAASM 241
Query: 246 LTFEDFKILL 255
L+ +D + LL
Sbjct: 242 LSLKDLERLL 251
>sp|Q46225|KDSA_CHLPS 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|1359596|emb|CAA90622.1| (Z50747)
3-deoxy-d-manno-octulosonic acid 8-phosphate synthetase
[Chlamydophila psittaci]
Length = 269
Score = 83.1 bits (202), Expect = 3e-15
Identities = 63/247 (25%), Positives = 115/247 (46%), Gaps = 23/247 (9%)
Query: 29 IMAGPCAIESEDQIMKTAEFLAELGIK-------ILRGGAFKP-RTSPYSFQGYG-EKAL 79
++AGPC IE E+ ++ A + E+ I + K R+S S++G G ++ L
Sbjct: 8 LIAGPCVIEEEETTLEIASKIQEIVAPYTDHIHWIFKSSYDKANRSSINSYRGPGLQEGL 67
Query: 80 KWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLK 139
+ + K +G+ +T+V ++ DILQI A + +LL + +K
Sbjct: 68 RILSKVKQTFGVEILTDVHSPEEARAAAEVCDILQIPAFLCRQTDLLVAAAETHAVINIK 127
Query: 140 RGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVPVVKELSHLPIV 199
+G + ++ + ++S GN +IL ERG + D+ ++ V+ ++ P+V
Sbjct: 128 KGQFLSPWDMQGPVDKVLSTGNSKIILTERGCSFGYNN--LVSDMRSIAVLSKMG-FPVV 184
Query: 200 VD-----------PSHPAGRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTF 248
D +H G+ + L +AA A GA G+ +E H +P A SD+ L+
Sbjct: 185 FDGTHSVQLPGGLKTHSGGQTEFIPTLTRAALAAGAHGLFIETHMNPAIAKSDAASMLSL 244
Query: 249 EDFKILL 255
+ F+ LL
Sbjct: 245 KTFEALL 251
>sp|Q9Z7I4|KDSA_CHLPN 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
(PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE)
(3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE
SYNTHETASE) (KDO-8-PHOSPHATE SYNTHETASE) (KDO 8-P
SYNTHASE) >gi|7436653|pir||A72044 kdo synthetase -
Chlamydophila pneumoniae (strain CWL029)
>gi|4377025|gb|AAD18860.1| (AE001653) KDO Synthetase
[Chlamydophila pneumoniae CWL029]
Length = 269
Score = 81.1 bits (197), Expect = 1e-14
Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 23/247 (9%)
Query: 29 IMAGPCAIESEDQIMKTA----EFLAELGIKI---LRGGAFKP-RTSPYSFQGYG-EKAL 79
++AGPC IE ED ++ A LA +I + K R+S SF+G G + L
Sbjct: 8 LIAGPCVIEGEDITLEIAGKLQSILAPYSDRIQWFFKSSYDKANRSSLNSFRGPGLTEGL 67
Query: 80 KWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLK 139
+ + K + +G+ +T+V + ++ +ILQ+ A + +LL V LK
Sbjct: 68 RILAKVKETFGVGILTDVHTPQDAYAAAEVCNILQVPAFLCRQTDLLVATAETGAIVNLK 127
Query: 140 RGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVPVVKELSHLPIV 199
+G + ++ ++S GN ++L ERG + D+ ++PV+ S P++
Sbjct: 128 KGQFLSPWDMEGPINKVLSTGNNKILLTERGCSFGYNN--LVSDMRSIPVLSR-SGFPVI 184
Query: 200 VDPSHPA-----------GRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTF 248
D +H G V L++AA A GA G+ +E H +P+ A SD+ L+
Sbjct: 185 FDATHSVQLPGALSTESGGLTEFVPTLSRAALAAGAHGLFIETHTNPKIAKSDAASMLSL 244
Query: 249 EDFKILL 255
E+F LL
Sbjct: 245 EEFAALL 251
>pir||E81621 2-dehydro-3-deoxyphophooctonate aldolase CP0025 [imported] -
Chlamydophila pneumoniae (strain AR39)
>gi|7188964|gb|AAF37920.1| (AE002166)
2-dehydro-3-deoxyphophooctonate aldolase [Chlamydophila
pneumoniae AR39]
Length = 271
Score = 81.1 bits (197), Expect = 1e-14
Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 23/247 (9%)
Query: 29 IMAGPCAIESEDQIMKTA----EFLAELGIKI---LRGGAFKP-RTSPYSFQGYG-EKAL 79
++AGPC IE ED ++ A LA +I + K R+S SF+G G + L
Sbjct: 10 LIAGPCVIEGEDITLEIAGKLQSILAPYSDRIQWFFKSSYDKANRSSLNSFRGPGLTEGL 69
Query: 80 KWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLK 139
+ + K + +G+ +T+V + ++ +ILQ+ A + +LL V LK
Sbjct: 70 RILAKVKETFGVGILTDVHTPQDAYAAAEVCNILQVPAFLCRQTDLLVATAETGAIVNLK 129
Query: 140 RGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVPVVKELSHLPIV 199
+G + ++ ++S GN ++L ERG + D+ ++PV+ S P++
Sbjct: 130 KGQFLSPWDMEGPINKVLSTGNNKILLTERGCSFGYNN--LVSDMRSIPVLSR-SGFPVI 186
Query: 200 VDPSHPA-----------GRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTF 248
D +H G V L++AA A GA G+ +E H +P+ A SD+ L+
Sbjct: 187 FDATHSVQLPGALSTESGGLTEFVPTLSRAALAAGAHGLFIETHTNPKIAKSDAASMLSL 246
Query: 249 EDFKILL 255
E+F LL
Sbjct: 247 EEFAALL 253
>dbj|BAA98928.1| (AP002547) KDO synthetase [Chlamydophila pneumoniae J138]
Length = 269
Score = 81.1 bits (197), Expect = 1e-14
Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 23/247 (9%)
Query: 29 IMAGPCAIESEDQIMKTA----EFLAELGIKI---LRGGAFKP-RTSPYSFQGYG-EKAL 79
++AGPC IE ED ++ A LA +I + K R+S SF+G G + L
Sbjct: 8 LIAGPCVIEGEDITLEIAGKLQSILAPYSDRIQWFFKSSYDKANRSSLNSFRGPGLTEGL 67
Query: 80 KWMRKAADEYGLVTVTEVMDTRHVELVSKYADILQIGARNSQNFELLKEVGRQEKPVLLK 139
+ + K + +G+ +T+V + ++ +ILQ+ A + +LL V LK
Sbjct: 68 RILAKVKETFGVGILTDVHTPQDAYAAAEVCNILQVPAFLCRQTDLLVATAETGAIVHLK 127
Query: 140 RGMGNTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVPVVKELSHLPIV 199
+G + ++ ++S GN ++L ERG + D+ ++PV+ S P++
Sbjct: 128 KGQFLSPWDMEGPINKVLSTGNNKILLTERGCSFGYNN--LVSDMRSIPVLSR-SGFPVI 184
Query: 200 VDPSHPA-----------GRRSLVIPLAKAAYAVGADGVLVEVHPDPENALSDSKQQLTF 248
D +H G V L++AA A GA G+ +E H +P+ A SD+ L+
Sbjct: 185 FDATHSVQLPGALSTESGGLTEFVPTLSRAALAAGAHGLFIETHTNPKIAKSDAASMLSL 244
Query: 249 EDFKILL 255
E+F LL
Sbjct: 245 EEFAALL 251
>pir||E81054 chorismate mutase-related protein NMB1692 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226946|gb|AAF42040.1| (AE002519) chorismate
mutase-related protein [Neisseria meningitidis MC58]
Length = 297
Score = 74.1 bits (179), Expect = 2e-12
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 85 AADEYGLVTVTEVMDTRHVEL-VSKYADILQIGARNSQNFELLKEVGRQEKPVLLKRGMG 143
+A + G + V + RHVE ++ ADIL +G + +L E G P++L +
Sbjct: 144 SAHDAGKPVLVRVRNVRHVEAALNAGADILYLGGGLMSDLAVLNEAGNLNIPLVLCKDKH 203
Query: 144 NTIQELLYSAEYIMSQGNENVILCERGIRTFETSTRFTLDISAVPVVKELSHLPIVVDPS 203
++ ++ L +AEY++S+GN ++IL E G+ + LD+ ++ V+++SHLP++ + +
Sbjct: 204 HSAEDWLNAAEYVVSRGNRHLILGESGVLNHTKGHPYRLDVESIVKVRQISHLPVIANIT 263
Query: 204 HPAGR---RSLVIPLAKAAYAVGADGVLVE 230
R + ++ LAKAA A G G E
Sbjct: 264 GLWNRDMPQEILYGLAKAAGACGIVGTCFE 293
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95051602
Number of Sequences: 2977
Number of extensions: 3798376
Number of successful extensions: 11123
Number of sequences better than 1.0e-10: 41
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 11050
Number of HSP's gapped (non-prelim): 43
length of query: 265
length of database: 189,106,746
effective HSP length: 57
effective length of query: 208
effective length of database: 154,992,987
effective search space: 32238541296
effective search space used: 32238541296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)