BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB0302 (tmpC-like) DE:MEMBRANE LIPOPROTEIN (TMPC)
(404 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75161 membrane lipoprotein (tmpc) PAB0302 - Pyrococcus aby... 818 0.0
sp|O59403|YH14_PYRHO HYPOTHETICAL LIPOPROTEIN PH1714 PRECURSOR >... 760 0.0
pir||A72494 hypothetical protein APE2592 - Aeropyrum pernix (str... 411 e-114
pir||F72418 basic membrane protein - Thermotoga maritima (strain... 161 2e-38
emb|CAC14304.1| (AJ276209) putative substrate binding lipoprotei... 159 4e-38
gb|AAG19338.1| (AE005028) Vng0903c [Halobacterium sp. NRC-1] 146 5e-34
sp|O05252|YUFN_BACSU HYPOTHETICAL LIPOPROTEIN YUFN PRECURSOR >gi... 127 3e-28
gb|AAG19258.1| (AE005021) ABC transporter (lipoprotein); YufN [H... 123 4e-27
gb|AAC44712.1|AAC44712 (U49938) membrane lipoprotein BmpA [Borre... 110 2e-23
gb|AAG00584.1|AF288609_3 (AF288609) BmpA [Borrelia burgdorferi] 110 2e-23
sp|Q45010|BMPA_BORBU BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNOD... 109 4e-23
gb|AAD21046.1| (AF116774) immunodominant antigen P39 [Borrelia b... 109 6e-23
emb|CAA65879.1| (X97240) membrane protein A [Borrelia burgdorferi] 108 2e-22
emb|CAA57235.1| (X81515) bmpA(p39,ORF1) [Borrelia burgdorferi] 106 4e-22
emb|CAA65874.1| (X97235) membrane protein A [Borrelia burgdorferi] 106 5e-22
sp|P29724|TMPC_TREPA MEMBRANE LIPOPROTEIN TMPC PRECURSOR (MEMBRA... 104 1e-21
sp|O31280|BMPA_BORAF BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNOD... 104 1e-21
emb|CAA57236.1| (X81516) bmpA(p39,ORF1) [Borrelia burgdorferi] 104 2e-21
sp|Q45011|BMPB_BORBU BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2120... 104 2e-21
emb|CAA65876.1| (X97237) membrane protein A [Borrelia afzelii] 103 3e-21
pir||H75318 membrane lipoprotein - Deinococcus radiodurans (stra... 103 3e-21
emb|CAA65880.1| (X97241) membrane protein A [Borrelia afzelii] 102 5e-21
emb|CAA57237.1| (X81517) bmpB(p39,ORF2) [Borrelia burgdorferi] 102 5e-21
sp|Q44743|BMPD_BORBU BASIC MEMBRANE PROTEIN D PRECURSOR >gi|1262... 102 7e-21
pir||E70147 basic membrane lipoprotein B (bmpB) - Lyme disease s... 102 7e-21
pir||H70147 basic membrane protein D (bmpD) homolog - Lyme disea... 102 7e-21
pir||A43595 membrane protein C precursor - Treponema pallidum su... 102 9e-21
emb|CAA65878.1| (X97239) membrane protein A [Borrelia afzelii] 102 9e-21
sp|O31357|BMPA_BORGA BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNOD... 101 1e-20
emb|CAA65877.1| (X97238) membrane protein A [Borrelia garinii] 100 3e-20
sp|O31362|BMPB_BORGA BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2598... 100 4e-20
gb|AAG00582.1|AF288609_1 (AF288609) BmpD [Borrelia burgdorferi] 100 5e-20
sp|O31284|BMPB_BORAF BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2598... 92 8e-18
sp|Q48754|TCSA_LISMO CD4+ T CELL-STIMULATING ANTIGEN PRECURSOR >... 90 5e-17
emb|CAA65881.1| (X97242) membrane protein A [Borrelia garinii] 89 1e-16
emb|CAA65875.1| (X97236) membrane protein A [Borrelia garinii] 83 4e-15
emb|CAA65882.1| (X97243) membrane protein A [Borrelia garinii] 82 9e-15
pir||I40243 bmpC protein - Lyme disease spirochete >gi|1753224|g... 70 4e-11
sp|O50169|BMPC_BORBU BASIC MEMBRANE PROTEIN C PRECURSOR >gi|7447... 69 9e-11
>pir||G75161 membrane lipoprotein (tmpc) PAB0302 - Pyrococcus abyssi (strain
Orsay) >gi|5457884|emb|CAB49374.1| (AJ248284) MEMBRANE
LIPOPROTEIN (TMPC) [Pyrococcus abyssi]
Length = 404
Score = 818 bits (2089), Expect = 0.0
Identities = 404/404 (100%), Positives = 404/404 (100%)
Query: 1 MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGA 60
MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGA
Sbjct: 1 MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGA 60
Query: 61 ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK 120
ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK
Sbjct: 61 ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK 120
Query: 121 FALIDSTTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH 180
FALIDSTTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH
Sbjct: 121 FALIDSTTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH 180
Query: 181 IGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM 240
IGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM
Sbjct: 181 IGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM 240
Query: 241 FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI 300
FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI
Sbjct: 241 FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI 300
Query: 301 ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVH 360
ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVH
Sbjct: 301 ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVH 360
Query: 361 ELEEKIKSGEIVFKTPKTHEEYEQIIRELEKGNLNAALEKGSVE 404
ELEEKIKSGEIVFKTPKTHEEYEQIIRELEKGNLNAALEKGSVE
Sbjct: 361 ELEEKIKSGEIVFKTPKTHEEYEQIIRELEKGNLNAALEKGSVE 404
>sp|O59403|YH14_PYRHO HYPOTHETICAL LIPOPROTEIN PH1714 PRECURSOR >gi|7519252|pir||E71179
hypothetical protein PH1714 - Pyrococcus horikoshii
>gi|3258145|dbj|BAA30828.1| (AP000007) 405aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 405
Score = 760 bits (1941), Expect = 0.0
Identities = 373/404 (92%), Positives = 391/404 (96%), Gaps = 2/404 (0%)
Query: 3 KLGLALSIMGLLLVSIVAGCIGGGTETKTEA--KKVKVAILFDVGGRGDLSFNDMAYLGA 60
K LALSI+GL+L S+VAGCIGGGT+T+T+ K +KVAILFDVGGRGDLSFNDMAYLGA
Sbjct: 2 KAKLALSIIGLVLASLVAGCIGGGTQTQTQTQGKSIKVAILFDVGGRGDLSFNDMAYLGA 61
Query: 61 ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK 120
ERAKKELGV+IEYMTPKSKEDM PLLEQLA+SKEYDLLVLVGFLWT+PLNEVADKYPDQK
Sbjct: 62 ERAKKELGVKIEYMTPKSKEDMVPLLEQLAKSKEYDLLVLVGFLWTTPLNEVADKYPDQK 121
Query: 121 FALIDSTTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH 180
FALIDSTTGKVR NEVDILFREQE AALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH
Sbjct: 122 FALIDSTTGKVRPNEVDILFREQEVAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH 181
Query: 181 IGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM 240
IGYLFGAKYFEKKTGK VKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM
Sbjct: 182 IGYLFGAKYFEKKTGKHVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM 241
Query: 241 FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI 300
FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI
Sbjct: 242 FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI 301
Query: 301 ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVH 360
ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVV+IVK+QREKYIKPYVW+IV+
Sbjct: 302 ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVEIVKQQREKYIKPYVWEIVN 361
Query: 361 ELEEKIKSGEIVFKTPKTHEEYEQIIRELEKGNLNAALEKGSVE 404
EL EKIK+GEIVFKTPK+H+EYEQII ELEKGNLNAAL+KGSVE
Sbjct: 362 ELAEKIKNGEIVFKTPKSHDEYEQIINELEKGNLNAALKKGSVE 405
>pir||A72494 hypothetical protein APE2592 - Aeropyrum pernix (strain K1)
>gi|5106298|dbj|BAA81609.1| (AP000064) 470aa long
hypothetical protein [Aeropyrum pernix]
Length = 470
Score = 411 bits (1045), Expect = e-114
Identities = 208/377 (55%), Positives = 278/377 (73%), Gaps = 7/377 (1%)
Query: 29 TKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQ 88
T +A+ + V +LFDVGGRGDLSFNDMA LGA+RA +ELGV++ + TP+S M+ +L+
Sbjct: 94 TTEQARPISVLVLFDVGGRGDLSFNDMAALGADRAAEELGVDVVFQTPQSLAVMESVLDA 153
Query: 89 LAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVRENEVDILFREQEAAAL 148
++S EYDL+VLVGFLW PL +VA +YP+QK+ALID+ T + +N LFREQE A+L
Sbjct: 154 ASRSGEYDLIVLVGFLWQEPLEKVAPRYPEQKYALIDAATRERYDNVASYLFREQEVASL 213
Query: 149 MGVIASGMAYELGGDT-----IGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQ 203
+G+IA+ +A + T GAVAGMDIPPLW+FHIGYL+G +Y+ + G V+++W
Sbjct: 214 VGIIAADIANNISKATGEEAKAGAVAGMDIPPLWRFHIGYLYGVQYYNQAMGTDVEMVWT 273
Query: 204 YTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDAS 263
YTG F D +G TA Q+LQQG +V YG+AGLTHVGMF+AVK+ +G A ++GQDAS
Sbjct: 274 YTGRFDDPTLGKTTAEQMLQQGVRVFYGVAGLTHVGMFNAVKEAAARG-VIAFSIGQDAS 332
Query: 264 QEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGIITLGLKENGVGYWDLDGVKQFAE 323
QEWY P+ I ISG KRVDVAVY AIK VV+G ++GGI++LGLKE G+G D + ++ FAE
Sbjct: 333 QEWYDPQTIIISGLKRVDVAVYTAIKDVVEGRFRGGIVSLGLKEGGLGLSDEEIIRYFAE 392
Query: 324 FAKEAGKLKD-MTPDEVVQIVKEQREKYIKPYVWDIVHELEEKIKSGEIVFKTPKTHEEY 382
A E G+L + +TP++VV+IV QREK+I W +V EL++KI SGEI F TP+ H+ Y
Sbjct: 393 IAAETGQLPEGLTPEKVVEIVMSQREKWISNDGWRLVEELKQKIISGEIKFVTPQDHDTY 452
Query: 383 EQIIRELEKGNLNAALE 399
+ II EL+ GNL AALE
Sbjct: 453 DSIIEELKAGNLEAALE 469
>pir||F72418 basic membrane protein - Thermotoga maritima (strain MSB8)
>gi|4980592|gb|AAD35196.1|AE001696_10 (AE001696) basic
membrane protein [Thermotoga maritima]
Length = 359
Score = 161 bits (402), Expect = 2e-38
Identities = 103/294 (35%), Positives = 156/294 (53%), Gaps = 25/294 (8%)
Query: 37 KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
KV ++ DVGG GD SFND + G ++A +ELG+E + + + D P L + A+ E D
Sbjct: 20 KVIMVTDVGGLGDKSFNDGTWAGIKQAAEELGIEAKVIQSYEQSDYIPNLSKAAE--EAD 77
Query: 97 LLVLVGFLWTSPLNEVADKYPDQKFALIDSTT--GKVRENEVDILFREQEAAALMGVIAS 154
L+ VGF+ T+ L +VA +YPD F ID T G++ N + F+EQEAA L+G +A+
Sbjct: 78 LVFAVGFMMTNDLFKVAKQYPDTYFVGIDITPPEGQILPNVLTFTFKEQEAAFLVGYVAA 137
Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
M +G V G+ IPP+ +F GY G K + K VK+L YT F D + G
Sbjct: 138 AMTKT---GMVGFVGGIPIPPVERFRYGYEAGIKTYSVLHKKNVKILRGYTQDFEDPKKG 194
Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKD-----------------WNEQGRGKALA 257
+ AM +GA +++ +G G+ +A ++ + G+G A
Sbjct: 195 KDLAMSQFAEGADIVFHASGACGNGVIEAAREKFSALAGSDKLVDLIDYYTTNGKG-FFA 253
Query: 258 MGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGIITLGLKENGVG 311
+G D Q++ AP + S KRVDVA Y + +GT++GG LG+ E+ VG
Sbjct: 254 IGVDMDQDYMAPGAVLTSAMKRVDVASYYGVVWAYEGTFEGGHRVLGISEDAVG 307
>emb|CAC14304.1| (AJ276209) putative substrate binding lipoprotein precursor of an
ABC transporter [Clostridium sticklandii]
Length = 349
Score = 159 bits (399), Expect = 4e-38
Identities = 113/361 (31%), Positives = 177/361 (48%), Gaps = 39/361 (10%)
Query: 1 MRKLGLALSIMGLLLVSIVAGCIGGGTET--------KTEAKKVKVAILFDVGGRGDLSF 52
M+K AL + ++ + +AGC ET +T A+ +K++++ DVGG D SF
Sbjct: 1 MKKRITALFLASIMGIMTLAGCSSAPAETPAEEPAAEETAAESLKISMVTDVGGVKDQSF 60
Query: 53 NDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEV 112
N A+ G E+AK +LG+EI Y+ K D +P LE L E DL+ VGF +
Sbjct: 61 NQSAWEGLEKAKADLGIEIGYIESKQDADYEPNLETLVDG-ENDLIWGVGFKMADAILAA 119
Query: 113 ADKYPDQKFALIDST-TGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGM 171
A YP+QK+A+ID+ +N + +LF+E+E + L+G+IA M + IG + GM
Sbjct: 120 AGNYPEQKYAIIDNDYADATPDNVLGVLFKEEEPSYLVGLIAGKMTQ---SNKIGFIGGM 176
Query: 172 DIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYG 231
D+P + +F G+L G K V Q+ F D G A Q+ G +++
Sbjct: 177 DVPVINRFRFGFLAGVKAANPDAVVDV----QFVNAFNDPAKGKAVANQMYASGVDIIFH 232
Query: 232 LAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMV 291
AG + G +A K+ N+ +G D Q AP + S KRVD A+++ K +
Sbjct: 233 AAGDSGNGAIEAAKEQNK------WVIGVDRDQNDLAPDNVITSAVKRVDNAMFNVAKEL 286
Query: 292 VDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKY 350
DG + GG I GL E GV + A K P ++++ V+ +++K
Sbjct: 287 KDGNFAGGTTIVFGLAEGGV------------DIAPTTSK---NVPADILEFVEAEKQKI 331
Query: 351 I 351
I
Sbjct: 332 I 332
>gb|AAG19338.1| (AE005028) Vng0903c [Halobacterium sp. NRC-1]
Length = 349
Score = 146 bits (364), Expect = 5e-34
Identities = 102/313 (32%), Positives = 150/313 (47%), Gaps = 30/313 (9%)
Query: 12 GLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
G + S+VAGC GG T KV ++ GG GD SFND A G ERAKKEL +
Sbjct: 15 GTVGASLVAGCSSGGGGGDT----TKVGTVYGTGGLGDGSFNDQAKQGLERAKKELDITY 70
Query: 72 EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKV 131
E P++ + +Q AQ +DL+ VG+ L A +PDQ++AL+D T
Sbjct: 71 EESQPENNSEFATDQQQYAQDGSFDLVNCVGYAQKDALATNAADFPDQRWALVDETVD-- 128
Query: 132 RENEVDILFREQEAAALMGVIASGM----------AYELGGDTIGAVAGMDIPPLWKFHI 181
++N FRE+ + L+G +A + A T+G V G++ P + KF
Sbjct: 129 QDNVASYRFREEAGSYLVGELAGLLTQREFSAGSGATNPDAATVGFVGGIETPLIKKFEA 188
Query: 182 GYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMF 241
G+ G + + +L Y G+F D G + A + GA ++Y + T G+F
Sbjct: 189 GFTAGV----NDVSEDIDVLSSYVGSFNDPSAGQSQARSMFNSGADIIYHASAATGDGVF 244
Query: 242 DAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI---SGAKRVDVAVYDAIKMVVDGTWKG 298
A +D A+G D Q + + S KRVD AVY+AI V +G + G
Sbjct: 245 RAAQDIGR------FAIGVDRDQSVTKSDFADVVLASMVKRVDTAVYNAINAVANGNFAG 298
Query: 299 GIIT-LGLKENGV 310
G T LGL+++GV
Sbjct: 299 GETTRLGLEDDGV 311
>sp|O05252|YUFN_BACSU HYPOTHETICAL LIPOPROTEIN YUFN PRECURSOR >gi|7429430|pir||C70009 ABC
transporter (lipoprotein) homolog yufN - Bacillus
subtilis >gi|1934811|emb|CAB07936.1| (Z93937) unknown
[Bacillus subtilis] >gi|2635650|emb|CAB15143.1| (Z99120)
similar to ABC transporter (lipoprotein) [Bacillus
subtilis]
Length = 350
Score = 127 bits (315), Expect = 3e-28
Identities = 105/316 (33%), Positives = 149/316 (46%), Gaps = 34/316 (10%)
Query: 18 IVAGCIGG--GTETKTEAK-----KVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVE 70
I AG I G G K+ K VA++ DVGG D SFN A+ G + KE G++
Sbjct: 5 IAAGTILGACGNSEKSSGSGEGKNKFSVAMVTDVGGVDDKSFNQSAWEGIQAFGKENGLK 64
Query: 71 -----IEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALID 125
+Y+ KS D L +LA+ + +DL+ VG+L ++E+AD+ + FA+ID
Sbjct: 65 KGKNGYDYLQSKSDADYTTNLNKLAR-ENFDLIYGVGYLMEDSISEIADQRKNTNFAIID 123
Query: 126 STTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLF 185
+ K +N I F+EQE + L+GV A A IG V GM+ + KF +G+
Sbjct: 124 AVVDK--DNVASITFKEQEGSFLVGVAA---ALSSKSGKIGFVGGMESELIKKFEVGFRA 178
Query: 186 GAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVK 245
G + K VK Y G F VG TA + + G V+Y AG T G+F K
Sbjct: 179 GVQAVNPKAVVEVK----YAGGFDKADVGKATAESMYKSGVDVIYHSAGATGTGVFTEAK 234
Query: 246 DW-NEQGRGKALAMGQDASQEWYAPKYIP--------ISGAKRVDVAVYDAIKMVVDGTW 296
+ E + +G D Q YA + S K+VD V D K DG +
Sbjct: 235 NLKKEDPKRDVWVIGVDKDQ--YAEGQVEGTDDNVTLTSMVKKVDTVVEDVTKKASDGKF 292
Query: 297 KGG-IITLGLKENGVG 311
GG +T GL ++GVG
Sbjct: 293 PGGETLTYGLDQDGVG 308
>gb|AAG19258.1| (AE005021) ABC transporter (lipoprotein); YufN [Halobacterium sp.
NRC-1]
Length = 322
Score = 123 bits (305), Expect = 4e-27
Identities = 101/328 (30%), Positives = 144/328 (43%), Gaps = 41/328 (12%)
Query: 40 ILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKE--YDL 97
+++ +GG D SFND A GA+RA+ + G+ P S ++ LA S YDL
Sbjct: 1 MVYALGGLDDRSFNDAANRGAQRARLDHGIAYTNHEPDSIAELGETQATLAASSNPAYDL 60
Query: 98 LVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVRENEVDILFREQ-------EAAALM- 149
+ VGF L A PDQ+F ++D T N +F EQ AAL+
Sbjct: 61 VCCVGFRQADGLESAAAAAPDQQFMIVD--TAVDASNVASYVFEEQTGSFQAGRLAALLT 118
Query: 150 --GVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGT 207
+ A G A T+G V G+D P FH G+ G + T + +L Y G
Sbjct: 119 TRDIDAGGGATNPDARTVGFVGGVDEPLTHGFHAGFQAGVTH----TASDIDVLAAYIGD 174
Query: 208 FGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWY 267
F D + A + GA ++Y AG VG+ A Q G+ A+G D+ Q
Sbjct: 175 FEDVEAARTAAAAMYDAGADIVYHAAGGAGVGVLQAA-----QANGR-YAIGVDSDQSRS 228
Query: 268 APKYIPI---SGAKRVDVAVYDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAE 323
P+Y + S KR+D AVYDAI+ +DG G +++LGL NGV
Sbjct: 229 NPRYADVVLASMVKRIDTAVYDAIEATIDGDLPAGDVVSLGLATNGVS------------ 276
Query: 324 FAKEAGKLKDMTPDEVVQIVKEQREKYI 351
+ +L PD V + E RE +
Sbjct: 277 -VQYGTQLGPAIPDAVTDALGETREALV 303
>gb|AAC44712.1|AAC44712 (U49938) membrane lipoprotein BmpA [Borrelia burgdorferi]
Length = 339
Score = 110 bits (273), Expect = 2e-23
Identities = 103/350 (29%), Positives = 168/350 (47%), Gaps = 25/350 (7%)
Query: 13 LLLVSIV-AGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
+LL SIV C G G+ ++ KV+++ D G D SFN+ A G ++ K+E +E+
Sbjct: 8 ILLESIVFLSCSGKGS---LGSEIPKVSLIID-GTFDDKSFNESALNGVKKVKEEFKIEL 63
Query: 72 EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTG 129
S + L E L + DL+ L+G+ ++ A + PD K+A+ID +
Sbjct: 64 VLKESSSNSYLSDL-EGLKDAGS-DLIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSND 121
Query: 130 KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKY 189
+ N V + FR QE A L G IA+ ++ IG + G++ + F GY GAKY
Sbjct: 122 PIPANLVGMTFRAQEGAFLTGYIAAKLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY 178
Query: 190 FEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNE 249
K +K+ QY G+F D + G + A ++ +++ AGL +G + K E
Sbjct: 179 ----ANKDIKISTQYIGSFADLEAGRSVATRMYSDEIDIIHHAAGLGGIGAIEVAK---E 231
Query: 250 QGRGKALAMGQDASQEWYAPKYIPISGAKRVDVA--VYDAIKMVVDGTWKGGIITLGLKE 307
G G + +G D Q + AP + S K V A ++ + + + + G +I GLKE
Sbjct: 232 LGSGHYI-IGVDEDQAYLAPDNVITSTTKDVGRALNIFTSNHLKTNTSEGGKLINYGLKE 290
Query: 308 NGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
VG+ + F E KE L K + + +V KE EK++K ++
Sbjct: 291 GVVGFVRNPKMISF-ELEKEIDNLSSKIINKEIIVPSNKESYEKFLKEFI 339
>gb|AAG00584.1|AF288609_3 (AF288609) BmpA [Borrelia burgdorferi]
Length = 339
Score = 110 bits (273), Expect = 2e-23
Identities = 105/350 (30%), Positives = 168/350 (48%), Gaps = 25/350 (7%)
Query: 13 LLLVSIV-AGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
+LL SIV C G G+ ++ KV+++ D G D SFN+ A G ++ K+E +E+
Sbjct: 8 ILLESIVFLSCSGKGS---LGSEIPKVSLIID-GTFDDKSFNESALNGVKKVKEEFKIEL 63
Query: 72 EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTG 129
S + L E L + DL+ L+G+ ++ A + PD K+A+ID +
Sbjct: 64 VLKESSSNSYLSDL-EGLKDAGS-DLIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSND 121
Query: 130 KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKY 189
+ N V + FR QE A L G IA+ ++ IG + G++ + F GY GAKY
Sbjct: 122 PIPANLVGMTFRAQEGAFLTGYIAARLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY 178
Query: 190 FEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNE 249
K +K+ QY G+F D + G + A ++ +++ AGL +G + K E
Sbjct: 179 ----ANKDIKIFTQYIGSFADLEAGRSVATRMYSDEIDIIHHAAGLGGIGAIEVAK---E 231
Query: 250 QGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKE 307
G G + +G D Q + AP + S K V A+ + T++GG +I GLKE
Sbjct: 232 LGSGHYI-IGVDEDQAYLAPDNVITSTTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKE 290
Query: 308 NGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
VG+ + F E KE L K + + +V KE EK++K ++
Sbjct: 291 GVVGFVRNPKMISF-ELEKEIDNLSSKIINKEIIVPSNKESYEKFLKEFI 339
>sp|Q45010|BMPA_BORBU BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNODOMINANT ANTIGEN P39)
>gi|2120444|pir||I40289 membrane lipoprotein A - Lyme
disease spirochete >gi|7447862|pir||F70147 basic
membrane protein A (bmpA) - Lyme disease spirochete
>gi|508421|gb|AAA72406.1| (L24194) antigen P39 [Borrelia
burgdorferi] >gi|2688281|gb|AAC66757.1| (AE001143) basic
membrane protein A (bmpA) [Borrelia burgdorferi]
Length = 339
Score = 109 bits (271), Expect = 4e-23
Identities = 105/350 (30%), Positives = 168/350 (48%), Gaps = 25/350 (7%)
Query: 13 LLLVSIV-AGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
+LL SIV C G G+ ++ KV+++ D G D SFN+ A G ++ K+E +E+
Sbjct: 8 ILLESIVFLSCSGKGS---LGSEIPKVSLIID-GTFDDKSFNESALNGVKKVKEEFKIEL 63
Query: 72 EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTG 129
S + L E L + DL+ L+G+ ++ A + PD K+A+ID +
Sbjct: 64 VLKESSSNSYLSDL-EGLKDAGS-DLIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSND 121
Query: 130 KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKY 189
+ N V + FR QE A L G IA+ ++ IG + G++ + F GY GAKY
Sbjct: 122 PIPANLVGMTFRAQEGAFLTGYIAAKLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY 178
Query: 190 FEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNE 249
K +K+ QY G+F D + G + A ++ +++ AGL +G + K E
Sbjct: 179 ----ANKDIKISTQYIGSFADLEAGRSVATRMYSDEIDIIHHAAGLGGIGAIEVAK---E 231
Query: 250 QGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKE 307
G G + +G D Q + AP + S K V A+ + T++GG +I GLKE
Sbjct: 232 LGSGHYI-IGVDEDQAYLAPDNVITSTTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKE 290
Query: 308 NGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
VG+ + F E KE L K + + +V KE EK++K ++
Sbjct: 291 GVVGFVRNPKMISF-ELEKEIDNLSSKIINKEIIVPSNKESYEKFLKEFI 339
>gb|AAD21046.1| (AF116774) immunodominant antigen P39 [Borrelia burgdorferi]
Length = 339
Score = 109 bits (270), Expect = 6e-23
Identities = 105/350 (30%), Positives = 168/350 (48%), Gaps = 25/350 (7%)
Query: 13 LLLVSIV-AGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
+LL SIV C G G+ ++ KV+++ D G D SFN+ A G ++ K+E +E+
Sbjct: 8 ILLESIVFLSCSGKGS---LGSEIPKVSLIID-GTFDDKSFNESALNGVKKVKEEFKIEL 63
Query: 72 EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTG 129
S + L E L + DL+ L+G+ ++ A + PD K+A+ID +
Sbjct: 64 VLEESSSNSYLSDL-EGLKDAGS-DLIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSND 121
Query: 130 KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKY 189
+ N V + FR QE A L G IA+ ++ IG + G++ + F GY GAKY
Sbjct: 122 PIPANLVGMTFRAQEGAFLTGYIAAKLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY 178
Query: 190 FEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNE 249
K +K+ QY G+F D + G + A ++ +++ AGL +G + K E
Sbjct: 179 ----ANKDIKISTQYIGSFADLEAGRSVATRMYSDEIDIIHHAAGLGGIGAIEVAK---E 231
Query: 250 QGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKE 307
G G + +G D Q + AP + S K V A+ + T++GG +I GLKE
Sbjct: 232 LGSGHYI-IGVDEDQAYLAPDNVITSTTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKE 290
Query: 308 NGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
VG+ + F E KE L K + + +V KE EK++K ++
Sbjct: 291 GVVGFVRNPKMISF-ELEKEIDNLSSKIINKEIIVPSNKESYEKFLKEFI 339
>emb|CAA65879.1| (X97240) membrane protein A [Borrelia burgdorferi]
Length = 325
Score = 108 bits (266), Expect = 2e-22
Identities = 97/325 (29%), Positives = 156/325 (47%), Gaps = 21/325 (6%)
Query: 37 KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
KV+++ D G D SFN+ A G ++ K+E +E+ S + L E L + D
Sbjct: 16 KVSLIID-GTFDDKSFNESALNGVKKVKEEFKIELVLKESSSNSYLSDL-EGLKDAGS-D 72
Query: 97 LLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTGKVRENEVDILFREQEAAALMGVIAS 154
L+ L+G+ ++ A + PD K+A+ID + + N V + FR QE A L G IA+
Sbjct: 73 LIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSNDPIPANLVGMTFRAQEGAFLTGYIAA 132
Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
++ IG + G++ + F GY GAKY K +K+ QY G+F D + G
Sbjct: 133 RLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKDIKISTQYIGSFADLEAG 185
Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
+ A ++ +++ AGL +G + K E G G + +G D Q + AP +
Sbjct: 186 RSVATRMYSDEIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQAYLAPDNVIT 241
Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
S K V A+ + T++GG +I GLKE VG+ + F E KE L
Sbjct: 242 STTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKEGVVGFVRNPKMISF-ELEKEIDNLS 300
Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
K + + +V KE EK++K ++
Sbjct: 301 SKIINKEIIVPSNKESYEKFLKEFI 325
>emb|CAA57235.1| (X81515) bmpA(p39,ORF1) [Borrelia burgdorferi]
Length = 339
Score = 106 bits (263), Expect = 4e-22
Identities = 104/350 (29%), Positives = 167/350 (47%), Gaps = 25/350 (7%)
Query: 13 LLLVSIV-AGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
+LL SIV C G G+ ++ KV+++ D G D SFN+ A G ++ K+E +E+
Sbjct: 8 ILLESIVFLSCSGKGS---LGSEIPKVSLIID-GTFDDKSFNESALNGVKKVKEEFKIEL 63
Query: 72 EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTG 129
S + L E L + DL+ L+G+ ++ A + PD K+A+ID +
Sbjct: 64 VLKESSSNSYLSDL-EGLKDAGS-DLIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSND 121
Query: 130 KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKY 189
+ N V + FR QE A L G IA+ ++ IG + G++ + F GY GAKY
Sbjct: 122 PIPANLVGMTFRAQEGAFLTGYIAAKLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY 178
Query: 190 FEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNE 249
K +K+ QY G+F D + G + A ++ +++ A L +G + K E
Sbjct: 179 ----ANKDIKISTQYIGSFADLEAGRSVATRMYSDEIDIIHHAASLGGIGAIEVPK---E 231
Query: 250 QGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKE 307
G G + +G D Q + AP + S K V A+ + T++GG +I GLKE
Sbjct: 232 LGSGHYI-IGVDEDQAYLAPDNVITSTTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKE 290
Query: 308 NGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
VG+ + F E KE L K + + +V KE EK++K ++
Sbjct: 291 GVVGFVRNPKMISF-ELEKEIDNLSSKIINKEIIVPSNKESYEKFLKEFI 339
>emb|CAA65874.1| (X97235) membrane protein A [Borrelia burgdorferi]
Length = 325
Score = 106 bits (262), Expect = 5e-22
Identities = 96/325 (29%), Positives = 155/325 (47%), Gaps = 21/325 (6%)
Query: 37 KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
KV+++ D G D SFN+ A G ++ K+E +E+ S + L E L + D
Sbjct: 16 KVSLIID-GTFDDKSFNESALNGVKKVKEEFKIELVLKESSSNSYLSDL-EGLKDAGS-D 72
Query: 97 LLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTGKVRENEVDILFREQEAAALMGVIAS 154
L+ L+G+ ++ A + PD K+A+ID + + N V + FR QE A L G IA+
Sbjct: 73 LIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSNDPIPANLVGMTFRAQEGAFLTGYIAA 132
Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
++ IG + G++ + F GY GAKY K +K+ QY G+F D + G
Sbjct: 133 RLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKDIKISTQYIGSFADLEAG 185
Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
+ A ++ +++ AG +G + K E G G + +G D Q + AP +
Sbjct: 186 RSVATRMYSDEIDIIHHAAGFGGIGAIEVAK---ELGSGHYI-IGVDEDQAYLAPDNVIT 241
Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
S K V A+ + T++GG +I GLKE VG+ + F E KE L
Sbjct: 242 STTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKEGVVGFVRNPKMISF-ELEKEIDNLS 300
Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
K + + +V KE EK++K ++
Sbjct: 301 SKIINKEIIVPSNKESYEKFLKEFI 325
>sp|P29724|TMPC_TREPA MEMBRANE LIPOPROTEIN TMPC PRECURSOR (MEMBRANE PROTEIN C) (35 KD
ANTIGEN) >gi|7429431|pir||H71340 membrane lipoprotein
TmpC precursor - syphilis spirochete
>gi|3322590|gb|AAC65302.1| (AE001211) membrane
lipoprotein (tmpC) [Treponema pallidum]
Length = 353
Score = 104 bits (258), Expect = 1e-21
Identities = 84/311 (27%), Positives = 137/311 (44%), Gaps = 18/311 (5%)
Query: 12 GLLLVSIVAGCIGG-----GTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKE 66
G+ ++ GC G E V ++ D G D SFN + G R +E
Sbjct: 11 GVFCAMLLIGCSKSDRPQMGNAGGAEGGDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQE 70
Query: 67 LGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS 126
+ +Y+T + + P L A + L+V G + E + ++P QKF +ID+
Sbjct: 71 NNAKCKYVTASTDAEYVPSLSAFAD-ENMGLVVACGSFLVEAVIETSARFPKQKFLVIDA 129
Query: 127 TTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFG 186
+ R+N V +F + E + L+GV A+ A E G +G + GM++ + F G+ G
Sbjct: 130 VV-QDRDNVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAG 188
Query: 187 AKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKD 246
K + ++++ + TF D Q G A +L G V++ +AG T G+ +D
Sbjct: 189 VKAVD----PDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGGTGNGVIKEARD 244
Query: 247 WNEQGRGKALAMGQDASQEW-----YAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGG-I 300
G+ +G D Q + + S KR DVA KM DG++ GG
Sbjct: 245 RRLNGQ-DVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFPGGQS 303
Query: 301 ITLGLKENGVG 311
I GL++ VG
Sbjct: 304 IMFGLEDKAVG 314
>sp|O31280|BMPA_BORAF BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNODOMINANT ANTIGEN P39)
Length = 339
Score = 104 bits (258), Expect = 1e-21
Identities = 102/361 (28%), Positives = 172/361 (47%), Gaps = 28/361 (7%)
Query: 1 MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGA 60
M K+ L + G++ +S C G ++ E+ KV+++ D G D SFN+ A G
Sbjct: 1 MNKILLLILFEGVIFLS----CSG---KSGLESGIPKVSLVID-GTFDDKSFNESALNGV 52
Query: 61 ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK 120
++ K+E +E+ + S LE L + +L+ L+G+ ++ V+ + + K
Sbjct: 53 KKLKEEFEIEL-VLKESSTNSYLSDLEGLKDAGS-NLIWLIGYKFSDVAKAVSLQNSEMK 110
Query: 121 FALIDSTTGK--VRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
+A+ID + N V + FR QE A L G IA+ ++ IG + G++ +
Sbjct: 111 YAIIDPVYSNEPIPANLVGMTFRAQEGAFLTGYIAAKVSKT---GKIGFLGGIEGDIVDA 167
Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
F GY GAKY K +K+ QY G+F D + G + A ++ G +++ AGL +
Sbjct: 168 FRYGYEAGAKY----ANKDIKIFSQYIGSFSDLEAGRSVATKMYSDGIDIIHHAAGLGGI 223
Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWK 297
G + K E G G + +G D Q + AP + S K V ++ + T++
Sbjct: 224 GAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVITSTTKDVGRSLNLLTSNYLKTNTFE 279
Query: 298 GG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPY 354
GG +I GLKE VG+ + F E KE L K + + +V KE EK++K +
Sbjct: 280 GGKLINYGLKEGVVGFVRNPKMIPF-EVEKEIDSLSSKIINKEVIVPYNKESYEKFLKEF 338
Query: 355 V 355
+
Sbjct: 339 I 339
>emb|CAA57236.1| (X81516) bmpA(p39,ORF1) [Borrelia burgdorferi]
Length = 339
Score = 104 bits (257), Expect = 2e-21
Identities = 102/361 (28%), Positives = 172/361 (47%), Gaps = 28/361 (7%)
Query: 1 MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGA 60
M K+ L + G++ +S C G ++ E+ KV+++ D G D SFN+ A G
Sbjct: 1 MNKILLLILFEGVIFLS----CSG---KSGLESGIPKVSLVID-GTFDDKSFNESALNGV 52
Query: 61 ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK 120
++ K+E +E+ + S LE L + +L+ L+G+ ++ V+ + + K
Sbjct: 53 KKLKEEFEIEL-VLKESSTNSYLSDLEGLKDAGS-NLIWLIGYKFSDVAKAVSLQNSEMK 110
Query: 121 FALIDSTTGK--VRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
+A+ID + N V + FR QE A L G IA+ ++ IG + G++ +
Sbjct: 111 YAIIDPVYSNEPIPANLVGMTFRAQEGAFLTGYIAAKVSKT---GKIGFLGGIEGDIVDA 167
Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
F GY GAKY K +K+ QY G+F D + G + A ++ G +++ AGL +
Sbjct: 168 FRYGYEAGAKY----ANKDIKIFSQYIGSFSDLEAGRSVATKMYSDGIDIIHHAAGLGGI 223
Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWK 297
G + K E G G + +G D Q + AP + S K V ++ + T++
Sbjct: 224 GAIEVPK---ELGSGHYI-IGVDEDQSYLAPNNVITSTTKDVGRSLNLFTSNYLKTNTFE 279
Query: 298 GG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPY 354
GG +I GLKE VG+ + F E KE L K + + +V KE EK++K +
Sbjct: 280 GGKLINYGLKEGVVGFVRNPKMIPF-EVEKEIDSLSSKIINKEVIVPYNKESYEKFLKEF 338
Query: 355 V 355
+
Sbjct: 339 I 339
>sp|Q45011|BMPB_BORBU BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2120441|pir||I40290
hypothetical protein - Lyme disease spirochete
>gi|508422|gb|AAA72407.1| (L24194) [Borrelia burgdorferi
immunodominant antigen P39 gene, complete cds.], gene
products >gi|1753226|gb|AAC44713.1|AAC44713 (U49938)
membrane lipoprotein BmpB [Borrelia burgdorferi]
Length = 341
Score = 104 bits (256), Expect = 2e-21
Identities = 98/359 (27%), Positives = 174/359 (48%), Gaps = 37/359 (10%)
Query: 6 LALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKK 65
+ + I G+LL S + G E+ + KK+K+++L D G D SFN A R KK
Sbjct: 3 IVIFIFGILLTSCFSR---NGIESSS--KKIKISMLVD-GVLDDKSFNSSANEALLRLKK 56
Query: 66 ELGVEIEYMTPKSKEDMKPL----LEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKF 121
+ IE + + + L+ L ++ DL+ LVG++ T V+ + P +
Sbjct: 57 DFPENIEEVFSCAISGVYSSYVSDLDNLKRNGS-DLIWLVGYMLTDASLLVSSENPKISY 115
Query: 122 ALIDSTTG---KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
+ID G ++ EN + ++FR ++ A L G IA+ ++ IG + GM +
Sbjct: 116 GIIDPIYGDDVQIPENLIAVVFRVEQGAFLAGYIAAKKSFS---GKIGFIGGMKGNIVDA 172
Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
F GY GAKY K ++++ +Y+ +F D +G A ++ +G V++ AGL +
Sbjct: 173 FRYGYESGAKY----ANKDIEIISEYSNSFSDVDIGRTIASKMYSKGIDVIHFAAGLAGI 228
Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVY----DAIKMVVDG 294
G+ +A K+ + +G D Q + APK S K + A+Y + IK +
Sbjct: 229 GVIEAAKNLGD----GYYVIGADQDQSYLAPKNFITSVIKNIGDALYLITGEYIKN--NN 282
Query: 295 TWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIK 352
W+GG ++ +GL++ +G L +F E+ K + K + + +V +E+ E +IK
Sbjct: 283 VWEGGKVVQMGLRDGVIG---LPNANEF-EYIKVLER-KIVNKEIIVPCNQEEYEIFIK 336
>emb|CAA65876.1| (X97237) membrane protein A [Borrelia afzelii]
Length = 325
Score = 103 bits (255), Expect = 3e-21
Identities = 94/325 (28%), Positives = 156/325 (47%), Gaps = 21/325 (6%)
Query: 37 KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
KV+++ D G D SFN+ A G ++ K+E +E+ + S LE L + +
Sbjct: 16 KVSLVID-GTFDDKSFNESALNGVKKLKEEFEIEL-VLKESSTNSYLSDLEGLKDAGS-N 72
Query: 97 LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
L+ L+G+ ++ V+ + + K+A+ID + N V + FR QE A L G IA+
Sbjct: 73 LIWLIGYKFSDVAKAVSLQNSEMKYAIIDPVYSNEPIPSNLVGMTFRAQEGAFLTGYIAA 132
Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
++ IG + G++ + F GY GAKY K +K+ QY G+F D + G
Sbjct: 133 KVSKT---GKIGFLGGIEGDIVDAFRYGYEAGAKY----ANKDIKIFSQYIGSFSDLEAG 185
Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
+ A ++ G +++ AGL +G + K E G G + +G D Q + AP +
Sbjct: 186 RSVATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVIT 241
Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
S K V ++ + T++GG +I GLKE VG+ + F E KE L
Sbjct: 242 STTKDVGRSLNLFTSNYLKTNTFEGGKLINYGLKEGVVGFVRNPKMIPF-EVEKEIDSLS 300
Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
K + + +V KE EK++K ++
Sbjct: 301 SKIINKEVIVPYNKESYEKFLKEFI 325
>pir||H75318 membrane lipoprotein - Deinococcus radiodurans (strain R1)
>gi|6459864|gb|AAF11620.1|AE002043_5 (AE002043) membrane
lipoprotein [Deinococcus radiodurans]
Length = 379
Score = 103 bits (255), Expect = 3e-21
Identities = 85/323 (26%), Positives = 143/323 (43%), Gaps = 53/323 (16%)
Query: 33 AKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQS 92
A+ V+V + +D GG+ D SFN AY G++ A K+LG++++ P + + A+
Sbjct: 32 AQAVRVGMAYDAGGKADKSFNQSAYEGSQLAAKKLGIQVKDFEPSDPSQIIQGVRSFAK- 90
Query: 93 KEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVRENEVDILFREQEAAALMGVI 152
+ +DL + VGF + + +VA + PD F L+D + +N ++F E++ + L+G +
Sbjct: 91 EGFDLTIGVGFSNNASITQVAKENPDLYFGLVDDVS--TAKNVASLVFNEEQGSYLVGYL 148
Query: 153 ASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTG----TF 208
A A +G + GM+IP + KF GY G K K ++ QY G +
Sbjct: 149 A---AMNSSTGVVGFIGGMNIPLIHKFEAGYRAGVKAANPK----ATIISQYVGNTPEAW 201
Query: 209 GDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDW-----------------NEQG 251
+ A + +GA +++ AG + G+ D +K N +
Sbjct: 202 NNPGKAKEIAANMRGRGADIIFAAAGGSGNGLIDYIKQTPCLNASQLPKGVTFKSDNFKN 261
Query: 252 RGKALA--------------MGQDASQEWYAP--------KYIPISGAKRVDVAVYDAIK 289
K+ A +G D++Q + + S KRVD AVY I
Sbjct: 262 VKKSAAYAKACTGNTRPMFFIGVDSNQNYLGDFDKNPATLNHGLTSMVKRVDNAVYALIN 321
Query: 290 MVVDGTWKGGIITLGLKENGVGY 312
V + +K G GLK+ GV Y
Sbjct: 322 EVKNDKFKAGERRFGLKDGGVAY 344
>emb|CAA65880.1| (X97241) membrane protein A [Borrelia afzelii]
Length = 325
Score = 102 bits (253), Expect = 5e-21
Identities = 94/325 (28%), Positives = 156/325 (47%), Gaps = 21/325 (6%)
Query: 37 KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
KV+++ D G D SFN+ A G ++ K+E +E+ + S LE L + +
Sbjct: 16 KVSLVID-GTFDDKSFNESALNGVKKLKEEFEIEL-VLKESSTNSYLSDLEGLKDAGS-N 72
Query: 97 LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
L+ L+G+ ++ V+ + + K+A+ID + N V + FR QE A L G IA+
Sbjct: 73 LIWLIGYKFSDVAKAVSLQNSEMKYAIIDPVYSNEPIPANLVGMTFRAQEGAFLTGYIAA 132
Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
++ IG + G++ + F GY GAKY K +K+ QY G+F D + G
Sbjct: 133 KVSKT---GKIGFLGGIEGDIVDAFRYGYEAGAKY----ANKDIKIFSQYIGSFSDLEAG 185
Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
+ A ++ G +++ AGL +G + K E G G + +G D Q + AP +
Sbjct: 186 RSVATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVIT 241
Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
S K V ++ + T++GG +I GLKE VG+ + F E KE L
Sbjct: 242 STTKDVGRSLNLLTSNYLKTNTFEGGKLINYGLKEGVVGFVRNPKMIPF-EVEKEIDSLS 300
Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
K + + +V KE EK++K ++
Sbjct: 301 SKIINKEVIVPYNKESYEKFLKEFI 325
>emb|CAA57237.1| (X81517) bmpB(p39,ORF2) [Borrelia burgdorferi]
Length = 341
Score = 102 bits (253), Expect = 5e-21
Identities = 97/359 (27%), Positives = 173/359 (48%), Gaps = 37/359 (10%)
Query: 6 LALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKK 65
+ + I G+LL S + G E+ + KK+K+++L D G D SFN A KK
Sbjct: 3 IVIFIFGILLTSCFSR---NGIESSS--KKIKISMLVD-GVLDDKSFNSSANEALLPLKK 56
Query: 66 ELGVEIEYMTPKSKEDMKPL----LEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKF 121
+ IE + P + + L+ L ++ DL+ LVG++ T V+ + P +
Sbjct: 57 DFPENIEEVFPCAISGVYSSYVSDLDNLKRNGS-DLIWLVGYMLTDASLLVSSENPKISY 115
Query: 122 ALIDSTTG---KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
+ID G ++ EN + ++FR ++ A L G IA+ ++ IG + GM +
Sbjct: 116 GIIDPIYGDDVQIPENLIAVVFRVEQGAFLAGYIAAKKSFS---GKIGFIGGMKGNIVDA 172
Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
F GY GAKY K ++++ +Y+ +F D +G A ++ +G V++ AGL +
Sbjct: 173 FRYGYESGAKY----ANKDIEIISEYSNSFSDVDIGRTIASKMYSKGIDVIHFAAGLAGI 228
Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVY----DAIKMVVDG 294
G+ + K+ + +G D Q + APK S K + A+Y + IK +
Sbjct: 229 GVIETAKNLGD----GYYVIGADQDQSYLAPKNFITSVIKNIGDALYLITGEYIKN--NN 282
Query: 295 TWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIK 352
W+GG ++ +GL++ +G L +F E+ K + K + + +V +E+ E +IK
Sbjct: 283 VWEGGKVVQMGLRDGVIG---LPNANEF-EYIKVLER-KIINKEIIVPCNQEEYEIFIK 336
>sp|Q44743|BMPD_BORBU BASIC MEMBRANE PROTEIN D PRECURSOR >gi|1262444|gb|AAC43984.1|
(U35450) membrane protein D [Borrelia burgdorferi]
Length = 341
Score = 102 bits (252), Expect = 7e-21
Identities = 84/302 (27%), Positives = 142/302 (46%), Gaps = 21/302 (6%)
Query: 14 LLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEY 73
L+ + C + K+EAK V + + G D FN+ + + K +L + I
Sbjct: 9 LIFLFIVAC-SSSDDGKSEAKTVSLIV---DGAFDDKGFNESSSKAIRKLKADLNINIIE 64
Query: 74 MTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVR- 132
+ + + +L+ +GF + L + A + +A+I+ +++
Sbjct: 65 KASTGNSYLGDIAN--LEDGNSNLIWGIGFRLSDILFQRASENVSVNYAIIEGVYDEIQI 122
Query: 133 -ENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFE 191
+N ++I FR +E A L G AS A + G IG V G+ L F GY GAKY
Sbjct: 123 PKNLLNISFRSEEVAFLAGYFAS-KASKTG--KIGFVGGVRGKVLESFMYGYEAGAKYAN 179
Query: 192 KKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQG 251
+K++ QY GTFGD +G +TA + + G +++ AGL+ +G+ +A K+
Sbjct: 180 SN----IKVVSQYVGTFGDFGLGRSTASNMYRDGVDIIFAAAGLSGIGVIEAAKELGPD- 234
Query: 252 RGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVD-GTWKGG-IITLGLKENG 309
+G D Q + AP + +S K+VD +Y K ++ G GG + LGLKE+G
Sbjct: 235 ---HYIIGVDQDQSYLAPNNVIVSAVKKVDSLMYSLTKKYLETGVLDGGKTMFLGLKEDG 291
Query: 310 VG 311
+G
Sbjct: 292 LG 293
>pir||E70147 basic membrane lipoprotein B (bmpB) - Lyme disease spirochete
>gi|2688282|gb|AAC66758.1| (AE001143) basic membrane
protein B (bmpB) [Borrelia burgdorferi]
Length = 341
Score = 102 bits (252), Expect = 7e-21
Identities = 97/359 (27%), Positives = 173/359 (48%), Gaps = 37/359 (10%)
Query: 6 LALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKK 65
+ + I G+LL S + G E+ + KK+K+++L D G D SFN A R KK
Sbjct: 3 IVIFIFGILLTSCFSR---NGIESSS--KKIKISMLVD-GVLDDKSFNSSANEALLRLKK 56
Query: 66 ELGVEIEYMTPKSKEDMKPL----LEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKF 121
+ IE + + + L+ L ++ DL+ LVG++ T V+ + P +
Sbjct: 57 DFPENIEEVFSCAISGVYSSYVSDLDNLKRNGS-DLIWLVGYMLTDASLLVSSENPKISY 115
Query: 122 ALIDSTTG---KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
+ID G ++ EN + ++FR ++ A L G IA+ ++ IG + GM +
Sbjct: 116 GIIDPIYGDDVQIPENLIAVVFRVEQGAFLAGYIAAKKSFS---GKIGFIGGMKGNIVDA 172
Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
F GY GAKY K ++++ +Y+ +F D +G A ++ +G V++ AGL +
Sbjct: 173 FRYGYESGAKY----ANKDIEIISEYSNSFSDVDIGRTIASKMYSKGIDVIHFAAGLAGI 228
Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVY----DAIKMVVDG 294
G+ + K+ + +G D Q + APK S K + A+Y + IK +
Sbjct: 229 GVIETAKNLGD----GYYVIGADQDQSYLAPKNFITSVIKNIGDALYLITGEYIKN--NN 282
Query: 295 TWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIK 352
W+GG ++ +GL++ +G L +F E+ K + K + + +V +E+ E +IK
Sbjct: 283 VWEGGKVVQMGLRDGVIG---LPNANEF-EYIKVLER-KIINKEIIVPCNQEEYEIFIK 336
>pir||H70147 basic membrane protein D (bmpD) homolog - Lyme disease spirochete
>gi|2688297|gb|AAB91505.1| (AE001144) basic membrane
protein D (bmpD) [Borrelia burgdorferi]
Length = 360
Score = 102 bits (252), Expect = 7e-21
Identities = 84/302 (27%), Positives = 142/302 (46%), Gaps = 21/302 (6%)
Query: 14 LLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEY 73
L+ + C + K+EAK V + + G D FN+ + + K +L + I
Sbjct: 28 LIFLFIVAC-SSSDDGKSEAKTVSLIV---DGAFDDKGFNESSSKAIRKLKADLNINIIE 83
Query: 74 MTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVR- 132
+ + + +L+ +GF + L + A + +A+I+ +++
Sbjct: 84 KASTGNSYLGDIAN--LEDGNSNLIWGIGFRLSDILFQRASENVSVNYAIIEGVYDEIQI 141
Query: 133 -ENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFE 191
+N ++I FR +E A L G AS A + G IG V G+ L F GY GAKY
Sbjct: 142 PKNLLNISFRSEEVAFLAGYFAS-KASKTG--KIGFVGGVRGKVLESFMYGYEAGAKYAN 198
Query: 192 KKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQG 251
+K++ QY GTFGD +G +TA + + G +++ AGL+ +G+ +A K+
Sbjct: 199 SN----IKVVSQYVGTFGDFGLGRSTASNMYRDGVDIIFAAAGLSGIGVIEAAKELGPD- 253
Query: 252 RGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVD-GTWKGG-IITLGLKENG 309
+G D Q + AP + +S K+VD +Y K ++ G GG + LGLKE+G
Sbjct: 254 ---HYIIGVDQDQSYLAPNNVIVSAVKKVDSLMYSLTKKYLETGVLDGGKTMFLGLKEDG 310
Query: 310 VG 311
+G
Sbjct: 311 LG 312
>pir||A43595 membrane protein C precursor - Treponema pallidum subsp. pallidum
>gi|581809|emb|CAA40968.1| (X57836) tmbC [Treponema
pallidum]
Length = 353
Score = 102 bits (251), Expect = 9e-21
Identities = 78/280 (27%), Positives = 128/280 (44%), Gaps = 13/280 (4%)
Query: 38 VAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDL 97
V ++ D G D SFN + G R +E + +Y+T + + P L A + L
Sbjct: 42 VGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTDAEYVPSLSAFAD-ENMGL 100
Query: 98 LVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVRENEVDILFREQEAAALMGVIASGMA 157
+V G + E + ++P QKF +ID+ + R+N V +F + E + L+GV A+
Sbjct: 101 VVACGSFLVEAVIETSARFPKQKFLVIDAVV-QDRDNVVSAVFGQNEGSFLVGVAAALKR 159
Query: 158 YELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNT 217
E G +G + GM++ + F G+ G K + ++++ + TF D Q G
Sbjct: 160 KEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVD----PDIQVVVEVANTFSDPQKGQAL 215
Query: 218 AMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEW-----YAPKYI 272
A +L G V++ +AG T G+ +D G+ +G D Q + +
Sbjct: 216 AAKLYDSGVNVIFQVAGGTGNGVIKEARDRRLNGQ-DVWVIGVDRDQYMDGVYDGSKSVV 274
Query: 273 PISGAKRVDVAVYDAIKMVVDGTWKGG-IITLGLKENGVG 311
S KR DVA KM DG++ GG I GL++ VG
Sbjct: 275 LTSMVKRADVAAERISKMAYDGSFPGGQSIMFGLEDKAVG 314
>emb|CAA65878.1| (X97239) membrane protein A [Borrelia afzelii]
Length = 325
Score = 102 bits (251), Expect = 9e-21
Identities = 94/325 (28%), Positives = 155/325 (46%), Gaps = 21/325 (6%)
Query: 37 KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
KV+++ D G D SFN+ A G ++ K+E +E+ + S LE L + +
Sbjct: 16 KVSLVID-GTFDDKSFNESALNGVKKLKEEFEIEL-VLKESSTNSYLSDLEGLKDAGS-N 72
Query: 97 LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
L+ L+G+ ++ V+ + + K+A+ID + N V + FR QE A L G IA+
Sbjct: 73 LIWLIGYKFSDVAKAVSLQNSEMKYAIIDPVYSNEPIPANLVGMTFRAQEGAFLTGYIAA 132
Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
++ IG + G++ + F GY GAKY K +K+ QY G+F D + G
Sbjct: 133 KVSKT---GKIGFLGGIEGDIVDAFRYGYEAGAKY----ANKDIKIFSQYIGSFSDLEAG 185
Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
+ A ++ G + + AGL +G + K E G G + +G D Q + AP +
Sbjct: 186 RSVATKMYSDGIDITHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVVT 241
Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
S K V ++ + T++GG +I GLKE VG+ + F E KE L
Sbjct: 242 STTKDVGRSLNLLTSNYLKTNTFEGGKLINYGLKEGVVGFVRNPKMIPF-EVEKEIDSLS 300
Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
K + + +V KE EK++K ++
Sbjct: 301 SKIINKEVIVPYNKESYEKFLKEFI 325
>sp|O31357|BMPA_BORGA BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNODOMINANT ANTIGEN P39)
>gi|2598251|emb|CAA65883.1| (X97244) membrane protein A
[Borrelia garinii]
Length = 325
Score = 101 bits (250), Expect = 1e-20
Identities = 97/340 (28%), Positives = 162/340 (47%), Gaps = 24/340 (7%)
Query: 22 CIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKED 81
C G G+ E+ KV+++ + G D SFN+ A G ++ K+E +E+ + S
Sbjct: 4 CSGKGS---LESGIPKVSVIVN-GTFDDKSFNESALNGIKKVKEEFKIEL-VLKESSTNS 58
Query: 82 MKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDIL 139
LE L + +L+ L+G+ ++ V+ + P+ K+A+ID + + N V +
Sbjct: 59 YLSDLEGLKDAGS-NLIWLIGYRFSDVAKAVSLQNPEIKYAIIDPVYSEEPIPTNLVGMT 117
Query: 140 FREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVK 199
FR QE A L G IA+ ++ IG + G++ + F GY GAKY K +K
Sbjct: 118 FRAQEGAFLTGYIAAKVSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKDIK 170
Query: 200 LLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMG 259
+ Y G+F D + G + A ++ G +++ A L +G + K E G G + +G
Sbjct: 171 ISAHYIGSFNDVEAGRSVATKMYSDGIDIIHHAASLGGIGAIEVAK---ELGSGHYI-IG 226
Query: 260 QDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDG 317
D Q + AP I S K V ++ + T++GG +I GLKE VG+
Sbjct: 227 VDEDQSYLAPNNIITSATKDVGRSLNIFTSNYLKTNTFEGGRLINYGLKEGVVGFVKNPK 286
Query: 318 VKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
+ F E KE L K + + +V KE EK++K ++
Sbjct: 287 MIPF-ELEKEIDNLSSKIINQEIIVPYNKESYEKFLKEFI 325
>emb|CAA65877.1| (X97238) membrane protein A [Borrelia garinii]
Length = 325
Score = 100 bits (247), Expect = 3e-20
Identities = 93/325 (28%), Positives = 156/325 (47%), Gaps = 21/325 (6%)
Query: 37 KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
KV+++ + G D SFN+ A G ++ K+E +E+ + S LE L + +
Sbjct: 16 KVSVIVN-GTFDDKSFNESALNGIKKVKEEFKIEL-VLKESSTNSYLSDLEGLKDAGS-N 72
Query: 97 LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
L+ L+G+ ++ V+ + + K+A+ID + + N V + FR QE A L G IA+
Sbjct: 73 LIWLIGYRFSDVAKAVSLQNSEIKYAIIDPVYSEEPIPANLVGMTFRAQEGAFLTGYIAA 132
Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
++ IG + G++ + F GY GAKY K +K+ Y G+F D + G
Sbjct: 133 KVSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKDIKISAHYIGSFDDVEAG 185
Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
+ A ++ G +++ AGL +G + K E G G + +G D Q + AP +
Sbjct: 186 RSVATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVIT 241
Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
S K V A+ + T++GG +I GLKE VG+ + F E KE L
Sbjct: 242 SSTKDVGRALNIFTSSYLKTNTFEGGRLINYGLKEGVVGFVKNPKMIPF-ELEKEIDNLS 300
Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
K + + +V KE EK++K ++
Sbjct: 301 SKIINQEIIVPYNKESYEKFLKEFI 325
>sp|O31362|BMPB_BORGA BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2598261|emb|CAA57238.1|
(X81518) bmpB(p39,ORF2) [Borrelia garinii]
Length = 341
Score = 100 bits (246), Expect = 4e-20
Identities = 105/396 (26%), Positives = 179/396 (44%), Gaps = 68/396 (17%)
Query: 6 LALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKK 65
+ + I+G+LL S AG E ++ + K+K+++L D G D SFN A R ++
Sbjct: 3 IVIFILGILLTSCFAG-----NEIESGSSKIKISMLVD-GVLDDKSFNSSANRALLRLEE 56
Query: 66 ELGVEIEYMTPKSKEDMKPL----LEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKF 121
+ IE + + + L+ L + DL+ LVG++ T V+ + P +
Sbjct: 57 DFPENIEKVFSSAASGVYSSYVSDLDNLKMNGS-DLIWLVGYMLTDASLSVSLENPKISY 115
Query: 122 ALID---STTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
+ID S ++ +N + ++FR ++ A L G IA+ + IG + G+ +
Sbjct: 116 GIIDPVYSDDVQIPKNLIGVVFRIEQGAFLAGYIAAKKSVS---GKIGFIGGVKGDIVDA 172
Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
F GY GAKY +K ++++ +Y+ +F D +G A ++ +G +++ AGL +
Sbjct: 173 FRYGYEAGAKYADKG----IEIVSEYSNSFSDVNIGRAIANKMYAKGIDIIHFAAGLAGI 228
Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVV--DGTW 296
G+ +A K E G G +G D Q AP+ S K V A+Y + + TW
Sbjct: 229 GVIEAPK---ELGDG-YYVIGADQDQSHLAPRNFITSVIKNVGDALYLVTSEYLKNNNTW 284
Query: 297 KGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYV 355
+GG II +GL++ VG L +F +YIK
Sbjct: 285 EGGKIIQMGLRDGVVG---LSNANKF---------------------------EYIK--- 311
Query: 356 WDIVHELEEKIKSGEIVFKTPKTHEEYEQIIRELEK 391
+E KI + EI+ P HE YE I+++ K
Sbjct: 312 -----VIERKIVNEEII--VPYNHEGYEIFIKQILK 340
>gb|AAG00582.1|AF288609_1 (AF288609) BmpD [Borrelia burgdorferi]
Length = 341
Score = 99.8 bits (245), Expect = 5e-20
Identities = 83/302 (27%), Positives = 141/302 (46%), Gaps = 21/302 (6%)
Query: 14 LLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEY 73
L+ + C + K+ AK V + + G D FN+ + + K +L + I
Sbjct: 9 LIFLFIVAC-SSSDDGKSGAKTVSLIV---DGAFDDKGFNESSSKAIRKLKADLNINIIE 64
Query: 74 MTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVR- 132
+ + + +L+ +GF + L + A + +A+I+ +++
Sbjct: 65 KASTGNSYLGDIAN--LEDGNSNLIWGIGFRLSDILFQRASENVSVNYAIIEGVYDEIQI 122
Query: 133 -ENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFE 191
+N ++I FR +E A L G AS A + G IG V G+ L F GY GAKY
Sbjct: 123 PKNLLNISFRSEEVAFLAGYFAS-KASKTG--KIGFVGGVRGKVLESFMYGYEAGAKYAN 179
Query: 192 KKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQG 251
+K++ QY GTFGD +G +TA + + G +++ AGL+ +G+ +A K+
Sbjct: 180 SN----IKVVSQYVGTFGDFGLGRSTASNMYRDGVDIIFAAAGLSGIGVIEAAKELGPD- 234
Query: 252 RGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVD-GTWKGG-IITLGLKENG 309
+G D Q + AP + +S K+VD +Y K ++ G GG + LGLKE+G
Sbjct: 235 ---HYIIGVDQDQSYLAPNNVIVSAVKKVDSLMYSLTKKYLETGVLDGGKTMFLGLKEDG 291
Query: 310 VG 311
+G
Sbjct: 292 LG 293
>sp|O31284|BMPB_BORAF BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2598239|emb|CAA57239.1|
(X81519) bmpB(p39,ORF2) [Borrelia afzelii]
Length = 341
Score = 92.4 bits (226), Expect = 8e-18
Identities = 99/357 (27%), Positives = 170/357 (46%), Gaps = 33/357 (9%)
Query: 6 LALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKK 65
+ + I G+LL S + G E+ + K+K+++L D G D SFN A R KK
Sbjct: 3 IVIFIFGILLTSCFSK---NGIESGSS--KIKISMLVD-GVLDDKSFNSSANEALLRLKK 56
Query: 66 ELGVEIEYMTPKSKEDMKPL----LEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKF 121
+ IE + + + L+ L + L+ LVG++ V+ + P+ +
Sbjct: 57 DFPENIEKVFSSAVSGVYSSYVSDLDNLKMNGS-GLIWLVGYMLADVSLSVSLENPEINY 115
Query: 122 ALIDSTTG---KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
+ID G ++ +N + ++FR ++ A L G IA+ + IG V G DI ++
Sbjct: 116 GIIDPIYGDDVQIPKNLIGVVFRIEQGAFLAGYIAAKKSVSSKIGFIGGVKG-DIVDAFR 174
Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
+ GY GAKY K ++++ +Y+ +F D + A ++ +G +++ AGL V
Sbjct: 175 Y--GYEAGAKY----ANKGIEIVSEYSNSFSDIDIARVMANKMYSKGIDIIHFAAGLAGV 228
Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVY--DAIKMVVDGTW 296
G+ +A K E G G +G D Q APK S K V A+Y + + D W
Sbjct: 229 GVIEAPK---ELGDG-YYVIGADQDQSHLAPKNFITSVIKNVGDALYLITSESLKNDNVW 284
Query: 297 KGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIK 352
+GG I+ +GL++ VG L +F E+ K+ + K + + +V +E E +IK
Sbjct: 285 EGGKIVQMGLRDGVVG---LSNANEF-EYIKDLER-KIINKEIIVPCNQEGYEIFIK 336
>sp|Q48754|TCSA_LISMO CD4+ T CELL-STIMULATING ANTIGEN PRECURSOR
>gi|7240601|gb|AAB35725.2| (S80336) CD4+ T
cell-stimulating antigen [Listeria monocytogenes]
Length = 268
Score = 89.7 bits (219), Expect = 5e-17
Identities = 69/256 (26%), Positives = 118/256 (45%), Gaps = 19/256 (7%)
Query: 1 MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEA-----KKVKVAILFDVGGRGDLSFNDM 55
M+K AL++ ++ ++ G G ++ K + K VA++ D GG D SFN
Sbjct: 1 MKKRTFALALSMIIASGVILGACGSSSDDKKSSDDKSSKDFTVAMVTDTGGVDDRSFNQS 60
Query: 56 AYLGAERAKKELGVE-----IEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLN 110
A+ G ++ K +E Y+ S+ D K L +S +YDL+ +G+ +
Sbjct: 61 AWEGLQKFGKANDMEKGTDGYNYLQSASEADYKTNLNTAVRS-DYDLIYGIGYKLKDAIE 119
Query: 111 EVADKYPDQKFALIDSTTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAG 170
EV+ + P +FA++D T R+N V I F++ + + L+GV+A G+ + + +G V G
Sbjct: 120 EVSKQKPKNQFAIVDDTIDD-RDNVVSIGFKDNDGSYLVGVVA-GLTTKT--NKVGFVGG 175
Query: 171 MDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLY 230
+ + +F G+ G K V QY F G A + G V++
Sbjct: 176 VKGTVIDRFEAGFTAGVKAVNPNAQIDV----QYANDFAKADKGQQIASSMYSSGVDVIF 231
Query: 231 GLAGLTHVGMFDAVKD 246
AG T G+F K+
Sbjct: 232 HAAGGTGNGVFAEAKN 247
>emb|CAA65881.1| (X97242) membrane protein A [Borrelia garinii]
Length = 264
Score = 88.5 bits (216), Expect = 1e-16
Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 16/250 (6%)
Query: 37 KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
KV+++ D G D SFN+ A G ++ K+E E+ + S LE L +
Sbjct: 16 KVSLIID-GTFDDKSFNESALNGIKKVKEEFKFEL-VLKESSTNSYLSDLEGLKDAGS-S 72
Query: 97 LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
L+ L+G+ + V+ + P+ K+A+ID + N V + FR QE A L G IA+
Sbjct: 73 LIWLIGYKFGDVAKAVSLQNPEMKYAIIDPVYSDEPIPTNLVGMTFRSQEGAFLTGYIAA 132
Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
++ +G +AG + F GY GAKY K +K+ Y G+F D + G
Sbjct: 133 KVSKTSKIGFLGGIAGEIVDA---FRYGYEAGAKY----ANKDIKISTHYIGSFADLEAG 185
Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
+ A ++ G +++ AGL +G + K E G G + +G D Q + AP +
Sbjct: 186 RSVATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVIT 241
Query: 275 SGAKRVDVAV 284
S K V A+
Sbjct: 242 SSTKDVGRAL 251
>emb|CAA65875.1| (X97236) membrane protein A [Borrelia garinii]
Length = 264
Score = 83.5 bits (203), Expect = 4e-15
Identities = 73/263 (27%), Positives = 124/263 (46%), Gaps = 23/263 (8%)
Query: 22 CIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKED 81
C G G+ E+ KV+++ D G D SFN+ A G ++ K+E +E+ +
Sbjct: 4 CSGKGS---LESGISKVSVIID-GTFDDKSFNESALNGIKKVKEEFKIELVL----KESS 55
Query: 82 MKPLLEQLAQSKEY--DLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTGKVRENEVD 137
+ L L K+ +L+ L+G+ ++ V+ + + K+A+ID + + N V
Sbjct: 56 INSYLSDLEGLKDAGSNLIWLIGYKFSDVAKAVSLQNSEIKYAIIDPIYSDEPIPANLVG 115
Query: 138 ILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKP 197
+ FR QE A L G IA+ ++ IG + G++ + F GY GAKY K
Sbjct: 116 MTFRAQEGAFLTGYIAAKVSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKD 168
Query: 198 VKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALA 257
+ + Y G+F D + G + A ++ G +++ AGL +G + K E G G +
Sbjct: 169 INISAHYIGSFADLEAGRSIATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI- 224
Query: 258 MGQDASQEWYAPKYIPISGAKRV 280
+G D Q + AP + S K V
Sbjct: 225 IGVDEDQSYLAPNNVITSATKDV 247
>emb|CAA65882.1| (X97243) membrane protein A [Borrelia garinii]
Length = 243
Score = 82.3 bits (200), Expect = 9e-15
Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 16/238 (6%)
Query: 37 KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
KV+++ + G D SFN+ A G ++ K+E +E+ + S LE L + +
Sbjct: 16 KVSVIVN-GTFDDKSFNESALNGIKKVKEEFKIEL-VLKESSTNFYLSDLEGLKDAGS-N 72
Query: 97 LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
L+ L+G+ ++ V+ + D K+A+ID + + N V + FR QE A L G IA+
Sbjct: 73 LIWLIGYRFSDVAKAVSLQNSDIKYAIIDPVYSEEPIPTNLVGMTFRAQEGAFLTGYIAA 132
Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
++ IG + G++ + F GY GAKY K +K+ Y G+F D + G
Sbjct: 133 KVSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKDIKISAHYIGSFSDVEAG 185
Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYI 272
+ A ++ G +++ AGL +G + K E G G + +G D Q + AP +
Sbjct: 186 RSVATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNV 239
>pir||I40243 bmpC protein - Lyme disease spirochete
>gi|1753224|gb|AAC44711.1|AAC44711 (U49938) membrane
lipoprotein BmpC [Borrelia burgdorferi]
>gi|9837524|gb|AAG00583.1|AF288609_2 (AF288609) BmpC
[Borrelia burgdorferi] >gi|1092537|prf||2024249A
membrane lipoprotein [Borrelia burgdorferi]
Length = 353
Score = 70.2 bits (169), Expect = 4e-11
Identities = 85/357 (23%), Positives = 159/357 (43%), Gaps = 60/357 (16%)
Query: 32 EAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI--EYMTPKSKEDMKPLLEQL 89
++ KV V +L G D +N + G + + G+++ + + P E + L
Sbjct: 26 KSDKVVVGVLAH-GSFYDKGYNQSVHDGVVKLRDNFGIKLITKSLRPYPIEGKRLLTVDE 84
Query: 90 AQSKE--------YDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTG---KVRENEVDI 138
A +++ +L L+G+ ++ +++ + PD + +ID+ +V +N + I
Sbjct: 85 AMTEDAYEVQKNPLNLFWLIGYRFSDLSVKLSYERPDIYYGIIDAFDYGDIQVPKNSLAI 144
Query: 139 LFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPV 198
FR +EAA L G IA+ M+ + + IG + G L F G+ G Y K +
Sbjct: 145 KFRNEEAAFLAGYIAAKMSRK---EKIGFLTGPMSEHLKDFKFGFKAGIFYANPK----L 197
Query: 199 KLLWQYTGTFGDTQVGYNTAMQLLQQG-AKVLYGLAGLTHVGMFDAVKDWNEQGRGKALA 257
+L+ + + D + G A+ + ++ V++ +AG+T +G++DA K+ K
Sbjct: 198 RLVSKKAPSLFDKEKGKAMALFMYKEDKVGVIFPIAGITGLGVYDAAKELGP----KYYV 253
Query: 258 MGQDASQEWYAPKYIPISGAKRVDVAVYD-AIKMVVDGTWKGG-IITLGLKENGVGYWDL 315
+G + Q + AP+ + S K + +Y + + + + +KGG II GLKE +
Sbjct: 254 IGLNQDQSYIAPQNVITSIIKDIGKVIYSISSEYINNRVFKGGIIIDRGLKEGVI----- 308
Query: 316 DGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVHELEEKIKSGEIV 372
E K+ L + DEV+ +LE KI SGEI+
Sbjct: 309 -------EIVKDPDVLNNRLVDEVI--------------------DLENKIISGEII 338
>sp|O50169|BMPC_BORBU BASIC MEMBRANE PROTEIN C PRECURSOR >gi|7447860|pir||G70147 basic
membrane protein C (bmpC) - Lyme disease spirochete
>gi|2688280|gb|AAC66756.1| (AE001143) basic membrane
protein C (bmpC) [Borrelia burgdorferi]
Length = 353
Score = 69.1 bits (166), Expect = 9e-11
Identities = 84/357 (23%), Positives = 159/357 (44%), Gaps = 60/357 (16%)
Query: 32 EAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI--EYMTPKSKEDMKPLLEQL 89
++ KV V +L G D +N + G + + G+++ + + P E + L
Sbjct: 26 KSDKVVVGVLAH-GSFYDKGYNQSVHDGVVKLRDNFGIKLITKSLRPYPIEGKRLLTVDE 84
Query: 90 AQSKE--------YDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTG---KVRENEVDI 138
A +++ +L L+G+ ++ +++ + PD + +ID+ +V +N + I
Sbjct: 85 AMTEDAYEVQKNPLNLFWLIGYRFSDLSVKLSYERPDIYYGIIDAFDYGDIQVPKNSLAI 144
Query: 139 LFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPV 198
FR +EAA L G IA+ M+ + + IG + G + F G+ G Y K +
Sbjct: 145 KFRNEEAAFLAGYIAAKMSRK---EKIGFLTGPMSEHVKDFKFGFKAGIFYANPK----L 197
Query: 199 KLLWQYTGTFGDTQVGYNTAMQLLQQG-AKVLYGLAGLTHVGMFDAVKDWNEQGRGKALA 257
+L+ + + D + G A+ + ++ V++ +AG+T +G++DA K+ K
Sbjct: 198 RLVSKKAPSLFDKEKGKAMALFMYKEDKVGVIFPIAGITGLGVYDAAKELGP----KYYV 253
Query: 258 MGQDASQEWYAPKYIPISGAKRVDVAVYD-AIKMVVDGTWKGG-IITLGLKENGVGYWDL 315
+G + Q + AP+ + S K + +Y + + + + +KGG II GLKE +
Sbjct: 254 IGLNQDQSYIAPQNVITSIIKDIGKVIYSISSEYINNRVFKGGIIIDRGLKEGVI----- 308
Query: 316 DGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVHELEEKIKSGEIV 372
E K+ L + DEV+ +LE KI SGEI+
Sbjct: 309 -------EIVKDPDVLNNRLVDEVI--------------------DLENKIISGEII 338
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.137 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154913363
Number of Sequences: 2977
Number of extensions: 6879792
Number of successful extensions: 20576
Number of sequences better than 1.0e-10: 39
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 20460
Number of HSP's gapped (non-prelim): 40
length of query: 404
length of database: 189,106,746
effective HSP length: 56
effective length of query: 348
effective length of database: 155,591,474
effective search space: 54145832952
effective search space used: 54145832952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)