BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB0302 (tmpC-like) DE:MEMBRANE LIPOPROTEIN (TMPC)
         (404 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75161 membrane lipoprotein (tmpc) PAB0302 - Pyrococcus aby...   818  0.0
sp|O59403|YH14_PYRHO HYPOTHETICAL LIPOPROTEIN PH1714 PRECURSOR >...   760  0.0
pir||A72494 hypothetical protein APE2592 - Aeropyrum pernix (str...   411  e-114
pir||F72418 basic membrane protein - Thermotoga maritima (strain...   161  2e-38
emb|CAC14304.1| (AJ276209) putative substrate binding lipoprotei...   159  4e-38
gb|AAG19338.1| (AE005028) Vng0903c [Halobacterium sp. NRC-1]          146  5e-34
sp|O05252|YUFN_BACSU HYPOTHETICAL LIPOPROTEIN YUFN PRECURSOR >gi...   127  3e-28
gb|AAG19258.1| (AE005021) ABC transporter (lipoprotein); YufN [H...   123  4e-27
gb|AAC44712.1|AAC44712 (U49938) membrane lipoprotein BmpA [Borre...   110  2e-23
gb|AAG00584.1|AF288609_3 (AF288609) BmpA [Borrelia burgdorferi]       110  2e-23
sp|Q45010|BMPA_BORBU BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNOD...   109  4e-23
gb|AAD21046.1| (AF116774) immunodominant antigen P39 [Borrelia b...   109  6e-23
emb|CAA65879.1| (X97240) membrane protein A [Borrelia burgdorferi]    108  2e-22
emb|CAA57235.1| (X81515) bmpA(p39,ORF1) [Borrelia burgdorferi]        106  4e-22
emb|CAA65874.1| (X97235) membrane protein A [Borrelia burgdorferi]    106  5e-22
sp|P29724|TMPC_TREPA MEMBRANE LIPOPROTEIN TMPC PRECURSOR (MEMBRA...   104  1e-21
sp|O31280|BMPA_BORAF BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNOD...   104  1e-21
emb|CAA57236.1| (X81516) bmpA(p39,ORF1) [Borrelia burgdorferi]        104  2e-21
sp|Q45011|BMPB_BORBU BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2120...   104  2e-21
emb|CAA65876.1| (X97237) membrane protein A [Borrelia afzelii]        103  3e-21
pir||H75318 membrane lipoprotein - Deinococcus radiodurans (stra...   103  3e-21
emb|CAA65880.1| (X97241) membrane protein A [Borrelia afzelii]        102  5e-21
emb|CAA57237.1| (X81517) bmpB(p39,ORF2) [Borrelia burgdorferi]        102  5e-21
sp|Q44743|BMPD_BORBU BASIC MEMBRANE PROTEIN D PRECURSOR >gi|1262...   102  7e-21
pir||E70147 basic membrane lipoprotein B (bmpB) - Lyme disease s...   102  7e-21
pir||H70147 basic membrane protein D (bmpD) homolog - Lyme disea...   102  7e-21
pir||A43595 membrane protein C precursor - Treponema pallidum su...   102  9e-21
emb|CAA65878.1| (X97239) membrane protein A [Borrelia afzelii]        102  9e-21
sp|O31357|BMPA_BORGA BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNOD...   101  1e-20
emb|CAA65877.1| (X97238) membrane protein A [Borrelia garinii]        100  3e-20
sp|O31362|BMPB_BORGA BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2598...   100  4e-20
gb|AAG00582.1|AF288609_1 (AF288609) BmpD [Borrelia burgdorferi]       100  5e-20
sp|O31284|BMPB_BORAF BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2598...    92  8e-18
sp|Q48754|TCSA_LISMO CD4+ T CELL-STIMULATING ANTIGEN PRECURSOR >...    90  5e-17
emb|CAA65881.1| (X97242) membrane protein A [Borrelia garinii]         89  1e-16
emb|CAA65875.1| (X97236) membrane protein A [Borrelia garinii]         83  4e-15
emb|CAA65882.1| (X97243) membrane protein A [Borrelia garinii]         82  9e-15
pir||I40243 bmpC protein - Lyme disease spirochete >gi|1753224|g...    70  4e-11
sp|O50169|BMPC_BORBU BASIC MEMBRANE PROTEIN C PRECURSOR >gi|7447...    69  9e-11

>pir||G75161 membrane lipoprotein (tmpc) PAB0302 - Pyrococcus abyssi  (strain
           Orsay) >gi|5457884|emb|CAB49374.1| (AJ248284) MEMBRANE
           LIPOPROTEIN (TMPC) [Pyrococcus abyssi]
           Length = 404
           
 Score =  818 bits (2089), Expect = 0.0
 Identities = 404/404 (100%), Positives = 404/404 (100%)

Query: 1   MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGA 60
           MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGA
Sbjct: 1   MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGA 60

Query: 61  ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK 120
           ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK
Sbjct: 61  ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK 120

Query: 121 FALIDSTTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH 180
           FALIDSTTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH
Sbjct: 121 FALIDSTTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH 180

Query: 181 IGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM 240
           IGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM
Sbjct: 181 IGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM 240

Query: 241 FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI 300
           FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI
Sbjct: 241 FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI 300

Query: 301 ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVH 360
           ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVH
Sbjct: 301 ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVH 360

Query: 361 ELEEKIKSGEIVFKTPKTHEEYEQIIRELEKGNLNAALEKGSVE 404
           ELEEKIKSGEIVFKTPKTHEEYEQIIRELEKGNLNAALEKGSVE
Sbjct: 361 ELEEKIKSGEIVFKTPKTHEEYEQIIRELEKGNLNAALEKGSVE 404


>sp|O59403|YH14_PYRHO HYPOTHETICAL LIPOPROTEIN PH1714 PRECURSOR >gi|7519252|pir||E71179
           hypothetical protein PH1714 - Pyrococcus horikoshii
           >gi|3258145|dbj|BAA30828.1| (AP000007) 405aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 405
           
 Score =  760 bits (1941), Expect = 0.0
 Identities = 373/404 (92%), Positives = 391/404 (96%), Gaps = 2/404 (0%)

Query: 3   KLGLALSIMGLLLVSIVAGCIGGGTETKTEA--KKVKVAILFDVGGRGDLSFNDMAYLGA 60
           K  LALSI+GL+L S+VAGCIGGGT+T+T+   K +KVAILFDVGGRGDLSFNDMAYLGA
Sbjct: 2   KAKLALSIIGLVLASLVAGCIGGGTQTQTQTQGKSIKVAILFDVGGRGDLSFNDMAYLGA 61

Query: 61  ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK 120
           ERAKKELGV+IEYMTPKSKEDM PLLEQLA+SKEYDLLVLVGFLWT+PLNEVADKYPDQK
Sbjct: 62  ERAKKELGVKIEYMTPKSKEDMVPLLEQLAKSKEYDLLVLVGFLWTTPLNEVADKYPDQK 121

Query: 121 FALIDSTTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH 180
           FALIDSTTGKVR NEVDILFREQE AALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH
Sbjct: 122 FALIDSTTGKVRPNEVDILFREQEVAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFH 181

Query: 181 IGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM 240
           IGYLFGAKYFEKKTGK VKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM
Sbjct: 182 IGYLFGAKYFEKKTGKHVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGM 241

Query: 241 FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI 300
           FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI
Sbjct: 242 FDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGI 301

Query: 301 ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVH 360
           ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVV+IVK+QREKYIKPYVW+IV+
Sbjct: 302 ITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVEIVKQQREKYIKPYVWEIVN 361

Query: 361 ELEEKIKSGEIVFKTPKTHEEYEQIIRELEKGNLNAALEKGSVE 404
           EL EKIK+GEIVFKTPK+H+EYEQII ELEKGNLNAAL+KGSVE
Sbjct: 362 ELAEKIKNGEIVFKTPKSHDEYEQIINELEKGNLNAALKKGSVE 405


>pir||A72494 hypothetical protein APE2592 - Aeropyrum pernix (strain K1)
           >gi|5106298|dbj|BAA81609.1| (AP000064) 470aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 470
           
 Score =  411 bits (1045), Expect = e-114
 Identities = 208/377 (55%), Positives = 278/377 (73%), Gaps = 7/377 (1%)

Query: 29  TKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQ 88
           T  +A+ + V +LFDVGGRGDLSFNDMA LGA+RA +ELGV++ + TP+S   M+ +L+ 
Sbjct: 94  TTEQARPISVLVLFDVGGRGDLSFNDMAALGADRAAEELGVDVVFQTPQSLAVMESVLDA 153

Query: 89  LAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVRENEVDILFREQEAAAL 148
            ++S EYDL+VLVGFLW  PL +VA +YP+QK+ALID+ T +  +N    LFREQE A+L
Sbjct: 154 ASRSGEYDLIVLVGFLWQEPLEKVAPRYPEQKYALIDAATRERYDNVASYLFREQEVASL 213

Query: 149 MGVIASGMAYELGGDT-----IGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQ 203
           +G+IA+ +A  +   T      GAVAGMDIPPLW+FHIGYL+G +Y+ +  G  V+++W 
Sbjct: 214 VGIIAADIANNISKATGEEAKAGAVAGMDIPPLWRFHIGYLYGVQYYNQAMGTDVEMVWT 273

Query: 204 YTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDAS 263
           YTG F D  +G  TA Q+LQQG +V YG+AGLTHVGMF+AVK+   +G   A ++GQDAS
Sbjct: 274 YTGRFDDPTLGKTTAEQMLQQGVRVFYGVAGLTHVGMFNAVKEAAARG-VIAFSIGQDAS 332

Query: 264 QEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGIITLGLKENGVGYWDLDGVKQFAE 323
           QEWY P+ I ISG KRVDVAVY AIK VV+G ++GGI++LGLKE G+G  D + ++ FAE
Sbjct: 333 QEWYDPQTIIISGLKRVDVAVYTAIKDVVEGRFRGGIVSLGLKEGGLGLSDEEIIRYFAE 392

Query: 324 FAKEAGKLKD-MTPDEVVQIVKEQREKYIKPYVWDIVHELEEKIKSGEIVFKTPKTHEEY 382
            A E G+L + +TP++VV+IV  QREK+I    W +V EL++KI SGEI F TP+ H+ Y
Sbjct: 393 IAAETGQLPEGLTPEKVVEIVMSQREKWISNDGWRLVEELKQKIISGEIKFVTPQDHDTY 452

Query: 383 EQIIRELEKGNLNAALE 399
           + II EL+ GNL AALE
Sbjct: 453 DSIIEELKAGNLEAALE 469


>pir||F72418 basic membrane protein - Thermotoga maritima (strain MSB8)
           >gi|4980592|gb|AAD35196.1|AE001696_10 (AE001696) basic
           membrane protein [Thermotoga maritima]
           Length = 359
           
 Score =  161 bits (402), Expect = 2e-38
 Identities = 103/294 (35%), Positives = 156/294 (53%), Gaps = 25/294 (8%)

Query: 37  KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
           KV ++ DVGG GD SFND  + G ++A +ELG+E + +    + D  P L + A+  E D
Sbjct: 20  KVIMVTDVGGLGDKSFNDGTWAGIKQAAEELGIEAKVIQSYEQSDYIPNLSKAAE--EAD 77

Query: 97  LLVLVGFLWTSPLNEVADKYPDQKFALIDSTT--GKVRENEVDILFREQEAAALMGVIAS 154
           L+  VGF+ T+ L +VA +YPD  F  ID T   G++  N +   F+EQEAA L+G +A+
Sbjct: 78  LVFAVGFMMTNDLFKVAKQYPDTYFVGIDITPPEGQILPNVLTFTFKEQEAAFLVGYVAA 137

Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
            M        +G V G+ IPP+ +F  GY  G K +     K VK+L  YT  F D + G
Sbjct: 138 AMTKT---GMVGFVGGIPIPPVERFRYGYEAGIKTYSVLHKKNVKILRGYTQDFEDPKKG 194

Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKD-----------------WNEQGRGKALA 257
            + AM    +GA +++  +G    G+ +A ++                 +   G+G   A
Sbjct: 195 KDLAMSQFAEGADIVFHASGACGNGVIEAAREKFSALAGSDKLVDLIDYYTTNGKG-FFA 253

Query: 258 MGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGGIITLGLKENGVG 311
           +G D  Q++ AP  +  S  KRVDVA Y  +    +GT++GG   LG+ E+ VG
Sbjct: 254 IGVDMDQDYMAPGAVLTSAMKRVDVASYYGVVWAYEGTFEGGHRVLGISEDAVG 307


>emb|CAC14304.1| (AJ276209) putative substrate binding lipoprotein precursor of an
           ABC transporter [Clostridium sticklandii]
           Length = 349
           
 Score =  159 bits (399), Expect = 4e-38
 Identities = 113/361 (31%), Positives = 177/361 (48%), Gaps = 39/361 (10%)

Query: 1   MRKLGLALSIMGLLLVSIVAGCIGGGTET--------KTEAKKVKVAILFDVGGRGDLSF 52
           M+K   AL +  ++ +  +AGC     ET        +T A+ +K++++ DVGG  D SF
Sbjct: 1   MKKRITALFLASIMGIMTLAGCSSAPAETPAEEPAAEETAAESLKISMVTDVGGVKDQSF 60

Query: 53  NDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEV 112
           N  A+ G E+AK +LG+EI Y+  K   D +P LE L    E DL+  VGF     +   
Sbjct: 61  NQSAWEGLEKAKADLGIEIGYIESKQDADYEPNLETLVDG-ENDLIWGVGFKMADAILAA 119

Query: 113 ADKYPDQKFALIDST-TGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGM 171
           A  YP+QK+A+ID+       +N + +LF+E+E + L+G+IA  M      + IG + GM
Sbjct: 120 AGNYPEQKYAIIDNDYADATPDNVLGVLFKEEEPSYLVGLIAGKMTQ---SNKIGFIGGM 176

Query: 172 DIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYG 231
           D+P + +F  G+L G K         V    Q+   F D   G   A Q+   G  +++ 
Sbjct: 177 DVPVINRFRFGFLAGVKAANPDAVVDV----QFVNAFNDPAKGKAVANQMYASGVDIIFH 232

Query: 232 LAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMV 291
            AG +  G  +A K+ N+        +G D  Q   AP  +  S  KRVD A+++  K +
Sbjct: 233 AAGDSGNGAIEAAKEQNK------WVIGVDRDQNDLAPDNVITSAVKRVDNAMFNVAKEL 286

Query: 292 VDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKY 350
            DG + GG  I  GL E GV            + A    K     P ++++ V+ +++K 
Sbjct: 287 KDGNFAGGTTIVFGLAEGGV------------DIAPTTSK---NVPADILEFVEAEKQKI 331

Query: 351 I 351
           I
Sbjct: 332 I 332


>gb|AAG19338.1| (AE005028) Vng0903c [Halobacterium sp. NRC-1]
           Length = 349
           
 Score =  146 bits (364), Expect = 5e-34
 Identities = 102/313 (32%), Positives = 150/313 (47%), Gaps = 30/313 (9%)

Query: 12  GLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
           G +  S+VAGC  GG    T     KV  ++  GG GD SFND A  G ERAKKEL +  
Sbjct: 15  GTVGASLVAGCSSGGGGGDT----TKVGTVYGTGGLGDGSFNDQAKQGLERAKKELDITY 70

Query: 72  EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKV 131
           E   P++  +     +Q AQ   +DL+  VG+     L   A  +PDQ++AL+D T    
Sbjct: 71  EESQPENNSEFATDQQQYAQDGSFDLVNCVGYAQKDALATNAADFPDQRWALVDETVD-- 128

Query: 132 RENEVDILFREQEAAALMGVIASGM----------AYELGGDTIGAVAGMDIPPLWKFHI 181
           ++N     FRE+  + L+G +A  +          A      T+G V G++ P + KF  
Sbjct: 129 QDNVASYRFREEAGSYLVGELAGLLTQREFSAGSGATNPDAATVGFVGGIETPLIKKFEA 188

Query: 182 GYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMF 241
           G+  G         + + +L  Y G+F D   G + A  +   GA ++Y  +  T  G+F
Sbjct: 189 GFTAGV----NDVSEDIDVLSSYVGSFNDPSAGQSQARSMFNSGADIIYHASAATGDGVF 244

Query: 242 DAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI---SGAKRVDVAVYDAIKMVVDGTWKG 298
            A +D          A+G D  Q      +  +   S  KRVD AVY+AI  V +G + G
Sbjct: 245 RAAQDIGR------FAIGVDRDQSVTKSDFADVVLASMVKRVDTAVYNAINAVANGNFAG 298

Query: 299 GIIT-LGLKENGV 310
           G  T LGL+++GV
Sbjct: 299 GETTRLGLEDDGV 311


>sp|O05252|YUFN_BACSU HYPOTHETICAL LIPOPROTEIN YUFN PRECURSOR >gi|7429430|pir||C70009 ABC
           transporter (lipoprotein) homolog yufN - Bacillus
           subtilis >gi|1934811|emb|CAB07936.1| (Z93937) unknown
           [Bacillus subtilis] >gi|2635650|emb|CAB15143.1| (Z99120)
           similar to ABC transporter (lipoprotein) [Bacillus
           subtilis]
           Length = 350
           
 Score =  127 bits (315), Expect = 3e-28
 Identities = 105/316 (33%), Positives = 149/316 (46%), Gaps = 34/316 (10%)

Query: 18  IVAGCIGG--GTETKTEAK-----KVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVE 70
           I AG I G  G   K+        K  VA++ DVGG  D SFN  A+ G +   KE G++
Sbjct: 5   IAAGTILGACGNSEKSSGSGEGKNKFSVAMVTDVGGVDDKSFNQSAWEGIQAFGKENGLK 64

Query: 71  -----IEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALID 125
                 +Y+  KS  D    L +LA+ + +DL+  VG+L    ++E+AD+  +  FA+ID
Sbjct: 65  KGKNGYDYLQSKSDADYTTNLNKLAR-ENFDLIYGVGYLMEDSISEIADQRKNTNFAIID 123

Query: 126 STTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLF 185
           +   K  +N   I F+EQE + L+GV A   A       IG V GM+   + KF +G+  
Sbjct: 124 AVVDK--DNVASITFKEQEGSFLVGVAA---ALSSKSGKIGFVGGMESELIKKFEVGFRA 178

Query: 186 GAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVK 245
           G +    K    VK    Y G F    VG  TA  + + G  V+Y  AG T  G+F   K
Sbjct: 179 GVQAVNPKAVVEVK----YAGGFDKADVGKATAESMYKSGVDVIYHSAGATGTGVFTEAK 234

Query: 246 DW-NEQGRGKALAMGQDASQEWYAPKYIP--------ISGAKRVDVAVYDAIKMVVDGTW 296
           +   E  +     +G D  Q  YA   +          S  K+VD  V D  K   DG +
Sbjct: 235 NLKKEDPKRDVWVIGVDKDQ--YAEGQVEGTDDNVTLTSMVKKVDTVVEDVTKKASDGKF 292

Query: 297 KGG-IITLGLKENGVG 311
            GG  +T GL ++GVG
Sbjct: 293 PGGETLTYGLDQDGVG 308


>gb|AAG19258.1| (AE005021) ABC transporter (lipoprotein); YufN [Halobacterium sp.
           NRC-1]
           Length = 322
           
 Score =  123 bits (305), Expect = 4e-27
 Identities = 101/328 (30%), Positives = 144/328 (43%), Gaps = 41/328 (12%)

Query: 40  ILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKE--YDL 97
           +++ +GG  D SFND A  GA+RA+ + G+      P S  ++      LA S    YDL
Sbjct: 1   MVYALGGLDDRSFNDAANRGAQRARLDHGIAYTNHEPDSIAELGETQATLAASSNPAYDL 60

Query: 98  LVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVRENEVDILFREQ-------EAAALM- 149
           +  VGF     L   A   PDQ+F ++D  T     N    +F EQ         AAL+ 
Sbjct: 61  VCCVGFRQADGLESAAAAAPDQQFMIVD--TAVDASNVASYVFEEQTGSFQAGRLAALLT 118

Query: 150 --GVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGT 207
              + A G A      T+G V G+D P    FH G+  G  +    T   + +L  Y G 
Sbjct: 119 TRDIDAGGGATNPDARTVGFVGGVDEPLTHGFHAGFQAGVTH----TASDIDVLAAYIGD 174

Query: 208 FGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWY 267
           F D +     A  +   GA ++Y  AG   VG+  A      Q  G+  A+G D+ Q   
Sbjct: 175 FEDVEAARTAAAAMYDAGADIVYHAAGGAGVGVLQAA-----QANGR-YAIGVDSDQSRS 228

Query: 268 APKYIPI---SGAKRVDVAVYDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAE 323
            P+Y  +   S  KR+D AVYDAI+  +DG    G +++LGL  NGV             
Sbjct: 229 NPRYADVVLASMVKRIDTAVYDAIEATIDGDLPAGDVVSLGLATNGVS------------ 276

Query: 324 FAKEAGKLKDMTPDEVVQIVKEQREKYI 351
             +   +L    PD V   + E RE  +
Sbjct: 277 -VQYGTQLGPAIPDAVTDALGETREALV 303


>gb|AAC44712.1|AAC44712 (U49938) membrane lipoprotein BmpA [Borrelia burgdorferi]
           Length = 339
           
 Score =  110 bits (273), Expect = 2e-23
 Identities = 103/350 (29%), Positives = 168/350 (47%), Gaps = 25/350 (7%)

Query: 13  LLLVSIV-AGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
           +LL SIV   C G G+     ++  KV+++ D G   D SFN+ A  G ++ K+E  +E+
Sbjct: 8   ILLESIVFLSCSGKGS---LGSEIPKVSLIID-GTFDDKSFNESALNGVKKVKEEFKIEL 63

Query: 72  EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTG 129
                 S   +  L E L  +   DL+ L+G+ ++      A + PD K+A+ID   +  
Sbjct: 64  VLKESSSNSYLSDL-EGLKDAGS-DLIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSND 121

Query: 130 KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKY 189
            +  N V + FR QE A L G IA+ ++       IG + G++   +  F  GY  GAKY
Sbjct: 122 PIPANLVGMTFRAQEGAFLTGYIAAKLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY 178

Query: 190 FEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNE 249
                 K +K+  QY G+F D + G + A ++      +++  AGL  +G  +  K   E
Sbjct: 179 ----ANKDIKISTQYIGSFADLEAGRSVATRMYSDEIDIIHHAAGLGGIGAIEVAK---E 231

Query: 250 QGRGKALAMGQDASQEWYAPKYIPISGAKRVDVA--VYDAIKMVVDGTWKGGIITLGLKE 307
            G G  + +G D  Q + AP  +  S  K V  A  ++ +  +  + +  G +I  GLKE
Sbjct: 232 LGSGHYI-IGVDEDQAYLAPDNVITSTTKDVGRALNIFTSNHLKTNTSEGGKLINYGLKE 290

Query: 308 NGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
             VG+     +  F E  KE   L  K +  + +V   KE  EK++K ++
Sbjct: 291 GVVGFVRNPKMISF-ELEKEIDNLSSKIINKEIIVPSNKESYEKFLKEFI 339


>gb|AAG00584.1|AF288609_3 (AF288609) BmpA [Borrelia burgdorferi]
           Length = 339
           
 Score =  110 bits (273), Expect = 2e-23
 Identities = 105/350 (30%), Positives = 168/350 (48%), Gaps = 25/350 (7%)

Query: 13  LLLVSIV-AGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
           +LL SIV   C G G+     ++  KV+++ D G   D SFN+ A  G ++ K+E  +E+
Sbjct: 8   ILLESIVFLSCSGKGS---LGSEIPKVSLIID-GTFDDKSFNESALNGVKKVKEEFKIEL 63

Query: 72  EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTG 129
                 S   +  L E L  +   DL+ L+G+ ++      A + PD K+A+ID   +  
Sbjct: 64  VLKESSSNSYLSDL-EGLKDAGS-DLIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSND 121

Query: 130 KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKY 189
            +  N V + FR QE A L G IA+ ++       IG + G++   +  F  GY  GAKY
Sbjct: 122 PIPANLVGMTFRAQEGAFLTGYIAARLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY 178

Query: 190 FEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNE 249
                 K +K+  QY G+F D + G + A ++      +++  AGL  +G  +  K   E
Sbjct: 179 ----ANKDIKIFTQYIGSFADLEAGRSVATRMYSDEIDIIHHAAGLGGIGAIEVAK---E 231

Query: 250 QGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKE 307
            G G  + +G D  Q + AP  +  S  K V  A+       +   T++GG +I  GLKE
Sbjct: 232 LGSGHYI-IGVDEDQAYLAPDNVITSTTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKE 290

Query: 308 NGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
             VG+     +  F E  KE   L  K +  + +V   KE  EK++K ++
Sbjct: 291 GVVGFVRNPKMISF-ELEKEIDNLSSKIINKEIIVPSNKESYEKFLKEFI 339


>sp|Q45010|BMPA_BORBU BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNODOMINANT ANTIGEN P39)
           >gi|2120444|pir||I40289 membrane lipoprotein A - Lyme
           disease spirochete >gi|7447862|pir||F70147 basic
           membrane protein A (bmpA) - Lyme disease spirochete
           >gi|508421|gb|AAA72406.1| (L24194) antigen P39 [Borrelia
           burgdorferi] >gi|2688281|gb|AAC66757.1| (AE001143) basic
           membrane protein A (bmpA) [Borrelia burgdorferi]
           Length = 339
           
 Score =  109 bits (271), Expect = 4e-23
 Identities = 105/350 (30%), Positives = 168/350 (48%), Gaps = 25/350 (7%)

Query: 13  LLLVSIV-AGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
           +LL SIV   C G G+     ++  KV+++ D G   D SFN+ A  G ++ K+E  +E+
Sbjct: 8   ILLESIVFLSCSGKGS---LGSEIPKVSLIID-GTFDDKSFNESALNGVKKVKEEFKIEL 63

Query: 72  EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTG 129
                 S   +  L E L  +   DL+ L+G+ ++      A + PD K+A+ID   +  
Sbjct: 64  VLKESSSNSYLSDL-EGLKDAGS-DLIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSND 121

Query: 130 KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKY 189
            +  N V + FR QE A L G IA+ ++       IG + G++   +  F  GY  GAKY
Sbjct: 122 PIPANLVGMTFRAQEGAFLTGYIAAKLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY 178

Query: 190 FEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNE 249
                 K +K+  QY G+F D + G + A ++      +++  AGL  +G  +  K   E
Sbjct: 179 ----ANKDIKISTQYIGSFADLEAGRSVATRMYSDEIDIIHHAAGLGGIGAIEVAK---E 231

Query: 250 QGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKE 307
            G G  + +G D  Q + AP  +  S  K V  A+       +   T++GG +I  GLKE
Sbjct: 232 LGSGHYI-IGVDEDQAYLAPDNVITSTTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKE 290

Query: 308 NGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
             VG+     +  F E  KE   L  K +  + +V   KE  EK++K ++
Sbjct: 291 GVVGFVRNPKMISF-ELEKEIDNLSSKIINKEIIVPSNKESYEKFLKEFI 339


>gb|AAD21046.1| (AF116774) immunodominant antigen P39 [Borrelia burgdorferi]
           Length = 339
           
 Score =  109 bits (270), Expect = 6e-23
 Identities = 105/350 (30%), Positives = 168/350 (48%), Gaps = 25/350 (7%)

Query: 13  LLLVSIV-AGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
           +LL SIV   C G G+     ++  KV+++ D G   D SFN+ A  G ++ K+E  +E+
Sbjct: 8   ILLESIVFLSCSGKGS---LGSEIPKVSLIID-GTFDDKSFNESALNGVKKVKEEFKIEL 63

Query: 72  EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTG 129
                 S   +  L E L  +   DL+ L+G+ ++      A + PD K+A+ID   +  
Sbjct: 64  VLEESSSNSYLSDL-EGLKDAGS-DLIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSND 121

Query: 130 KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKY 189
            +  N V + FR QE A L G IA+ ++       IG + G++   +  F  GY  GAKY
Sbjct: 122 PIPANLVGMTFRAQEGAFLTGYIAAKLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY 178

Query: 190 FEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNE 249
                 K +K+  QY G+F D + G + A ++      +++  AGL  +G  +  K   E
Sbjct: 179 ----ANKDIKISTQYIGSFADLEAGRSVATRMYSDEIDIIHHAAGLGGIGAIEVAK---E 231

Query: 250 QGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKE 307
            G G  + +G D  Q + AP  +  S  K V  A+       +   T++GG +I  GLKE
Sbjct: 232 LGSGHYI-IGVDEDQAYLAPDNVITSTTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKE 290

Query: 308 NGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
             VG+     +  F E  KE   L  K +  + +V   KE  EK++K ++
Sbjct: 291 GVVGFVRNPKMISF-ELEKEIDNLSSKIINKEIIVPSNKESYEKFLKEFI 339


>emb|CAA65879.1| (X97240) membrane protein A [Borrelia burgdorferi]
           Length = 325
           
 Score =  108 bits (266), Expect = 2e-22
 Identities = 97/325 (29%), Positives = 156/325 (47%), Gaps = 21/325 (6%)

Query: 37  KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
           KV+++ D G   D SFN+ A  G ++ K+E  +E+      S   +  L E L  +   D
Sbjct: 16  KVSLIID-GTFDDKSFNESALNGVKKVKEEFKIELVLKESSSNSYLSDL-EGLKDAGS-D 72

Query: 97  LLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTGKVRENEVDILFREQEAAALMGVIAS 154
           L+ L+G+ ++      A + PD K+A+ID   +   +  N V + FR QE A L G IA+
Sbjct: 73  LIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSNDPIPANLVGMTFRAQEGAFLTGYIAA 132

Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
            ++       IG + G++   +  F  GY  GAKY      K +K+  QY G+F D + G
Sbjct: 133 RLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKDIKISTQYIGSFADLEAG 185

Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
            + A ++      +++  AGL  +G  +  K   E G G  + +G D  Q + AP  +  
Sbjct: 186 RSVATRMYSDEIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQAYLAPDNVIT 241

Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
           S  K V  A+       +   T++GG +I  GLKE  VG+     +  F E  KE   L 
Sbjct: 242 STTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKEGVVGFVRNPKMISF-ELEKEIDNLS 300

Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
            K +  + +V   KE  EK++K ++
Sbjct: 301 SKIINKEIIVPSNKESYEKFLKEFI 325


>emb|CAA57235.1| (X81515) bmpA(p39,ORF1) [Borrelia burgdorferi]
           Length = 339
           
 Score =  106 bits (263), Expect = 4e-22
 Identities = 104/350 (29%), Positives = 167/350 (47%), Gaps = 25/350 (7%)

Query: 13  LLLVSIV-AGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI 71
           +LL SIV   C G G+     ++  KV+++ D G   D SFN+ A  G ++ K+E  +E+
Sbjct: 8   ILLESIVFLSCSGKGS---LGSEIPKVSLIID-GTFDDKSFNESALNGVKKVKEEFKIEL 63

Query: 72  EYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTG 129
                 S   +  L E L  +   DL+ L+G+ ++      A + PD K+A+ID   +  
Sbjct: 64  VLKESSSNSYLSDL-EGLKDAGS-DLIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSND 121

Query: 130 KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKY 189
            +  N V + FR QE A L G IA+ ++       IG + G++   +  F  GY  GAKY
Sbjct: 122 PIPANLVGMTFRAQEGAFLTGYIAAKLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY 178

Query: 190 FEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNE 249
                 K +K+  QY G+F D + G + A ++      +++  A L  +G  +  K   E
Sbjct: 179 ----ANKDIKISTQYIGSFADLEAGRSVATRMYSDEIDIIHHAASLGGIGAIEVPK---E 231

Query: 250 QGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKE 307
            G G  + +G D  Q + AP  +  S  K V  A+       +   T++GG +I  GLKE
Sbjct: 232 LGSGHYI-IGVDEDQAYLAPDNVITSTTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKE 290

Query: 308 NGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
             VG+     +  F E  KE   L  K +  + +V   KE  EK++K ++
Sbjct: 291 GVVGFVRNPKMISF-ELEKEIDNLSSKIINKEIIVPSNKESYEKFLKEFI 339


>emb|CAA65874.1| (X97235) membrane protein A [Borrelia burgdorferi]
           Length = 325
           
 Score =  106 bits (262), Expect = 5e-22
 Identities = 96/325 (29%), Positives = 155/325 (47%), Gaps = 21/325 (6%)

Query: 37  KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
           KV+++ D G   D SFN+ A  G ++ K+E  +E+      S   +  L E L  +   D
Sbjct: 16  KVSLIID-GTFDDKSFNESALNGVKKVKEEFKIELVLKESSSNSYLSDL-EGLKDAGS-D 72

Query: 97  LLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTGKVRENEVDILFREQEAAALMGVIAS 154
           L+ L+G+ ++      A + PD K+A+ID   +   +  N V + FR QE A L G IA+
Sbjct: 73  LIWLIGYRFSDVAKVAALQNPDMKYAIIDPIYSNDPIPANLVGMTFRAQEGAFLTGYIAA 132

Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
            ++       IG + G++   +  F  GY  GAKY      K +K+  QY G+F D + G
Sbjct: 133 RLSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKDIKISTQYIGSFADLEAG 185

Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
            + A ++      +++  AG   +G  +  K   E G G  + +G D  Q + AP  +  
Sbjct: 186 RSVATRMYSDEIDIIHHAAGFGGIGAIEVAK---ELGSGHYI-IGVDEDQAYLAPDNVIT 241

Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
           S  K V  A+       +   T++GG +I  GLKE  VG+     +  F E  KE   L 
Sbjct: 242 STTKDVGRALNIFTSNHLKTNTFEGGKLINYGLKEGVVGFVRNPKMISF-ELEKEIDNLS 300

Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
            K +  + +V   KE  EK++K ++
Sbjct: 301 SKIINKEIIVPSNKESYEKFLKEFI 325


>sp|P29724|TMPC_TREPA MEMBRANE LIPOPROTEIN TMPC PRECURSOR (MEMBRANE PROTEIN C) (35 KD
           ANTIGEN) >gi|7429431|pir||H71340 membrane lipoprotein
           TmpC precursor - syphilis spirochete
           >gi|3322590|gb|AAC65302.1| (AE001211) membrane
           lipoprotein (tmpC) [Treponema pallidum]
           Length = 353
           
 Score =  104 bits (258), Expect = 1e-21
 Identities = 84/311 (27%), Positives = 137/311 (44%), Gaps = 18/311 (5%)

Query: 12  GLLLVSIVAGCIGG-----GTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKE 66
           G+    ++ GC        G     E     V ++ D G   D SFN   + G  R  +E
Sbjct: 11  GVFCAMLLIGCSKSDRPQMGNAGGAEGGDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQE 70

Query: 67  LGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDS 126
              + +Y+T  +  +  P L   A  +   L+V  G      + E + ++P QKF +ID+
Sbjct: 71  NNAKCKYVTASTDAEYVPSLSAFAD-ENMGLVVACGSFLVEAVIETSARFPKQKFLVIDA 129

Query: 127 TTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFG 186
              + R+N V  +F + E + L+GV A+  A E G   +G + GM++  +  F  G+  G
Sbjct: 130 VV-QDRDNVVSAVFGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMPLFEAGFEAG 188

Query: 187 AKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKD 246
            K  +      ++++ +   TF D Q G   A +L   G  V++ +AG T  G+    +D
Sbjct: 189 VKAVD----PDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGGTGNGVIKEARD 244

Query: 247 WNEQGRGKALAMGQDASQEW-----YAPKYIPISGAKRVDVAVYDAIKMVVDGTWKGG-I 300
               G+     +G D  Q        +   +  S  KR DVA     KM  DG++ GG  
Sbjct: 245 RRLNGQ-DVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFPGGQS 303

Query: 301 ITLGLKENGVG 311
           I  GL++  VG
Sbjct: 304 IMFGLEDKAVG 314


>sp|O31280|BMPA_BORAF BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNODOMINANT ANTIGEN P39)
           Length = 339
           
 Score =  104 bits (258), Expect = 1e-21
 Identities = 102/361 (28%), Positives = 172/361 (47%), Gaps = 28/361 (7%)

Query: 1   MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGA 60
           M K+ L +   G++ +S    C G   ++  E+   KV+++ D G   D SFN+ A  G 
Sbjct: 1   MNKILLLILFEGVIFLS----CSG---KSGLESGIPKVSLVID-GTFDDKSFNESALNGV 52

Query: 61  ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK 120
           ++ K+E  +E+  +   S       LE L  +   +L+ L+G+ ++     V+ +  + K
Sbjct: 53  KKLKEEFEIEL-VLKESSTNSYLSDLEGLKDAGS-NLIWLIGYKFSDVAKAVSLQNSEMK 110

Query: 121 FALIDSTTGK--VRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
           +A+ID       +  N V + FR QE A L G IA+ ++       IG + G++   +  
Sbjct: 111 YAIIDPVYSNEPIPANLVGMTFRAQEGAFLTGYIAAKVSKT---GKIGFLGGIEGDIVDA 167

Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
           F  GY  GAKY      K +K+  QY G+F D + G + A ++   G  +++  AGL  +
Sbjct: 168 FRYGYEAGAKY----ANKDIKIFSQYIGSFSDLEAGRSVATKMYSDGIDIIHHAAGLGGI 223

Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWK 297
           G  +  K   E G G  + +G D  Q + AP  +  S  K V  ++       +   T++
Sbjct: 224 GAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVITSTTKDVGRSLNLLTSNYLKTNTFE 279

Query: 298 GG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPY 354
           GG +I  GLKE  VG+     +  F E  KE   L  K +  + +V   KE  EK++K +
Sbjct: 280 GGKLINYGLKEGVVGFVRNPKMIPF-EVEKEIDSLSSKIINKEVIVPYNKESYEKFLKEF 338

Query: 355 V 355
           +
Sbjct: 339 I 339


>emb|CAA57236.1| (X81516) bmpA(p39,ORF1) [Borrelia burgdorferi]
           Length = 339
           
 Score =  104 bits (257), Expect = 2e-21
 Identities = 102/361 (28%), Positives = 172/361 (47%), Gaps = 28/361 (7%)

Query: 1   MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGA 60
           M K+ L +   G++ +S    C G   ++  E+   KV+++ D G   D SFN+ A  G 
Sbjct: 1   MNKILLLILFEGVIFLS----CSG---KSGLESGIPKVSLVID-GTFDDKSFNESALNGV 52

Query: 61  ERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQK 120
           ++ K+E  +E+  +   S       LE L  +   +L+ L+G+ ++     V+ +  + K
Sbjct: 53  KKLKEEFEIEL-VLKESSTNSYLSDLEGLKDAGS-NLIWLIGYKFSDVAKAVSLQNSEMK 110

Query: 121 FALIDSTTGK--VRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
           +A+ID       +  N V + FR QE A L G IA+ ++       IG + G++   +  
Sbjct: 111 YAIIDPVYSNEPIPANLVGMTFRAQEGAFLTGYIAAKVSKT---GKIGFLGGIEGDIVDA 167

Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
           F  GY  GAKY      K +K+  QY G+F D + G + A ++   G  +++  AGL  +
Sbjct: 168 FRYGYEAGAKY----ANKDIKIFSQYIGSFSDLEAGRSVATKMYSDGIDIIHHAAGLGGI 223

Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWK 297
           G  +  K   E G G  + +G D  Q + AP  +  S  K V  ++       +   T++
Sbjct: 224 GAIEVPK---ELGSGHYI-IGVDEDQSYLAPNNVITSTTKDVGRSLNLFTSNYLKTNTFE 279

Query: 298 GG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPY 354
           GG +I  GLKE  VG+     +  F E  KE   L  K +  + +V   KE  EK++K +
Sbjct: 280 GGKLINYGLKEGVVGFVRNPKMIPF-EVEKEIDSLSSKIINKEVIVPYNKESYEKFLKEF 338

Query: 355 V 355
           +
Sbjct: 339 I 339


>sp|Q45011|BMPB_BORBU BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2120441|pir||I40290
           hypothetical protein - Lyme disease spirochete
           >gi|508422|gb|AAA72407.1| (L24194) [Borrelia burgdorferi
           immunodominant antigen P39 gene, complete cds.], gene
           products >gi|1753226|gb|AAC44713.1|AAC44713 (U49938)
           membrane lipoprotein BmpB [Borrelia burgdorferi]
           Length = 341
           
 Score =  104 bits (256), Expect = 2e-21
 Identities = 98/359 (27%), Positives = 174/359 (48%), Gaps = 37/359 (10%)

Query: 6   LALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKK 65
           + + I G+LL S  +     G E+ +  KK+K+++L D G   D SFN  A     R KK
Sbjct: 3   IVIFIFGILLTSCFSR---NGIESSS--KKIKISMLVD-GVLDDKSFNSSANEALLRLKK 56

Query: 66  ELGVEIEYMTPKSKEDMKPL----LEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKF 121
           +    IE +   +   +       L+ L ++   DL+ LVG++ T     V+ + P   +
Sbjct: 57  DFPENIEEVFSCAISGVYSSYVSDLDNLKRNGS-DLIWLVGYMLTDASLLVSSENPKISY 115

Query: 122 ALIDSTTG---KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
            +ID   G   ++ EN + ++FR ++ A L G IA+  ++      IG + GM    +  
Sbjct: 116 GIIDPIYGDDVQIPENLIAVVFRVEQGAFLAGYIAAKKSFS---GKIGFIGGMKGNIVDA 172

Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
           F  GY  GAKY      K ++++ +Y+ +F D  +G   A ++  +G  V++  AGL  +
Sbjct: 173 FRYGYESGAKY----ANKDIEIISEYSNSFSDVDIGRTIASKMYSKGIDVIHFAAGLAGI 228

Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVY----DAIKMVVDG 294
           G+ +A K+  +        +G D  Q + APK    S  K +  A+Y    + IK   + 
Sbjct: 229 GVIEAAKNLGD----GYYVIGADQDQSYLAPKNFITSVIKNIGDALYLITGEYIKN--NN 282

Query: 295 TWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIK 352
            W+GG ++ +GL++  +G   L    +F E+ K   + K +  + +V   +E+ E +IK
Sbjct: 283 VWEGGKVVQMGLRDGVIG---LPNANEF-EYIKVLER-KIVNKEIIVPCNQEEYEIFIK 336


>emb|CAA65876.1| (X97237) membrane protein A [Borrelia afzelii]
           Length = 325
           
 Score =  103 bits (255), Expect = 3e-21
 Identities = 94/325 (28%), Positives = 156/325 (47%), Gaps = 21/325 (6%)

Query: 37  KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
           KV+++ D G   D SFN+ A  G ++ K+E  +E+  +   S       LE L  +   +
Sbjct: 16  KVSLVID-GTFDDKSFNESALNGVKKLKEEFEIEL-VLKESSTNSYLSDLEGLKDAGS-N 72

Query: 97  LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
           L+ L+G+ ++     V+ +  + K+A+ID       +  N V + FR QE A L G IA+
Sbjct: 73  LIWLIGYKFSDVAKAVSLQNSEMKYAIIDPVYSNEPIPSNLVGMTFRAQEGAFLTGYIAA 132

Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
            ++       IG + G++   +  F  GY  GAKY      K +K+  QY G+F D + G
Sbjct: 133 KVSKT---GKIGFLGGIEGDIVDAFRYGYEAGAKY----ANKDIKIFSQYIGSFSDLEAG 185

Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
            + A ++   G  +++  AGL  +G  +  K   E G G  + +G D  Q + AP  +  
Sbjct: 186 RSVATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVIT 241

Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
           S  K V  ++       +   T++GG +I  GLKE  VG+     +  F E  KE   L 
Sbjct: 242 STTKDVGRSLNLFTSNYLKTNTFEGGKLINYGLKEGVVGFVRNPKMIPF-EVEKEIDSLS 300

Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
            K +  + +V   KE  EK++K ++
Sbjct: 301 SKIINKEVIVPYNKESYEKFLKEFI 325


>pir||H75318 membrane lipoprotein - Deinococcus radiodurans (strain R1)
           >gi|6459864|gb|AAF11620.1|AE002043_5 (AE002043) membrane
           lipoprotein [Deinococcus radiodurans]
           Length = 379
           
 Score =  103 bits (255), Expect = 3e-21
 Identities = 85/323 (26%), Positives = 143/323 (43%), Gaps = 53/323 (16%)

Query: 33  AKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQS 92
           A+ V+V + +D GG+ D SFN  AY G++ A K+LG++++   P     +   +   A+ 
Sbjct: 32  AQAVRVGMAYDAGGKADKSFNQSAYEGSQLAAKKLGIQVKDFEPSDPSQIIQGVRSFAK- 90

Query: 93  KEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVRENEVDILFREQEAAALMGVI 152
           + +DL + VGF   + + +VA + PD  F L+D  +    +N   ++F E++ + L+G +
Sbjct: 91  EGFDLTIGVGFSNNASITQVAKENPDLYFGLVDDVS--TAKNVASLVFNEEQGSYLVGYL 148

Query: 153 ASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTG----TF 208
           A   A       +G + GM+IP + KF  GY  G K    K      ++ QY G     +
Sbjct: 149 A---AMNSSTGVVGFIGGMNIPLIHKFEAGYRAGVKAANPK----ATIISQYVGNTPEAW 201

Query: 209 GDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDW-----------------NEQG 251
            +       A  +  +GA +++  AG +  G+ D +K                   N + 
Sbjct: 202 NNPGKAKEIAANMRGRGADIIFAAAGGSGNGLIDYIKQTPCLNASQLPKGVTFKSDNFKN 261

Query: 252 RGKALA--------------MGQDASQEWYAP--------KYIPISGAKRVDVAVYDAIK 289
             K+ A              +G D++Q +            +   S  KRVD AVY  I 
Sbjct: 262 VKKSAAYAKACTGNTRPMFFIGVDSNQNYLGDFDKNPATLNHGLTSMVKRVDNAVYALIN 321

Query: 290 MVVDGTWKGGIITLGLKENGVGY 312
            V +  +K G    GLK+ GV Y
Sbjct: 322 EVKNDKFKAGERRFGLKDGGVAY 344


>emb|CAA65880.1| (X97241) membrane protein A [Borrelia afzelii]
           Length = 325
           
 Score =  102 bits (253), Expect = 5e-21
 Identities = 94/325 (28%), Positives = 156/325 (47%), Gaps = 21/325 (6%)

Query: 37  KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
           KV+++ D G   D SFN+ A  G ++ K+E  +E+  +   S       LE L  +   +
Sbjct: 16  KVSLVID-GTFDDKSFNESALNGVKKLKEEFEIEL-VLKESSTNSYLSDLEGLKDAGS-N 72

Query: 97  LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
           L+ L+G+ ++     V+ +  + K+A+ID       +  N V + FR QE A L G IA+
Sbjct: 73  LIWLIGYKFSDVAKAVSLQNSEMKYAIIDPVYSNEPIPANLVGMTFRAQEGAFLTGYIAA 132

Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
            ++       IG + G++   +  F  GY  GAKY      K +K+  QY G+F D + G
Sbjct: 133 KVSKT---GKIGFLGGIEGDIVDAFRYGYEAGAKY----ANKDIKIFSQYIGSFSDLEAG 185

Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
            + A ++   G  +++  AGL  +G  +  K   E G G  + +G D  Q + AP  +  
Sbjct: 186 RSVATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVIT 241

Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
           S  K V  ++       +   T++GG +I  GLKE  VG+     +  F E  KE   L 
Sbjct: 242 STTKDVGRSLNLLTSNYLKTNTFEGGKLINYGLKEGVVGFVRNPKMIPF-EVEKEIDSLS 300

Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
            K +  + +V   KE  EK++K ++
Sbjct: 301 SKIINKEVIVPYNKESYEKFLKEFI 325


>emb|CAA57237.1| (X81517) bmpB(p39,ORF2) [Borrelia burgdorferi]
           Length = 341
           
 Score =  102 bits (253), Expect = 5e-21
 Identities = 97/359 (27%), Positives = 173/359 (48%), Gaps = 37/359 (10%)

Query: 6   LALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKK 65
           + + I G+LL S  +     G E+ +  KK+K+++L D G   D SFN  A       KK
Sbjct: 3   IVIFIFGILLTSCFSR---NGIESSS--KKIKISMLVD-GVLDDKSFNSSANEALLPLKK 56

Query: 66  ELGVEIEYMTPKSKEDMKPL----LEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKF 121
           +    IE + P +   +       L+ L ++   DL+ LVG++ T     V+ + P   +
Sbjct: 57  DFPENIEEVFPCAISGVYSSYVSDLDNLKRNGS-DLIWLVGYMLTDASLLVSSENPKISY 115

Query: 122 ALIDSTTG---KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
            +ID   G   ++ EN + ++FR ++ A L G IA+  ++      IG + GM    +  
Sbjct: 116 GIIDPIYGDDVQIPENLIAVVFRVEQGAFLAGYIAAKKSFS---GKIGFIGGMKGNIVDA 172

Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
           F  GY  GAKY      K ++++ +Y+ +F D  +G   A ++  +G  V++  AGL  +
Sbjct: 173 FRYGYESGAKY----ANKDIEIISEYSNSFSDVDIGRTIASKMYSKGIDVIHFAAGLAGI 228

Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVY----DAIKMVVDG 294
           G+ +  K+  +        +G D  Q + APK    S  K +  A+Y    + IK   + 
Sbjct: 229 GVIETAKNLGD----GYYVIGADQDQSYLAPKNFITSVIKNIGDALYLITGEYIKN--NN 282

Query: 295 TWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIK 352
            W+GG ++ +GL++  +G   L    +F E+ K   + K +  + +V   +E+ E +IK
Sbjct: 283 VWEGGKVVQMGLRDGVIG---LPNANEF-EYIKVLER-KIINKEIIVPCNQEEYEIFIK 336


>sp|Q44743|BMPD_BORBU BASIC MEMBRANE PROTEIN D PRECURSOR >gi|1262444|gb|AAC43984.1|
           (U35450) membrane protein D [Borrelia burgdorferi]
           Length = 341
           
 Score =  102 bits (252), Expect = 7e-21
 Identities = 84/302 (27%), Positives = 142/302 (46%), Gaps = 21/302 (6%)

Query: 14  LLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEY 73
           L+   +  C     + K+EAK V + +    G   D  FN+ +     + K +L + I  
Sbjct: 9   LIFLFIVAC-SSSDDGKSEAKTVSLIV---DGAFDDKGFNESSSKAIRKLKADLNINIIE 64

Query: 74  MTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVR- 132
                   +  +     +    +L+  +GF  +  L + A +     +A+I+    +++ 
Sbjct: 65  KASTGNSYLGDIAN--LEDGNSNLIWGIGFRLSDILFQRASENVSVNYAIIEGVYDEIQI 122

Query: 133 -ENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFE 191
            +N ++I FR +E A L G  AS  A + G   IG V G+    L  F  GY  GAKY  
Sbjct: 123 PKNLLNISFRSEEVAFLAGYFAS-KASKTG--KIGFVGGVRGKVLESFMYGYEAGAKYAN 179

Query: 192 KKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQG 251
                 +K++ QY GTFGD  +G +TA  + + G  +++  AGL+ +G+ +A K+     
Sbjct: 180 SN----IKVVSQYVGTFGDFGLGRSTASNMYRDGVDIIFAAAGLSGIGVIEAAKELGPD- 234

Query: 252 RGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVD-GTWKGG-IITLGLKENG 309
                 +G D  Q + AP  + +S  K+VD  +Y   K  ++ G   GG  + LGLKE+G
Sbjct: 235 ---HYIIGVDQDQSYLAPNNVIVSAVKKVDSLMYSLTKKYLETGVLDGGKTMFLGLKEDG 291

Query: 310 VG 311
           +G
Sbjct: 292 LG 293


>pir||E70147 basic membrane lipoprotein B (bmpB) - Lyme disease spirochete
           >gi|2688282|gb|AAC66758.1| (AE001143) basic membrane
           protein B (bmpB) [Borrelia burgdorferi]
           Length = 341
           
 Score =  102 bits (252), Expect = 7e-21
 Identities = 97/359 (27%), Positives = 173/359 (48%), Gaps = 37/359 (10%)

Query: 6   LALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKK 65
           + + I G+LL S  +     G E+ +  KK+K+++L D G   D SFN  A     R KK
Sbjct: 3   IVIFIFGILLTSCFSR---NGIESSS--KKIKISMLVD-GVLDDKSFNSSANEALLRLKK 56

Query: 66  ELGVEIEYMTPKSKEDMKPL----LEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKF 121
           +    IE +   +   +       L+ L ++   DL+ LVG++ T     V+ + P   +
Sbjct: 57  DFPENIEEVFSCAISGVYSSYVSDLDNLKRNGS-DLIWLVGYMLTDASLLVSSENPKISY 115

Query: 122 ALIDSTTG---KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
            +ID   G   ++ EN + ++FR ++ A L G IA+  ++      IG + GM    +  
Sbjct: 116 GIIDPIYGDDVQIPENLIAVVFRVEQGAFLAGYIAAKKSFS---GKIGFIGGMKGNIVDA 172

Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
           F  GY  GAKY      K ++++ +Y+ +F D  +G   A ++  +G  V++  AGL  +
Sbjct: 173 FRYGYESGAKY----ANKDIEIISEYSNSFSDVDIGRTIASKMYSKGIDVIHFAAGLAGI 228

Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVY----DAIKMVVDG 294
           G+ +  K+  +        +G D  Q + APK    S  K +  A+Y    + IK   + 
Sbjct: 229 GVIETAKNLGD----GYYVIGADQDQSYLAPKNFITSVIKNIGDALYLITGEYIKN--NN 282

Query: 295 TWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIK 352
            W+GG ++ +GL++  +G   L    +F E+ K   + K +  + +V   +E+ E +IK
Sbjct: 283 VWEGGKVVQMGLRDGVIG---LPNANEF-EYIKVLER-KIINKEIIVPCNQEEYEIFIK 336


>pir||H70147 basic membrane protein D (bmpD) homolog - Lyme disease spirochete
           >gi|2688297|gb|AAB91505.1| (AE001144) basic membrane
           protein D (bmpD) [Borrelia burgdorferi]
           Length = 360
           
 Score =  102 bits (252), Expect = 7e-21
 Identities = 84/302 (27%), Positives = 142/302 (46%), Gaps = 21/302 (6%)

Query: 14  LLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEY 73
           L+   +  C     + K+EAK V + +    G   D  FN+ +     + K +L + I  
Sbjct: 28  LIFLFIVAC-SSSDDGKSEAKTVSLIV---DGAFDDKGFNESSSKAIRKLKADLNINIIE 83

Query: 74  MTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVR- 132
                   +  +     +    +L+  +GF  +  L + A +     +A+I+    +++ 
Sbjct: 84  KASTGNSYLGDIAN--LEDGNSNLIWGIGFRLSDILFQRASENVSVNYAIIEGVYDEIQI 141

Query: 133 -ENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFE 191
            +N ++I FR +E A L G  AS  A + G   IG V G+    L  F  GY  GAKY  
Sbjct: 142 PKNLLNISFRSEEVAFLAGYFAS-KASKTG--KIGFVGGVRGKVLESFMYGYEAGAKYAN 198

Query: 192 KKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQG 251
                 +K++ QY GTFGD  +G +TA  + + G  +++  AGL+ +G+ +A K+     
Sbjct: 199 SN----IKVVSQYVGTFGDFGLGRSTASNMYRDGVDIIFAAAGLSGIGVIEAAKELGPD- 253

Query: 252 RGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVD-GTWKGG-IITLGLKENG 309
                 +G D  Q + AP  + +S  K+VD  +Y   K  ++ G   GG  + LGLKE+G
Sbjct: 254 ---HYIIGVDQDQSYLAPNNVIVSAVKKVDSLMYSLTKKYLETGVLDGGKTMFLGLKEDG 310

Query: 310 VG 311
           +G
Sbjct: 311 LG 312


>pir||A43595 membrane protein C precursor - Treponema pallidum subsp. pallidum
           >gi|581809|emb|CAA40968.1| (X57836) tmbC [Treponema
           pallidum]
           Length = 353
           
 Score =  102 bits (251), Expect = 9e-21
 Identities = 78/280 (27%), Positives = 128/280 (44%), Gaps = 13/280 (4%)

Query: 38  VAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYDL 97
           V ++ D G   D SFN   + G  R  +E   + +Y+T  +  +  P L   A  +   L
Sbjct: 42  VGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTDAEYVPSLSAFAD-ENMGL 100

Query: 98  LVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVRENEVDILFREQEAAALMGVIASGMA 157
           +V  G      + E + ++P QKF +ID+   + R+N V  +F + E + L+GV A+   
Sbjct: 101 VVACGSFLVEAVIETSARFPKQKFLVIDAVV-QDRDNVVSAVFGQNEGSFLVGVAAALKR 159

Query: 158 YELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNT 217
            E G   +G + GM++  +  F  G+  G K  +      ++++ +   TF D Q G   
Sbjct: 160 KEAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVD----PDIQVVVEVANTFSDPQKGQAL 215

Query: 218 AMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEW-----YAPKYI 272
           A +L   G  V++ +AG T  G+    +D    G+     +G D  Q        +   +
Sbjct: 216 AAKLYDSGVNVIFQVAGGTGNGVIKEARDRRLNGQ-DVWVIGVDRDQYMDGVYDGSKSVV 274

Query: 273 PISGAKRVDVAVYDAIKMVVDGTWKGG-IITLGLKENGVG 311
             S  KR DVA     KM  DG++ GG  I  GL++  VG
Sbjct: 275 LTSMVKRADVAAERISKMAYDGSFPGGQSIMFGLEDKAVG 314


>emb|CAA65878.1| (X97239) membrane protein A [Borrelia afzelii]
           Length = 325
           
 Score =  102 bits (251), Expect = 9e-21
 Identities = 94/325 (28%), Positives = 155/325 (46%), Gaps = 21/325 (6%)

Query: 37  KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
           KV+++ D G   D SFN+ A  G ++ K+E  +E+  +   S       LE L  +   +
Sbjct: 16  KVSLVID-GTFDDKSFNESALNGVKKLKEEFEIEL-VLKESSTNSYLSDLEGLKDAGS-N 72

Query: 97  LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
           L+ L+G+ ++     V+ +  + K+A+ID       +  N V + FR QE A L G IA+
Sbjct: 73  LIWLIGYKFSDVAKAVSLQNSEMKYAIIDPVYSNEPIPANLVGMTFRAQEGAFLTGYIAA 132

Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
            ++       IG + G++   +  F  GY  GAKY      K +K+  QY G+F D + G
Sbjct: 133 KVSKT---GKIGFLGGIEGDIVDAFRYGYEAGAKY----ANKDIKIFSQYIGSFSDLEAG 185

Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
            + A ++   G  + +  AGL  +G  +  K   E G G  + +G D  Q + AP  +  
Sbjct: 186 RSVATKMYSDGIDITHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVVT 241

Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
           S  K V  ++       +   T++GG +I  GLKE  VG+     +  F E  KE   L 
Sbjct: 242 STTKDVGRSLNLLTSNYLKTNTFEGGKLINYGLKEGVVGFVRNPKMIPF-EVEKEIDSLS 300

Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
            K +  + +V   KE  EK++K ++
Sbjct: 301 SKIINKEVIVPYNKESYEKFLKEFI 325


>sp|O31357|BMPA_BORGA BASIC MEMBRANE PROTEIN A PRECURSOR (IMMUNODOMINANT ANTIGEN P39)
           >gi|2598251|emb|CAA65883.1| (X97244) membrane protein A
           [Borrelia garinii]
           Length = 325
           
 Score =  101 bits (250), Expect = 1e-20
 Identities = 97/340 (28%), Positives = 162/340 (47%), Gaps = 24/340 (7%)

Query: 22  CIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKED 81
           C G G+    E+   KV+++ + G   D SFN+ A  G ++ K+E  +E+  +   S   
Sbjct: 4   CSGKGS---LESGIPKVSVIVN-GTFDDKSFNESALNGIKKVKEEFKIEL-VLKESSTNS 58

Query: 82  MKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDIL 139
               LE L  +   +L+ L+G+ ++     V+ + P+ K+A+ID    +  +  N V + 
Sbjct: 59  YLSDLEGLKDAGS-NLIWLIGYRFSDVAKAVSLQNPEIKYAIIDPVYSEEPIPTNLVGMT 117

Query: 140 FREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVK 199
           FR QE A L G IA+ ++       IG + G++   +  F  GY  GAKY      K +K
Sbjct: 118 FRAQEGAFLTGYIAAKVSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKDIK 170

Query: 200 LLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMG 259
           +   Y G+F D + G + A ++   G  +++  A L  +G  +  K   E G G  + +G
Sbjct: 171 ISAHYIGSFNDVEAGRSVATKMYSDGIDIIHHAASLGGIGAIEVAK---ELGSGHYI-IG 226

Query: 260 QDASQEWYAPKYIPISGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDG 317
            D  Q + AP  I  S  K V  ++       +   T++GG +I  GLKE  VG+     
Sbjct: 227 VDEDQSYLAPNNIITSATKDVGRSLNIFTSNYLKTNTFEGGRLINYGLKEGVVGFVKNPK 286

Query: 318 VKQFAEFAKEAGKL--KDMTPDEVVQIVKEQREKYIKPYV 355
           +  F E  KE   L  K +  + +V   KE  EK++K ++
Sbjct: 287 MIPF-ELEKEIDNLSSKIINQEIIVPYNKESYEKFLKEFI 325


>emb|CAA65877.1| (X97238) membrane protein A [Borrelia garinii]
           Length = 325
           
 Score =  100 bits (247), Expect = 3e-20
 Identities = 93/325 (28%), Positives = 156/325 (47%), Gaps = 21/325 (6%)

Query: 37  KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
           KV+++ + G   D SFN+ A  G ++ K+E  +E+  +   S       LE L  +   +
Sbjct: 16  KVSVIVN-GTFDDKSFNESALNGIKKVKEEFKIEL-VLKESSTNSYLSDLEGLKDAGS-N 72

Query: 97  LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
           L+ L+G+ ++     V+ +  + K+A+ID    +  +  N V + FR QE A L G IA+
Sbjct: 73  LIWLIGYRFSDVAKAVSLQNSEIKYAIIDPVYSEEPIPANLVGMTFRAQEGAFLTGYIAA 132

Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
            ++       IG + G++   +  F  GY  GAKY      K +K+   Y G+F D + G
Sbjct: 133 KVSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKDIKISAHYIGSFDDVEAG 185

Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
            + A ++   G  +++  AGL  +G  +  K   E G G  + +G D  Q + AP  +  
Sbjct: 186 RSVATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVIT 241

Query: 275 SGAKRVDVAV-YDAIKMVVDGTWKGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKL- 331
           S  K V  A+       +   T++GG +I  GLKE  VG+     +  F E  KE   L 
Sbjct: 242 SSTKDVGRALNIFTSSYLKTNTFEGGRLINYGLKEGVVGFVKNPKMIPF-ELEKEIDNLS 300

Query: 332 -KDMTPDEVVQIVKEQREKYIKPYV 355
            K +  + +V   KE  EK++K ++
Sbjct: 301 SKIINQEIIVPYNKESYEKFLKEFI 325


>sp|O31362|BMPB_BORGA BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2598261|emb|CAA57238.1|
           (X81518) bmpB(p39,ORF2) [Borrelia garinii]
           Length = 341
           
 Score =  100 bits (246), Expect = 4e-20
 Identities = 105/396 (26%), Positives = 179/396 (44%), Gaps = 68/396 (17%)

Query: 6   LALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKK 65
           + + I+G+LL S  AG      E ++ + K+K+++L D G   D SFN  A     R ++
Sbjct: 3   IVIFILGILLTSCFAG-----NEIESGSSKIKISMLVD-GVLDDKSFNSSANRALLRLEE 56

Query: 66  ELGVEIEYMTPKSKEDMKPL----LEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKF 121
           +    IE +   +   +       L+ L  +   DL+ LVG++ T     V+ + P   +
Sbjct: 57  DFPENIEKVFSSAASGVYSSYVSDLDNLKMNGS-DLIWLVGYMLTDASLSVSLENPKISY 115

Query: 122 ALID---STTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
            +ID   S   ++ +N + ++FR ++ A L G IA+  +       IG + G+    +  
Sbjct: 116 GIIDPVYSDDVQIPKNLIGVVFRIEQGAFLAGYIAAKKSVS---GKIGFIGGVKGDIVDA 172

Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
           F  GY  GAKY +K     ++++ +Y+ +F D  +G   A ++  +G  +++  AGL  +
Sbjct: 173 FRYGYEAGAKYADKG----IEIVSEYSNSFSDVNIGRAIANKMYAKGIDIIHFAAGLAGI 228

Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVV--DGTW 296
           G+ +A K   E G G    +G D  Q   AP+    S  K V  A+Y      +  + TW
Sbjct: 229 GVIEAPK---ELGDG-YYVIGADQDQSHLAPRNFITSVIKNVGDALYLVTSEYLKNNNTW 284

Query: 297 KGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYV 355
           +GG II +GL++  VG   L    +F                           +YIK   
Sbjct: 285 EGGKIIQMGLRDGVVG---LSNANKF---------------------------EYIK--- 311

Query: 356 WDIVHELEEKIKSGEIVFKTPKTHEEYEQIIRELEK 391
                 +E KI + EI+   P  HE YE  I+++ K
Sbjct: 312 -----VIERKIVNEEII--VPYNHEGYEIFIKQILK 340


>gb|AAG00582.1|AF288609_1 (AF288609) BmpD [Borrelia burgdorferi]
           Length = 341
           
 Score = 99.8 bits (245), Expect = 5e-20
 Identities = 83/302 (27%), Positives = 141/302 (46%), Gaps = 21/302 (6%)

Query: 14  LLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEY 73
           L+   +  C     + K+ AK V + +    G   D  FN+ +     + K +L + I  
Sbjct: 9   LIFLFIVAC-SSSDDGKSGAKTVSLIV---DGAFDDKGFNESSSKAIRKLKADLNINIIE 64

Query: 74  MTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGKVR- 132
                   +  +     +    +L+  +GF  +  L + A +     +A+I+    +++ 
Sbjct: 65  KASTGNSYLGDIAN--LEDGNSNLIWGIGFRLSDILFQRASENVSVNYAIIEGVYDEIQI 122

Query: 133 -ENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFE 191
            +N ++I FR +E A L G  AS  A + G   IG V G+    L  F  GY  GAKY  
Sbjct: 123 PKNLLNISFRSEEVAFLAGYFAS-KASKTG--KIGFVGGVRGKVLESFMYGYEAGAKYAN 179

Query: 192 KKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQG 251
                 +K++ QY GTFGD  +G +TA  + + G  +++  AGL+ +G+ +A K+     
Sbjct: 180 SN----IKVVSQYVGTFGDFGLGRSTASNMYRDGVDIIFAAAGLSGIGVIEAAKELGPD- 234

Query: 252 RGKALAMGQDASQEWYAPKYIPISGAKRVDVAVYDAIKMVVD-GTWKGG-IITLGLKENG 309
                 +G D  Q + AP  + +S  K+VD  +Y   K  ++ G   GG  + LGLKE+G
Sbjct: 235 ---HYIIGVDQDQSYLAPNNVIVSAVKKVDSLMYSLTKKYLETGVLDGGKTMFLGLKEDG 291

Query: 310 VG 311
           +G
Sbjct: 292 LG 293


>sp|O31284|BMPB_BORAF BASIC MEMBRANE PROTEIN B PRECURSOR >gi|2598239|emb|CAA57239.1|
           (X81519) bmpB(p39,ORF2) [Borrelia afzelii]
           Length = 341
           
 Score = 92.4 bits (226), Expect = 8e-18
 Identities = 99/357 (27%), Positives = 170/357 (46%), Gaps = 33/357 (9%)

Query: 6   LALSIMGLLLVSIVAGCIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKK 65
           + + I G+LL S  +     G E+ +   K+K+++L D G   D SFN  A     R KK
Sbjct: 3   IVIFIFGILLTSCFSK---NGIESGSS--KIKISMLVD-GVLDDKSFNSSANEALLRLKK 56

Query: 66  ELGVEIEYMTPKSKEDMKPL----LEQLAQSKEYDLLVLVGFLWTSPLNEVADKYPDQKF 121
           +    IE +   +   +       L+ L  +    L+ LVG++       V+ + P+  +
Sbjct: 57  DFPENIEKVFSSAVSGVYSSYVSDLDNLKMNGS-GLIWLVGYMLADVSLSVSLENPEINY 115

Query: 122 ALIDSTTG---KVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWK 178
            +ID   G   ++ +N + ++FR ++ A L G IA+  +       IG V G DI   ++
Sbjct: 116 GIIDPIYGDDVQIPKNLIGVVFRIEQGAFLAGYIAAKKSVSSKIGFIGGVKG-DIVDAFR 174

Query: 179 FHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHV 238
           +  GY  GAKY      K ++++ +Y+ +F D  +    A ++  +G  +++  AGL  V
Sbjct: 175 Y--GYEAGAKY----ANKGIEIVSEYSNSFSDIDIARVMANKMYSKGIDIIHFAAGLAGV 228

Query: 239 GMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPISGAKRVDVAVY--DAIKMVVDGTW 296
           G+ +A K   E G G    +G D  Q   APK    S  K V  A+Y   +  +  D  W
Sbjct: 229 GVIEAPK---ELGDG-YYVIGADQDQSHLAPKNFITSVIKNVGDALYLITSESLKNDNVW 284

Query: 297 KGG-IITLGLKENGVGYWDLDGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIK 352
           +GG I+ +GL++  VG   L    +F E+ K+  + K +  + +V   +E  E +IK
Sbjct: 285 EGGKIVQMGLRDGVVG---LSNANEF-EYIKDLER-KIINKEIIVPCNQEGYEIFIK 336


>sp|Q48754|TCSA_LISMO CD4+ T CELL-STIMULATING ANTIGEN PRECURSOR
           >gi|7240601|gb|AAB35725.2| (S80336) CD4+ T
           cell-stimulating antigen [Listeria monocytogenes]
           Length = 268
           
 Score = 89.7 bits (219), Expect = 5e-17
 Identities = 69/256 (26%), Positives = 118/256 (45%), Gaps = 19/256 (7%)

Query: 1   MRKLGLALSIMGLLLVSIVAGCIGGGTETKTEA-----KKVKVAILFDVGGRGDLSFNDM 55
           M+K   AL++  ++   ++ G  G  ++ K  +     K   VA++ D GG  D SFN  
Sbjct: 1   MKKRTFALALSMIIASGVILGACGSSSDDKKSSDDKSSKDFTVAMVTDTGGVDDRSFNQS 60

Query: 56  AYLGAERAKKELGVE-----IEYMTPKSKEDMKPLLEQLAQSKEYDLLVLVGFLWTSPLN 110
           A+ G ++  K   +E       Y+   S+ D K  L    +S +YDL+  +G+     + 
Sbjct: 61  AWEGLQKFGKANDMEKGTDGYNYLQSASEADYKTNLNTAVRS-DYDLIYGIGYKLKDAIE 119

Query: 111 EVADKYPDQKFALIDSTTGKVRENEVDILFREQEAAALMGVIASGMAYELGGDTIGAVAG 170
           EV+ + P  +FA++D T    R+N V I F++ + + L+GV+A G+  +   + +G V G
Sbjct: 120 EVSKQKPKNQFAIVDDTIDD-RDNVVSIGFKDNDGSYLVGVVA-GLTTKT--NKVGFVGG 175

Query: 171 MDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLY 230
           +    + +F  G+  G K         V    QY   F     G   A  +   G  V++
Sbjct: 176 VKGTVIDRFEAGFTAGVKAVNPNAQIDV----QYANDFAKADKGQQIASSMYSSGVDVIF 231

Query: 231 GLAGLTHVGMFDAVKD 246
             AG T  G+F   K+
Sbjct: 232 HAAGGTGNGVFAEAKN 247


>emb|CAA65881.1| (X97242) membrane protein A [Borrelia garinii]
           Length = 264
           
 Score = 88.5 bits (216), Expect = 1e-16
 Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 16/250 (6%)

Query: 37  KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
           KV+++ D G   D SFN+ A  G ++ K+E   E+  +   S       LE L  +    
Sbjct: 16  KVSLIID-GTFDDKSFNESALNGIKKVKEEFKFEL-VLKESSTNSYLSDLEGLKDAGS-S 72

Query: 97  LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
           L+ L+G+ +      V+ + P+ K+A+ID       +  N V + FR QE A L G IA+
Sbjct: 73  LIWLIGYKFGDVAKAVSLQNPEMKYAIIDPVYSDEPIPTNLVGMTFRSQEGAFLTGYIAA 132

Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
            ++       +G +AG  +     F  GY  GAKY      K +K+   Y G+F D + G
Sbjct: 133 KVSKTSKIGFLGGIAGEIVDA---FRYGYEAGAKY----ANKDIKISTHYIGSFADLEAG 185

Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYIPI 274
            + A ++   G  +++  AGL  +G  +  K   E G G  + +G D  Q + AP  +  
Sbjct: 186 RSVATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNVIT 241

Query: 275 SGAKRVDVAV 284
           S  K V  A+
Sbjct: 242 SSTKDVGRAL 251


>emb|CAA65875.1| (X97236) membrane protein A [Borrelia garinii]
           Length = 264
           
 Score = 83.5 bits (203), Expect = 4e-15
 Identities = 73/263 (27%), Positives = 124/263 (46%), Gaps = 23/263 (8%)

Query: 22  CIGGGTETKTEAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKED 81
           C G G+    E+   KV+++ D G   D SFN+ A  G ++ K+E  +E+       +  
Sbjct: 4   CSGKGS---LESGISKVSVIID-GTFDDKSFNESALNGIKKVKEEFKIELVL----KESS 55

Query: 82  MKPLLEQLAQSKEY--DLLVLVGFLWTSPLNEVADKYPDQKFALIDS--TTGKVRENEVD 137
           +   L  L   K+   +L+ L+G+ ++     V+ +  + K+A+ID   +   +  N V 
Sbjct: 56  INSYLSDLEGLKDAGSNLIWLIGYKFSDVAKAVSLQNSEIKYAIIDPIYSDEPIPANLVG 115

Query: 138 ILFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKP 197
           + FR QE A L G IA+ ++       IG + G++   +  F  GY  GAKY      K 
Sbjct: 116 MTFRAQEGAFLTGYIAAKVSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKD 168

Query: 198 VKLLWQYTGTFGDTQVGYNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALA 257
           + +   Y G+F D + G + A ++   G  +++  AGL  +G  +  K   E G G  + 
Sbjct: 169 INISAHYIGSFADLEAGRSIATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI- 224

Query: 258 MGQDASQEWYAPKYIPISGAKRV 280
           +G D  Q + AP  +  S  K V
Sbjct: 225 IGVDEDQSYLAPNNVITSATKDV 247


>emb|CAA65882.1| (X97243) membrane protein A [Borrelia garinii]
           Length = 243
           
 Score = 82.3 bits (200), Expect = 9e-15
 Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 16/238 (6%)

Query: 37  KVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEIEYMTPKSKEDMKPLLEQLAQSKEYD 96
           KV+++ + G   D SFN+ A  G ++ K+E  +E+  +   S       LE L  +   +
Sbjct: 16  KVSVIVN-GTFDDKSFNESALNGIKKVKEEFKIEL-VLKESSTNFYLSDLEGLKDAGS-N 72

Query: 97  LLVLVGFLWTSPLNEVADKYPDQKFALIDSTTGK--VRENEVDILFREQEAAALMGVIAS 154
           L+ L+G+ ++     V+ +  D K+A+ID    +  +  N V + FR QE A L G IA+
Sbjct: 73  LIWLIGYRFSDVAKAVSLQNSDIKYAIIDPVYSEEPIPTNLVGMTFRAQEGAFLTGYIAA 132

Query: 155 GMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPVKLLWQYTGTFGDTQVG 214
            ++       IG + G++   +  F  GY  GAKY      K +K+   Y G+F D + G
Sbjct: 133 KVSKT---GKIGFLGGIEGEIVDAFRYGYEAGAKY----ANKDIKISAHYIGSFSDVEAG 185

Query: 215 YNTAMQLLQQGAKVLYGLAGLTHVGMFDAVKDWNEQGRGKALAMGQDASQEWYAPKYI 272
            + A ++   G  +++  AGL  +G  +  K   E G G  + +G D  Q + AP  +
Sbjct: 186 RSVATKMYSDGIDIIHHAAGLGGIGAIEVAK---ELGSGHYI-IGVDEDQSYLAPNNV 239


>pir||I40243 bmpC protein - Lyme disease spirochete
           >gi|1753224|gb|AAC44711.1|AAC44711 (U49938) membrane
           lipoprotein BmpC [Borrelia burgdorferi]
           >gi|9837524|gb|AAG00583.1|AF288609_2 (AF288609) BmpC
           [Borrelia burgdorferi] >gi|1092537|prf||2024249A
           membrane lipoprotein [Borrelia burgdorferi]
           Length = 353
           
 Score = 70.2 bits (169), Expect = 4e-11
 Identities = 85/357 (23%), Positives = 159/357 (43%), Gaps = 60/357 (16%)

Query: 32  EAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI--EYMTPKSKEDMKPLLEQL 89
           ++ KV V +L   G   D  +N   + G  + +   G+++  + + P   E  + L    
Sbjct: 26  KSDKVVVGVLAH-GSFYDKGYNQSVHDGVVKLRDNFGIKLITKSLRPYPIEGKRLLTVDE 84

Query: 90  AQSKE--------YDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTG---KVRENEVDI 138
           A +++         +L  L+G+ ++    +++ + PD  + +ID+      +V +N + I
Sbjct: 85  AMTEDAYEVQKNPLNLFWLIGYRFSDLSVKLSYERPDIYYGIIDAFDYGDIQVPKNSLAI 144

Query: 139 LFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPV 198
            FR +EAA L G IA+ M+ +   + IG + G     L  F  G+  G  Y   K    +
Sbjct: 145 KFRNEEAAFLAGYIAAKMSRK---EKIGFLTGPMSEHLKDFKFGFKAGIFYANPK----L 197

Query: 199 KLLWQYTGTFGDTQVGYNTAMQLLQQG-AKVLYGLAGLTHVGMFDAVKDWNEQGRGKALA 257
           +L+ +   +  D + G   A+ + ++    V++ +AG+T +G++DA K+       K   
Sbjct: 198 RLVSKKAPSLFDKEKGKAMALFMYKEDKVGVIFPIAGITGLGVYDAAKELGP----KYYV 253

Query: 258 MGQDASQEWYAPKYIPISGAKRVDVAVYD-AIKMVVDGTWKGG-IITLGLKENGVGYWDL 315
           +G +  Q + AP+ +  S  K +   +Y  + + + +  +KGG II  GLKE  +     
Sbjct: 254 IGLNQDQSYIAPQNVITSIIKDIGKVIYSISSEYINNRVFKGGIIIDRGLKEGVI----- 308

Query: 316 DGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVHELEEKIKSGEIV 372
                  E  K+   L +   DEV+                    +LE KI SGEI+
Sbjct: 309 -------EIVKDPDVLNNRLVDEVI--------------------DLENKIISGEII 338


>sp|O50169|BMPC_BORBU BASIC MEMBRANE PROTEIN C PRECURSOR >gi|7447860|pir||G70147 basic
           membrane protein C (bmpC) - Lyme disease spirochete
           >gi|2688280|gb|AAC66756.1| (AE001143) basic membrane
           protein C (bmpC) [Borrelia burgdorferi]
           Length = 353
           
 Score = 69.1 bits (166), Expect = 9e-11
 Identities = 84/357 (23%), Positives = 159/357 (44%), Gaps = 60/357 (16%)

Query: 32  EAKKVKVAILFDVGGRGDLSFNDMAYLGAERAKKELGVEI--EYMTPKSKEDMKPLLEQL 89
           ++ KV V +L   G   D  +N   + G  + +   G+++  + + P   E  + L    
Sbjct: 26  KSDKVVVGVLAH-GSFYDKGYNQSVHDGVVKLRDNFGIKLITKSLRPYPIEGKRLLTVDE 84

Query: 90  AQSKE--------YDLLVLVGFLWTSPLNEVADKYPDQKFALIDSTTG---KVRENEVDI 138
           A +++         +L  L+G+ ++    +++ + PD  + +ID+      +V +N + I
Sbjct: 85  AMTEDAYEVQKNPLNLFWLIGYRFSDLSVKLSYERPDIYYGIIDAFDYGDIQVPKNSLAI 144

Query: 139 LFREQEAAALMGVIASGMAYELGGDTIGAVAGMDIPPLWKFHIGYLFGAKYFEKKTGKPV 198
            FR +EAA L G IA+ M+ +   + IG + G     +  F  G+  G  Y   K    +
Sbjct: 145 KFRNEEAAFLAGYIAAKMSRK---EKIGFLTGPMSEHVKDFKFGFKAGIFYANPK----L 197

Query: 199 KLLWQYTGTFGDTQVGYNTAMQLLQQG-AKVLYGLAGLTHVGMFDAVKDWNEQGRGKALA 257
           +L+ +   +  D + G   A+ + ++    V++ +AG+T +G++DA K+       K   
Sbjct: 198 RLVSKKAPSLFDKEKGKAMALFMYKEDKVGVIFPIAGITGLGVYDAAKELGP----KYYV 253

Query: 258 MGQDASQEWYAPKYIPISGAKRVDVAVYD-AIKMVVDGTWKGG-IITLGLKENGVGYWDL 315
           +G +  Q + AP+ +  S  K +   +Y  + + + +  +KGG II  GLKE  +     
Sbjct: 254 IGLNQDQSYIAPQNVITSIIKDIGKVIYSISSEYINNRVFKGGIIIDRGLKEGVI----- 308

Query: 316 DGVKQFAEFAKEAGKLKDMTPDEVVQIVKEQREKYIKPYVWDIVHELEEKIKSGEIV 372
                  E  K+   L +   DEV+                    +LE KI SGEI+
Sbjct: 309 -------EIVKDPDVLNNRLVDEVI--------------------DLENKIISGEII 338


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.137    0.399 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154913363
Number of Sequences: 2977
Number of extensions: 6879792
Number of successful extensions: 20576
Number of sequences better than 1.0e-10: 39
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 20460
Number of HSP's gapped (non-prelim): 40
length of query: 404
length of database: 189,106,746
effective HSP length: 56
effective length of query: 348
effective length of database: 155,591,474
effective search space: 54145832952
effective search space used: 54145832952
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)